Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008803
(1007 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076865.1| 116 kDa U5 small nuclear ribonucleoprotein c... 531 e-151
Alignment gi|XP_002696652.1| PREDICTED: elongation factor Tu GTP binding ... 132 6e-31
Alignment gi|XP_606001.5| PREDICTED: elongation factor Tu GTP binding dom... 132 6e-31
Alignment gi|NP_001068589.1| elongation factor 2 [Bos taurus]. 127 1e-29
Alignment gi|XP_002696653.1| PREDICTED: elongation factor Tu GTP binding ... 97 2e-20
Alignment gi|NP_001095537.1| GTP-binding protein GUF1 homolog [Bos taurus]. 86 5e-17
Alignment gi|NP_001095579.1| ribosome-releasing factor 2, mitochondrial [... 72 8e-13
Alignment gi|NP_001193078.1| elongation factor G, mitochondrial [Bos taur... 66 6e-11
Alignment gi|XP_002685002.1| PREDICTED: G elongation factor, mitochondria... 66 6e-11
Alignment gi|NP_776818.1| translation initiation factor IF-2, mitochondri... 55 7e-08
>ref|NP_001076865.1| 116 kDa U5 small nuclear ribonucleoprotein component [Bos taurus].
Length = 972
Score = 531 bits (1367), Expect = e-151
Identities = 268/304 (88%), Positives = 268/304 (88%)
Frame = +2
Query: 95 MDTDLYDEFGNYIGPXXXXXXXXXXXGRXXXXXXXXXXXXXXXXXXXXXXXHPGMEVVLH 274
MDTDLYDEFGNYIGP GR HPGMEVVLH
Sbjct: 1 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEVDEDEDDDDVGDHDEDHPGMEVVLH 60
Query: 275 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 454
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMD LA
Sbjct: 61 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDSLA 120
Query: 455 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 634
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
Sbjct: 121 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 180
Query: 635 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 814
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
Sbjct: 181 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 240
Query: 815 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 994
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
Sbjct: 241 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 300
Query: 995 FPLL 1006
PLL
Sbjct: 301 SPLL 304
>ref|XP_002696652.1| PREDICTED: elongation factor Tu GTP binding domain containing 1
isoform 1 [Bos taurus].
Length = 1129
Score = 132 bits (331), Expect = 6e-31
Identities = 71/183 (38%), Positives = 110/183 (60%)
Frame = +2
Query: 440 MDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQ 619
+D + L N+ IRN+ + H+ HGKT DCLI ++ I R L Y D EQ
Sbjct: 6 LDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLIS-SNGIISSRLAGKLRYMDSREDEQ 64
Query: 620 ERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGV 799
RG+ +KS+ +++ + K YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV
Sbjct: 65 VRGITMKSSAISLHYAEGD-KEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGV 123
Query: 800 MLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD 979
T+ +++ A E + + INKIDRLI+ELK P +AY L++I++++N L T
Sbjct: 124 CPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTS 183
Query: 980 ENL 988
+ L
Sbjct: 184 KVL 186
>ref|XP_606001.5| PREDICTED: elongation factor Tu GTP binding domain containing 1,
partial [Bos taurus].
Length = 1107
Score = 132 bits (331), Expect = 6e-31
Identities = 71/183 (38%), Positives = 110/183 (60%)
Frame = +2
Query: 440 MDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQ 619
+D + L N+ IRN+ + H+ HGKT DCLI ++ I R L Y D EQ
Sbjct: 6 LDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLIS-SNGIISSRLAGKLRYMDSREDEQ 64
Query: 620 ERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGV 799
RG+ +KS+ +++ + K YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV
Sbjct: 65 VRGITMKSSAISLHYAEGD-KEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGV 123
Query: 800 MLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD 979
T+ +++ A E + + INKIDRLI+ELK P +AY L++I++++N L T
Sbjct: 124 CPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTS 183
Query: 980 ENL 988
+ L
Sbjct: 184 KVL 186
>ref|NP_001068589.1| elongation factor 2 [Bos taurus].
Length = 858
Score = 127 bits (320), Expect = 1e-29
Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 16/207 (7%)
Frame = +2
Query: 434 YEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFT 613
+ +D + +MD IRN+++ H+ HGK+ D L+ + R + +TD
Sbjct: 4 FTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETR-FTDTRKD 62
Query: 614 EQERGVGIKSTPVTV-----------VLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRIS 760
EQER + IKST +++ + G +L N++D+PGHV+FS EVTA LR++
Sbjct: 63 EQERCITIKSTAISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVT 122
Query: 761 DGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIV 940
DG ++ +D GV + TE +++ A+ ER+ + +NK+DR +LEL+L P + Y + IV
Sbjct: 123 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQRIV 182
Query: 941 DEVNGLISMYSTDE-----NLILFPLL 1006
+ VN +IS Y E N+++ P+L
Sbjct: 183 ENVNVIISTYGEGESGPMGNIMIDPVL 209
>ref|XP_002696653.1| PREDICTED: elongation factor Tu GTP binding domain containing 1
isoform 2 [Bos taurus].
Length = 1078
Score = 97.1 bits (240), Expect = 2e-20
Identities = 46/107 (42%), Positives = 70/107 (65%)
Frame = +2
Query: 668 DTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERL 847
D K YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV T+ +++ A E +
Sbjct: 29 DHGDKEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENI 88
Query: 848 AVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENL 988
+ INKIDRLI+ELK P +AY L++I++++N L T + L
Sbjct: 89 RPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVL 135
>ref|NP_001095537.1| GTP-binding protein GUF1 homolog [Bos taurus].
Length = 669
Score = 85.9 bits (211), Expect = 5e-17
Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 4/185 (2%)
Frame = +2
Query: 335 VQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLADLMDNS----ELIRNVTLCG 502
V E + L P + P + T E P Y + +D S E RN ++
Sbjct: 19 VTEAARKGLLWPHLAPARG---TAAESRAPDRCYSSADRKEKIDMSCFPVENTRNFSIIA 75
Query: 503 HLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGK 682
H+ HGK+ D L+E T + + ++ + D L E+ERG+ +K+ ++ + +GK
Sbjct: 76 HVDHGKSTLADRLLELTGAIDKTKNNKQVL--DKLQVERERGITVKAQTASLFY-NYEGK 132
Query: 683 SYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVC 862
YL N++DTPGHV+FS EV+ L GV+L +DA EG+ T A + +L++
Sbjct: 133 QYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQTVANFFLAFEAQLSIIPV 192
Query: 863 INKID 877
INKID
Sbjct: 193 INKID 197
>ref|NP_001095579.1| ribosome-releasing factor 2, mitochondrial [Bos taurus].
Length = 777
Score = 72.0 bits (175), Expect = 8e-13
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = +2
Query: 479 IRNVTLCGHLHHGKTCFVDCLIEQT-HPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVT 655
IRN+ + H+ GKT + ++ + + D TD + E+ERG+ I+S VT
Sbjct: 70 IRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVT 129
Query: 656 VVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAV 835
D KG Y N++DTPGHV+F+ EV LR+ DG V DA+ GV T + + A
Sbjct: 130 F---DWKG--YRINLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 184
Query: 836 QERLAVTVCINKIDRL 883
+ ++ +NK+D++
Sbjct: 185 KHKVPRICFLNKMDKI 200
>ref|NP_001193078.1| elongation factor G, mitochondrial [Bos taurus].
Length = 753
Score = 65.9 bits (159), Expect = 6e-11
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Frame = +2
Query: 470 SELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIR----KRYDQDLCYTDILFTEQERGVGI 637
+E IRN+ + H+ GKT + ++ T + K D D + E++RG+ I
Sbjct: 46 NEKIRNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITI 105
Query: 638 KSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTER 817
+S + D NI+DTPGHV+F+ EV LR+ DG VL + A GV T
Sbjct: 106 QSAATYTMWKDVN-----INIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMT 160
Query: 818 LIKHAVQERLAVTVCINKIDRL 883
+ + + + INK+DR+
Sbjct: 161 VNRQMRRYNVPFLTFINKLDRV 182
>ref|XP_002685002.1| PREDICTED: G elongation factor, mitochondrial 1 [Bos taurus].
Length = 753
Score = 65.9 bits (159), Expect = 6e-11
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Frame = +2
Query: 470 SELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIR----KRYDQDLCYTDILFTEQERGVGI 637
+E IRN+ + H+ GKT + ++ T + K D D + E++RG+ I
Sbjct: 46 NEKIRNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITI 105
Query: 638 KSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTER 817
+S + D NI+DTPGHV+F+ EV LR+ DG VL + A GV T
Sbjct: 106 QSAATYTMWKDVN-----INIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMT 160
Query: 818 LIKHAVQERLAVTVCINKIDRL 883
+ + + + INK+DR+
Sbjct: 161 VNRQMRRYNVPFLTFINKLDRV 182
>ref|NP_776818.1| translation initiation factor IF-2, mitochondrial precursor [Bos
taurus].
Length = 727
Score = 55.5 bits (132), Expect = 7e-08
Identities = 40/131 (30%), Positives = 61/131 (46%)
Frame = +2
Query: 488 VTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLP 667
VT+ GH+ HGKT +D ++RK + + Q G + S P
Sbjct: 183 VTIMGHVDHGKTTLLD--------KLRKT---QVAAMEAGGITQHIGAFLVSLP------ 225
Query: 668 DTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERL 847
G+ F +DTPGH FS G +++D V+L + A +GVM T I+HA +
Sbjct: 226 --SGEKITF--LDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHV 281
Query: 848 AVTVCINKIDR 880
+ + INK D+
Sbjct: 282 PIVLAINKCDK 292
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,309,461
Number of extensions: 921623
Number of successful extensions: 2526
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2507
Number of HSP's successfully gapped: 10
Length of query: 335
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,273,310
Effective search space: 3311407920
Effective search space used: 3311407920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008803
(1007 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548058.2| PREDICTED: similar to 116 kDa U5 small nuclear ... 534 e-152
Alignment gi|XP_533949.2| PREDICTED: similar to Elongation factor 2 (EF-2... 127 1e-29
Alignment gi|XP_850111.1| PREDICTED: similar to elongation factor Tu GTP ... 127 2e-29
Alignment gi|XP_536210.2| PREDICTED: similar to elongation factor Tu GTP ... 96 7e-20
Alignment gi|XP_539246.2| PREDICTED: similar to CG32527-PB, isoform B [Ca... 86 4e-17
Alignment gi|XP_535276.2| PREDICTED: similar to mitochondrial elongation ... 71 2e-12
Alignment gi|XP_534320.2| PREDICTED: similar to G elongation factor, mito... 67 3e-11
Alignment gi|XP_531830.2| PREDICTED: similar to mitochondrial translation... 55 8e-08
>ref|XP_548058.2| PREDICTED: similar to 116 kDa U5 small nuclear ribonucleoprotein
component (U5 snRNP-specific protein, 116 kDa) (U5-116
kDa) (Elongation factor Tu GTP binding domain protein 2)
[Canis familiaris].
Length = 972
Score = 534 bits (1375), Expect = e-152
Identities = 269/304 (88%), Positives = 269/304 (88%)
Frame = +2
Query: 95 MDTDLYDEFGNYIGPXXXXXXXXXXXGRXXXXXXXXXXXXXXXXXXXXXXXHPGMEVVLH 274
MDTDLYDEFGNYIGP GR HPGMEVVLH
Sbjct: 1 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDEDHPGMEVVLH 60
Query: 275 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 454
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
Sbjct: 61 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 120
Query: 455 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 634
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
Sbjct: 121 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 180
Query: 635 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 814
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
Sbjct: 181 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 240
Query: 815 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 994
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
Sbjct: 241 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 300
Query: 995 FPLL 1006
PLL
Sbjct: 301 SPLL 304
>ref|XP_533949.2| PREDICTED: similar to Elongation factor 2 (EF-2) [Canis familiaris].
Length = 698
Score = 127 bits (320), Expect = 1e-29
Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 16/207 (7%)
Frame = +2
Query: 434 YEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFT 613
+ +D + +MD IRN+++ H+ HGK+ D L+ + R + +TD
Sbjct: 4 FTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETR-FTDTRKD 62
Query: 614 EQERGVGIKSTPVTV-----------VLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRIS 760
EQER + IKST +++ + G +L N++D+PGHV+FS EVTA LR++
Sbjct: 63 EQERCITIKSTAISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVT 122
Query: 761 DGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIV 940
DG ++ +D GV + TE +++ A+ ER+ + +NK+DR +LEL+L P + Y + IV
Sbjct: 123 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQRIV 182
Query: 941 DEVNGLISMYSTDE-----NLILFPLL 1006
+ VN +IS Y E N+++ P+L
Sbjct: 183 ENVNVIISTYGEGESGPMGNIMIDPVL 209
>ref|XP_850111.1| PREDICTED: similar to elongation factor Tu GTP binding domain
containing 1 isoform 6 [Canis familiaris].
Length = 1128
Score = 127 bits (319), Expect = 2e-29
Identities = 68/183 (37%), Positives = 109/183 (59%)
Frame = +2
Query: 440 MDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQ 619
++ + L N+ IRN+ + H+ HGKT DCLI ++ I R L Y D EQ
Sbjct: 6 LEKMIHLQKNTANIRNICVLAHVDHGKTTLADCLIS-SNGIISSRLAGKLRYMDSREDEQ 64
Query: 620 ERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGV 799
RG+ +KS+ +++ + YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV
Sbjct: 65 VRGITMKSSAISLHYAKDN-EDYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGV 123
Query: 800 MLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD 979
T+ +++ A E + + INK+DRLI+ELK P +AY L++I++++N L T
Sbjct: 124 CPQTQAVLRQAWLENIRPVLVINKLDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTS 183
Query: 980 ENL 988
+ L
Sbjct: 184 KVL 186
>ref|XP_536210.2| PREDICTED: similar to elongation factor Tu GTP binding domain
containing 1 isoform 5 [Canis familiaris].
Length = 1077
Score = 95.5 bits (236), Expect = 7e-20
Identities = 44/107 (41%), Positives = 70/107 (65%)
Frame = +2
Query: 668 DTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERL 847
D + YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV T+ +++ A E +
Sbjct: 29 DHDNEDYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENI 88
Query: 848 AVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENL 988
+ INK+DRLI+ELK P +AY L++I++++N L T + L
Sbjct: 89 RPVLVINKLDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVL 135
>ref|XP_539246.2| PREDICTED: similar to CG32527-PB, isoform B [Canis familiaris].
Length = 890
Score = 86.3 bits (212), Expect = 4e-17
Identities = 50/135 (37%), Positives = 78/135 (57%)
Frame = +2
Query: 473 ELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPV 652
E RN ++ H+ HGK+ D L+E T + + ++ + D L E+ERG+ +K+
Sbjct: 287 ENTRNFSIIAHVDHGKSTLADRLLELTGAIDKTKNNKQVL--DKLQVERERGITVKAQTA 344
Query: 653 TVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHA 832
++ + +GK YL N++DTPGHV+FS EV+ L GV+L +DA EG+ T A
Sbjct: 345 SLFY-NCEGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQTVANFFLA 403
Query: 833 VQERLAVTVCINKID 877
+ +L+V INKID
Sbjct: 404 FEAQLSVIPVINKID 418
>ref|XP_535276.2| PREDICTED: similar to mitochondrial elongation factor G2 isoform 1
[Canis familiaris].
Length = 780
Score = 70.9 bits (172), Expect = 2e-12
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +2
Query: 479 IRNVTLCGHLHHGKTCFVDCLIEQT-HPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVT 655
IRN+ + H+ GKT + ++ + + D TD + E+ERG+ I+S VT
Sbjct: 70 IRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVT 129
Query: 656 VVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAV 835
D KG Y N++DTPGHV+F+ EV LR+ DG V DA+ GV T + + A
Sbjct: 130 F---DWKG--YRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 184
Query: 836 QERLAVTVCINKIDR 880
+ ++ +NK+D+
Sbjct: 185 KHKVPRICFLNKMDK 199
>ref|XP_534320.2| PREDICTED: similar to G elongation factor, mitochondrial 1 [Canis
familiaris].
Length = 771
Score = 66.6 bits (161), Expect = 3e-11
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Frame = +2
Query: 470 SELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIR----KRYDQDLCYTDILFTEQERGVGI 637
+E IRN+ + H+ GKT + ++ T + K D D + E++RG+ I
Sbjct: 63 NEKIRNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITI 122
Query: 638 KSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTER 817
+S + D NI+DTPGHV+F+ EV LR+ DG VL + A GV T
Sbjct: 123 QSAATYTMWKDVN-----INIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMT 177
Query: 818 LIKHAVQERLAVTVCINKIDRL 883
+ + + + INK+DR+
Sbjct: 178 VNRQMKRYNVPFLTFINKLDRM 199
>ref|XP_531830.2| PREDICTED: similar to mitochondrial translational initiation factor
2 precursor [Canis familiaris].
Length = 727
Score = 55.5 bits (132), Expect = 8e-08
Identities = 41/131 (31%), Positives = 63/131 (48%)
Frame = +2
Query: 488 VTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLP 667
VT+ GH+ HGKT +D ++RK T + E G+ V LP
Sbjct: 183 VTIMGHVDHGKTTLLD--------KLRK--------TQVAAMEAG-GITQHIGAFLVSLP 225
Query: 668 DTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERL 847
+ ++L DTPGH FS G +++D V+L + A +GVM T I+HA ++
Sbjct: 226 SGERITFL----DTPGHAAFSAMRARGAQVTDIVILVVAADDGVMKQTVESIQHARDAQV 281
Query: 848 AVTVCINKIDR 880
+ + INK D+
Sbjct: 282 PIVLAINKCDK 292
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,841,746
Number of extensions: 950466
Number of successful extensions: 2729
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2716
Number of HSP's successfully gapped: 8
Length of query: 335
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 232
Effective length of database: 15,440,896
Effective search space: 3582287872
Effective search space used: 3582287872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008803
(1007 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358060.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 534 e-152
Alignment gi|XP_003131380.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 534 e-152
Alignment gi|XP_003131381.2| PREDICTED: 116 kDa U5 small nuclear ribonucl... 456 e-128
Alignment gi|XP_003361187.1| PREDICTED: elongation factor Tu GTP-binding ... 129 3e-30
Alignment gi|XP_001926980.3| PREDICTED: elongation factor Tu GTP-binding ... 129 3e-30
Alignment gi|XP_003354050.1| PREDICTED: elongation factor 2 [Sus scrofa]. 127 7e-30
Alignment gi|XP_003361188.1| PREDICTED: elongation factor Tu GTP-binding ... 96 3e-20
Alignment gi|XP_003128999.1| PREDICTED: translation factor GUF1, mitochon... 85 7e-17
Alignment gi|XP_003123750.1| PREDICTED: ribosome-releasing factor 2, mito... 72 6e-13
Alignment gi|XP_003358691.1| PREDICTED: elongation factor G, mitochondria... 66 3e-11
>ref|XP_003358060.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component [Sus
scrofa].
Length = 972
Score = 534 bits (1375), Expect = e-152
Identities = 269/304 (88%), Positives = 269/304 (88%)
Frame = +2
Query: 95 MDTDLYDEFGNYIGPXXXXXXXXXXXGRXXXXXXXXXXXXXXXXXXXXXXXHPGMEVVLH 274
MDTDLYDEFGNYIGP GR HPGMEVVLH
Sbjct: 1 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDEDDDDDVGDHDEEHPGMEVVLH 60
Query: 275 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 454
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
Sbjct: 61 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 120
Query: 455 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 634
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
Sbjct: 121 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 180
Query: 635 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 814
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
Sbjct: 181 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 240
Query: 815 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 994
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
Sbjct: 241 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 300
Query: 995 FPLL 1006
PLL
Sbjct: 301 SPLL 304
>ref|XP_003131380.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
isoform 1 [Sus scrofa].
Length = 972
Score = 534 bits (1375), Expect = e-152
Identities = 269/304 (88%), Positives = 269/304 (88%)
Frame = +2
Query: 95 MDTDLYDEFGNYIGPXXXXXXXXXXXGRXXXXXXXXXXXXXXXXXXXXXXXHPGMEVVLH 274
MDTDLYDEFGNYIGP GR HPGMEVVLH
Sbjct: 1 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDEDDDDDVGDHDEEHPGMEVVLH 60
Query: 275 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 454
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
Sbjct: 61 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 120
Query: 455 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 634
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
Sbjct: 121 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 180
Query: 635 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 814
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
Sbjct: 181 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 240
Query: 815 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 994
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
Sbjct: 241 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 300
Query: 995 FPLL 1006
PLL
Sbjct: 301 SPLL 304
>ref|XP_003131381.2| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
isoform 2 [Sus scrofa].
Length = 924
Score = 456 bits (1172), Expect = e-128
Identities = 241/304 (79%), Positives = 246/304 (80%)
Frame = +2
Query: 95 MDTDLYDEFGNYIGPXXXXXXXXXXXGRXXXXXXXXXXXXXXXXXXXXXXXHPGMEVVLH 274
MDTDLYDEFGNYIGP E+
Sbjct: 1 MDTDLYDEFGNYIGP----------------------------------------ELDSD 20
Query: 275 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 454
ED ++ G E + + EEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
Sbjct: 21 ED-------DDELGRETKDL-DEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 72
Query: 455 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 634
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
Sbjct: 73 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 132
Query: 635 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 814
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
Sbjct: 133 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 192
Query: 815 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 994
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
Sbjct: 193 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 252
Query: 995 FPLL 1006
PLL
Sbjct: 253 SPLL 256
>ref|XP_003361187.1| PREDICTED: elongation factor Tu GTP-binding domain-containing
protein 1-like isoform 1 [Sus scrofa].
Length = 1120
Score = 129 bits (324), Expect = 3e-30
Identities = 70/183 (38%), Positives = 109/183 (59%)
Frame = +2
Query: 440 MDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQ 619
+D + L N+ IRN+ + H+ HGKT DCLI ++ I R L Y D EQ
Sbjct: 6 LDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLIS-SNGIISSRLAGKLRYMDSREDEQ 64
Query: 620 ERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGV 799
RG+ +KS+ +++ + YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV
Sbjct: 65 IRGITMKSSAISLHYAKDD-EEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGV 123
Query: 800 MLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD 979
T+ +++ A E + + INKIDRLI+ELK P +AY L++I++++N L T
Sbjct: 124 CPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTS 183
Query: 980 ENL 988
+ L
Sbjct: 184 KVL 186
>ref|XP_001926980.3| PREDICTED: elongation factor Tu GTP-binding domain-containing
protein 1 [Sus scrofa].
Length = 665
Score = 129 bits (324), Expect = 3e-30
Identities = 70/183 (38%), Positives = 109/183 (59%)
Frame = +2
Query: 440 MDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQ 619
+D + L N+ IRN+ + H+ HGKT DCLI ++ I R L Y D EQ
Sbjct: 6 LDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLIS-SNGIISSRLAGKLRYMDSREDEQ 64
Query: 620 ERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGV 799
RG+ +KS+ +++ + YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV
Sbjct: 65 IRGITMKSSAISLHYAKDD-EEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGV 123
Query: 800 MLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD 979
T+ +++ A E + + INKIDRLI+ELK P +AY L++I++++N L T
Sbjct: 124 CPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTS 183
Query: 980 ENL 988
+ L
Sbjct: 184 KVL 186
>ref|XP_003354050.1| PREDICTED: elongation factor 2 [Sus scrofa].
Length = 858
Score = 127 bits (320), Expect = 7e-30
Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 16/207 (7%)
Frame = +2
Query: 434 YEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFT 613
+ +D + +MD IRN+++ H+ HGK+ D L+ + R + +TD
Sbjct: 4 FTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETR-FTDTRKD 62
Query: 614 EQERGVGIKSTPVTV-----------VLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRIS 760
EQER + IKST +++ + G +L N++D+PGHV+FS EVTA LR++
Sbjct: 63 EQERCITIKSTAISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVT 122
Query: 761 DGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIV 940
DG ++ +D GV + TE +++ A+ ER+ + +NK+DR +LEL+L P + Y + IV
Sbjct: 123 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQRIV 182
Query: 941 DEVNGLISMYSTDE-----NLILFPLL 1006
+ VN +IS Y E N+++ P+L
Sbjct: 183 ENVNVIISTYGEGESGPMGNIMIDPVL 209
>ref|XP_003361188.1| PREDICTED: elongation factor Tu GTP-binding domain-containing
protein 1-like isoform 2 [Sus scrofa].
Length = 1069
Score = 95.9 bits (237), Expect = 3e-20
Identities = 45/107 (42%), Positives = 70/107 (65%)
Frame = +2
Query: 668 DTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERL 847
D + YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV T+ +++ A E +
Sbjct: 29 DHDDEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENI 88
Query: 848 AVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENL 988
+ INKIDRLI+ELK P +AY L++I++++N L T + L
Sbjct: 89 RPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVL 135
>ref|XP_003128999.1| PREDICTED: translation factor GUF1, mitochondrial [Sus scrofa].
Length = 669
Score = 84.7 bits (208), Expect = 7e-17
Identities = 49/135 (36%), Positives = 77/135 (57%)
Frame = +2
Query: 473 ELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPV 652
E RN ++ H+ HGK+ D +E T + + ++ + D L E+ERG+ +K+
Sbjct: 66 ENTRNFSIIAHVDHGKSTLADRFLELTGAIDKTKNNKQVL--DKLQVERERGITVKAQTA 123
Query: 653 TVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHA 832
++ + +GK YL N++DTPGHV+FS EV+ L GV+L +DA EG+ T A
Sbjct: 124 SLFY-NCEGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQTVANFFLA 182
Query: 833 VQERLAVTVCINKID 877
+ +L+V INKID
Sbjct: 183 FEAQLSVIPVINKID 197
>ref|XP_003123750.1| PREDICTED: ribosome-releasing factor 2, mitochondrial-like [Sus
scrofa].
Length = 776
Score = 71.6 bits (174), Expect = 6e-13
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +2
Query: 479 IRNVTLCGHLHHGKTCFVDCLIEQT-HPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVT 655
IRN+ + H+ GKT + ++ + + D TD + E+ERG+ I+S VT
Sbjct: 69 IRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVT 128
Query: 656 VVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAV 835
D KG Y N++DTPGHV+F+ EV LR+ DG V DA+ GV T + + A
Sbjct: 129 F---DWKG--YRINLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 183
Query: 836 QERLAVTVCINKIDR 880
+ ++ +NK+D+
Sbjct: 184 KHKIPRICFLNKMDK 198
>ref|XP_003358691.1| PREDICTED: elongation factor G, mitochondrial-like [Sus scrofa].
Length = 754
Score = 65.9 bits (159), Expect = 3e-11
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Frame = +2
Query: 470 SELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIR----KRYDQDLCYTDILFTEQERGVGI 637
+E IRN+ + H+ GKT + ++ T + K D D + E++RG+ I
Sbjct: 47 NEKIRNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITI 106
Query: 638 KSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTER 817
+S + D NI+DTPGHV+F+ EV LR+ DG +L + A GV T
Sbjct: 107 QSAATYTLWKDVN-----INIIDTPGHVDFTIEVERALRVLDGAILVLCAVGGVQCQTMT 161
Query: 818 LIKHAVQERLAVTVCINKIDRL 883
+ + + + INK+DR+
Sbjct: 162 VNRQMQRYSVPFLTFINKLDRM 183
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,689,616
Number of extensions: 585600
Number of successful extensions: 1675
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1658
Number of HSP's successfully gapped: 12
Length of query: 335
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,879,129
Effective search space: 2095474444
Effective search space used: 2095474444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008803
(1007 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103465.1| 116 kDa U5 small nuclear ribonucleoprotein c... 534 e-152
Alignment gi|NP_035561.1| 116 kDa U5 small nuclear ribonucleoprotein comp... 530 e-151
Alignment gi|NP_001153144.1| elongation factor Tu GTP-binding domain-cont... 129 4e-30
Alignment gi|NP_780526.2| elongation factor Tu GTP-binding domain-contain... 129 4e-30
Alignment gi|NP_031933.1| elongation factor 2 [Mus musculus]. 127 1e-29
Alignment gi|NP_766299.1| translation factor Guf1, mitochondrial [Mus mus... 86 5e-17
Alignment gi|NP_001139515.1| ribosome-releasing factor 2, mitochondrial i... 72 7e-13
Alignment gi|NP_796240.3| ribosome-releasing factor 2, mitochondrial isof... 72 7e-13
Alignment gi|NP_613057.2| elongation factor G, mitochondrial precursor [M... 66 5e-11
Alignment gi|NP_598528.2| translation initiation factor IF-2, mitochondri... 57 2e-08
>ref|NP_001103465.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform b [Mus
musculus].
Length = 972
Score = 534 bits (1375), Expect = e-152
Identities = 269/304 (88%), Positives = 269/304 (88%)
Frame = +2
Query: 95 MDTDLYDEFGNYIGPXXXXXXXXXXXGRXXXXXXXXXXXXXXXXXXXXXXXHPGMEVVLH 274
MDTDLYDEFGNYIGP GR HPGMEVVLH
Sbjct: 1 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDEDEDEDDVGEHEDDHPGMEVVLH 60
Query: 275 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 454
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
Sbjct: 61 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 120
Query: 455 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 634
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
Sbjct: 121 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 180
Query: 635 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 814
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
Sbjct: 181 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 240
Query: 815 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 994
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
Sbjct: 241 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 300
Query: 995 FPLL 1006
PLL
Sbjct: 301 SPLL 304
>ref|NP_035561.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform a [Mus
musculus].
Length = 971
Score = 530 bits (1364), Expect = e-151
Identities = 269/304 (88%), Positives = 269/304 (88%)
Frame = +2
Query: 95 MDTDLYDEFGNYIGPXXXXXXXXXXXGRXXXXXXXXXXXXXXXXXXXXXXXHPGMEVVLH 274
MDTDLYDEFGNYIGP GR HPGMEVVLH
Sbjct: 1 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEDEDEDEDDVGEHEDD-HPGMEVVLH 59
Query: 275 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 454
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
Sbjct: 60 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 119
Query: 455 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 634
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
Sbjct: 120 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 179
Query: 635 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 814
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
Sbjct: 180 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 239
Query: 815 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 994
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
Sbjct: 240 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 299
Query: 995 FPLL 1006
PLL
Sbjct: 300 SPLL 303
>ref|NP_001153144.1| elongation factor Tu GTP-binding domain-containing protein 1 [Mus
musculus].
Length = 1127
Score = 129 bits (324), Expect = 4e-30
Identities = 70/183 (38%), Positives = 110/183 (60%)
Frame = +2
Query: 440 MDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQ 619
+D + L N+ IRN+ + H+ HGKT DCLI ++ I R L Y D EQ
Sbjct: 6 VDKMIRLQKNTANIRNICVLAHVDHGKTTLADCLIS-SNGIISSRLAGKLRYMDSREDEQ 64
Query: 620 ERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGV 799
RG+ +KS+ +++ + + YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV
Sbjct: 65 VRGITMKSSAISLHYAEGH-EEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGV 123
Query: 800 MLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD 979
T+ +++ A E + + INKIDRLI+ELK P +AY L++I++++N L T
Sbjct: 124 CPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTS 183
Query: 980 ENL 988
+ L
Sbjct: 184 KVL 186
>ref|NP_780526.2| elongation factor Tu GTP-binding domain-containing protein 1 [Mus
musculus].
Length = 1127
Score = 129 bits (324), Expect = 4e-30
Identities = 70/183 (38%), Positives = 110/183 (60%)
Frame = +2
Query: 440 MDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQ 619
+D + L N+ IRN+ + H+ HGKT DCLI ++ I R L Y D EQ
Sbjct: 6 VDKMIRLQKNTANIRNICVLAHVDHGKTTLADCLIS-SNGIISSRLAGKLRYMDSREDEQ 64
Query: 620 ERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGV 799
RG+ +KS+ +++ + + YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV
Sbjct: 65 VRGITMKSSAISLHYAEGH-EEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGV 123
Query: 800 MLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD 979
T+ +++ A E + + INKIDRLI+ELK P +AY L++I++++N L T
Sbjct: 124 CPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTS 183
Query: 980 ENL 988
+ L
Sbjct: 184 KVL 186
>ref|NP_031933.1| elongation factor 2 [Mus musculus].
Length = 858
Score = 127 bits (320), Expect = 1e-29
Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 16/207 (7%)
Frame = +2
Query: 434 YEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFT 613
+ +D + +MD IRN+++ H+ HGK+ D L+ + R + +TD
Sbjct: 4 FTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETR-FTDTRKD 62
Query: 614 EQERGVGIKSTPVTV-----------VLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRIS 760
EQER + IKST +++ + G +L N++D+PGHV+FS EVTA LR++
Sbjct: 63 EQERCITIKSTAISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVT 122
Query: 761 DGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIV 940
DG ++ +D GV + TE +++ A+ ER+ + +NK+DR +LEL+L P + Y + IV
Sbjct: 123 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQRIV 182
Query: 941 DEVNGLISMYSTDE-----NLILFPLL 1006
+ VN +IS Y E N+++ P+L
Sbjct: 183 ENVNVIISTYGEGESGPMGNIMIDPVL 209
>ref|NP_766299.1| translation factor Guf1, mitochondrial [Mus musculus].
Length = 651
Score = 85.9 bits (211), Expect = 5e-17
Identities = 51/135 (37%), Positives = 77/135 (57%)
Frame = +2
Query: 473 ELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPV 652
E IRN ++ H+ HGK+ D L+E T + + ++ + D L E+ERG+ +K+
Sbjct: 48 EDIRNFSIIAHVDHGKSTLADRLLELTGTIDKTKKNKQVL--DKLQVERERGITVKAQTA 105
Query: 653 TVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHA 832
++ GK YL N++DTPGHV+FS EV+ L GV+L +DA EG+ T A
Sbjct: 106 SLFY-SFGGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQTVANFFLA 164
Query: 833 VQERLAVTVCINKID 877
+ +L+V INKID
Sbjct: 165 FEAQLSVIPVINKID 179
>ref|NP_001139515.1| ribosome-releasing factor 2, mitochondrial isoform 2 [Mus
musculus].
Length = 741
Score = 72.0 bits (175), Expect = 7e-13
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Frame = +2
Query: 479 IRNVTLCGHLHHGKTCFVDCLIEQT-HPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVT 655
IRN+ + H+ GKT + ++ + + D TD + E+ERG+ I+S VT
Sbjct: 70 IRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVT 129
Query: 656 VVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAV 835
+ D KG Y N++DTPGHV+F+ EV LR+ DG V DA+ GV T + + A
Sbjct: 130 L---DWKG--YRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 184
Query: 836 QERLAVTVCINKIDR 880
+ ++ +NK+D+
Sbjct: 185 KHKIPRICFLNKMDK 199
>ref|NP_796240.3| ribosome-releasing factor 2, mitochondrial isoform 1 [Mus
musculus].
Length = 779
Score = 72.0 bits (175), Expect = 7e-13
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Frame = +2
Query: 479 IRNVTLCGHLHHGKTCFVDCLIEQT-HPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVT 655
IRN+ + H+ GKT + ++ + + D TD + E+ERG+ I+S VT
Sbjct: 70 IRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVT 129
Query: 656 VVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAV 835
+ D KG Y N++DTPGHV+F+ EV LR+ DG V DA+ GV T + + A
Sbjct: 130 L---DWKG--YRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 184
Query: 836 QERLAVTVCINKIDR 880
+ ++ +NK+D+
Sbjct: 185 KHKIPRICFLNKMDK 199
>ref|NP_613057.2| elongation factor G, mitochondrial precursor [Mus musculus].
Length = 751
Score = 65.9 bits (159), Expect = 5e-11
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Frame = +2
Query: 470 SELIRNVTLCGHLHHGKTCFVDCLIEQTHP-----EIRKRYDQDLCYTDILFTEQERGVG 634
+E IRN+ + H+ GKT + ++ T E++ + D D + E++RG+
Sbjct: 44 NEKIRNIGISAHIDSGKTTLTERVLYYTGRIATMHEVKGK-DGVGAVMDSMELERQRGIT 102
Query: 635 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 814
I+S + D NI+DTPGHV+F+ EV LR+ DG VL + A GV T
Sbjct: 103 IQSAATYTMWKDIN-----INIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTM 157
Query: 815 RLIKHAVQERLAVTVCINKIDRL 883
+ + + + INK+DR+
Sbjct: 158 TVSRQMKRYNVPFLTFINKLDRM 180
>ref|NP_598528.2| translation initiation factor IF-2, mitochondrial precursor [Mus
musculus].
Length = 727
Score = 57.0 bits (136), Expect = 2e-08
Identities = 41/131 (31%), Positives = 60/131 (45%)
Frame = +2
Query: 488 VTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLP 667
VT+ GH+ HGKT +D L E + ++ Q G + S P
Sbjct: 183 VTVMGHVDHGKTTLLDKLRET-----------QVAAMEVGGITQHIGAFLVSLP------ 225
Query: 668 DTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERL 847
G+ F +DTPGH FS G +++D VVL + A +GVM T I+HA +
Sbjct: 226 --SGEKITF--LDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAEV 281
Query: 848 AVTVCINKIDR 880
+ + INK D+
Sbjct: 282 PIILAINKCDK 292
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,831,521
Number of extensions: 792021
Number of successful extensions: 2225
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2204
Number of HSP's successfully gapped: 10
Length of query: 335
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 233
Effective length of database: 12,553,887
Effective search space: 2925055671
Effective search space used: 2925055671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008803
(1007 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004238.3| 116 kDa U5 small nuclear ribonucleoprotein comp... 534 e-152
Alignment gi|NP_001136077.1| 116 kDa U5 small nuclear ribonucleoprotein c... 509 e-144
Alignment gi|NP_078856.4| elongation factor Tu GTP-binding domain-contain... 131 9e-31
Alignment gi|NP_001952.1| elongation factor 2 [Homo sapiens]. 127 2e-29
Alignment gi|NP_001035700.1| elongation factor Tu GTP-binding domain-cont... 96 5e-20
Alignment gi|NP_068746.2| translation factor GUF1, mitochondrial [Homo sa... 88 1e-17
Alignment gi|NP_733792.1| ribosome-releasing factor 2, mitochondrial isof... 70 2e-12
Alignment gi|NP_733781.1| ribosome-releasing factor 2, mitochondrial isof... 70 2e-12
Alignment gi|NP_115756.2| ribosome-releasing factor 2, mitochondrial isof... 70 2e-12
Alignment gi|NP_079272.4| elongation factor G, mitochondrial precursor [H... 67 3e-11
>ref|NP_004238.3| 116 kDa U5 small nuclear ribonucleoprotein component isoform a [Homo
sapiens].
Length = 972
Score = 534 bits (1375), Expect = e-152
Identities = 269/304 (88%), Positives = 269/304 (88%)
Frame = +2
Query: 95 MDTDLYDEFGNYIGPXXXXXXXXXXXGRXXXXXXXXXXXXXXXXXXXXXXXHPGMEVVLH 274
MDTDLYDEFGNYIGP GR HPGMEVVLH
Sbjct: 1 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH 60
Query: 275 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 454
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
Sbjct: 61 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA 120
Query: 455 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 634
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
Sbjct: 121 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG 180
Query: 635 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 814
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
Sbjct: 181 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE 240
Query: 815 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 994
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
Sbjct: 241 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL 300
Query: 995 FPLL 1006
PLL
Sbjct: 301 SPLL 304
>ref|NP_001136077.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform b [Homo
sapiens].
Length = 937
Score = 509 bits (1312), Expect = e-144
Identities = 252/253 (99%), Positives = 252/253 (99%)
Frame = +2
Query: 248 HPGMEVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPV 427
HPGMEVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPV
Sbjct: 17 HPGMEVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPV 76
Query: 428 TVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDIL 607
TVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDIL
Sbjct: 77 TVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDIL 136
Query: 608 FTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDA 787
FTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDA
Sbjct: 137 FTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDA 196
Query: 788 AEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISM 967
AEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISM
Sbjct: 197 AEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISM 256
Query: 968 YSTDENLILFPLL 1006
YSTDENLIL PLL
Sbjct: 257 YSTDENLILSPLL 269
>ref|NP_078856.4| elongation factor Tu GTP-binding domain-containing protein 1
isoform 1 [Homo sapiens].
Length = 1120
Score = 131 bits (330), Expect = 9e-31
Identities = 71/183 (38%), Positives = 110/183 (60%)
Frame = +2
Query: 440 MDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQ 619
+D + L N+ IRN+ + H+ HGKT DCLI ++ I R L Y D EQ
Sbjct: 6 LDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLIS-SNGIISSRLAGKLRYMDSREDEQ 64
Query: 620 ERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGV 799
RG+ +KS+ +++ T + YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV
Sbjct: 65 IRGITMKSSAISLHYA-TGNEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGV 123
Query: 800 MLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD 979
T+ +++ A E + + INKIDRLI+ELK P +AY L++I++++N L T
Sbjct: 124 CPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTS 183
Query: 980 ENL 988
+ L
Sbjct: 184 KVL 186
>ref|NP_001952.1| elongation factor 2 [Homo sapiens].
Length = 858
Score = 127 bits (319), Expect = 2e-29
Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 16/207 (7%)
Frame = +2
Query: 434 YEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFT 613
+ +D + +MD IRN+++ H+ HGK+ D L+ + R + +TD
Sbjct: 4 FTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETR-FTDTRKD 62
Query: 614 EQERGVGIKSTPVTV-----------VLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRIS 760
EQER + IKST +++ + G +L N++D+PGHV+FS EVTA LR++
Sbjct: 63 EQERCITIKSTAISLFYELSENDLNFIKQSKDGAGFLINLIDSPGHVDFSSEVTAALRVT 122
Query: 761 DGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIV 940
DG ++ +D GV + TE +++ A+ ER+ + +NK+DR +LEL+L P + Y + IV
Sbjct: 123 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQRIV 182
Query: 941 DEVNGLISMYSTDE-----NLILFPLL 1006
+ VN +IS Y E N+++ P+L
Sbjct: 183 ENVNVIISTYGEGESGPMGNIMIDPVL 209
>ref|NP_001035700.1| elongation factor Tu GTP-binding domain-containing protein 1
isoform 2 [Homo sapiens].
Length = 1069
Score = 95.9 bits (237), Expect = 5e-20
Identities = 45/107 (42%), Positives = 70/107 (65%)
Frame = +2
Query: 668 DTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERL 847
D + YL N++D+PGHV+FS EV+ +RI DG ++ +DA EGV T+ +++ A E +
Sbjct: 29 DHGNEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENI 88
Query: 848 AVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENL 988
+ INKIDRLI+ELK P +AY L++I++++N L T + L
Sbjct: 89 RPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVL 135
>ref|NP_068746.2| translation factor GUF1, mitochondrial [Homo sapiens].
Length = 669
Score = 88.2 bits (217), Expect = 1e-17
Identities = 51/135 (37%), Positives = 79/135 (58%)
Frame = +2
Query: 473 ELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPV 652
E IRN ++ H+ HGK+ D L+E T + + ++ + D L E+ERG+ +K+
Sbjct: 66 ENIRNFSIVAHVDHGKSTLADRLLELTGTIDKTKNNKQVL--DKLQVERERGITVKAQTA 123
Query: 653 TVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHA 832
++ + +GK YL N++DTPGHV+FS EV+ L GV+L +DA EG+ T A
Sbjct: 124 SLFY-NCEGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQTVANFFLA 182
Query: 833 VQERLAVTVCINKID 877
+ +L+V INKID
Sbjct: 183 FEAQLSVIPVINKID 197
>ref|NP_733792.1| ribosome-releasing factor 2, mitochondrial isoform 2 [Homo
sapiens].
Length = 732
Score = 70.5 bits (171), Expect = 2e-12
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Frame = +2
Query: 479 IRNVTLCGHLHHGKTCFVDCLIEQT-HPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVT 655
IRN+ + H+ GKT + ++ + + D TD + E+ERG+ I+S VT
Sbjct: 70 IRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVT 129
Query: 656 VVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAV 835
D KG Y N++DTPGHV+F+ EV LR+ DG V DA+ GV T + + A
Sbjct: 130 F---DWKG--YRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 184
Query: 836 QERLAVTVCINKIDR 880
+ + +NK+D+
Sbjct: 185 KHNIPRICFLNKMDK 199
>ref|NP_733781.1| ribosome-releasing factor 2, mitochondrial isoform 3 [Homo
sapiens].
Length = 513
Score = 70.5 bits (171), Expect = 2e-12
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Frame = +2
Query: 479 IRNVTLCGHLHHGKTCFVDCLIEQT-HPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVT 655
IRN+ + H+ GKT + ++ + + D TD + E+ERG+ I+S VT
Sbjct: 70 IRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVT 129
Query: 656 VVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAV 835
D KG Y N++DTPGHV+F+ EV LR+ DG V DA+ GV T + + A
Sbjct: 130 F---DWKG--YRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 184
Query: 836 QERLAVTVCINKIDR 880
+ + +NK+D+
Sbjct: 185 KHNIPRICFLNKMDK 199
>ref|NP_115756.2| ribosome-releasing factor 2, mitochondrial isoform 1 [Homo
sapiens].
Length = 779
Score = 70.5 bits (171), Expect = 2e-12
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Frame = +2
Query: 479 IRNVTLCGHLHHGKTCFVDCLIEQT-HPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVT 655
IRN+ + H+ GKT + ++ + + D TD + E+ERG+ I+S VT
Sbjct: 70 IRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVT 129
Query: 656 VVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAV 835
D KG Y N++DTPGHV+F+ EV LR+ DG V DA+ GV T + + A
Sbjct: 130 F---DWKG--YRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 184
Query: 836 QERLAVTVCINKIDR 880
+ + +NK+D+
Sbjct: 185 KHNIPRICFLNKMDK 199
>ref|NP_079272.4| elongation factor G, mitochondrial precursor [Homo sapiens].
Length = 751
Score = 66.6 bits (161), Expect = 3e-11
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Frame = +2
Query: 470 SELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIR----KRYDQDLCYTDILFTEQERGVGI 637
+E IRN+ + H+ GKT + ++ T + K D D + E++RG+ I
Sbjct: 43 NEKIRNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITI 102
Query: 638 KSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTER 817
+S + D NI+DTPGHV+F+ EV LR+ DG VL + A GV T
Sbjct: 103 QSAATYTMWKDVN-----INIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMT 157
Query: 818 LIKHAVQERLAVTVCINKIDRL 883
+ + + + INK+DR+
Sbjct: 158 VNRQMKRYNVPFLTFINKLDRM 179
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,234,236
Number of extensions: 937175
Number of successful extensions: 2512
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2494
Number of HSP's successfully gapped: 12
Length of query: 335
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,901,872
Effective search space: 3457234304
Effective search space used: 3457234304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008803
(1007 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 333 1e-88
>Sscrofa_Chr12
|| Length = 63588571
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 198 agatggacgacgaggacgacgatgacgatgtaggagatcatgatgaagagcaccctggga 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18730391 agatggacgacgaggacgacgatgacgatgtaggagatcatgatgaagagcaccctggga 18730450
Query: 258 tggaggtggtgctgcatgaggacaagaagtactaccccacagccgaggaggtgtacggcc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18730451 tggaggtggtgctgcatgaggacaagaagtactaccccacagccgaggaggtgtacggcc 18730510
Query: 318 ccgaagtggagaccatagttcaggaggaggacacgcagcctctcaccg 365
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18730511 ccgaagtggagaccatagttcaggaggaggacacgcagcctctcaccg 18730558
Score = 331 bits (167), Expect = 4e-88
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 797 gtgatgctgaacacagagcggctgatcaagcacgccgtgcaggagaggctggcggtcacc 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18740365 gtgatgctgaacacagagcggctgatcaagcacgccgtgcaggagaggctggcggtcacc 18740424
Query: 857 gtgtgcatcaacaagattgaccggctaatcctggagctgaagctgcctcccactgacgcg 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18740425 gtgtgcatcaacaagattgaccggctaatcctggagctgaagctgcctcccactgacgcg 18740484
Query: 917 tattacaagctgcgtcacatcgtagatgaggtcaatggattgataag 963
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18740485 tattacaagctgcgtcacatcgtagatgaggtcaatggattgataag 18740531
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 89 agcatcatggatactgacttatatgatgagtttgggaattatattggaccagagcttgat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18722490 agcatcatggatactgacttatatgatgagtttgggaattatattggaccagagcttgat 18722549
Query: 149 tctgatgaagatgatgatgaattgggcagagagaccaaagaccttgatgag 199
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18722550 tctgatgaagatgatgatgaattgggcagagagaccaaagaccttgatgag 18722600
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 621 agaggggtgttggcatcaaaagtactcctgtgacagtggtcttgccagataccaaaggaa 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18735349 agaggggtgttggcatcaaaagtactcctgtgacagtggtcttgccagataccaaaggaa 18735408
Query: 681 aatcctatctcttcaatatcatggacactccagg 714
||||||||||||||||||||||||||||||||||
Sbjct: 18735409 aatcctatctcttcaatatcatggacactccagg 18735442
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 711 cagggcatgtgaatttttctgatgaagtcacagctggcttgcgcatctcagatggagtgg 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18736682 cagggcatgtgaatttttctgatgaagtcacagctggcttgcgcatctcagatggagtgg 18736741
Query: 771 tcctgttcattgatgctgccgagggcgtga 800
||||||||||||||||||||||||||||||
Sbjct: 18736742 tcctgttcattgatgctgccgagggcgtga 18736771
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 8 ggcgggcgcaggtggtgcggcggcgtggggcggaagcaaggcctcaggcggcagacttgg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18719276 ggcgggcgcaggtggtgcggcggcgtggggcggaagcaaggcctcaggcggcagacttgg 18719335
Query: 68 tgtttttggcccagcaacgggag 90
|||||||||||||||||||||||
Sbjct: 18719336 tgtttttggcccagcaacgggag 18719358
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 365 gaacccattattaagccagtgaaaaccaagaaattcactctgatggagcagacactacct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18731199 gaacccattattaagccagtgaaaaccaagaaattcactctgatggagcagacactacct 18731258
Query: 425 gtcacagtgtatgaaatgga 444
||||||||||||||||||||
Sbjct: 18731259 gtcacagtgtatgaaatgga 18731278
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 445 tttcttggcagatctgatggataactcggagctcatcagaaacgtgacgctctgtggcca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18731949 tttcttggcagatctgatggataactcggagctcatcagaaacgtgacgctctgtggcca 18732008
Query: 505 tctccaccatggcaag 520
||||||||||||||||
Sbjct: 18732009 tctccaccatggcaag 18732024
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 519 agacgtgttttgtagattgtttaatagagcagactcacccggaaatcagaaagcgctatg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18732492 agacgtgttttgtagattgtttaatagagcagactcacccggaaatcagaaagcgctatg 18732551
Query: 579 accaagat 586
||||||||
Sbjct: 18732552 accaagat 18732559
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 962 agcatgtattccaccgacgagaacctgatccttttcccgctcctgg 1007
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 18742259 agcatgtattccaccgacgagaacctgatcctttccccgctcctgg 18742304
Score = 71.9 bits (36), Expect = 6e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 587 ctgtgttacacagacatcctcttcacagagcaagag 622
||||||||||||||||||||||||||||||||||||
Sbjct: 18733321 ctgtgttacacagacatcctcttcacagagcaagag 18733356
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,102,496
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 11
Length of query: 1007
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 986
Effective length of database: 2,808,413,156
Effective search space: 2769095371816
Effective search space used: 2769095371816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)