Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008808
(1030 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039411.1| mitotic spindle assembly checkpoint protein ... 283 2e-76
>ref|NP_001039411.1| mitotic spindle assembly checkpoint protein MAD2B [Bos taurus].
Length = 211
Score = 283 bits (723), Expect = 2e-76
Identities = 140/151 (92%), Positives = 140/151 (92%)
Frame = +2
Query: 482 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPXXXXXXXXXXXHVE 661
NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPP HVE
Sbjct: 61 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLPISSDSLLSHVE 120
Query: 662 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 841
QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
Sbjct: 121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 180
Query: 842 MHDPRLIPLKTMTSDILKMQLYVEERAHKSS 934
MHDPRLIPLKTMTSDILKMQLYVEERAHKSS
Sbjct: 181 MHDPRLIPLKTMTSDILKMQLYVEERAHKSS 211
Score = 108 bits (269), Expect = 1e-23
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 159 MTTITRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ 317
MTT+TRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ
Sbjct: 1 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ 53
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,523,024
Number of extensions: 1164669
Number of successful extensions: 5710
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5664
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008808
(1030 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544568.2| PREDICTED: similar to Mitotic spindle assembly ... 283 2e-76
>ref|XP_544568.2| PREDICTED: similar to Mitotic spindle assembly checkpoint protein
MAD2B (MAD2-like 2) [Canis familiaris].
Length = 196
Score = 283 bits (723), Expect = 2e-76
Identities = 140/151 (92%), Positives = 140/151 (92%)
Frame = +2
Query: 482 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPXXXXXXXXXXXHVE 661
NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPP HVE
Sbjct: 46 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE 105
Query: 662 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 841
QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
Sbjct: 106 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 165
Query: 842 MHDPRLIPLKTMTSDILKMQLYVEERAHKSS 934
MHDPRLIPLKTMTSDILKMQLYVEERAHKSS
Sbjct: 166 MHDPRLIPLKTMTSDILKMQLYVEERAHKSS 196
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,084,823
Number of extensions: 1159123
Number of successful extensions: 6257
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6193
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008808
(1030 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127615.1| PREDICTED: mitotic spindle assembly checkpoi... 283 1e-76
>ref|XP_003127615.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2B-like
[Sus scrofa].
Length = 211
Score = 283 bits (723), Expect = 1e-76
Identities = 140/151 (92%), Positives = 140/151 (92%)
Frame = +2
Query: 482 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPXXXXXXXXXXXHVE 661
NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPP HVE
Sbjct: 61 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE 120
Query: 662 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 841
QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
Sbjct: 121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 180
Query: 842 MHDPRLIPLKTMTSDILKMQLYVEERAHKSS 934
MHDPRLIPLKTMTSDILKMQLYVEERAHKSS
Sbjct: 181 MHDPRLIPLKTMTSDILKMQLYVEERAHKSS 211
Score = 108 bits (271), Expect = 4e-24
Identities = 53/53 (100%), Positives = 53/53 (100%)
Frame = +3
Query: 159 MTTITRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ 317
MTTITRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ
Sbjct: 1 MTTITRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ 53
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,011,958
Number of extensions: 823483
Number of successful extensions: 3994
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3956
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008808
(1030 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082261.2| mitotic spindle assembly checkpoint protein MAD... 281 4e-76
>ref|NP_082261.2| mitotic spindle assembly checkpoint protein MAD2B [Mus musculus].
Length = 211
Score = 281 bits (720), Expect = 4e-76
Identities = 139/151 (92%), Positives = 140/151 (92%)
Frame = +2
Query: 482 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPXXXXXXXXXXXHVE 661
NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPP HVE
Sbjct: 61 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLLSHVE 120
Query: 662 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 841
QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
Sbjct: 121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 180
Query: 842 MHDPRLIPLKTMTSDILKMQLYVEERAHKSS 934
MHDPRLIPLKTMTSDILKMQLYVEERAHK+S
Sbjct: 181 MHDPRLIPLKTMTSDILKMQLYVEERAHKNS 211
Score = 104 bits (259), Expect = 1e-22
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = +3
Query: 159 MTTITRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ 317
MTT+TRQDLNFGQVVADVL EFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ
Sbjct: 1 MTTLTRQDLNFGQVVADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ 53
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,643,961
Number of extensions: 920878
Number of successful extensions: 3994
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3956
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008808
(1030 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001120797.1| mitotic spindle assembly checkpoint protein ... 281 7e-76
Alignment gi|NP_006332.3| mitotic spindle assembly checkpoint protein MAD... 281 7e-76
>ref|NP_001120797.1| mitotic spindle assembly checkpoint protein MAD2B [Homo sapiens].
Length = 211
Score = 281 bits (719), Expect = 7e-76
Identities = 139/151 (92%), Positives = 139/151 (92%)
Frame = +2
Query: 482 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPXXXXXXXXXXXHVE 661
NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPP HVE
Sbjct: 61 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE 120
Query: 662 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 841
QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
Sbjct: 121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 180
Query: 842 MHDPRLIPLKTMTSDILKMQLYVEERAHKSS 934
MHDPRLIPLKTMTSDILKMQLYVEERAHK S
Sbjct: 181 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS 211
Score = 108 bits (269), Expect = 1e-23
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 159 MTTITRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ 317
MTT+TRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ
Sbjct: 1 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ 53
>ref|NP_006332.3| mitotic spindle assembly checkpoint protein MAD2B [Homo sapiens].
Length = 211
Score = 281 bits (719), Expect = 7e-76
Identities = 139/151 (92%), Positives = 139/151 (92%)
Frame = +2
Query: 482 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPXXXXXXXXXXXHVE 661
NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPP HVE
Sbjct: 61 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE 120
Query: 662 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 841
QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
Sbjct: 121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 180
Query: 842 MHDPRLIPLKTMTSDILKMQLYVEERAHKSS 934
MHDPRLIPLKTMTSDILKMQLYVEERAHK S
Sbjct: 181 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS 211
Score = 108 bits (269), Expect = 1e-23
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 159 MTTITRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ 317
MTT+TRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ
Sbjct: 1 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQ 53
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,998,096
Number of extensions: 1113864
Number of successful extensions: 5426
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5390
Number of HSP's successfully gapped: 4
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008808
(1030 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 260 1e-66
gb|GL894325.2| Sus scrofa unplaced genomic scaffold ChrUScaf2209 244 8e-62
>Sscrofa_Chr06
|| Length = 157765593
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 1 cggagcgccgcggacgtcaccgagcggcgccctggcggcgggttgagcgggaggcgcgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65698167 cggagcgccgcggacgtcaccgagcggcgccctggcggcgggttgagcgggaggcgcgag 65698108
Query: 61 tgaaccggtcggcggttaccctcccgggggcctggccccgacccgggaatcgaggccgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65698107 tgaaccggtcggcggttaccctcccgggggcctggccccgacccgggaatcgaggccgga 65698048
Query: 121 gccggtaccgg 131
|||||||||||
Sbjct: 65698047 gccggtaccgg 65698037
Score = 244 bits (123), Expect = 8e-62
Identities = 137/139 (98%), Gaps = 2/139 (1%)
Strand = Plus / Minus
Query: 894 agatgcagctgtacgtggaagagcgagctcataaaagcagctgagggtgtgcctgcccca 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65692980 agatgcagctgtacgtggaagagcgagctcataaaagcagctgagggtgtgcctgcccca 65692921
Query: 954 ccccc-accccgtggatgccgcagctgtcggacttcggggggcccagcctagggcagtgc 1012
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65692920 ccccccaccccgtggatgccgcagctgtcggacttcggggggcccagcctagggcagtgc 65692861
Query: 1013 tgcaggg-caccctgactc 1030
||||||| |||||||||||
Sbjct: 65692860 tgcagggccaccctgactc 65692842
Score = 232 bits (117), Expect = 3e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 197 agtggtggccgacgtgctttgcgagttcctggaggtggccgtgcacctgatcctctacgt 256
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65697448 agtggtggctgacgtgctttgcgagttcctggaggtggccgtgcacctgatcctctacgt 65697389
Query: 257 gcgtgaggtctacccggtgggcatcttccagaaacgtaagaagtacaacgtgcccgtcca 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65697388 gcgtgaggtctacccggtgggcatcttccagaaacgtaagaagtacaacgtgcccgtcca 65697329
Query: 317 g 317
|
Sbjct: 65697328 g 65697328
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 313 tccagtctctagaagtgcctgccccttagcagcactcagtaaatattaggacaaatgacc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65696895 tccagtctctagaagtgcctgccccttagcagcactcagtaaatattaggacaaatgacc 65696836
Query: 373 gaatactggaaggtggtggaagcttaaaggatatacaaggaataggaaaaaaa 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65696835 gaatactggaaggtggtggaagcttaaaggatatacaaggaataggaaaaaaa 65696783
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 531 agaatgatgtggagaaagtggtggtggtgattttggacaaagagcaccgcccagtggaga 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65695216 agaatgatgtggagaaagtggtggtggtgattttggacaaagagcaccgcccagtggaga 65695157
Query: 591 aattcgtctttgaaatcacccagcctccgctgctgtccatcag 633
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65695156 aattcgtctttgaaatcacccagcctccgctgctgtccatcag 65695114
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 801 aggacttcccctggatcctggcagacgagcaggatgtccacatgcacgacccccgactga 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65693306 aggacttcccctggatcctggcagacgagcaggatgtccacatgcacgacccccgactga 65693247
Query: 861 tacccctaaaaaccatgacgtcagacatcttaaag 895
|||||||||||||||||||||||||||||||||||
Sbjct: 65693246 tacccctaaaaaccatgacgtcagacatcttaaag 65693212
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Minus
Query: 631 cagctccgactccctgctgtctcacgtggagcagctgctccgagccttcatcctgaagat 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65694294 cagctccgactccctgctgtctcacgtggagcagctgctccgagccttcatcctgaagat 65694235
Query: 691 cagtgtgtgtgatgctgtcctggaccacaaccccccagg 729
||||||||| |||||||||||||||||||||||||||||
Sbjct: 65694234 cagtgtgtgcgatgctgtcctggaccacaaccccccagg 65694196
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 727 aggctgtaccttcacagtcttagtgcacacgagagaggctgccactcgcaacatggagaa 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65693872 aggctgtaccttcacagtcttagtgcacacgagagaggctgccactcgcaacatggagaa 65693813
Query: 787 gatccaggtcatcaagg 803
|||||||||||||||||
Sbjct: 65693812 gatccaggtcatcaagg 65693796
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 147 gtgtccggaaggatgaccacgatcacgagacaggacctcaactttggtcaag 198
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65697595 gtgtccggaaggatgaccacgatcacgagacaggacctcaactttggtcaag 65697544
Score = 101 bits (51), Expect = 7e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 482 aaccagtatatccaggacacactgcactgcgtcaagccgctcctggagaag 532
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65696047 aaccagtatatccaggacacactgcactgcgtcaagccgctcctggagaag 65695997
>gb|GL894325.2| Sus scrofa unplaced genomic scaffold ChrUScaf2209
Length = 42327
Score = 244 bits (123), Expect = 8e-62
Identities = 137/139 (98%), Gaps = 2/139 (1%)
Strand = Plus / Minus
Query: 894 agatgcagctgtacgtggaagagcgagctcataaaagcagctgagggtgtgcctgcccca 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15607 agatgcagctgtacgtggaagagcgagctcataaaagcagctgagggtgtgcctgcccca 15548
Query: 954 ccccc-accccgtggatgccgcagctgtcggacttcggggggcccagcctagggcagtgc 1012
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15547 ccccccaccccgtggatgccgcagctgtcggacttcggggggcccagcctagggcagtgc 15488
Query: 1013 tgcaggg-caccctgactc 1030
||||||| |||||||||||
Sbjct: 15487 tgcagggccaccctgactc 15469
Score = 232 bits (117), Expect = 3e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 197 agtggtggccgacgtgctttgcgagttcctggaggtggccgtgcacctgatcctctacgt 256
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20418 agtggtggctgacgtgctttgcgagttcctggaggtggccgtgcacctgatcctctacgt 20359
Query: 257 gcgtgaggtctacccggtgggcatcttccagaaacgtaagaagtacaacgtgcccgtcca 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20358 gcgtgaggtctacccggtgggcatcttccagaaacgtaagaagtacaacgtgcccgtcca 20299
Query: 317 g 317
|
Sbjct: 20298 g 20298
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 313 tccagtctctagaagtgcctgccccttagcagcactcagtaaatattaggacaaatgacc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19781 tccagtctctagaagtgcctgccccttagcagcactcagtaaatattaggacaaatgacc 19722
Query: 373 gaatactggaaggtggtggaagcttaaaggatatacaaggaataggaaaaaaa 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19721 gaatactggaaggtggtggaagcttaaaggatatacaaggaataggaaaaaaa 19669
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 531 agaatgatgtggagaaagtggtggtggtgattttggacaaagagcaccgcccagtggaga 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18149 agaatgatgtggagaaagtggtggtggtgattttggacaaagagcaccgcccagtggaga 18090
Query: 591 aattcgtctttgaaatcacccagcctccgctgctgtccatcag 633
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18089 aattcgtctttgaaatcacccagcctccgctgctgtccatcag 18047
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 801 aggacttcccctggatcctggcagacgagcaggatgtccacatgcacgacccccgactga 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15933 aggacttcccctggatcctggcagacgagcaggatgtccacatgcacgacccccgactga 15874
Query: 861 tacccctaaaaaccatgacgtcagacatcttaaag 895
|||||||||||||||||||||||||||||||||||
Sbjct: 15873 tacccctaaaaaccatgacgtcagacatcttaaag 15839
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Minus
Query: 631 cagctccgactccctgctgtctcacgtggagcagctgctccgagccttcatcctgaagat 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17150 cagctccgactccctgctgtctcacgtggagcagctgctccgagccttcatcctgaagat 17091
Query: 691 cagtgtgtgtgatgctgtcctggaccacaaccccccagg 729
||||||||| |||||||||||||||||||||||||||||
Sbjct: 17090 cagtgtgtgcgatgctgtcctggaccacaaccccccagg 17052
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 727 aggctgtaccttcacagtcttagtgcacacgagagaggctgccactcgcaacatggagaa 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16579 aggctgtaccttcacagtcttagtgcacacgagagaggctgccactcgcaacatggagaa 16520
Query: 787 gatccaggtcatcaagg 803
|||||||||||||||||
Sbjct: 16519 gatccaggtcatcaagg 16503
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 79 ccctcccgggggcctggccccgacccgggaatcgaggccggagccggtaccgg 131
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21059 ccctcccgggggcctggccccgacccgggaatcgaggccggagccggtaccgg 21007
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 147 gtgtccggaaggatgaccacgatcacgagacaggacctcaactttggtcaag 198
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20565 gtgtccggaaggatgaccacgatcacgagacaggacctcaactttggtcaag 20514
Score = 101 bits (51), Expect = 7e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 482 aaccagtatatccaggacacactgcactgcgtcaagccgctcctggagaag 532
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18819 aaccagtatatccaggacacactgcactgcgtcaagccgctcctggagaag 18769
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,932,936
Number of extensions: 455
Number of successful extensions: 455
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 20
Length of query: 1030
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1009
Effective length of database: 2,808,413,156
Effective search space: 2833688874404
Effective search space used: 2833688874404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)