Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008798
(1548 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070487.1| opioid growth factor receptor [Bos taurus]. 664 0.0
Alignment gi|XP_002690056.1| PREDICTED: opioid growth factor receptor-lik... 263 2e-70
Alignment gi|XP_597850.4| PREDICTED: opioid growth factor receptor-like 1... 263 2e-70
>ref|NP_001070487.1| opioid growth factor receptor [Bos taurus].
Length = 535
Score = 664 bits (1714), Expect = 0.0
Identities = 338/497 (68%), Positives = 366/497 (73%), Gaps = 9/497 (1%)
Frame = +2
Query: 83 MEDPDCDSTWXXXXXXXXXXPFSRADEGGEARAPGTARAEAEETLRFCMPQVKVTGSRNW 262
MED DCDSTW P + A E GE A G A EAEE Q+KVTGSRNW
Sbjct: 1 MEDSDCDSTWDEDEEENGEGPRAEAGEDGETGALGNA--EAEEDAPPSALQLKVTGSRNW 58
Query: 263 RAARDTRRYRHHYPDLVEPDGNGDMPNLSFYKNEMAFLPNGCFIEDLLKNWKEDYDLLED 442
RAARDTRRYRHHYPDLVE D NGDM NLSFYKNE+ FLPNGCFIED+L+NWK+DY+LLED
Sbjct: 59 RAARDTRRYRHHYPDLVEGDDNGDMLNLSFYKNEIRFLPNGCFIEDILQNWKDDYELLED 118
Query: 443 NHTYIQWLFPLREPGVNWHAKPLTLQEVEAFKSSPEVKERLVRAYELMLGFYGIQLKDRK 622
NH+YIQWLFPLREPGVNWHAKPLTLQE+EAFK S EV++RLV+AYELMLGF+GIQL+DR
Sbjct: 119 NHSYIQWLFPLREPGVNWHAKPLTLQEIEAFKKSAEVRKRLVQAYELMLGFFGIQLQDRD 178
Query: 623 TGRVCRAQNYQKRFQNLNWHSHNNLRITRMLKSLGELGLEHFQVPLTRFFLEETLVRREL 802
TG+VCRA NYQKRFQNLNWHSHNNLRITR+LKSLGELGL H+Q PL RFFLEETLVRR+L
Sbjct: 179 TGQVCRAHNYQKRFQNLNWHSHNNLRITRILKSLGELGLAHYQAPLARFFLEETLVRRQL 238
Query: 803 PGVRQSALDYFVFTVRCRHQRRELLYFAWEHFRPRCRFVWAPLEKLQKFRPCSPPCSPRT 982
PG+R SALDYFVFTVRCRHQRRELL FAWEHFRPR RFVW P +KLQKF+PCSPPCS R
Sbjct: 239 PGLRHSALDYFVFTVRCRHQRRELLRFAWEHFRPRYRFVWGPQDKLQKFKPCSPPCSSRL 298
Query: 983 GPRWAAKREKGPQDPVLEASAPGQTCXXXXXXXXXXXXXXXXXXXXXXXXADALERDPGD 1162
AK E+ P +P LEAS TC ALERD GD
Sbjct: 299 ACPRQAKEEESPGEPPLEASTQRHTCGLGKDEEAGPLAEGPQLPGTESQEVRALERDQGD 358
Query: 1163 EAGGEQGPASPNPKESKKRKLEASLRERAPGEPGPSALEVEKIALNLEGCALSQGGLGDX 1342
E EQGP SPNPKESKKRKLEA+LRERA GEPG SA EVEKIALNLEGCALSQG L
Sbjct: 359 ETSEEQGPESPNPKESKKRKLEANLRERALGEPGASASEVEKIALNLEGCALSQGSLRVE 418
Query: 1343 XXXXXXXXXXXXXXPCLQPPGTKVADEVRKRRKVDQGARDGAGVAA---------TRPPA 1495
PC QPPG KVADEVRKRRK+DQGA D AA T+PPA
Sbjct: 419 TQEVVSQAPEEAKQPCPQPPGAKVADEVRKRRKMDQGASDHPEAAADGGTLTLATTKPPA 478
Query: 1496 PSGCPEAKEGQSEIKEE 1546
PS C EA+EG + IKEE
Sbjct: 479 PSECSEAEEGANGIKEE 495
>ref|XP_002690056.1| PREDICTED: opioid growth factor receptor-like 1-like [Bos taurus].
Length = 382
Score = 263 bits (673), Expect = 2e-70
Identities = 133/266 (50%), Positives = 176/266 (66%), Gaps = 2/266 (0%)
Frame = +2
Query: 254 RNWRAARDTRRYRHHYPDLVEPDGNGDMPNLSFYKNEMAFLPNGCFIEDLLKNWKEDYDL 433
R++ AARD +YRH YP+ + D+ NL FYKN++ F P+G +IE++L WK DY+
Sbjct: 22 RSFYAARDLYKYRHQYPNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLNKWKGDYEK 81
Query: 434 LEDNHTYIQWLFPLREPGVNWHAKPLTLQEVEAFKSSPEVKERLVRAYELMLGFYGIQLK 613
LE NHTYIQWLFPLRE G+N++AK LT E+E FK + E R + AY++ML F+GI+L
Sbjct: 82 LEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFLLAYKMMLEFFGIKLI 141
Query: 614 DRKTGRVCRAQNYQKRFQNLNWHSHNNLRITRMLKSLGELGLEHFQVPLTRFFLEETLVR 793
D KTG V RA N+Q+RFQ+LN HN LRITR+LKSLGELG E F+ PL +F L E LV
Sbjct: 142 D-KTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGYESFKSPLVKFILHEALVE 200
Query: 794 RELPGVRQSALDYFVFTVRCRHQRRELLYFAWEHFRPRCRFVWAPLEKLQK--FRPCSPP 967
+P ++QSAL+YFV+T+R R +RR+LL FA +H+ P F+W P K Q + PP
Sbjct: 201 NTIPNIKQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPRKAQPEGSKAQKPP 260
Query: 968 CSPRTGPRWAAKREKGPQDPVLEASA 1045
P G K P+D +SA
Sbjct: 261 GPPTAGQHGQMSMHKKPKDSKNASSA 286
>ref|XP_597850.4| PREDICTED: opioid growth factor receptor-like 1-like [Bos taurus].
Length = 419
Score = 263 bits (673), Expect = 2e-70
Identities = 133/266 (50%), Positives = 176/266 (66%), Gaps = 2/266 (0%)
Frame = +2
Query: 254 RNWRAARDTRRYRHHYPDLVEPDGNGDMPNLSFYKNEMAFLPNGCFIEDLLKNWKEDYDL 433
R++ AARD +YRH YP+ + D+ NL FYKN++ F P+G +IE++L WK DY+
Sbjct: 59 RSFYAARDLYKYRHQYPNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLNKWKGDYEK 118
Query: 434 LEDNHTYIQWLFPLREPGVNWHAKPLTLQEVEAFKSSPEVKERLVRAYELMLGFYGIQLK 613
LE NHTYIQWLFPLRE G+N++AK LT E+E FK + E R + AY++ML F+GI+L
Sbjct: 119 LEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFLLAYKMMLEFFGIKLI 178
Query: 614 DRKTGRVCRAQNYQKRFQNLNWHSHNNLRITRMLKSLGELGLEHFQVPLTRFFLEETLVR 793
D KTG V RA N+Q+RFQ+LN HN LRITR+LKSLGELG E F+ PL +F L E LV
Sbjct: 179 D-KTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGYESFKSPLVKFILHEALVE 237
Query: 794 RELPGVRQSALDYFVFTVRCRHQRRELLYFAWEHFRPRCRFVWAPLEKLQK--FRPCSPP 967
+P ++QSAL+YFV+T+R R +RR+LL FA +H+ P F+W P K Q + PP
Sbjct: 238 NTIPNIKQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPRKAQPEGSKAQKPP 297
Query: 968 CSPRTGPRWAAKREKGPQDPVLEASA 1045
P G K P+D +SA
Sbjct: 298 GPPTAGQHGQMSMHKKPKDSKNASSA 323
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,758,845
Number of extensions: 1072363
Number of successful extensions: 5980
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5938
Number of HSP's successfully gapped: 3
Length of query: 516
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 409
Effective length of database: 14,140,958
Effective search space: 5783651822
Effective search space used: 5783651822
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008798
(1548 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543089.2| PREDICTED: similar to Opioid growth factor rece... 493 e-139
Alignment gi|XP_538997.2| PREDICTED: similar to opioid growth factor rece... 257 2e-68
>ref|XP_543089.2| PREDICTED: similar to Opioid growth factor receptor (OGFr) (Zeta-type
opioid receptor) (7-60 protein) [Canis familiaris].
Length = 518
Score = 493 bits (1270), Expect = e-139
Identities = 263/448 (58%), Positives = 296/448 (66%), Gaps = 10/448 (2%)
Frame = +2
Query: 230 PQVKVTGSRNWRAARDTRRYRHHYPDLVEPDGNGDMPNLSFYKNEMAFLPNGCFIEDLLK 409
P ++ GSRNWRA RDTRRYRH YPDL+E DGNGDMPNLSFY+NE+ FLPNGCFIED+L+
Sbjct: 108 PWTRMLGSRNWRAMRDTRRYRHQYPDLIERDGNGDMPNLSFYRNEIRFLPNGCFIEDILQ 167
Query: 410 NWKEDYDLLEDNHTYIQWLFPLREPGVNWHAKPLTLQEVEAFKSSPEVKERLVRAYELML 589
NW+ DYDLLE+NH+YIQWLFPLREPGVNWHAKPLTL+EVEAFKSS EV+ER V+AYELML
Sbjct: 168 NWRTDYDLLEENHSYIQWLFPLREPGVNWHAKPLTLREVEAFKSSKEVRERFVKAYELML 227
Query: 590 GFYGIQLKDRKTGRVCRAQNYQKRFQNLNWHSHNNLRITRMLKSLGELGLEHFQVPLTRF 769
GFYGIQL+DR TG+VCRAQNYQKRFQNLNWHSHNNLRITR+LKSLGELGL H+Q PL RF
Sbjct: 228 GFYGIQLEDRDTGQVCRAQNYQKRFQNLNWHSHNNLRITRILKSLGELGLPHYQAPLARF 287
Query: 770 FLEETLVRRELPGVRQSALDYFVFTVRCRHQRRELLYFAWEHFRPRCRFVWAPLEKLQKF 949
FLEETLVRRELP VRQSALDYFVFTVRC QRR+LL FAWEHFRPR +FVW P +KL++
Sbjct: 288 FLEETLVRRELPAVRQSALDYFVFTVRCPRQRRQLLRFAWEHFRPRRKFVWGPHDKLRRL 347
Query: 950 RPCSPPCSPRTGPRWAAKREKGPQDPVLEASAPGQTCXXXXXXXXXXXXXXXXXXXXXXX 1129
RP PP E GP+ P + S +
Sbjct: 348 RP--PPGGA------GGHGEAGPEPPSPKESKKRK------------------------- 374
Query: 1130 XADALERDPGDEAGGEQGPASPNPKESKKRKLEASLRERAPGEPGPSALEVEKIALNLEG 1309
LE ++A GE PG G S +VEKIALNLEG
Sbjct: 375 ----LEASRREQAPGE------------------------PGAQGAS--DVEKIALNLEG 404
Query: 1310 CALSQGGLGDXXXXXXXXXXXXXXXPCLQPPGTKVADEVRKRRKVDQGARDGA------- 1468
CALSQGGLG PC QPPG KVA+EVRKRRKVDQG GA
Sbjct: 405 CALSQGGLG----GGAQERAGEAERPCPQPPGPKVAEEVRKRRKVDQGPGGGAPGDGGED 460
Query: 1469 ---GVAATRPPAPSGCPEAKEGQSEIKE 1543
G P GC EA+E + ++E
Sbjct: 461 GGEGPEGAEGPEGPGCAEAREAEEGVQE 488
>ref|XP_538997.2| PREDICTED: similar to opioid growth factor receptor-like 1 [Canis
familiaris].
Length = 382
Score = 257 bits (657), Expect = 2e-68
Identities = 124/230 (53%), Positives = 166/230 (72%)
Frame = +2
Query: 254 RNWRAARDTRRYRHHYPDLVEPDGNGDMPNLSFYKNEMAFLPNGCFIEDLLKNWKEDYDL 433
R++ AARD +YRH YP+ + D+ NL FYKN++ F P+G +IE++L WK DY+
Sbjct: 22 RSFYAARDLYKYRHQYPNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLNKWKGDYEK 81
Query: 434 LEDNHTYIQWLFPLREPGVNWHAKPLTLQEVEAFKSSPEVKERLVRAYELMLGFYGIQLK 613
LE NHTYIQWLFPLRE G+N++AK LT E+E FK + E +R + AY++ML F+GI+L
Sbjct: 82 LEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIKRFLLAYKMMLEFFGIKLV 141
Query: 614 DRKTGRVCRAQNYQKRFQNLNWHSHNNLRITRMLKSLGELGLEHFQVPLTRFFLEETLVR 793
D KTG V RA N+Q+RFQ+LN HN LRITR+LKSLGELG E F+ PL +F L E LV
Sbjct: 142 D-KTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGYESFKSPLVKFILHEALVE 200
Query: 794 RELPGVRQSALDYFVFTVRCRHQRRELLYFAWEHFRPRCRFVWAPLEKLQ 943
+P ++QSAL+YFV+T+R R +RR+LL FA +H+ P F+W P +K Q
Sbjct: 201 NTIPNIKQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPKKEQ 250
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,175,596
Number of extensions: 1029859
Number of successful extensions: 6122
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6086
Number of HSP's successfully gapped: 3
Length of query: 516
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 409
Effective length of database: 15,307,552
Effective search space: 6260788768
Effective search space used: 6260788768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008798
(1548 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121312.1| PREDICTED: opioid growth factor receptor-lik... 261 6e-70
Alignment gi|XP_003362059.1| PREDICTED: hypothetical protein LOC100627586... 211 1e-54
>ref|XP_003121312.1| PREDICTED: opioid growth factor receptor-like protein 1 [Sus scrofa].
Length = 463
Score = 261 bits (668), Expect = 6e-70
Identities = 139/295 (47%), Positives = 186/295 (63%), Gaps = 2/295 (0%)
Frame = +2
Query: 167 GEARAPGTARAEAEETLRFCMPQVKVTGSRNWRAARDTRRYRHHYPDLVEPDGNGDMPNL 346
G+A A G A +E T P+ R++ AARD +YRH YP+ + D+ NL
Sbjct: 80 GDAEAEG-AEQGSESTEATAKPK------RSFYAARDLYKYRHQYPNFKDIRYQNDLSNL 132
Query: 347 SFYKNEMAFLPNGCFIEDLLKNWKEDYDLLEDNHTYIQWLFPLREPGVNWHAKPLTLQEV 526
FYKN++ F P+G +IE++L WK DY+ LE NHTYIQWLFPLRE G+N++AK LT E+
Sbjct: 133 RFYKNKIPFKPDGVYIEEVLNKWKGDYEKLEHNHTYIQWLFPLREQGLNFYAKELTTYEI 192
Query: 527 EAFKSSPEVKERLVRAYELMLGFYGIQLKDRKTGRVCRAQNYQKRFQNLNWHSHNNLRIT 706
E FK + E R + AY++ML F+GI+L D KTG V RA N+Q+RFQ+LN HN LRIT
Sbjct: 193 EEFKKTKEAIRRFLLAYKMMLEFFGIKLID-KTGNVARAVNWQERFQHLNESQHNYLRIT 251
Query: 707 RMLKSLGELGLEHFQVPLTRFFLEETLVRRELPGVRQSALDYFVFTVRCRHQRRELLYFA 886
R+LKSLGELG E F+ PL +F L E LV +P ++QSAL+YFV+T+R R +RR+LL FA
Sbjct: 252 RILKSLGELGYESFKSPLVKFILHEALVENTIPNIKQSALEYFVYTIRDRRERRKLLRFA 311
Query: 887 WEHFRPRCRFVWAPLEKLQK--FRPCSPPCSPRTGPRWAAKREKGPQDPVLEASA 1045
+H+ P F+W P K Q + P P +G K +D +SA
Sbjct: 312 QKHYTPSENFIWGPPRKEQSEGIKAPKTPAPPSSGHHSQMSMHKKSKDSKTSSSA 366
>ref|XP_003362059.1| PREDICTED: hypothetical protein LOC100627586, partial [Sus scrofa].
Length = 414
Score = 211 bits (536), Expect = 1e-54
Identities = 126/234 (53%), Positives = 127/234 (54%), Gaps = 1/234 (0%)
Frame = +2
Query: 299 YPDLVEPDGNGDMPNLSFYKNEMAFLPNGCFIEDLLKNWKEDYDLLEDNHTYIQWLFPLR 478
+ DLVEPDGNGDMPNLSFYKNEMAFLPN P
Sbjct: 216 FHDLVEPDGNGDMPNLSFYKNEMAFLPNA----------------------------PSG 247
Query: 479 EPGVNWHAKPLTLQEV-EAFKSSPEVKERLVRAYELMLGFYGIQLKDRKTGRVCRAQNYQ 655
A L L V AFKSSPEVKERLVRAYELMLGFYGIQ
Sbjct: 248 SSRGAIGAPTLGLDPVANAFKSSPEVKERLVRAYELMLGFYGIQ---------------- 291
Query: 656 KRFQNLNWHSHNNLRITRMLKSLGELGLEHFQVPLTRFFLEETLVRRELPGVRQSALDYF 835
HSHNNLRITRMLKSLGELGLEHF
Sbjct: 292 --------HSHNNLRITRMLKSLGELGLEHF----------------------------- 314
Query: 836 VFTVRCRHQRRELLYFAWEHFRPRCRFVWAPLEKLQKFRPCSPPCSPRTGPRWA 997
QRRELLYFAWEHFRPRCRFVWAPLEKLQKFRPCSPPCSPRTGPRWA
Sbjct: 315 --------QRRELLYFAWEHFRPRCRFVWAPLEKLQKFRPCSPPCSPRTGPRWA 360
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,530,072
Number of extensions: 809228
Number of successful extensions: 3916
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3882
Number of HSP's successfully gapped: 3
Length of query: 516
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 413
Effective length of database: 8,779,541
Effective search space: 3625950433
Effective search space used: 3625950433
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008798
(1548 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113550.3| opioid growth factor receptor [Mus musculus]. 501 e-142
Alignment gi|NP_001074548.1| opioid growth factor receptor-like protein 1... 262 6e-70
>ref|NP_113550.3| opioid growth factor receptor [Mus musculus].
Length = 633
Score = 501 bits (1289), Expect = e-142
Identities = 275/489 (56%), Positives = 331/489 (67%), Gaps = 9/489 (1%)
Frame = +2
Query: 83 MEDPDCDSTWXXXXXXXXXXPFSRADEGGEARAPGTARAEAEETLRFCMPQVKVTGSRNW 262
M+DP+CDSTW +AD+ + G +AEE R + Q ++T RNW
Sbjct: 1 MDDPECDSTWEDESEEDGED--GQADDTTDEDT-GDDDGDAEEA-RPSLFQSRMTRYRNW 56
Query: 263 RAARDTRRYRHHYPDLVEPDGNGDMPNLSFYKNEMAFLPNGCFIEDLLKNWKEDYDLLED 442
RA +D +RYRH+YPDL + D NGDM NLSFYKNE+ F PNG IED+L+NWK++YDLLE+
Sbjct: 57 RAMQDMQRYRHNYPDLTDQDCNGDMCNLSFYKNEICFQPNGFLIEDILQNWKDNYDLLEE 116
Query: 443 NHTYIQWLFPLREPGVNWHAKPLTLQEVEAFKSSPEVKERLVRAYELMLGFYGIQLKDRK 622
NH+YIQWLFPLREPGVNWHAKPLTL+EVEAFKSS EV+ERLVRAYELMLGFYGIQL+DR
Sbjct: 117 NHSYIQWLFPLREPGVNWHAKPLTLKEVEAFKSSKEVRERLVRAYELMLGFYGIQLEDRN 176
Query: 623 TGRVCRAQNYQKRFQNLNWHSHNNLRITRMLKSLGELGLEHFQVPLTRFFLEETLVRREL 802
TG VCRAQN+Q RF NLN HSHNNLRITR+LKSLGELGLEH+Q PL RFFLEETLV+ +L
Sbjct: 177 TGAVCRAQNFQPRFHNLNSHSHNNLRITRILKSLGELGLEHYQAPLVRFFLEETLVQHKL 236
Query: 803 PGVRQSALDYFVFTVRCRHQRRELLYFAWEHFRPRCRFVWAPLEKLQKFRPCSPPCSPRT 982
P VRQSALDYF+F VRCRHQRREL++FAWEHF+PR FVW P +KL++FRP P
Sbjct: 237 PSVRQSALDYFLFAVRCRHQRRELVHFAWEHFKPRREFVWGPRDKLRRFRP-QTISRPLM 295
Query: 983 GPRWAAKREKGPQDPVLEASAPGQTCXXXXXXXXXXXXXXXXXXXXXXXXADALERDPGD 1162
G A +++GP DP EA G+TC A +D G
Sbjct: 296 G-LGQADKDEGPGDPSQEAGTQGRTC------GSGRDLSGDSGTAEDLSLLSAKPQDVGT 348
Query: 1163 EAGGEQGPA-SPNPKESKKRKLEASLRERAPGEPGPSAL-EVEKIALNLEGCALSQGGLG 1336
G ++ A SP+PKESKKRKLE + +E+ PGEP P + EVEKIALNLEGCALS
Sbjct: 349 LDGDQRHEAKSPSPKESKKRKLEGNRQEQVPGEPDPQGVSEVEKIALNLEGCALS----- 403
Query: 1337 DXXXXXXXXXXXXXXXPCLQPPGTKVADEVRKRRKVDQGARDGAGVAATR-------PPA 1495
PCL +VA+EVRKRRKV++GA +G GVA+ P
Sbjct: 404 -----PTSQEPREAEQPCLV---ARVANEVRKRRKVEEGA-EGDGVASNTQVQASALSPT 454
Query: 1496 PSGCPEAKE 1522
PS CPE+++
Sbjct: 455 PSECPESQK 463
>ref|NP_001074548.1| opioid growth factor receptor-like protein 1 [Mus musculus].
Length = 464
Score = 262 bits (669), Expect = 6e-70
Identities = 142/325 (43%), Positives = 191/325 (58%), Gaps = 4/325 (1%)
Frame = +2
Query: 254 RNWRAARDTRRYRHHYPDLVEPDGNGDMPNLSFYKNEMAFLPNGCFIEDLLKNWKEDYDL 433
R++ AARD +YRH YP+ + D+ NL FYKN++ F P+G +IE++L WK DY+
Sbjct: 92 RSFYAARDLYKYRHQYPNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLNKWKGDYEK 151
Query: 434 LEDNHTYIQWLFPLREPGVNWHAKPLTLQEVEAFKSSPEVKERLVRAYELMLGFYGIQLK 613
LE NHTYIQWLFPLRE G+N++AK LT E+E FK + E R + AY++ML F+GI+L
Sbjct: 152 LEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFLLAYKMMLEFFGIKLI 211
Query: 614 DRKTGRVCRAQNYQKRFQNLNWHSHNNLRITRMLKSLGELGLEHFQVPLTRFFLEETLVR 793
D KTG V RA N+Q+RFQ+LN HN LRITR+LKSLGELG E F+ PL +F L E LV
Sbjct: 212 D-KTGNVARAGNWQERFQHLNESQHNYLRITRILKSLGELGYESFKSPLVKFILHEALVE 270
Query: 794 RELPGVRQSALDYFVFTVRCRHQRRELLYFAWEHFRPRCRFVWAPLEKLQKFRPCSPPCS 973
+P ++QSAL+YFV+T+R R +RR+LL FA +H+ P F+W P +K
Sbjct: 271 NTIPNIKQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPKK------------ 318
Query: 974 PRTGPRWAAKREKGPQDPVLEAS-APGQTCXXXXXXXXXXXXXXXXXXXXXXXXADALER 1150
+R K + P L AS + GQT R
Sbjct: 319 ------ELPERSKAQKTPTLPASGSNGQTSTHKKSKDSKISPGASHVNSKSVEEKKGASR 372
Query: 1151 DPGDEA---GGEQGPASPNPKESKK 1216
+PG+EA E G P P+ ++K
Sbjct: 373 EPGEEADKPSPEPGSGDPKPRNTEK 397
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,455,511
Number of extensions: 806802
Number of successful extensions: 4366
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4341
Number of HSP's successfully gapped: 2
Length of query: 516
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 410
Effective length of database: 12,433,743
Effective search space: 5097834630
Effective search space used: 5097834630
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008798
(1548 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031372.2| opioid growth factor receptor [Homo sapiens]. 582 e-166
Alignment gi|NP_078852.3| opioid growth factor receptor-like protein 1 [H... 258 1e-68
>ref|NP_031372.2| opioid growth factor receptor [Homo sapiens].
Length = 677
Score = 582 bits (1500), Expect = e-166
Identities = 309/506 (61%), Positives = 352/506 (69%), Gaps = 18/506 (3%)
Frame = +2
Query: 83 MEDPDCDSTWXXXXXXXXXXPFSRADEGGEARA----PGTARAEAEETLRFCMP---QVK 241
M+DPDCDSTW ++G A A G E+EE R P Q +
Sbjct: 1 MDDPDCDSTWEEDEEDAEDAEDEDCEDGEAAGARDADAGDEDEESEEP-RAARPSSFQSR 59
Query: 242 VTGSRNWRAARDTRRYRHHYPDLVEPDGNGDMPNLSFYKNEMAFLPNGCFIEDLLKNWKE 421
+TGSRNWRA RD RYRH+YPDLVE D NGD PNLSFY+NE+ FLPNGCFIED+L+NW +
Sbjct: 60 MTGSRNWRATRDMCRYRHNYPDLVERDCNGDTPNLSFYRNEIRFLPNGCFIEDILQNWTD 119
Query: 422 DYDLLEDNHTYIQWLFPLREPGVNWHAKPLTLQEVEAFKSSPEVKERLVRAYELMLGFYG 601
+YDLLEDNH+YIQWLFPLREPGVNWHAKPLTL+EVE FKSS E++ERLVRAYELMLGFYG
Sbjct: 120 NYDLLEDNHSYIQWLFPLREPGVNWHAKPLTLREVEVFKSSQEIQERLVRAYELMLGFYG 179
Query: 602 IQLKDRKTGRVCRAQNYQKRFQNLNWHSHNNLRITRMLKSLGELGLEHFQVPLTRFFLEE 781
I+L+DR TG V RAQNYQKRFQNLNW SHNNLRITR+LKSLGELGLEHFQ PL RFFLEE
Sbjct: 180 IRLEDRGTGTVGRAQNYQKRFQNLNWRSHNNLRITRILKSLGELGLEHFQAPLVRFFLEE 239
Query: 782 TLVRRELPGVRQSALDYFVFTVRCRHQRRELLYFAWEHFRPRCRFVWAPLEKLQKFRPCS 961
TLVRRELPGVRQSALDYF+F VRCRHQRR+L++FAWEHFRPRC+FVW P +KL++F+P S
Sbjct: 240 TLVRRELPGVRQSALDYFMFAVRCRHQRRQLVHFAWEHFRPRCKFVWGPQDKLRRFKPSS 299
Query: 962 PPCSPRTGPRWAAKREKGPQDPVLEASAPGQTCXXXXXXXXXXXXXXXXXXXXXXXXADA 1141
P P G R + E P DP EAS G+TC A
Sbjct: 300 LP-HPLEGSR-KVEEEGSPGDPDHEASTQGRTCGPEHSKGGGRVDEGPQPRSVEPQDAGP 357
Query: 1142 LERDPGDEAG--GEQGPASPNPKESKKRKLEASLRERAPGEPGP-SALEVEKIALNLEGC 1312
LER GDEAG GE P +PKESKKRKLE S RE+ P EPGP SA EVEKIALNLEGC
Sbjct: 358 LERSQGDEAGGHGEDRPEPLSPKESKKRKLELSRREQPPTEPGPQSASEVEKIALNLEGC 417
Query: 1313 ALSQGGLGDXXXXXXXXXXXXXXXPCLQPPGTKVADEVRKRRKVDQGARDGAGVAA---- 1480
ALSQG L PC QP G +VAD+VRKRRKVD+GA D A VA+
Sbjct: 418 ALSQGSLRTGTQEVGGQDPGEAVQPCRQPLGARVADKVRKRRKVDEGAGDSAAVASGGAQ 477
Query: 1481 ----TRPPAPSGCPEAKEGQSEIKEE 1546
PAPSG P+A ++ ++E+
Sbjct: 478 TLALAGSPAPSGHPKAGHSENGVEED 503
>ref|NP_078852.3| opioid growth factor receptor-like protein 1 [Homo sapiens].
Length = 451
Score = 258 bits (658), Expect = 1e-68
Identities = 137/303 (45%), Positives = 180/303 (59%), Gaps = 20/303 (6%)
Frame = +2
Query: 95 DCDSTWXXXXXXXXXXPFSRADEGGEARA--------------PGTARAEAEETLRFCMP 232
DCDSTW P G + PG + A E+
Sbjct: 18 DCDSTWQTDSEPEPEEPGPGGGSEGPGQESEQPAQPPEQAGGRPGASPAPDEDAEAAGAE 77
Query: 233 Q------VKVTGSRNWRAARDTRRYRHHYPDLVEPDGNGDMPNLSFYKNEMAFLPNGCFI 394
Q R++ AARD +YRH YP+ + D+ NL FYKN++ F P+G +I
Sbjct: 78 QGGDSTEATAKPKRSFYAARDLYKYRHQYPNFKDIRYQNDLSNLRFYKNKIPFKPDGVYI 137
Query: 395 EDLLKNWKEDYDLLEDNHTYIQWLFPLREPGVNWHAKPLTLQEVEAFKSSPEVKERLVRA 574
E++L WK DY+ LE NHTYIQWLFPLRE G+N++AK LT E+E FK + E R + A
Sbjct: 138 EEVLSKWKGDYEKLEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFLLA 197
Query: 575 YELMLGFYGIQLKDRKTGRVCRAQNYQKRFQNLNWHSHNNLRITRMLKSLGELGLEHFQV 754
Y++ML F+GI+L D KTG V RA N+Q+RFQ+LN HN LRITR+LKSLGELG E F+
Sbjct: 198 YKMMLEFFGIKLTD-KTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGYESFKS 256
Query: 755 PLTRFFLEETLVRRELPGVRQSALDYFVFTVRCRHQRRELLYFAWEHFRPRCRFVWAPLE 934
PL +F L E LV +P ++QSAL+YFV+T+R R +RR+LL FA +H+ P F+W P
Sbjct: 257 PLVKFILHEALVENTIPNIKQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPR 316
Query: 935 KLQ 943
K Q
Sbjct: 317 KEQ 319
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,042,239
Number of extensions: 985144
Number of successful extensions: 5730
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5690
Number of HSP's successfully gapped: 2
Length of query: 516
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 409
Effective length of database: 14,770,016
Effective search space: 6040936544
Effective search space used: 6040936544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008798
(1548 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896248.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 379 e-102
>gb|GL896248.1| Sus scrofa unplaced genomic scaffold chrU_scaffold607
Length = 23362
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 855 ggcaccagcgccgcgagctgctgtacttcgcctgggagcacttccggccccgctgcaggt 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16975 ggcaccagcgccgcgagctgctgtacttcgcctgggagcacttccggccccgctgcaggt 17034
Query: 915 tcgtctgggcgccgctggagaagctgcagaagttcaggccctgctctccgccctgctcgc 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17035 tcgtctgggcgccgctggagaagctgcagaagttcaggccctgctctccgccctgctcgc 17094
Query: 975 cccggaccggcccacggtgggccgccaagcgggagaagggccctcaggaccccgtcctcg 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17095 cccggaccggcccacggtgggccgccaagcgggagaagggccctcaggaccccgtcctcg 17154
Query: 1035 aggccagcgcc 1045
|||||||||||
Sbjct: 17155 aggccagcgcc 17165
Score = 287 bits (145), Expect = 9e-75
Identities = 163/168 (97%), Gaps = 2/168 (1%)
Strand = Plus / Plus
Query: 1383 agccctgcctccagccccccgggaccaaggtggccgatgaggtgaggaagc--gaaggaa 1440
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 17506 agccctgcccccagccccccgggaccaaggtggccgatgaggtgaggaagcncgaaggaa 17565
Query: 1441 ggtggaccagggtgccagggatggcgccggggtggctgccacccggccccctgccccgtc 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17566 ggtggaccagggtgccagggatggcgccggggtggctgccacccggccccctgccccgtc 17625
Query: 1501 agggtgcccagaggccaaggaaggccagagtgagatcaaggaggaagc 1548
||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 17626 agggtgcccagaggccaaggagggccagagtgagatcaaagaggaagc 17673
Score = 214 bits (108), Expect = 1e-52
Identities = 111/112 (99%)
Strand = Plus / Plus
Query: 1121 gagccccaggaggcggacgccttggagagggacccaggcgatgaggcgggtggggagcag 1180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17266 gagccccaggaggcggacgccttggagagggacccgggcgatgaggcgggtggggagcag 17325
Query: 1181 gggcccgcgtctccaaaccccaaggagagcaagaagaggaagctggaggcga 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17326 gggcccgcgtctccaaaccccaaggagagcaagaagaggaagctggaggcga 17377
Score = 198 bits (100), Expect = 6e-48
Identities = 103/104 (99%)
Strand = Plus / Plus
Query: 678 ggcacagccacaacaacctccgcatcacgcgcatgctcaagtctctgggtgagctgggcc 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16771 ggcacagccacaacaacctccgcatcacgcgcatgctcaagtctctgggtgagctgggcc 16830
Query: 738 tggagcacttccaggtgcccctgacccgcttcttcctggaggag 781
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 16831 tggagcacttccaggtgcccctgaccctcttcttcctggaggag 16874
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 528 aggcctttaaaagctccccggaggtcaaggagcgcttggtccgggcctacgagctcatgc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16054 aggcctttaaaagctccccggaggtcaaggagcgcttggtccgggcctacgagctcatgc 16113
Query: 588 tgggcttctacgggatccagctcaaggaccg 618
|||||||||||||||||||||||||||||||
Sbjct: 16114 tgggcttctacgggatccagctcaaggaccg 16144
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 304 ggacttggtagagccagatggcaatggtgacatgccaaacctgagtttctacaaaaacga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13978 ggacttggtagagccagatggcaatggtgacatgccaaacctgagtttctacaaaaacga 14037
Query: 364 gatggccttcctgcccaacgg 384
|||||||||||||||||||||
Sbjct: 14038 gatggccttcctgcccaacgg 14058
Score = 101 bits (51), Expect = 1e-18
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 230 ccccaggtcaaggtgaccgggtctcgaaactggcgagcggcgcgggacacg 280
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13274 ccccaggtcaaggtgaccgggtctcgaaactggcgagcggcgcgggacacg 13324
Score = 69.9 bits (35), Expect = 4e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 645 agaactaccagaaacgcttccagaacctcaactgg 679
|||||||||||||||||||||||||||||||||||
Sbjct: 16245 agaactaccagaaacgcttccagaacctcaactgg 16279
Score = 60.0 bits (30), Expect = 4e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 462 ggctgtttcctctgcgggagccaggggtga 491
||||||||||||||||||||||||||||||
Sbjct: 15338 ggctgtttcctctgcgggagccaggggtga 15367
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,968,109
Number of extensions: 288
Number of successful extensions: 288
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 9
Length of query: 1548
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1527
Effective length of database: 2,808,413,156
Effective search space: 4288446889212
Effective search space used: 4288446889212
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)