Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008793
(1021 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029673.1| grpE protein homolog 1, mitochondrial precur... 335 4e-92
Alignment gi|NP_001069142.1| grpE protein homolog 2, mitochondrial precur... 153 2e-37
Alignment gi|NP_001071518.1| GrpE-like 2, mitochondrial-like [Bos taurus]. 144 1e-34
>ref|NP_001029673.1| grpE protein homolog 1, mitochondrial precursor [Bos taurus].
Length = 217
Score = 335 bits (859), Expect = 4e-92
Identities = 172/217 (79%), Positives = 177/217 (81%)
Frame = +1
Query: 22 MAAPCVRVXXXXXXXXXXXXXXXXXXXCTATKQKNNGQNLEEDAGQNEQKTDLPSTEKTX 201
MAA CVR+ CTA KQKNNGQNLEEDAGQNEQKTDLPSTEKT
Sbjct: 1 MAARCVRLARGSLPAFALSLRSSPRLLCTAAKQKNNGQNLEEDAGQNEQKTDLPSTEKTL 60
Query: 202 XXXXXXXXXXXXXAMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEK 381
MEKYKRALADTEN RQRSQKLVEEAKLYGIQGFCKDLLEVADILEK
Sbjct: 61 MEEKVKLEEQLKETMEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEK 120
Query: 382 ATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFH 561
ATQ VP+EEIRDDNPHLK+LYEGL+MTE QIQKVFTKHGLLRL+PLGAKFDPYEHEALFH
Sbjct: 121 ATQCVPQEEIRDDNPHLKSLYEGLVMTEVQIQKVFTKHGLLRLNPLGAKFDPYEHEALFH 180
Query: 562 TPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA 672
TPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVK A
Sbjct: 181 TPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKGA 217
>ref|NP_001069142.1| grpE protein homolog 2, mitochondrial precursor [Bos taurus].
Length = 224
Score = 153 bits (387), Expect = 2e-37
Identities = 75/143 (52%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Frame = +1
Query: 250 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 426
+Y+RA+AD+EN R+R+Q+ VE+AK++GIQ FCKDL+EVADILEK T+ + +E E D
Sbjct: 78 RYQRAVADSENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTTECISEETEPADQKL 137
Query: 427 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 603
L+ ++ GL + EA+++ VF KHGL ++ P+G K+DP+EHE + H P G +PGTVA V
Sbjct: 138 TLEKIFRGLSLLEAKLKSVFAKHGLEKMTPIGDKYDPHEHELICHVPAGVGVQPGTVAFV 197
Query: 604 NKVGYKLHGRTLRPALVGVVKEA 672
+ GYKLHGRT+R A V V E+
Sbjct: 198 RQDGYKLHGRTIRLAQVEVAVES 220
>ref|NP_001071518.1| GrpE-like 2, mitochondrial-like [Bos taurus].
Length = 194
Score = 144 bits (364), Expect = 1e-34
Identities = 72/143 (50%), Positives = 102/143 (71%), Gaps = 2/143 (1%)
Frame = +1
Query: 250 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 426
+Y+ A+ D+EN R+R+Q+ VE+AK++GIQ FCKDL+EVADILEK T+ + +E E D
Sbjct: 48 RYQTAVGDSENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTTECISEETEPADQKL 107
Query: 427 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 603
L+ ++ GL + EA+++ VF KH L ++ P+G K DP+EHE + H P G +PGTVA V
Sbjct: 108 TLEKIFRGLSLLEAKLKSVFAKHVLEKMTPIGDKHDPHEHELICHVPAGVGVQPGTVAFV 167
Query: 604 NKVGYKLHGRTLRPALVGVVKEA 672
+ GYKLHGRT+R A V V E+
Sbjct: 168 RQDGYKLHGRTIRLAQVEVAVES 190
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,544,864
Number of extensions: 754346
Number of successful extensions: 2656
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2650
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008793
(1021 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545902.2| PREDICTED: similar to GrpE protein homolog 1, m... 322 5e-88
Alignment gi|XP_546313.2| PREDICTED: similar to GrpE protein homolog 2, m... 153 3e-37
>ref|XP_545902.2| PREDICTED: similar to GrpE protein homolog 1, mitochondrial
precursor (Mt-GrpE#1) (HMGE) [Canis familiaris].
Length = 294
Score = 322 bits (824), Expect = 5e-88
Identities = 161/190 (84%), Positives = 170/190 (89%)
Frame = +1
Query: 103 CTATKQKNNGQNLEEDAGQNEQKTDLPSTEKTXXXXXXXXXXXXXXAMEKYKRALADTEN 282
CTATKQKN G+NLEED GQNEQKTD PSTEKT +EKYKRALADTEN
Sbjct: 106 CTATKQKN-GRNLEEDVGQNEQKTDTPSTEKTLMDEKVKLEEQLKETVEKYKRALADTEN 164
Query: 283 FRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEEIRDDNPHLKNLYEGLLMT 462
RQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEE++DDNPHLKNLYEGL+MT
Sbjct: 165 LRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEEVKDDNPHLKNLYEGLVMT 224
Query: 463 EAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPVEGKEPGTVALVNKVGYKLHGRTLR 642
E QIQKVFTKHGLLRL+P+GA+FDPYEHEALFHTPVEGKEPGTVALV+KVGYKLHGRTLR
Sbjct: 225 EVQIQKVFTKHGLLRLNPVGARFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLR 284
Query: 643 PALVGVVKEA 672
PALVGVVKEA
Sbjct: 285 PALVGVVKEA 294
>ref|XP_546313.2| PREDICTED: similar to GrpE protein homolog 2, mitochondrial
precursor (Mt-GrpE#2) [Canis familiaris].
Length = 281
Score = 153 bits (386), Expect = 3e-37
Identities = 76/143 (53%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Frame = +1
Query: 250 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 426
+Y+RA+AD EN R+R+Q+ VE+AK++GIQ FCKDL+EVADILEK T+ + +E E D
Sbjct: 135 RYQRAVADGENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTTEYISEETEPGDQKL 194
Query: 427 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 603
L+ ++ GL + EA+++ VF KHGL ++ P+G K+DP+EHE + H P G +PGTVALV
Sbjct: 195 TLEKIFRGLSLLEAKLKSVFAKHGLEKMTPIGDKYDPHEHELICHVPAGVGVQPGTVALV 254
Query: 604 NKVGYKLHGRTLRPALVGVVKEA 672
+ GYKLHGRT+R A V V E+
Sbjct: 255 RQDGYKLHGRTIRLARVEVAVES 277
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,776,779
Number of extensions: 764196
Number of successful extensions: 2722
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2718
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008793
(1021 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356895.1| PREDICTED: grpE protein homolog 1, mitochond... 370 e-103
Alignment gi|XP_003124132.1| PREDICTED: grpE protein homolog 2, mitochond... 147 9e-36
Alignment gi|XP_003124131.1| PREDICTED: grpE protein homolog 2, mitochond... 147 9e-36
>ref|XP_003356895.1| PREDICTED: grpE protein homolog 1, mitochondrial-like [Sus scrofa].
Length = 230
Score = 370 bits (950), Expect = e-103
Identities = 191/224 (85%), Positives = 191/224 (85%)
Frame = +1
Query: 1 GLTAAAVMAAPCVRVXXXXXXXXXXXXXXXXXXXCTATKQKNNGQNLEEDAGQNEQKTDL 180
GLTAAAVMAAPCVRV CTATKQKNNGQNLEEDAGQNEQKTDL
Sbjct: 7 GLTAAAVMAAPCVRVARRSLSALALSLRPSPRLLCTATKQKNNGQNLEEDAGQNEQKTDL 66
Query: 181 PSTEKTXXXXXXXXXXXXXXAMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLE 360
PSTEKT AMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLE
Sbjct: 67 PSTEKTLMEEKVKLEEQLKEAMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLE 126
Query: 361 VADILEKATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPY 540
VADILEKATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPY
Sbjct: 127 VADILEKATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPY 186
Query: 541 EHEALFHTPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA 672
EHEALFHTPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA
Sbjct: 187 EHEALFHTPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA 230
>ref|XP_003124132.1| PREDICTED: grpE protein homolog 2, mitochondrial-like isoform 2
[Sus scrofa].
Length = 210
Score = 147 bits (371), Expect = 9e-36
Identities = 74/143 (51%), Positives = 103/143 (72%), Gaps = 2/143 (1%)
Frame = +1
Query: 250 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 426
+Y+RA+AD EN R+R+Q+ VE+AK++GIQ FCKDL+EVAD+LEK +E E D
Sbjct: 64 RYQRAVADGENIRRRTQRCVEDAKIFGIQSFCKDLVEVADLLEKTAGCASEEAEPGDQKL 123
Query: 427 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 603
L+ ++ L + EA+++ VF KHGL ++ PLGA++DP+EHE + H P G +PGTVALV
Sbjct: 124 VLEKIFRALSLLEAKLKSVFAKHGLEKMTPLGAQYDPHEHELICHVPAGAGVQPGTVALV 183
Query: 604 NKVGYKLHGRTLRPALVGVVKEA 672
+ GYKLHGRT+R A V V E+
Sbjct: 184 RQDGYKLHGRTIRLARVEVAVES 206
>ref|XP_003124131.1| PREDICTED: grpE protein homolog 2, mitochondrial-like isoform 1
[Sus scrofa].
Length = 220
Score = 147 bits (371), Expect = 9e-36
Identities = 74/143 (51%), Positives = 103/143 (72%), Gaps = 2/143 (1%)
Frame = +1
Query: 250 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 426
+Y+RA+AD EN R+R+Q+ VE+AK++GIQ FCKDL+EVAD+LEK +E E D
Sbjct: 74 RYQRAVADGENIRRRTQRCVEDAKIFGIQSFCKDLVEVADLLEKTAGCASEEAEPGDQKL 133
Query: 427 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 603
L+ ++ L + EA+++ VF KHGL ++ PLGA++DP+EHE + H P G +PGTVALV
Sbjct: 134 VLEKIFRALSLLEAKLKSVFAKHGLEKMTPLGAQYDPHEHELICHVPAGAGVQPGTVALV 193
Query: 604 NKVGYKLHGRTLRPALVGVVKEA 672
+ GYKLHGRT+R A V V E+
Sbjct: 194 RQDGYKLHGRTIRLARVEVAVES 216
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,867,691
Number of extensions: 513548
Number of successful extensions: 1751
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1740
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008793
(1021 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077798.1| grpE protein homolog 1, mitochondrial precursor... 318 3e-87
Alignment gi|NP_067271.1| grpE protein homolog 2, mitochondrial precursor... 150 2e-36
>ref|NP_077798.1| grpE protein homolog 1, mitochondrial precursor [Mus musculus].
Length = 217
Score = 318 bits (816), Expect = 3e-87
Identities = 163/217 (75%), Positives = 173/217 (79%)
Frame = +1
Query: 22 MAAPCVRVXXXXXXXXXXXXXXXXXXXCTATKQKNNGQNLEEDAGQNEQKTDLPSTEKTX 201
MAA CVR+ CTATKQKNNGQNL+ED G E KTD PS +KT
Sbjct: 1 MAARCVRLARRSLPALALSFRPSPRLLCTATKQKNNGQNLDEDLGHCEPKTDPPSADKTL 60
Query: 202 XXXXXXXXXXXXXAMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEK 381
MEKYKRALADTEN RQRSQKLVEEAKLYGIQGFCKDLLEVADILEK
Sbjct: 61 LEEKAKLEEQLRETMEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEK 120
Query: 382 ATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFH 561
ATQSVPKEEI ++NPHLK+LYEGL+MTE QIQKVFTKHGLLRLDP+GAKFDPYEHEALFH
Sbjct: 121 ATQSVPKEEISNNNPHLKSLYEGLVMTEVQIQKVFTKHGLLRLDPIGAKFDPYEHEALFH 180
Query: 562 TPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA 672
TPVEGKEPGTVALV+KVGYKLHGRTLRPALVGVVK+A
Sbjct: 181 TPVEGKEPGTVALVSKVGYKLHGRTLRPALVGVVKDA 217
>ref|NP_067271.1| grpE protein homolog 2, mitochondrial precursor [Mus musculus].
Length = 224
Score = 150 bits (379), Expect = 2e-36
Identities = 75/143 (52%), Positives = 105/143 (73%), Gaps = 2/143 (1%)
Frame = +1
Query: 250 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPK-EEIRDDNP 426
+Y+RA+AD EN R+R+Q+ VE+AK++GIQ FCKDL+EVADILEK + + E D
Sbjct: 78 RYQRAVADCENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTAKCCSEGAEPEDHRR 137
Query: 427 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 603
L+ +++GL + EA+++ VFTKHGL ++ P+G K+DP+EHE + H P G +PGTVALV
Sbjct: 138 TLEKVFQGLSLLEARLKSVFTKHGLEKMTPIGDKYDPHEHELICHMPAGVGVQPGTVALV 197
Query: 604 NKVGYKLHGRTLRPALVGVVKEA 672
+ GYKLHGRT+R A V V E+
Sbjct: 198 RQDGYKLHGRTIRLAQVEVAVES 220
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,399,173
Number of extensions: 620531
Number of successful extensions: 2262
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2259
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008793
(1021 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079472.1| grpE protein homolog 1, mitochondrial precursor... 322 3e-88
Alignment gi|NP_689620.2| grpE protein homolog 2, mitochondrial precursor... 157 1e-38
>ref|NP_079472.1| grpE protein homolog 1, mitochondrial precursor [Homo sapiens].
Length = 217
Score = 322 bits (826), Expect = 3e-88
Identities = 163/217 (75%), Positives = 175/217 (80%)
Frame = +1
Query: 22 MAAPCVRVXXXXXXXXXXXXXXXXXXXCTATKQKNNGQNLEEDAGQNEQKTDLPSTEKTX 201
MAA CVR+ CTATKQKN+GQNLEED GQ+EQK D P+TEKT
Sbjct: 1 MAAQCVRLARRSLPALALSLRPSPRLLCTATKQKNSGQNLEEDMGQSEQKADPPATEKTL 60
Query: 202 XXXXXXXXXXXXXAMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEK 381
+EKYKRALADTEN RQRSQKLVEEAKLYGIQ FCKDLLEVAD+LEK
Sbjct: 61 LEEKVKLEEQLKETVEKYKRALADTENLRQRSQKLVEEAKLYGIQAFCKDLLEVADVLEK 120
Query: 382 ATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFH 561
ATQ VPKEEI+DDNPHLKNLYEGL+MTE QIQKVFTKHGLL+L+P+GAKFDPYEHEALFH
Sbjct: 121 ATQCVPKEEIKDDNPHLKNLYEGLVMTEVQIQKVFTKHGLLKLNPVGAKFDPYEHEALFH 180
Query: 562 TPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA 672
TPVEGKEPGTVALV+KVGYKLHGRTLRPALVGVVKEA
Sbjct: 181 TPVEGKEPGTVALVSKVGYKLHGRTLRPALVGVVKEA 217
>ref|NP_689620.2| grpE protein homolog 2, mitochondrial precursor [Homo sapiens].
Length = 225
Score = 157 bits (398), Expect = 1e-38
Identities = 78/143 (54%), Positives = 107/143 (74%), Gaps = 2/143 (1%)
Frame = +1
Query: 250 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 426
+Y+RA+AD EN R+R+Q+ VE+AK++GIQ FCKDL+EVADILEK T+ + +E E D
Sbjct: 79 RYQRAIADCENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTTECISEESEPEDQKL 138
Query: 427 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 603
L+ ++ GLL+ EA+++ VF KHGL +L P+G K+DP+EHE + H P G +PGTVALV
Sbjct: 139 TLEKVFRGLLLLEAKLKSVFAKHGLEKLTPIGDKYDPHEHELICHVPAGVGVQPGTVALV 198
Query: 604 NKVGYKLHGRTLRPALVGVVKEA 672
+ GYKLHGRT+R A V V E+
Sbjct: 199 RQDGYKLHGRTIRLARVEVAVES 221
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,165,097
Number of extensions: 744508
Number of successful extensions: 2733
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2719
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008793
(1021 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 1273 0.0
Sscrofa_Chr06 274 9e-71
Sscrofa_Chr03 96 5e-17
>Sscrofa_Chr08
|| Length = 148491826
Score = 1273 bits (642), Expect = 0.0
Identities = 654/658 (99%)
Strand = Plus / Minus
Query: 328 ggcattcagggcttctgcaaggacctgctggaggtcgcagacatcttggagaaggcgaca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398367 ggcattcagggcttctgcaaggacctgctggaggtcgcagacatcttggagaaggcgaca 3398308
Query: 388 cagtctgtcccgaaggaagagatcagagacgacaacccccacctgaagaacctctacgag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398307 cagtctgtcccgaaggaagagatcagagacgacaacccccacctgaagaacctctacgag 3398248
Query: 448 gggctcctgatgaccgaggcccagatccagaaggtgttcaccaagcacggcttgctccgc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398247 gggctcctgatgaccgaggcccagatccagaaggtgttcaccaagcacggcttgctccgc 3398188
Query: 508 ctggaccccctgggcgccaagttcgacccgtacgagcacgaggccttgttccacacgccg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398187 ctggaccccctgggcgccaagttcgacccgtacgagcacgaggccttgttccacacgccg 3398128
Query: 568 gtggagggcaaggagccgggcacggtggcgctggttaacaaagtgggctacaagctgcac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398127 gtggagggcaaggagccgggcacggtggcgctggttaacaaagtgggctacaagctgcac 3398068
Query: 628 gggcgcaccctgaggcccgccctggtgggggtggtgaaggaggcctagccgccgccaggg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398067 gggcgcaccctgaggcccgccctggtgggggtggtgaaggaggcctagccgccgccaggg 3398008
Query: 688 ctgctggcgtttgcaggtgactctcagaaggccggttgtctttgctcctgccagtgcttt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398007 ctgctggcgtttgcaggtgactctcagaaggccggttgtctttgctcctgccagtgcttt 3397948
Query: 748 gacctttccctgacccccgttggaaggcttcggtcaccacggcgccacagaacagcaagc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3397947 gacctttccctgacccccgttggaaggcttcggtcaccacggcgccacagaacagcaagc 3397888
Query: 808 cagttgcgcagtcgtgtcaacagactggagctggggagtcgttcgttgattttccatgca 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3397887 cagttgcgcagtcgtgtcaacagactggagctggggagtcgttcgttgattttccatgca 3397828
Query: 868 tatttgatagttggtgtgctgacggatcgctgccggagcctcgggtgtcgtgaaaaacac 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3397827 tatttgatagttggtgtgctgacggatcgctgccggagcctcgggtgtcgtgaaaaacac 3397768
Query: 928 tgtgtctgctcagactctggtgacctcaaaggggttgagatgaataaaaagtccatgt 985
|||||||||||||||||||||||||||| |||| ||||||||||||||| ||| ||||
Sbjct: 3397767 tgtgtctgctcagactctggtgacctcagagggtttgagatgaataaaaggtcgatgt 3397710
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 82 aggccctctccccggctgctgtgcacagccacaaaacagaagaacaacggccagaacttg 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410825 aggccctctccccggctgctgtgcacagccacaaaacagaagaacaacggccagaacttg 3410766
Query: 142 gaagaggacgcgggtcagaatgaacagaagacagatcttccctctacagagaagaccctc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410765 gaagaggacgcgggtcagaatgaacagaagacagatcttccctctacagagaagaccctc 3410706
Query: 202 atggaggagaaggtcaagctggaagagcagctgaaggaggccatgg 247
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410705 atggaggagaaggtcaagctggaagagcagctgaaggaggccatgg 3410660
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 1 gggctgacggcggcggcagtcatggcggctccgtgtgtgagggtggcgcggcgcagcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413643 gggctgacggcggcggcagtcatggcggctccgtgtgtgagggtggcgcggcgcagcctc 3413584
Query: 61 tcggctttagcgttgtctctcagg 84
||||||||||||||||||||||||
Sbjct: 3413583 tcggctttagcgttgtctctcagg 3413560
Score = 159 bits (80), Expect = 4e-36
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 246 ggaaaaatacaagcgagctttggcagatactgagaactttcggcagaggagccaaaaatt 305
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3409172 ggaaaaatacaagcgagcgttggcagatactgagaactttcggcagaggagccaaaaatt 3409113
Query: 306 ggtggaggaagctaaactctatgg 329
||||||||||||||||||||||||
Sbjct: 3409112 ggtggaggaagctaaactctatgg 3409089
>Sscrofa_Chr06
|| Length = 157765593
Score = 274 bits (138), Expect = 9e-71
Identities = 325/384 (84%), Gaps = 10/384 (2%)
Strand = Plus / Minus
Query: 112 acaaaacagaagaacaacggccagaacttggaagaggacgcgggtcagaatgaacagaag 171
|||||||| ||||||| |||||||||| ||| |||| |||||||||||||||||||
Sbjct: 98879462 acaaaacaaaagaacagtggccagaactcggacgagggtatgggtcagaatgaacagaag 98879403
Query: 172 acagatcttccctctacagagaagaccctcatggaggagaaggtcaagctggaagagcag 231
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 98879402 acagatcttccctctacagagaagacactcatggaggagaaggtcaaggtggaagagcag 98879343
Query: 232 ctgaaggaggccatggaaaaatacaagcgagctttggcagatactgagaactttcggcag 291
|| | ||| ||| || |||||| |||| |||||||||||||||||||||||| | ||||
Sbjct: 98879342 ctaagagagaccacgggaaaatataagcaagctttggcagatactgagaacttgcagcag 98879283
Query: 292 aggagccaaaaattggtggaggaagc--taaactctatggcattcagggcttctgcaagg 349
| |||||||||||||||||||| ||| ||||| || ||||||||||||||||| ||||
Sbjct: 98879282 aagagccaaaaattggtggaggtagcaaaaaactatagggcattcagggcttctg-aagg 98879224
Query: 350 acctgctggaggtcgcagacatcttggagaaggcgacacagtctgtcccgaaggaagaga 409
| ||||||| || | |||||||| ||| |||||||| ||| || ||||||||||
Sbjct: 98879223 atgtgctggaagttg----catcttgg---aggtgacacagtgtgttccaaaggaagaga 98879171
Query: 410 tcagagacgacaacccccacctgaagaacctctacgaggggctcctgatgaccgaggccc 469
| ||||| || |||||||||||||||||||| ||| | || | ||||||| | | ||
Sbjct: 98879170 ttagagatgataacccccacctgaagaacctttacaaaggaattgtgatgactggagtcc 98879111
Query: 470 agatccagaaggtgttcaccaagc 493
||||||||||||||||||| ||||
Sbjct: 98879110 agatccagaaggtgttcacaaagc 98879087
>Sscrofa_Chr03
|| Length = 144787322
Score = 95.6 bits (48), Expect = 5e-17
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 869 atttgatagttggtgtgctgacggatcgctgccggagcctcgggtgtcgtgaaaaacact 928
|||| |||||| ||||||||||||| | || | |||||||||||| || |||||||||||
Sbjct: 94020955 atttaatagtttgtgtgctgacggaactctactggagcctcgggtatcatgaaaaacact 94021014
Query: 929 gtgtctgctcagactctggtgacctcaaaggggttgagatgaataaaa 976
|| |||||||| | ||||||||| ||| || | |||||||||||||||
Sbjct: 94021015 gtatctgctcaaattctggtgacatcagagcgtttgagatgaataaaa 94021062
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,341,452
Number of extensions: 143
Number of successful extensions: 143
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 8
Length of query: 1021
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1000
Effective length of database: 2,808,413,156
Effective search space: 2808413156000
Effective search space used: 2808413156000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)