Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008805
(1479 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039970.1| ribonuclease H1 [Bos taurus]. 452 e-127
>ref|NP_001039970.1| ribonuclease H1 [Bos taurus].
Length = 280
Score = 452 bits (1163), Expect = e-127
Identities = 220/265 (83%), Positives = 235/265 (88%)
Frame = +3
Query: 132 GCRALAMFYAVRRGRKAGVFLTWNECRAQVDRFPAARFKKFATEEEAWAFVRNSASHEGS 311
GCR+LAMFYAVRRGRKAGVFLTW+ECRAQVDRFPAARFKKFATEEEAWAFVR S S S
Sbjct: 17 GCRSLAMFYAVRRGRKAGVFLTWDECRAQVDRFPAARFKKFATEEEAWAFVRRSESPSDS 76
Query: 312 EGQGNGQVQESHVKANKRPREPQDEDEVEKAELPAKHVKQSAGPPPPVGKDTFSYMGEFV 491
EGQ V+E K +KR REP DEDE AE AKHV+QSA P PPV KDTFSYMG+ V
Sbjct: 77 EGQKTKHVEEPQAKVSKRLREPLDEDE--DAEACAKHVRQSAEPLPPVSKDTFSYMGDSV 134
Query: 492 VVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKALELAKAQ 671
VVYTDGCCSSNGR+RARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKA+E AKAQ
Sbjct: 135 VVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKAQ 194
Query: 672 NISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTHKEVVNKEDFQELERLAQGMDVQWMH 851
+I+KLVLYTDSMFTINGIT+WV GWK+NGWRTST KEV NKEDF ELERLA+GMD+QWMH
Sbjct: 195 DITKLVLYTDSMFTINGITTWVKGWKQNGWRTSTGKEVTNKEDFAELERLARGMDIQWMH 254
Query: 852 VPGHAGFIGNEEADRLAREGAKQPA 926
VPGH+GF GNEEADRLAREGAKQPA
Sbjct: 255 VPGHSGFRGNEEADRLAREGAKQPA 279
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,552,636
Number of extensions: 1597588
Number of successful extensions: 6540
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6511
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 387
Effective length of database: 14,174,046
Effective search space: 5485355802
Effective search space used: 5485355802
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008805
(1479 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532858.2| PREDICTED: similar to Ribonuclease H1 (RNase H1... 447 e-126
>ref|XP_532858.2| PREDICTED: similar to Ribonuclease H1 (RNase H1) (Ribonuclease H
type II) [Canis familiaris].
Length = 285
Score = 447 bits (1151), Expect = e-126
Identities = 219/284 (77%), Positives = 236/284 (83%)
Frame = +3
Query: 69 MTRLLDXXXXXXXXXXRCSGRGCRALAMFYAVRRGRKAGVFLTWNECRAQVDRFPAARFK 248
MTRLL CS RGC +L+MFYAVRRGRKAGVF TW+ECRAQVDRFPAARFK
Sbjct: 1 MTRLLGAARRVVLAAVSCSARGCSSLSMFYAVRRGRKAGVFQTWSECRAQVDRFPAARFK 60
Query: 249 KFATEEEAWAFVRNSASHEGSEGQGNGQVQESHVKANKRPREPQDEDEVEKAELPAKHVK 428
KFATEEEAWAFVR A +GSEG N +ES VKA+KR REP D +E AE AKH++
Sbjct: 61 KFATEEEAWAFVRKPAGLDGSEGPENKHEKESQVKASKRLREPSDGEE--NAEPRAKHMR 118
Query: 429 QSAGPPPPVGKDTFSYMGEFVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGR 608
Q+ PPV KD FSYMGEFVVVYTDGCCSSNGRRRARAGIGVYWGPGHP NVGIRLPGR
Sbjct: 119 QNTESMPPVSKDMFSYMGEFVVVYTDGCCSSNGRRRARAGIGVYWGPGHPWNVGIRLPGR 178
Query: 609 QTNQRAEIHAACKALELAKAQNISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTHKEVV 788
QTNQRAEIHAACKA+E AKAQNI KLVLYTDSMFTINGIT+WV GWKKNGW+TST KEV+
Sbjct: 179 QTNQRAEIHAACKAIEQAKAQNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVI 238
Query: 789 NKEDFQELERLAQGMDVQWMHVPGHAGFIGNEEADRLAREGAKQ 920
NKEDF LE+L QGMD+QWMHVPGH+GF GNEEADRLAREGAKQ
Sbjct: 239 NKEDFVALEQLTQGMDIQWMHVPGHSGFTGNEEADRLAREGAKQ 282
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,681,591
Number of extensions: 1462100
Number of successful extensions: 6766
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6723
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 386
Effective length of database: 15,307,552
Effective search space: 5908715072
Effective search space used: 5908715072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008805
(1479 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230610.1| ribonuclease H1 [Sus scrofa]. 576 e-164
>ref|NP_001230610.1| ribonuclease H1 [Sus scrofa].
Length = 287
Score = 576 bits (1484), Expect = e-164
Identities = 277/287 (96%), Positives = 277/287 (96%)
Frame = +3
Query: 69 MTRLLDXXXXXXXXXXRCSGRGCRALAMFYAVRRGRKAGVFLTWNECRAQVDRFPAARFK 248
MTRLLD RCSGRGCRALAMFYAVRRGRKAGVFLTWNECRAQVDRFPAARFK
Sbjct: 1 MTRLLDVVHRVAVSVVRCSGRGCRALAMFYAVRRGRKAGVFLTWNECRAQVDRFPAARFK 60
Query: 249 KFATEEEAWAFVRNSASHEGSEGQGNGQVQESHVKANKRPREPQDEDEVEKAELPAKHVK 428
KFATEEEAWAFVRNSASHEGSEGQGNGQVQESHVKANKRPREPQDEDEVEKAELPAKHVK
Sbjct: 61 KFATEEEAWAFVRNSASHEGSEGQGNGQVQESHVKANKRPREPQDEDEVEKAELPAKHVK 120
Query: 429 QSAGPPPPVGKDTFSYMGEFVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGR 608
QSAGPPPPVGKDTFSYMGEFVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGR
Sbjct: 121 QSAGPPPPVGKDTFSYMGEFVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGR 180
Query: 609 QTNQRAEIHAACKALELAKAQNISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTHKEVV 788
QTNQRAEIHAACKALELAKAQNISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTHKEVV
Sbjct: 181 QTNQRAEIHAACKALELAKAQNISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTHKEVV 240
Query: 789 NKEDFQELERLAQGMDVQWMHVPGHAGFIGNEEADRLAREGAKQPAC 929
NKEDFQELERLAQGMDVQWMHVPGHAGFIGNEEADRLAREGAKQPAC
Sbjct: 241 NKEDFQELERLAQGMDVQWMHVPGHAGFIGNEEADRLAREGAKQPAC 287
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,894,171
Number of extensions: 1304148
Number of successful extensions: 4350
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4320
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 390
Effective length of database: 8,779,541
Effective search space: 3424020990
Effective search space used: 3424020990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008805
(1479 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035405.2| ribonuclease H1 [Mus musculus]. 424 e-119
>ref|NP_035405.2| ribonuclease H1 [Mus musculus].
Length = 285
Score = 424 bits (1090), Expect = e-119
Identities = 202/264 (76%), Positives = 225/264 (85%)
Frame = +3
Query: 129 RGCRALAMFYAVRRGRKAGVFLTWNECRAQVDRFPAARFKKFATEEEAWAFVRNSASHEG 308
RG L MFYAVRRGR+ GVFL+W+EC+AQVDRFPAARFKKFATE+EAWAFVR+S+S +G
Sbjct: 20 RGICGLGMFYAVRRGRRTGVFLSWSECKAQVDRFPAARFKKFATEDEAWAFVRSSSSPDG 79
Query: 309 SEGQGNGQVQESHVKANKRPREPQDEDEVEKAELPAKHVKQSAGPPPPVGKDTFSYMGEF 488
S+GQ + Q+S K +KRPREP E E E E KH +Q P V KD FSYMGE
Sbjct: 80 SKGQESAHEQKSQAKTSKRPREPLGEGE-ELPEPGPKHTRQDTEPSAVVSKDAFSYMGES 138
Query: 489 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKALELAKA 668
VVVYTDGCCSSNGR+RARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKA+ AKA
Sbjct: 139 VVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIMQAKA 198
Query: 669 QNISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTHKEVVNKEDFQELERLAQGMDVQWM 848
QNISKLVLYTDSMFTINGIT+WV GWKKNGWRTST K+V+NKEDF EL+ L QGMD+QWM
Sbjct: 199 QNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGMDIQWM 258
Query: 849 HVPGHAGFIGNEEADRLAREGAKQ 920
H+PGH+GF+GNEEADRLAREGAKQ
Sbjct: 259 HIPGHSGFVGNEEADRLAREGAKQ 282
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,652,505
Number of extensions: 1191028
Number of successful extensions: 5456
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5414
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 388
Effective length of database: 12,463,779
Effective search space: 4835946252
Effective search space used: 4835946252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008805
(1479 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002927.2| ribonuclease H1 [Homo sapiens]. 445 e-125
>ref|NP_002927.2| ribonuclease H1 [Homo sapiens].
Length = 286
Score = 445 bits (1145), Expect = e-125
Identities = 215/264 (81%), Positives = 227/264 (85%)
Frame = +3
Query: 129 RGCRALAMFYAVRRGRKAGVFLTWNECRAQVDRFPAARFKKFATEEEAWAFVRNSASHEG 308
RG R MFYAVRRGRK GVFLTWNECRAQVDRFPAARFKKFATE+EAWAFVR SAS E
Sbjct: 20 RGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEV 79
Query: 309 SEGQGNGQVQESHVKANKRPREPQDEDEVEKAELPAKHVKQSAGPPPPVGKDTFSYMGEF 488
SEG N QES KA+KR REP D D E AE AKH+K S P PPV +DTFSYMG+F
Sbjct: 80 SEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDF 139
Query: 489 VVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKALELAKA 668
VVVYTDGCCSSNGRRR RAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKA+E AK
Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199
Query: 669 QNISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTHKEVVNKEDFQELERLAQGMDVQWM 848
QNI+KLVLYTDSMFTINGIT+WV GWKKNGW+TS KEV+NKEDF LERL QGMD+QWM
Sbjct: 200 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 259
Query: 849 HVPGHAGFIGNEEADRLAREGAKQ 920
HVPGH+GFIGNEEADRLAREGAKQ
Sbjct: 260 HVPGHSGFIGNEEADRLAREGAKQ 283
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,598,644
Number of extensions: 1422118
Number of successful extensions: 6600
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6572
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 386
Effective length of database: 14,770,016
Effective search space: 5701226176
Effective search space used: 5701226176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008805
(1479 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 533 e-149
>Sscrofa_Chr03
|| Length = 144787322
Score = 533 bits (269), Expect = e-149
Identities = 269/269 (100%)
Strand = Plus / Plus
Query: 845 gatgcatgttcctggccatgcgggatttataggcaatgaagaagccgaccgattagcaag 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140442051 gatgcatgttcctggccatgcgggatttataggcaatgaagaagccgaccgattagcaag 140442110
Query: 905 agaaggtgccaagcagcctgcatgctgaacgaatgcagcatttcattcttggaagaactt 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140442111 agaaggtgccaagcagcctgcatgctgaacgaatgcagcatttcattcttggaagaactt 140442170
Query: 965 gagcgtggccgttctgtcacctttgcttactggagtggacactaaaacgacggggtggac 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140442171 gagcgtggccgttctgtcacctttgcttactggagtggacactaaaacgacggggtggac 140442230
Query: 1025 agtgctgtcgacggcagacacagctttcagaccggatcaggaaggcgggggcggggtggg 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140442231 agtgctgtcgacggcagacacagctttcagaccggatcaggaaggcgggggcggggtggg 140442290
Query: 1085 agcgtgcgataaaggcagctgtggaatac 1113
|||||||||||||||||||||||||||||
Sbjct: 140442291 agcgtgcgataaaggcagctgtggaatac 140442319
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 5 tgttttgggtgatggcggcgcgcggcctggagcagagatgcccgttggtggccgggggtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140434532 tgttttgggtgatggcggcgcgcggcctggagcagagatgcccgttggtggccgggggtg 140434591
Query: 65 agcgatgaccaggctcctggacgtggtgcacagagtggctgtgtccgtcgtgcgctgcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140434592 agcgatgaccaggctcctggacgtggtgcacagagtggctgtgtccgtcgtgcgctgcag 140434651
Query: 125 tggccgtggctgccgcgcgctcgccatgttctatgccgtgaggaggggccgcaaggccgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140434652 tggccgtggctgccgcgcgctcgccatgttctatgccgtgaggaggggccgcaaggccgg 140434711
Query: 185 ggtcttcctgacctgg 200
||||||||||||||||
Sbjct: 140434712 ggtcttcctgacctgg 140434727
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 314 agggcaggggaacggacaggtacaggaatcccacgtgaaggcgaacaagcgcccgcgtga 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140437841 agggcaggggaacggacaggtacaggaatcccacgtgaaggcgaacaagcgcccgcgtga 140437900
Query: 374 gccccaggacgaagacgaggtggagaaggccgagctgccagccaagcacgtgaaacagag 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140437901 gccccaggacgaagacgaggtggagaaggccgagctgccagccaagcacgtgaaacagag 140437960
Query: 434 cgcagggcccccgccgcccgtcggcaaggacacgttttcttacatggg 481
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140437961 cgcagggcccccgccgcccgtcggcaaggacacgttttcttacatggg 140438008
Score = 264 bits (133), Expect = 1e-67
Identities = 152/159 (95%)
Strand = Plus / Plus
Query: 1300 caggtgtgagaaattgggcgtcctttgcgatgtgagaatggtcggaggtttgagtactcg 1359
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 140442501 caggtgtgagaaattgagcgtcctttgtgatgtgagaatggtcggaggtttgagtactcg 140442560
Query: 1360 gcttcactatgcttgatgctgttctcattagttttattgcaggctggacaaagatgctag 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140442561 gcttcactatgcttgatgctgttctcattagttttattgcaggctggacaaagatgctag 140442620
Query: 1420 gaccttgctttnaataagatgaataaaccttggttnaaa 1458
||||||||||| | | |||||||||||||||||| |||
Sbjct: 140442621 gaccttgctttaataaggatgaataaaccttggttaaaa 140442659
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 720 ggcatcactagctgggttccgggctggaagaagaacggctggcggacaagcacccacaag 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140440634 ggcatcactagctgggttccgggctggaagaagaacggctggcggacaagcacccacaag 140440693
Query: 780 gaggtggtcaacaaagaggacttccaggagctggagcgcctcgcccagggaatggacgtt 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140440694 gaggtggtcaacaaagaggacttccaggagctggagcgcctcgcccagggaatggacgtt 140440753
Query: 840 cagtgg 845
||||||
Sbjct: 140440754 cagtgg 140440759
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 199 ggaatgaatgcagagcacaggtggatcggtttcctgcagccagatttaagaagtttgcca 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140435679 ggaatgaatgcagagcacaggtggatcggtttcctgcagccagatttaagaagtttgcca 140435738
Query: 259 cagaggaggaagcctgggctttcgtcagaaactctgcaagccatgagggttcagaagg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140435739 cagaggaggaagcctgggctttcgtcagaaactctgcaagccatgagggttcagaagg 140435796
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 480 ggggaatttgtcgttgtctacactgacggctgctgctccagtaatgggcggaggcgggct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140438491 ggggaatttgtcgttgtctacactgacggctgctgctccagtaatgggcggaggcgggct 140438550
Query: 540 cgagcaggaattggtgtttactgggggccaggccatccttt 580
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 140438551 cgagcaggaattggtgtttactgggggccaggccatccttt 140438591
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 636 gcggcctgcaaagccctcgagctggcgaaggctcagaacatcagcaagctggttctctac 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140440087 gcggcctgcaaagccctcgagctggcgaaggctcagaacatcagcaagctggttctctac 140440146
Query: 696 acggacagcatgttcaccatcaatgg 721
||||||||||||||||||||||||||
Sbjct: 140440147 acggacagcatgttcaccatcaatgg 140440172
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 581 aaatgtaggaattagacttcctggacggcaaacaaaccaaagagcagaaattcatg 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140439679 aaatgtaggaattagacttcctggacggcaaacaaaccaaagagcagaaattcatg 140439734
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,486,535
Number of extensions: 280
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 9
Length of query: 1479
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1458
Effective length of database: 2,808,413,156
Effective search space: 4094666381448
Effective search space used: 4094666381448
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)