Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008809
(1526 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777263.1| probable phospholipid-transporting ATPase IA [B... 558 e-159
Alignment gi|NP_001157274.2| probable phospholipid-transporting ATPase IB... 370 e-102
Alignment gi|XP_002691905.1| PREDICTED: ATPase, aminophospholipid transpo... 293 2e-79
Alignment gi|XP_001788203.1| PREDICTED: ATPase, aminophospholipid transpo... 293 2e-79
Alignment gi|XP_874503.3| PREDICTED: ATPase, aminophospholipid transporte... 212 8e-55
Alignment gi|XP_002691019.1| PREDICTED: ATPase, class I, type 8B, member ... 115 1e-25
Alignment gi|XP_001788397.1| PREDICTED: ATPase class I type 8B member 4, ... 115 1e-25
Alignment gi|XP_002692059.1| PREDICTED: ATPase, class VI, type 11A isofor... 108 1e-23
Alignment gi|XP_001789213.1| PREDICTED: ATPase, Class VI, type 11A-like, ... 108 1e-23
Alignment gi|XP_611441.4| PREDICTED: ATPase, class VI, type 11A isoform a... 108 1e-23
>ref|NP_777263.1| probable phospholipid-transporting ATPase IA [Bos taurus].
Length = 1149
Score = 558 bits (1437), Expect = e-159
Identities = 270/278 (97%), Positives = 274/278 (98%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
LFERWCIGLYNVMFTAMPPLTLGIFERSCRKE MLKYPELYKTSQNALDFNTKVFWVHCL
Sbjct: 872 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKEYMLKYPELYKTSQNALDFNTKVFWVHCL 931
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
NGLFHSVILFWFPLKALQYGTVF NG+TSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF
Sbjct: 932 NGLFHSVILFWFPLKALQYGTVFENGRTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 991
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
SHIAIWGSIALWVVFFGIYS LWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD
Sbjct: 992 SHIAIWGSIALWVVFFGIYSSLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 1051
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLNLYHSES 742
VVYKV+KRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNH+NLY SES
Sbjct: 1052 VVYKVIKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHVNLYRSES 1111
Query: 743 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPEEW 856
LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRP+EW
Sbjct: 1112 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPDEW 1149
>ref|NP_001157274.2| probable phospholipid-transporting ATPase IB [Bos taurus].
Length = 1176
Score = 370 bits (950), Expect = e-102
Identities = 168/278 (60%), Positives = 218/278 (78%), Gaps = 4/278 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
LFERWCIGLYNV+FTA+PP TLGIFERSC +E+ML++P+LYK +QNA FNTKVFW HC+
Sbjct: 895 LFERWCIGLYNVIFTALPPFTLGIFERSCSQESMLRFPQLYKITQNAEGFNTKVFWGHCI 954
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
N L HS+ILFWFP+KAL++ TV NG +DYL +GN VYT+VV+TVCLKAGLET+ WT F
Sbjct: 955 NALVHSLILFWFPMKALEHDTVLANGHATDYLFVGNIVYTYVVVTVCLKAGLETTAWTKF 1014
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
SH+A+WGS+ +W+VFFGIYS +WP +P+APDM G+A M+ SS FW+GL +P A L+ D
Sbjct: 1015 SHLAVWGSMLIWLVFFGIYSTIWPTIPIAPDMKGQATMVLSSAHFWLGLFLVPTACLIED 1074
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVL----GKSLTERAQLLKNVFKKNHLNLY 730
V ++ K T KTL++EVQELE KS+ G +L GK + ER +LLK + +K L+
Sbjct: 1075 VAWRAAKHTCKKTLLEEVQELEMKSRVMGRAMLRDSNGKRMNERDRLLKRLSRKTPPTLF 1134
Query: 731 HSESLQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQR 844
SLQQ++ HGYAFSQ+E+G V+Q E++RAYDTTKQ+
Sbjct: 1135 RGSSLQQSMPHGYAFSQEEHGAVTQEEIVRAYDTTKQK 1172
>ref|XP_002691905.1| PREDICTED: ATPase, aminophospholipid transporter-like, Class I, type
8A, member 2-like [Bos taurus].
Length = 1225
Score = 293 bits (751), Expect = 2e-79
Identities = 132/282 (46%), Positives = 191/282 (67%), Gaps = 5/282 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
+FERWCI LYNV+FT++PP TLGIFER C +E++L+YP+LY+ SQ FN KV W+ C+
Sbjct: 940 IFERWCISLYNVIFTSLPPFTLGIFERCCSQESLLRYPQLYRISQTGDIFNIKVLWIQCI 999
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
N + HS ILFW P K L++ V +G T+DYL LGNF+YT+VV+TVCLKAGLET W F
Sbjct: 1000 NAIVHSFILFWLPAKMLEHDMVLQSGYTTDYLFLGNFIYTYVVVTVCLKAGLETMSWNKF 1059
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
+H AIWGSI +W+ FF +YS LWP VP+AP+M+G+ +M FW+G +P+ L+ +
Sbjct: 1060 THFAIWGSIMIWLGFFAVYSSLWPTVPVAPEMTGQGSMALVCPHFWLGFFIVPIVCLIQN 1119
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKS-----LTERAQLLKNVFKKNHLNL 727
V +K ++ T +TL++EV+E+E+ G VL + E L ++ + +
Sbjct: 1120 VAWKSIRNTCHRTLLEEVREMESS----GVQVLRRDSVQSFKVEEVNLQRSSSPRPCQVI 1175
Query: 728 YHSESLQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPEE 853
+ + S+ HGYAFSQ E ++SQ E++R+YDTTK +P++
Sbjct: 1176 FRNNSVDLGAPHGYAFSQVERAVISQEELVRSYDTTKNKPQK 1217
>ref|XP_001788203.1| PREDICTED: ATPase, aminophospholipid transporter-like, Class I, type
8A, member 2 [Bos taurus].
Length = 1230
Score = 293 bits (751), Expect = 2e-79
Identities = 132/282 (46%), Positives = 191/282 (67%), Gaps = 5/282 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
+FERWCI LYNV+FT++PP TLGIFER C +E++L+YP+LY+ SQ FN KV W+ C+
Sbjct: 945 IFERWCISLYNVIFTSLPPFTLGIFERCCSQESLLRYPQLYRISQTGDIFNIKVLWIQCI 1004
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
N + HS ILFW P K L++ V +G T+DYL LGNF+YT+VV+TVCLKAGLET W F
Sbjct: 1005 NAIVHSFILFWLPAKMLEHDMVLQSGYTTDYLFLGNFIYTYVVVTVCLKAGLETMSWNKF 1064
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
+H AIWGSI +W+ FF +YS LWP VP+AP+M+G+ +M FW+G +P+ L+ +
Sbjct: 1065 THFAIWGSIMIWLGFFAVYSSLWPTVPVAPEMTGQGSMALVCPHFWLGFFIVPIVCLIQN 1124
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKS-----LTERAQLLKNVFKKNHLNL 727
V +K ++ T +TL++EV+E+E+ G VL + E L ++ + +
Sbjct: 1125 VAWKSIRNTCHRTLLEEVREMESS----GVQVLRRDSVQSFKVEEVNLQRSSSPRPCQVI 1180
Query: 728 YHSESLQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPEE 853
+ + S+ HGYAFSQ E ++SQ E++R+YDTTK +P++
Sbjct: 1181 FRNNSVDLGAPHGYAFSQVERAVISQEELVRSYDTTKNKPQK 1222
>ref|XP_874503.3| PREDICTED: ATPase, aminophospholipid transporter-like, class I,
type 8A, member 2-like [Bos taurus].
Length = 183
Score = 212 bits (539), Expect = 8e-55
Identities = 98/178 (55%), Positives = 133/178 (74%), Gaps = 4/178 (2%)
Frame = +2
Query: 323 FVVITVCLKAGLETSYWTWFSHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLF 502
+VV+TVCLKAGLET+ WT FSH+A+WGS+ +W+VFFGIYS +WP +P+APDM G+A M+
Sbjct: 2 YVVVTVCLKAGLETTAWTKFSHLAVWGSMLIWLVFFGIYSTIWPTIPIAPDMKGQATMVL 61
Query: 503 SSGVFWMGLLFIPVASLLLDVVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVL----GKS 670
SS FW+GL +P A L+ DV ++ K T KTL++EVQELE KS+ G +L GK
Sbjct: 62 SSAHFWLGLFLVPTACLIEDVAWRAAKHTCKKTLLEEVQELEMKSRVMGRAMLRDSNGKR 121
Query: 671 LTERAQLLKNVFKKNHLNLYHSESLQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQR 844
+ ER +LLK + +K L+ SLQQ++ HGYAFSQ+E+G V+Q E++RAYDTTKQ+
Sbjct: 122 MNERDRLLKRLSRKTPPTLFRGSSLQQSMPHGYAFSQEEHGAVTQEEIVRAYDTTKQK 179
>ref|XP_002691019.1| PREDICTED: ATPase, class I, type 8B, member 4 [Bos taurus].
Length = 1308
Score = 115 bits (288), Expect = 1e-25
Identities = 67/238 (28%), Positives = 124/238 (52%), Gaps = 2/238 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
++++W I L+N+++T++P L +GIF++ +N + YP+LY+ Q L FN F++
Sbjct: 1017 VYDQWFITLFNIVYTSLPVLAMGIFDQDVSDQNSMDYPQLYRPGQLNLLFNKHEFFICMA 1076
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
+G++ S+ LF+ P A T+DY + T +VI V ++ L+TSYWT
Sbjct: 1077 HGIYTSLALFFIPYGAFHNMAGEDGQHTADYQSFAVTMATSLVIVVSVQIALDTSYWTVI 1136
Query: 383 SHIAIWGSIALWV-VFFGIYS-CLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H+ IWGSIA + + F ++S ++ P G A + W+ +L VAS++
Sbjct: 1137 NHVFIWGSIATYFSILFTMHSNGIFGLFPNQFPFVGNARHSLTQKCTWLVILLTTVASVM 1196
Query: 557 LDVVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLNLY 730
V ++ +K F TL D++++ + + + K T R+ ++ + H Y
Sbjct: 1197 PVVAFRFLKVDLFPTLSDQIRQWQKAQKKARPLRSRKPQTRRSSSRRSGYAFAHQEGY 1254
>ref|XP_001788397.1| PREDICTED: ATPase class I type 8B member 4, partial [Bos taurus].
Length = 1043
Score = 115 bits (288), Expect = 1e-25
Identities = 67/238 (28%), Positives = 124/238 (52%), Gaps = 2/238 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
++++W I L+N+++T++P L +GIF++ +N + YP+LY+ Q L FN F++
Sbjct: 752 VYDQWFITLFNIVYTSLPVLAMGIFDQDVSDQNSMDYPQLYRPGQLNLLFNKHEFFICMA 811
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
+G++ S+ LF+ P A T+DY + T +VI V ++ L+TSYWT
Sbjct: 812 HGIYTSLALFFIPYGAFHNMAGEDGQHTADYQSFAVTMATSLVIVVSVQIALDTSYWTVI 871
Query: 383 SHIAIWGSIALWV-VFFGIYS-CLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H+ IWGSIA + + F ++S ++ P G A + W+ +L VAS++
Sbjct: 872 NHVFIWGSIATYFSILFTMHSNGIFGLFPNQFPFVGNARHSLTQKCTWLVILLTTVASVM 931
Query: 557 LDVVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLNLY 730
V ++ +K F TL D++++ + + + K T R+ ++ + H Y
Sbjct: 932 PVVAFRFLKVDLFPTLSDQIRQWQKAQKKARPLRSRKPQTRRSSSRRSGYAFAHQEGY 989
>ref|XP_002692059.1| PREDICTED: ATPase, class VI, type 11A isoform a (predicted)-like [Bos
taurus].
Length = 1440
Score = 108 bits (270), Expect = 1e-23
Identities = 63/202 (31%), Positives = 109/202 (53%), Gaps = 3/202 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKT-SQNAL-DFNTKVFWVH 196
L++ + LYN+ FT++P L + E+ + + + P LY+ ++NAL + ++W
Sbjct: 1217 LYDTAYLTLYNISFTSLPILLYSLMEQHVAMDTLKRDPALYRDIAKNALLRWRAFIYWT- 1275
Query: 197 CLNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWT 376
L GLF++++ F+ + TV NG+ G V+T +V+TV LK L+T YWT
Sbjct: 1276 -LLGLFNALVFFFGAYFMFENTTVTSNGQVFGNWTFGTLVFTVMVLTVTLKLALDTHYWT 1334
Query: 377 WFSHIAIWGSIALWVVFFGIY-SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASL 553
W +H IWGS+ ++VF ++ +WP + M + SSG W+ ++ + SL
Sbjct: 1335 WVNHFVIWGSLLFYIVFSLLWGGVIWPFLSY-QRMYYVFIQMLSSGPAWLAIVLLVTVSL 1393
Query: 554 LLDVVYKVVKRTAFKTLVDEVQ 619
L DV+ KV+ R + + + VQ
Sbjct: 1394 LPDVLKKVLCRQLWPSATERVQ 1415
>ref|XP_001789213.1| PREDICTED: ATPase, Class VI, type 11A-like, partial [Bos taurus].
Length = 455
Score = 108 bits (270), Expect = 1e-23
Identities = 63/202 (31%), Positives = 109/202 (53%), Gaps = 3/202 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKT-SQNAL-DFNTKVFWVH 196
L++ + LYN+ FT++P L + E+ + + + P LY+ ++NAL + ++W
Sbjct: 232 LYDTAYLTLYNISFTSLPILLYSLMEQHVAMDTLKRDPALYRDIAKNALLRWRAFIYWT- 290
Query: 197 CLNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWT 376
L GLF++++ F+ + TV NG+ G V+T +V+TV LK L+T YWT
Sbjct: 291 -LLGLFNALVFFFGAYFMFENTTVTSNGQVFGNWTFGTLVFTVMVLTVTLKLALDTHYWT 349
Query: 377 WFSHIAIWGSIALWVVFFGIY-SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASL 553
W +H IWGS+ ++VF ++ +WP + M + SSG W+ ++ + SL
Sbjct: 350 WVNHFVIWGSLLFYIVFSLLWGGVIWPFLSY-QRMYYVFIQMLSSGPAWLAIVLLVTVSL 408
Query: 554 LLDVVYKVVKRTAFKTLVDEVQ 619
L DV+ KV+ R + + + VQ
Sbjct: 409 LPDVLKKVLCRQLWPSATERVQ 430
>ref|XP_611441.4| PREDICTED: ATPase, class VI, type 11A isoform a (predicted)-like [Bos
taurus].
Length = 1145
Score = 108 bits (270), Expect = 1e-23
Identities = 63/202 (31%), Positives = 109/202 (53%), Gaps = 3/202 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKT-SQNAL-DFNTKVFWVH 196
L++ + LYN+ FT++P L + E+ + + + P LY+ ++NAL + ++W
Sbjct: 922 LYDTAYLTLYNISFTSLPILLYSLMEQHVAMDTLKRDPALYRDIAKNALLRWRAFIYWT- 980
Query: 197 CLNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWT 376
L GLF++++ F+ + TV NG+ G V+T +V+TV LK L+T YWT
Sbjct: 981 -LLGLFNALVFFFGAYFMFENTTVTSNGQVFGNWTFGTLVFTVMVLTVTLKLALDTHYWT 1039
Query: 377 WFSHIAIWGSIALWVVFFGIY-SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASL 553
W +H IWGS+ ++VF ++ +WP + M + SSG W+ ++ + SL
Sbjct: 1040 WVNHFVIWGSLLFYIVFSLLWGGVIWPFLSY-QRMYYVFIQMLSSGPAWLAIVLLVTVSL 1098
Query: 554 LLDVVYKVVKRTAFKTLVDEVQ 619
L DV+ KV+ R + + + VQ
Sbjct: 1099 LPDVLKKVLCRQLWPSATERVQ 1120
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,184,955
Number of extensions: 1394776
Number of successful extensions: 3934
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 3915
Number of HSP's successfully gapped: 24
Length of query: 508
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 401
Effective length of database: 14,140,958
Effective search space: 5670524158
Effective search space used: 5670524158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008809
(1526 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858569.1| PREDICTED: similar to ATPase, aminophospholipid... 563 e-160
Alignment gi|XP_849357.1| PREDICTED: similar to ATPase, aminophospholipid... 563 e-160
Alignment gi|XP_543162.2| PREDICTED: similar to Potential phospholipid-tr... 283 4e-76
Alignment gi|XP_544674.2| PREDICTED: similar to ATPase class I type 8B me... 116 5e-26
Alignment gi|XP_547569.2| PREDICTED: similar to Potential phospholipid-tr... 105 2e-22
Alignment gi|XP_533394.2| PREDICTED: similar to ATPase, Class I, type 8B,... 104 2e-22
Alignment gi|XP_534190.2| PREDICTED: similar to ATPase, Class VI, type 11... 103 4e-22
Alignment gi|XP_535816.2| PREDICTED: similar to Potential phospholipid-tr... 102 1e-21
Alignment gi|XP_854716.1| PREDICTED: similar to Potential phospholipid-tr... 100 4e-21
Alignment gi|XP_545808.2| PREDICTED: similar to Potential phospholipid-tr... 95 2e-19
>ref|XP_858569.1| PREDICTED: similar to ATPase, aminophospholipid transporter (APLT),
class I, type 8A, member 1 isoform 2 [Canis familiaris].
Length = 1143
Score = 563 bits (1451), Expect = e-160
Identities = 272/278 (97%), Positives = 275/278 (98%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL
Sbjct: 866 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 925
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
NGLFHSVILFWFPLKALQYG VFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF
Sbjct: 926 NGLFHSVILFWFPLKALQYGNVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 985
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
SHIAIWGSIALWVVFFGIYS LWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD
Sbjct: 986 SHIAIWGSIALWVVFFGIYSSLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 1045
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLNLYHSES 742
VVYKV+KRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNH+NLY SES
Sbjct: 1046 VVYKVIKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHVNLYRSES 1105
Query: 743 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPEEW 856
LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRP+EW
Sbjct: 1106 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPDEW 1143
>ref|XP_849357.1| PREDICTED: similar to ATPase, aminophospholipid transporter (APLT),
class I, type 8A, member 1 isoform 1 [Canis familiaris].
Length = 1158
Score = 563 bits (1451), Expect = e-160
Identities = 272/278 (97%), Positives = 275/278 (98%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL
Sbjct: 881 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 940
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
NGLFHSVILFWFPLKALQYG VFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF
Sbjct: 941 NGLFHSVILFWFPLKALQYGNVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 1000
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
SHIAIWGSIALWVVFFGIYS LWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD
Sbjct: 1001 SHIAIWGSIALWVVFFGIYSSLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 1060
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLNLYHSES 742
VVYKV+KRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNH+NLY SES
Sbjct: 1061 VVYKVIKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHVNLYRSES 1120
Query: 743 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPEEW 856
LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRP+EW
Sbjct: 1121 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPDEW 1158
>ref|XP_543162.2| PREDICTED: similar to Potential phospholipid-transporting ATPase IB
(ATPase class I type 8A member 2) (ML-1) [Canis
familiaris].
Length = 1175
Score = 283 bits (723), Expect = 4e-76
Identities = 130/277 (46%), Positives = 188/277 (67%), Gaps = 3/277 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
+FE WCI LYNV+FT++PP TLGIFE+ C ++++L YP+LY SQ FNTKVFW C+
Sbjct: 888 IFEHWCISLYNVIFTSLPPFTLGIFEQCCSQKSLLTYPQLYTVSQTGKTFNTKVFWFQCI 947
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
N L HS ILFW P+K L++ V G T+DYL LGNF+YT+VV+TVCLKAGL+T WT F
Sbjct: 948 NALVHSFILFWMPMKMLEHDMVLQGGHTTDYLFLGNFIYTYVVVTVCLKAGLDTLSWTKF 1007
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
SH+AIWGSI +W+VFF IYS +WP +P+AP+M+G+ M+ FW+G L +P+ L+L+
Sbjct: 1008 SHLAIWGSIIIWMVFFAIYSFVWPTIPVAPEMTGQVNMILVCPYFWLGFLIVPIVCLILN 1067
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLNLYHSES 742
+++K +K T +TL++EV+E+E+ L ++ + L + + + S
Sbjct: 1068 LIWKSIKNTCNRTLLEEVREMESNRVQE----LNPTMFKMRFLQIGLDMQGKEAPLSASS 1123
Query: 743 LQQNLL---HGYAFSQDENGIVSQSEVIRAYDTTKQR 844
L + +GYAFSQ E +++Q E+I +YDTTK +
Sbjct: 1124 LLDEAVATGNGYAFSQVEQAVITQEELICSYDTTKSQ 1160
>ref|XP_544674.2| PREDICTED: similar to ATPase class I type 8B member 4 [Canis
familiaris].
Length = 1170
Score = 116 bits (291), Expect = 5e-26
Identities = 70/216 (32%), Positives = 123/216 (56%), Gaps = 10/216 (4%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
++++W I L+N+++T++P L +GIF++ ++ + YP+LY+ Q L FN F++
Sbjct: 879 VYDQWFIALFNIVYTSLPVLAMGIFDQDVSDQSSMDYPQLYEPGQLNLLFNKHKFFICMA 938
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGK-TSDYLLLGNFVYTFVVITVCLKAGLETSYWTW 379
+G++ S++LF+ P A Y +G+ +DY + T +VI V ++ L+TSYWT
Sbjct: 939 HGIYTSLVLFFIPYGAF-YNVAGEDGQLIADYQSFAVTMATSLVIVVSVQIALDTSYWTV 997
Query: 380 FSHIAIWGSIALW--VVF-------FGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLL 532
+H+ IWGSIA + V+F FGI+ +P V G A + W+ +L
Sbjct: 998 INHVFIWGSIATYFSVLFTMHSNGIFGIFPNQFPFV-------GNARHSLTQKCIWLVIL 1050
Query: 533 FIPVASLLLDVVYKVVKRTAFKTLVDEVQELEAKSQ 640
VAS++ VV++ +K F TL D++++ + KSQ
Sbjct: 1051 LTTVASVMPVVVFRFLKVDLFPTLSDQIRQRQ-KSQ 1085
>ref|XP_547569.2| PREDICTED: similar to Potential phospholipid-transporting ATPase ID
(ATPase class I type 8B member 2) [Canis familiaris].
Length = 1209
Score = 105 bits (261), Expect = 2e-22
Identities = 56/201 (27%), Positives = 108/201 (53%), Gaps = 2/201 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
+++++ I LYN+++T++P L +G+F++ ++ ++YP+LY+ Q L FN + F++
Sbjct: 919 VYDQYFITLYNIVYTSLPVLAMGVFDQDVPEQRSMEYPKLYEPGQLNLLFNKRQFFICIA 978
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
G++ SV++F+ P T + +DY V T +VI V ++ GL+T YWT
Sbjct: 979 RGIYTSVLMFFIPYGVFAEATRDDGTQLADYQSFAVTVATSLVIVVSVQIGLDTGYWTAI 1038
Query: 383 SHIAIWGSIALW-VVFFGIYS-CLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H IWGS+A++ + F ++S L+ P G A + W+ + V ++
Sbjct: 1039 NHFFIWGSLAVYFAILFAMHSNGLFDMFPNQFRFVGNAQNTLAQPTVWLTITLTTVVCIM 1098
Query: 557 LDVVYKVVKRTAFKTLVDEVQ 619
V ++ +K + L D V+
Sbjct: 1099 PVVAFRFLKLSLKPDLSDTVR 1119
>ref|XP_533394.2| PREDICTED: similar to ATPase, Class I, type 8B, member 1 [Canis
familiaris].
Length = 1267
Score = 104 bits (260), Expect = 2e-22
Identities = 71/244 (29%), Positives = 127/244 (52%), Gaps = 7/244 (2%)
Frame = +2
Query: 26 FERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCLN 205
+E W I LYNV+++++P L +G+ ++ + L++P LY Q L FN K F+V ++
Sbjct: 997 YEDWFITLYNVLYSSLPVLLMGLLDQDVSDKLSLRFPGLYVVGQRDLLFNYKKFFVSLVH 1056
Query: 206 GLFHSVILFWFPLKALQYGTVFGNGKT-SDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
G+ S+ILF+ PL A TV +G+ SDY + + ++ITV + GL+TSYWT+
Sbjct: 1057 GILTSMILFFIPLGA-YLQTVGQDGEAPSDYQSFAVTIASALIITVNFQIGLDTSYWTFV 1115
Query: 383 SHIAIWGSIALWV-VFFGIYSC-LWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+ +I+GSIAL+ + F +S + P A +G A+ W+ ++ LL
Sbjct: 1116 NAFSIFGSIALYFGIMFDFHSAGIHVLFPSAFQFTGTASNALRQPYIWLTIILTVAVCLL 1175
Query: 557 LDVVYKVVKRTAFKTLVDEVQE----LEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLN 724
V + + T + + D++Q+ L+A+ Q V + ++ R ++ + +
Sbjct: 1176 PVVAIRFLSMTIWPSESDKIQKHRKRLKAEEQWKRRQVFRRGVSSRRSAYAFSHQRGYAD 1235
Query: 725 LYHS 736
L S
Sbjct: 1236 LISS 1239
>ref|XP_534190.2| PREDICTED: similar to ATPase, Class VI, type 11A isoform a [Canis
familiaris].
Length = 1186
Score = 103 bits (257), Expect = 4e-22
Identities = 62/201 (30%), Positives = 105/201 (52%), Gaps = 2/201 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKT-SQNALDFNTKVFWVHC 199
L++ + LYN+ FT++P L + E+ + + + P LY+ ++NAL +VF
Sbjct: 963 LYDTAYLTLYNISFTSLPILLYSLMEQHVSIDTLRRDPSLYRDIAKNAL-LRWRVFIYWT 1021
Query: 200 LNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTW 379
G+F +++ F+ + TV NG+ G V+T +V TV LK L+T YWTW
Sbjct: 1022 FLGVFDALVFFFGAYFMFENTTVTSNGQIFGNWTFGTLVFTVMVFTVTLKLALDTHYWTW 1081
Query: 380 FSHIAIWGSIALWVVFFGIY-SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H IWGS+ ++VF ++ +WP + M + SSG W+ ++ + SLL
Sbjct: 1082 INHFVIWGSLLFYIVFSLLWGGIIWPFLNY-QRMYYVFIQMLSSGPAWLVIILLITVSLL 1140
Query: 557 LDVVYKVVKRTAFKTLVDEVQ 619
DV+ KV+ R + + + VQ
Sbjct: 1141 PDVLKKVLCRQLWPSATERVQ 1161
>ref|XP_535816.2| PREDICTED: similar to Potential phospholipid-transporting ATPase IF
(ATPase class I type 11B) (ATPase IR) [Canis familiaris].
Length = 1205
Score = 102 bits (253), Expect = 1e-21
Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 2/201 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
L++ + LYN+ FT++P L + E+ + P LY+ + K F +
Sbjct: 944 LYDSVYLTLYNICFTSLPILIYSLLEQHIDPHVLQSKPTLYRDISKNRQLSIKTFLYWTI 1003
Query: 203 NGLFHSVILFWFPLKALQYG-TVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTW 379
G H+ I F+ + ++ GNG+ G V+T +VITV +K LET +WTW
Sbjct: 1004 LGFSHAFIFFFGSYFLIGKDISLLGNGQMFGNWTFGTLVFTVMVITVTVKMALETHFWTW 1063
Query: 380 FSHIAIWGSIALWVVFFGIY-SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H+ WGSI + +F Y LWP + + +M L SSG W ++ + V L
Sbjct: 1064 INHLVTWGSIVFYFIFSLFYGGILWPFLG-SQNMYFVFIQLLSSGSAWFAIIIMVVTCLF 1122
Query: 557 LDVVYKVVKRTAFKTLVDEVQ 619
LD+V KV R T ++ Q
Sbjct: 1123 LDIVKKVFDRQLHPTNTEKAQ 1143
>ref|XP_854716.1| PREDICTED: similar to Potential phospholipid-transporting ATPase ID
(ATPase class I type 8B member 2) [Canis familiaris].
Length = 1146
Score = 100 bits (249), Expect = 4e-21
Identities = 59/203 (29%), Positives = 105/203 (51%), Gaps = 3/203 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
+++ W I YN+++T +P L L +F++ + L++PELY Q+ L FN K F +
Sbjct: 887 VYDTWFITFYNLVYTCLPVLGLSLFDQDVNETWSLRFPELYDPGQHNLYFNKKEFVKCLM 946
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKT-SDYLLLGNFVYTFVVITVCLKAGLETSYWTW 379
+G++ S +LF+ P+ + Y +V +GK SDY V T ++ V ++ L+T+YWT
Sbjct: 947 HGIYSSFVLFFIPMGTI-YNSVRKDGKEISDYQSFSLIVQTALLWVVTMQIALDTTYWTI 1005
Query: 380 FSHIAIWGSIALW--VVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASL 553
SHI WGS+ + ++FF L P G A + W+ ++ V +
Sbjct: 1006 ISHIFTWGSLGFYFCILFFLYSDGLCLMFPNVFQFLGVARNTLNLPQIWLSIVLSVVLCI 1065
Query: 554 LLDVVYKVVKRTAFKTLVDEVQE 622
L + Y+ +K + VD++ +
Sbjct: 1066 LPVIGYQFLKPLFWPANVDKIMD 1088
>ref|XP_545808.2| PREDICTED: similar to Potential phospholipid-transporting ATPase VA
(P-locus fat-associated ATPase) [Canis familiaris].
Length = 1539
Score = 94.7 bits (234), Expect = 2e-19
Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 2/230 (0%)
Frame = +2
Query: 11 STVGLFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFW 190
S + ++W + +N++F+++P L G+ ++ + +L P+LYK+ QN ++ + FW
Sbjct: 1159 SASAMIDQWYLIFFNLLFSSLPQLVTGVLDKDVPADVLLTAPQLYKSGQNMEEYRPRTFW 1218
Query: 191 VHCLNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSY 370
++ + F S++ F+ P A +D G + + T L G+ET
Sbjct: 1219 LNMADAAFQSLVCFFIPYLAYY-------DSDTDVFTWGTPITAIALFTFLLHLGIETKT 1271
Query: 371 WTWFSHIAIWGSIALWVVFFGIY--SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPV 544
WTW + IA SI L+ IY SC P P + + L VF++ L PV
Sbjct: 1272 WTWLNWIACGFSILLFFTVALIYNASCATCYPPSNPYWTMQT--LLGDPVFYLTCLIAPV 1329
Query: 545 ASLLLDVVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLL 694
A+LL + +K V+ F T + ++L +S P ++ K + LL
Sbjct: 1330 AALLPRLFFKAVQGNLFPTQLQLGRQLAKRS--PKKLIAPKETFAQGHLL 1377
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,468,570
Number of extensions: 1430485
Number of successful extensions: 3695
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3679
Number of HSP's successfully gapped: 14
Length of query: 508
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 401
Effective length of database: 15,307,552
Effective search space: 6138328352
Effective search space used: 6138328352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008809
(1526 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357854.1| PREDICTED: probable phospholipid-transportin... 194 1e-49
Alignment gi|XP_001925554.3| PREDICTED: probable phospholipid-transportin... 114 1e-25
Alignment gi|XP_001925489.2| PREDICTED: probable phospholipid-transportin... 105 7e-23
Alignment gi|XP_003125772.1| PREDICTED: probable phospholipid-transportin... 104 2e-22
Alignment gi|XP_003121763.2| PREDICTED: probable phospholipid-transportin... 102 6e-22
Alignment gi|XP_003132606.2| PREDICTED: LOW QUALITY PROTEIN: probable pho... 94 3e-19
Alignment gi|XP_003135474.1| PREDICTED: probable phospholipid-transportin... 86 4e-17
Alignment gi|XP_003360511.1| PREDICTED: probable phospholipid-transportin... 86 4e-17
Alignment gi|XP_003356959.1| PREDICTED: probable phospholipid-transportin... 74 2e-13
Alignment gi|XP_003123063.2| PREDICTED: probable phospholipid-transportin... 70 2e-12
>ref|XP_003357854.1| PREDICTED: probable phospholipid-transporting ATPase IB-like,
partial [Sus scrofa].
Length = 307
Score = 194 bits (492), Expect = 1e-49
Identities = 85/125 (68%), Positives = 105/125 (84%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
LFERWCIGLYNV+FTA+PP TLGIFERSC +E+ML++P+LYK +QNA FNTKVFW HC+
Sbjct: 132 LFERWCIGLYNVIFTALPPFTLGIFERSCSQESMLRFPQLYKITQNAEGFNTKVFWGHCI 191
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
N L HS+ILFWFP+KA+++ TV NG +DYL +GN VYT+VV+TVCLKAGLET+ WT
Sbjct: 192 NALVHSLILFWFPMKAMEHDTVLANGHATDYLFVGNIVYTYVVVTVCLKAGLETTAWTKA 251
Query: 383 SHIAI 397
+ AI
Sbjct: 252 TRAAI 256
>ref|XP_001925554.3| PREDICTED: probable phospholipid-transporting ATPase IM [Sus scrofa].
Length = 1241
Score = 114 bits (286), Expect = 1e-25
Identities = 66/238 (27%), Positives = 123/238 (51%), Gaps = 2/238 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
++++W I L+N+++T++P L +GIF++ +N + YP+LYK Q L FN F++
Sbjct: 950 VYDQWFIALFNIVYTSLPVLAMGIFDQDVSDQNSMDYPQLYKPGQQNLLFNKCKFFICVA 1009
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
+G++ S+ LF+ P A +DY + T +VI V ++ L+TSYWT
Sbjct: 1010 HGIYTSLALFFIPYGAFYNAAGEDGQYIADYQSFAVTMATSLVIVVSVQIALDTSYWTVI 1069
Query: 383 SHIAIWGSIALWV-VFFGIYS-CLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H+ IWGSIA + + F ++S ++ P G A + W+ +L VAS++
Sbjct: 1070 NHVFIWGSIATYFSILFAMHSNGIFGIFPNQFPFVGIAWHSLNQKCIWLVVLLTTVASVM 1129
Query: 557 LDVVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLNLY 730
V ++ ++ F TL D++++ + + + K T R+ ++ + H Y
Sbjct: 1130 PIVTFRFLRVDLFPTLSDQIRQWQKAQKKARPLYSRKPQTRRSSSRRSGYAFAHQEGY 1187
>ref|XP_001925489.2| PREDICTED: probable phospholipid-transporting ATPase FetA-like [Sus
scrofa].
Length = 1217
Score = 105 bits (262), Expect = 7e-23
Identities = 61/201 (30%), Positives = 107/201 (53%), Gaps = 3/201 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
+++ W I YN+++T++P L L +F++ + L++PELY+ Q+ L FN K F +
Sbjct: 962 VYDTWFITFYNLVYTSLPVLGLSLFDQDVNETWSLRFPELYEPGQHNLYFNKKEFVKCLV 1021
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKT-SDYLLLGNFVYTFVVITVCLKAGLETSYWTW 379
+G++ S++LF+ P+ A+ Y +V +GK SDY V T ++ V + LET+YWT
Sbjct: 1022 HGIYSSLVLFFIPMGAI-YNSVRSDGKEISDYQSFSVIVQTSLLCAVTAQIALETTYWTM 1080
Query: 380 FSHIAIWGSIALW--VVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASL 553
SHI WGS+ + ++FF L P G A + W+ ++ V +
Sbjct: 1081 ISHIFTWGSLGFYFCILFFLYSDGLCLMFPNVFQFLGVARNTLNLPQMWLSVILSMVLCI 1140
Query: 554 LLDVVYKVVKRTAFKTLVDEV 616
L + Y+ +K + VD++
Sbjct: 1141 LPVIGYQFLKPLFWPVSVDKI 1161
>ref|XP_003125772.1| PREDICTED: probable phospholipid-transporting ATPase ID [Sus scrofa].
Length = 1225
Score = 104 bits (259), Expect = 2e-22
Identities = 55/201 (27%), Positives = 108/201 (53%), Gaps = 2/201 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
+++++ I LYN+++T++P L +G+F++ ++ ++YP+LY+ Q L FN + F++
Sbjct: 935 VYDQYFITLYNIVYTSLPVLAMGVFDQDVPEQRSMEYPKLYEPGQLNLLFNKREFFICIA 994
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
G++ SV++F+ P T + +DY V T +VI V ++ GL+T YWT
Sbjct: 995 QGIYTSVLMFFIPYGVFAEATRDDGTQLADYQSFAVTVATSLVIVVSVQIGLDTGYWTAI 1054
Query: 383 SHIAIWGSIALW-VVFFGIYS-CLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H IWGS+A++ + F ++S L+ P G A + W+ ++ V ++
Sbjct: 1055 NHFFIWGSLAVYFAILFAMHSNGLFDMFPNQFRFVGNAQNTLAQPTVWLTIVLTTVVCIM 1114
Query: 557 LDVVYKVVKRTAFKTLVDEVQ 619
V ++ ++ L D V+
Sbjct: 1115 PVVAFRFLRLNLKPDLSDTVR 1135
>ref|XP_003121763.2| PREDICTED: probable phospholipid-transporting ATPase IC [Sus scrofa].
Length = 1253
Score = 102 bits (254), Expect = 6e-22
Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 7/244 (2%)
Frame = +2
Query: 26 FERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCLN 205
+E W I LYNV+++++P L +G+ ++ + L++P LY Q L FN + F+V L+
Sbjct: 983 YEDWFITLYNVLYSSLPVLLMGLLDQDVSDKLSLRFPGLYVVGQRDLLFNYRRFFVSLLH 1042
Query: 206 GLFHSVILFWFPLKALQYGTVFGNGKT-SDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
G+ S+ILF+ P A TV +G+ SDY + + ++ITV + GL+TSYWT+
Sbjct: 1043 GILTSMILFFIPFGA-YLQTVGQDGEAPSDYQSFAVTIASALIITVNFQIGLDTSYWTFV 1101
Query: 383 SHIAIWGSIALWV-VFFGIYSC-LWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+ +I+GSIAL+ + F +S + P A +G A+ W+ ++ LL
Sbjct: 1102 NAFSIFGSIALYFGIMFDFHSAGIHVLFPSAFQFTGTASNALRQPYIWLTIILTVAVCLL 1161
Query: 557 LDVVYKVVKRTAFKTLVDEVQE----LEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLN 724
V + + T + + D++Q+ L+A+ Q V + ++ R ++ + +
Sbjct: 1162 PVVAIRFLSMTIWPSESDKIQKHRKRLKAEEQWKRRQVFRRGVSTRRSAYAFSHQRGYAD 1221
Query: 725 LYHS 736
L S
Sbjct: 1222 LISS 1225
>ref|XP_003132606.2| PREDICTED: LOW QUALITY PROTEIN: probable phospholipid-transporting
ATPase IF [Sus scrofa].
Length = 1118
Score = 93.6 bits (231), Expect = 3e-19
Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 6/205 (2%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFER----SCRKENMLKYPELYKTSQNALDFNTKVFW 190
L++ + LYN+ FT++P L + E+ + N + ++ K Q L T ++W
Sbjct: 917 LYDSVYLTLYNICFTSLPILIYSLLEQHMWITISHRNSC-FXDISKNRQ--LSMKTFLYW 973
Query: 191 VHCLNGLFHSVILFWFPLKALQYGT-VFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETS 367
+ G H+ I F+ + T + GNG+ G V+T +VITV K LET
Sbjct: 974 T--ILGFSHAFIFFFGSYFLIGKDTSLLGNGQMFGNWTFGTLVFTVMVITVTAKMALETH 1031
Query: 368 YWTWFSHIAIWGSIALWVVFFGIY-SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPV 544
+WTW +H+ WGSI + +F Y LWP + + +M L SSG W ++ + V
Sbjct: 1032 FWTWINHLVTWGSILFYFIFSLFYGGILWPFLG-SQNMYFVFIELLSSGSAWFAIILMVV 1090
Query: 545 ASLLLDVVYKVVKRTAFKTLVDEVQ 619
L LD+V KV R T +++ Q
Sbjct: 1091 TCLFLDIVKKVFDRQLHPTNIEKAQ 1115
>ref|XP_003135474.1| PREDICTED: probable phospholipid-transporting ATPase IG isoform 1
[Sus scrofa].
Length = 1119
Score = 86.3 bits (212), Expect = 4e-17
Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 3/190 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELY-KTSQNA-LDFNTKVFWVH 196
L++ + +YN+ FT++P L + E+ + + P LY K S NA L ++W
Sbjct: 905 LYDAAYLTMYNICFTSLPILAYSLLEQHINIDTLTSDPRLYMKISGNAMLQLGPFLYWTF 964
Query: 197 CLNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWT 376
F + F+ Q ++ N K G V+T +V TV LK L+T +WT
Sbjct: 965 L--AAFEGTVFFFGTYFLFQTSSLEENAKVYGNWTFGTIVFTVLVFTVTLKLALDTRFWT 1022
Query: 377 WFSHIAIWGSIALWVVF-FGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASL 553
W +H IWGS+A +V F F +WP + M A + SS W+ ++ + SL
Sbjct: 1023 WINHFVIWGSLAFYVFFSFFWGGIIWPFLKQ-QRMYFVFAQMLSSVSTWLAIVLLIFISL 1081
Query: 554 LLDVVYKVVK 583
+++ V+K
Sbjct: 1082 FPEILLIVLK 1091
>ref|XP_003360511.1| PREDICTED: probable phospholipid-transporting ATPase IG isoform 2
[Sus scrofa].
Length = 1132
Score = 86.3 bits (212), Expect = 4e-17
Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 3/190 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELY-KTSQNA-LDFNTKVFWVH 196
L++ + +YN+ FT++P L + E+ + + P LY K S NA L ++W
Sbjct: 905 LYDAAYLTMYNICFTSLPILAYSLLEQHINIDTLTSDPRLYMKISGNAMLQLGPFLYWTF 964
Query: 197 CLNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWT 376
F + F+ Q ++ N K G V+T +V TV LK L+T +WT
Sbjct: 965 L--AAFEGTVFFFGTYFLFQTSSLEENAKVYGNWTFGTIVFTVLVFTVTLKLALDTRFWT 1022
Query: 377 WFSHIAIWGSIALWVVF-FGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASL 553
W +H IWGS+A +V F F +WP + M A + SS W+ ++ + SL
Sbjct: 1023 WINHFVIWGSLAFYVFFSFFWGGIIWPFLKQ-QRMYFVFAQMLSSVSTWLAIVLLIFISL 1081
Query: 554 LLDVVYKVVK 583
+++ V+K
Sbjct: 1082 FPEILLIVLK 1091
>ref|XP_003356959.1| PREDICTED: probable phospholipid-transporting ATPase VD-like, partial
[Sus scrofa].
Length = 1326
Score = 73.9 bits (180), Expect = 2e-13
Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 3/185 (1%)
Frame = +2
Query: 11 STVGLFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFW 190
S + + W + +N++FT+ PP+ G+ E+ E +L+ PELY++ Q + + FW
Sbjct: 792 SGTSMTDYWVLIFFNLLFTSAPPVIYGVLEKDVSAEMLLQLPELYRSGQRSEAYLPHTFW 851
Query: 191 VHCLNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSY 370
+ L+ + S++ F+ P Q G D GN + T + + L +E+
Sbjct: 852 ITLLDAFYQSLVCFFVPYYTYQ-------GSDIDIFAFGNPLNTAALFIILLHLVIESKS 904
Query: 371 WTWFSHIAIWGSIALWVVF---FGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIP 541
TW + I GSI + +F FG C+ P P +A ML VF++ +
Sbjct: 905 LTWIHMLVIVGSILCYFLFALAFGA-MCVTCNPPSNPYWIMQAHML--DPVFYLVCVLTT 961
Query: 542 VASLL 556
+LL
Sbjct: 962 CIALL 966
>ref|XP_003123063.2| PREDICTED: probable phospholipid-transporting ATPase IK [Sus scrofa].
Length = 1019
Score = 70.5 bits (171), Expect = 2e-12
Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 6/272 (2%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
L+E W + L+N+++T +P L +G+FE+ E L+ PELY Q FN VF
Sbjct: 531 LYEGWFLALFNLLYTTLPVLYIGLFEQDVSAEQSLELPELYIVGQKDELFNYWVFLQAIG 590
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
+G+ S++ F+ L G SDY V ++++ ++ L YWT
Sbjct: 591 HGMATSLVNFFMTLWISHDSA--GPVSFSDYQSFAVVVALSGLLSITMEVILIIKYWTVL 648
Query: 383 SHIAIWGSIALWVVFFGIYSCLW---PAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVAS- 550
S +AI+ S+ +VV + +W + P + + +L + + LL + + +
Sbjct: 649 SILAIFFSLCFYVVMTCLTQSIWLFKISPKTFPFLYADLNVLSQPPILLVILLNVSLNTL 708
Query: 551 --LLLDVVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLN 724
L V+Y+ +KR K E +E E K+ + VF +
Sbjct: 709 PVLAFRVIYQALKRPPLK----EKEEEEGKTPS-----------------EEVFVVEPMP 747
Query: 725 LYHSESLQQNLLHGYAFSQDENGIVSQSEVIR 820
H ES + + ++ + +++Q ++R
Sbjct: 748 YLHRESRTRRSSYAFSHREGYADLITQGTILR 779
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,398,281
Number of extensions: 889208
Number of successful extensions: 2467
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2458
Number of HSP's successfully gapped: 11
Length of query: 508
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 405
Effective length of database: 8,779,541
Effective search space: 3555714105
Effective search space used: 3555714105
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008809
(1526 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034088.1| probable phospholipid-transporting ATPase IA... 559 e-159
Alignment gi|NP_033857.1| probable phospholipid-transporting ATPase IA is... 559 e-159
Alignment gi|NP_056618.1| probable phospholipid-transporting ATPase IB [M... 356 2e-98
Alignment gi|NP_001074413.2| ATPase, class I, type 8B, member 4 [Mus musc... 107 3e-23
Alignment gi|NP_083846.2| ATPase, class VI, type 11B [Mus musculus]. 105 1e-22
Alignment gi|NP_001001488.2| probable phospholipid-transporting ATPase IC... 104 2e-22
Alignment gi|NP_056619.1| probable phospholipid-transporting ATPase IH [M... 103 4e-22
Alignment gi|NP_001074651.1| probable phospholipid-transporting ATPase ID... 102 8e-22
Alignment gi|NP_033858.2| probable phospholipid-transporting ATPase VA [M... 91 3e-18
Alignment gi|NP_796169.2| probable phospholipid-transporting ATPase FetA ... 87 3e-17
>ref|NP_001034088.1| probable phospholipid-transporting ATPase IA isoform a [Mus
musculus].
Length = 1164
Score = 559 bits (1441), Expect = e-159
Identities = 270/278 (97%), Positives = 275/278 (98%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL
Sbjct: 887 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 946
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF
Sbjct: 947 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 1006
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
SHIAIWGSIALWVVFFGIYS LWPAVPMAPDMSGEAAMLFSSGVFW+GLL IPVASLLLD
Sbjct: 1007 SHIAIWGSIALWVVFFGIYSSLWPAVPMAPDMSGEAAMLFSSGVFWVGLLSIPVASLLLD 1066
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLNLYHSES 742
V+YKV+KRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNH+NLY SES
Sbjct: 1067 VLYKVIKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHVNLYRSES 1126
Query: 743 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPEEW 856
LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRP+EW
Sbjct: 1127 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPDEW 1164
>ref|NP_033857.1| probable phospholipid-transporting ATPase IA isoform b [Mus
musculus].
Length = 1149
Score = 559 bits (1441), Expect = e-159
Identities = 270/278 (97%), Positives = 275/278 (98%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL
Sbjct: 872 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 931
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF
Sbjct: 932 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 991
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
SHIAIWGSIALWVVFFGIYS LWPAVPMAPDMSGEAAMLFSSGVFW+GLL IPVASLLLD
Sbjct: 992 SHIAIWGSIALWVVFFGIYSSLWPAVPMAPDMSGEAAMLFSSGVFWVGLLSIPVASLLLD 1051
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLNLYHSES 742
V+YKV+KRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNH+NLY SES
Sbjct: 1052 VLYKVIKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHVNLYRSES 1111
Query: 743 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPEEW 856
LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRP+EW
Sbjct: 1112 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPDEW 1149
>ref|NP_056618.1| probable phospholipid-transporting ATPase IB [Mus musculus].
Length = 1148
Score = 356 bits (914), Expect = 2e-98
Identities = 160/277 (57%), Positives = 215/277 (77%), Gaps = 4/277 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
LFERWCIGLYNV+FTA+PP TLGIFERSC +E+ML++P+LY+ +QNA FNTKVFW HC+
Sbjct: 867 LFERWCIGLYNVIFTALPPFTLGIFERSCTQESMLRFPQLYRITQNAEGFNTKVFWGHCI 926
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
N L HS+ILFW P+KAL++ T +G +DYL +GN VYT+VV+TVCLKAGLET+ WT F
Sbjct: 927 NALVHSLILFWVPMKALEHDTPVTSGHATDYLFVGNIVYTYVVVTVCLKAGLETTAWTKF 986
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
SH+A+WGS+ +W+VFFG+YS +WP +P+APDM G+A M+ SS FW+GL +P A L+ D
Sbjct: 987 SHLAVWGSMLIWLVFFGVYSTIWPTIPIAPDMKGQATMVLSSAYFWLGLFLVPTACLIED 1046
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVL----GKSLTERAQLLKNVFKKNHLNLY 730
V ++ K T KTL++EVQELE KS+ G +L GK + ER +L+K + +K L+
Sbjct: 1047 VAWRAAKHTCKKTLLEEVQELETKSRVMGKAMLRDSNGKRMNERDRLIKRLSRKTPPTLF 1106
Query: 731 HSESLQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQ 841
+ S+QQ + HGYAFSQ+E+G V+Q E++RAYDTTK+
Sbjct: 1107 RTGSIQQCVSHGYAFSQEEHGAVTQEEIVRAYDTTKE 1143
>ref|NP_001074413.2| ATPase, class I, type 8B, member 4 [Mus musculus].
Length = 1194
Score = 107 bits (266), Expect = 3e-23
Identities = 60/208 (28%), Positives = 109/208 (52%), Gaps = 9/208 (4%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
++++W I L+N+++T++P L +G+F++ ++N + YP+LY+ Q L FN + F++
Sbjct: 903 VYDQWFITLFNIVYTSLPVLAMGMFDQDINEQNSMDYPQLYEPGQLNLLFNKRRFFICVA 962
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
+G++ S+ LF+ P A +D V T +VI V ++ L+TSYWT
Sbjct: 963 HGIYTSLALFFIPYGAFYNVAAEDGQHIADLQSFAVTVATSLVIVVSIQIALDTSYWTVV 1022
Query: 383 SHIAIWGSIALWVVF---------FGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLF 535
+H+ IWGS+A + FGI+ +P V G A S W+ +L
Sbjct: 1023 NHVFIWGSVATYFSILLAMHSDGVFGIFPRHFPFV-------GNARHSLSQKFVWLVVLL 1075
Query: 536 IPVASLLLDVVYKVVKRTAFKTLVDEVQ 619
V S++ VV + +K + +L D+++
Sbjct: 1076 TAVTSVMPVVVVRFLKMYLYPSLSDQIR 1103
>ref|NP_083846.2| ATPase, class VI, type 11B [Mus musculus].
Length = 1175
Score = 105 bits (261), Expect = 1e-22
Identities = 69/208 (33%), Positives = 103/208 (49%), Gaps = 3/208 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKT-SQNALDFNTKVFWVHC 199
L++ + LYN+ FT++P L + E+ + P LY+ S+N L + K F
Sbjct: 906 LYDSVYLTLYNICFTSLPVLIYSLVEQHIDPHVLQSKPTLYRDISKNGL-LSIKAFLYWT 964
Query: 200 LNGLFHSVILFWFPLKALQYGT-VFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWT 376
+ G H+ I F+ + T + GNG+ G V+T +VITV +K LET +WT
Sbjct: 965 VLGFSHAFIFFFGSYFLVGKDTSLLGNGQMFGNWTFGTLVFTVMVITVTVKMALETHFWT 1024
Query: 377 WFSHIAIWGSIALWVVFFGIY-SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASL 553
W +H+ WGSI + +F Y LWP + + +M L SSG W +L + V L
Sbjct: 1025 WINHLVTWGSIIFYFIFSLFYGGILWPFLG-SQNMYFVFIQLLSSGSAWFAILLMVVTCL 1083
Query: 554 LLDVVYKVVKRTAFKTLVDEVQELEAKS 637
+DVV KV R T ++ Q EA S
Sbjct: 1084 FIDVVKKVFDRQLHPTSTEKAQLAEAHS 1111
>ref|NP_001001488.2| probable phospholipid-transporting ATPase IC [Mus musculus].
Length = 1251
Score = 104 bits (260), Expect = 2e-22
Identities = 66/202 (32%), Positives = 111/202 (54%), Gaps = 3/202 (1%)
Frame = +2
Query: 26 FERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCLN 205
+E W I LYNV+++++P L +G+ ++ + L++P LY Q L FN K F+V L+
Sbjct: 980 YEDWFITLYNVLYSSLPVLLMGLLDQDVSDKLSLRFPGLYVVGQRDLLFNYKRFFVSLLH 1039
Query: 206 GLFHSVILFWFPLKALQYGTVFGNGKT-SDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
G+ S++LF+ PL A TV +G+ SDY V + +VITV + GL+TSYWT+
Sbjct: 1040 GVLTSMVLFFIPLGA-YLQTVGQDGEAPSDYQSFAVTVASALVITVNFQIGLDTSYWTFV 1098
Query: 383 SHIAIWGSIALWV-VFFGIYSC-LWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+ +I+GSIAL+ + F +S + P A +G A+ W+ ++ LL
Sbjct: 1099 NAFSIFGSIALYFGIMFDFHSAGIHVLFPSAFQFTGTASNALRQPYIWLTIILTVAVCLL 1158
Query: 557 LDVVYKVVKRTAFKTLVDEVQE 622
V + + T + + D++Q+
Sbjct: 1159 PVVAIRFLSMTIWPSESDKIQK 1180
>ref|NP_056619.1| probable phospholipid-transporting ATPase IH [Mus musculus].
Length = 1187
Score = 103 bits (257), Expect = 4e-22
Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 2/204 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKT-SQNALDFNTKVFWVHC 199
L++ + LYN+ FT++P L + E+ + + + P LY+ ++NAL +VF
Sbjct: 914 LYDTAYLTLYNISFTSLPILLYSLMEQHVGIDVLKRDPTLYRDIAKNAL-LRWRVFIYWT 972
Query: 200 LNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTW 379
G+F +++ F+ + TV NG+ G V+T +V+TV LK L+T YWTW
Sbjct: 973 FLGVFDALVFFFGAYFIFENTTVTINGQMFGNWTFGTLVFTVMVLTVTLKLALDTHYWTW 1032
Query: 380 FSHIAIWGSIALWVVFFGIY-SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H IWGS+ ++ F ++ +WP + +ML SSG W+G++ + LL
Sbjct: 1033 INHFVIWGSLLFYIAFSLLWGGVIWPFLSYQRMYYVFISML-SSGPAWLGIILLVTVGLL 1091
Query: 557 LDVVYKVVKRTAFKTLVDEVQELE 628
DV+ KV+ R + T + Q ++
Sbjct: 1092 PDVLKKVLCRQLWPTATERTQNIQ 1115
>ref|NP_001074651.1| probable phospholipid-transporting ATPase ID [Mus musculus].
Length = 1214
Score = 102 bits (254), Expect = 8e-22
Identities = 54/201 (26%), Positives = 107/201 (53%), Gaps = 2/201 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
+++++ I LYN+++T++P L +G+F++ ++ ++YP+LY+ Q L FN + F++
Sbjct: 924 VYDQYFITLYNIVYTSLPVLAMGVFDQDVPEQRSMEYPKLYEPGQLNLLFNKREFFICIA 983
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
G++ SV++F+ P T + +DY V T +VI V ++ GL+T YWT
Sbjct: 984 QGIYTSVLMFFIPYGVFAEATRDDGTQLADYQSFAVTVATSLVIVVSVQIGLDTGYWTAI 1043
Query: 383 SHIAIWGSIALW-VVFFGIYS-CLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H IWGS+A++ + F ++S L+ P G A + W+ + ++
Sbjct: 1044 NHFFIWGSLAVYFAILFAMHSNGLFDMFPNQFRFVGNAQNTLAQPTVWLTIALTTAVCIM 1103
Query: 557 LDVVYKVVKRTAFKTLVDEVQ 619
V ++ ++ + L D V+
Sbjct: 1104 PVVAFRFLRLSLKPDLSDTVR 1124
>ref|NP_033858.2| probable phospholipid-transporting ATPase VA [Mus musculus].
Length = 1508
Score = 90.5 bits (223), Expect = 3e-18
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 2/210 (0%)
Frame = +2
Query: 11 STVGLFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFW 190
S + ++W + +N++F+++P L G+ ++ + +L+ P+LYK+ QN ++ + FW
Sbjct: 1127 SASAMIDQWYLIFFNLLFSSLPQLVTGVLDKDVPADMLLREPQLYKSGQNMEEYRPRAFW 1186
Query: 191 VHCLNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSY 370
++ ++ F S++ F+ P A V D G V + T L G+ET
Sbjct: 1187 LNMVDAAFQSLVCFFIPYLAYYDSDV-------DVFTWGTPVTAIALFTFLLHLGIETKT 1239
Query: 371 WTWFSHIAIWGSIALWVVFFGIY--SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPV 544
WTW + +A S L+ IY SC P P + + L +F++ L P+
Sbjct: 1240 WTWLNWLACGFSTFLFFSVALIYNTSCATCYPPSNPYWTMQT--LLGDPLFYLTCLIAPI 1297
Query: 545 ASLLLDVVYKVVKRTAFKTLVDEVQELEAK 634
A+LL + +K ++ + F T + ++L K
Sbjct: 1298 AALLPRLFFKALQGSLFPTQLQLGRQLAKK 1327
>ref|NP_796169.2| probable phospholipid-transporting ATPase FetA [Mus musculus].
Length = 1183
Score = 87.4 bits (215), Expect = 3e-17
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 8/206 (3%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
+++ W I YN+++T++P L L +FE+ + L YPELY+ Q+ L FN K F L
Sbjct: 924 VYDIWFITFYNLIYTSLPVLGLSLFEKDVNETWSLCYPELYEPGQHNLYFNKKEFVKCLL 983
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKT-----SDYLLLGNFVYTFVVITVCLKAGLETS 367
+G+++S +LF+ P+ GTVF + + SD+ V T ++ + ++ L T+
Sbjct: 984 HGIYNSFVLFFVPM-----GTVFNSERNDGKDISDFQSFSLLVQTTLIGVMTMQIALRTT 1038
Query: 368 YWTWFSHIAIWGSIALWVVFFGIYSC---LWPAVPMAPDMSGEAAMLFSSGVFWMGLLFI 538
WT +H WGS+ L+ I C L P + G A S W+ L+
Sbjct: 1039 SWTMINHTFTWGSLGLYFCIL-ILLCSDGLCLRYPSIFNFLGVARNSLSQPQIWLCLILS 1097
Query: 539 PVASLLLDVVYKVVKRTAFKTLVDEV 616
+ ++ + Y ++ + D+V
Sbjct: 1098 TILCMIPLIGYNFLRPLLWPINADKV 1123
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,470,076
Number of extensions: 1222866
Number of successful extensions: 3274
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3259
Number of HSP's successfully gapped: 15
Length of query: 508
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 402
Effective length of database: 12,433,743
Effective search space: 4998364686
Effective search space used: 4998364686
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008809
(1526 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098999.1| probable phospholipid-transporting ATPase IA... 563 e-160
Alignment gi|NP_006086.1| probable phospholipid-transporting ATPase IA is... 563 e-160
Alignment gi|NP_057613.4| probable phospholipid-transporting ATPase IB [H... 365 e-101
Alignment gi|NP_079113.2| probable phospholipid-transporting ATPase IM [H... 118 1e-26
Alignment gi|NP_115565.3| probable phospholipid-transporting ATPase IH is... 108 1e-23
Alignment gi|NP_056020.2| probable phospholipid-transporting ATPase IH is... 107 2e-23
Alignment gi|NP_005594.1| probable phospholipid-transporting ATPase IC [H... 105 9e-23
Alignment gi|NP_065185.1| probable phospholipid-transporting ATPase ID is... 103 3e-22
Alignment gi|NP_055431.1| probable phospholipid-transporting ATPase IF [H... 103 6e-22
Alignment gi|NP_077816.1| probable phospholipid-transporting ATPase VA [H... 97 4e-20
>ref|NP_001098999.1| probable phospholipid-transporting ATPase IA isoform b [Homo
sapiens].
Length = 1149
Score = 563 bits (1451), Expect = e-160
Identities = 271/278 (97%), Positives = 275/278 (98%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL
Sbjct: 872 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 931
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
NGLFHSVILFWFPLKALQYGT FGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF
Sbjct: 932 NGLFHSVILFWFPLKALQYGTAFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 991
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
SHIAIWGSIALWVVFFGIYS LWPA+PMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD
Sbjct: 992 SHIAIWGSIALWVVFFGIYSSLWPAIPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 1051
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLNLYHSES 742
VVYKV+KRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNH+NLY SES
Sbjct: 1052 VVYKVIKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHVNLYRSES 1111
Query: 743 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPEEW 856
LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRP+EW
Sbjct: 1112 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPDEW 1149
>ref|NP_006086.1| probable phospholipid-transporting ATPase IA isoform a [Homo
sapiens].
Length = 1164
Score = 563 bits (1451), Expect = e-160
Identities = 271/278 (97%), Positives = 275/278 (98%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL
Sbjct: 887 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 946
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
NGLFHSVILFWFPLKALQYGT FGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF
Sbjct: 947 NGLFHSVILFWFPLKALQYGTAFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 1006
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
SHIAIWGSIALWVVFFGIYS LWPA+PMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD
Sbjct: 1007 SHIAIWGSIALWVVFFGIYSSLWPAIPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 1066
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHLNLYHSES 742
VVYKV+KRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNH+NLY SES
Sbjct: 1067 VVYKVIKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHVNLYRSES 1126
Query: 743 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPEEW 856
LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRP+EW
Sbjct: 1127 LQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQRPDEW 1164
>ref|NP_057613.4| probable phospholipid-transporting ATPase IB [Homo sapiens].
Length = 1188
Score = 365 bits (936), Expect = e-101
Identities = 169/278 (60%), Positives = 215/278 (77%), Gaps = 4/278 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
LFERWCIGLYNV+FTA+PP TLGIFERSC +E+ML++P+LYK +QN FNTKVFW HC+
Sbjct: 907 LFERWCIGLYNVIFTALPPFTLGIFERSCTQESMLRFPQLYKITQNGEGFNTKVFWGHCI 966
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
N L HS+ILFWFP+KAL++ TV +G +DYL +GN VYT+VV+TVCLKAGLET+ WT F
Sbjct: 967 NALVHSLILFWFPMKALEHDTVLTSGHATDYLFVGNIVYTYVVVTVCLKAGLETTAWTKF 1026
Query: 383 SHIAIWGSIALWVVFFGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLD 562
SH+A+WGS+ W+VFFGIYS +WP +P+APDM G+A M+ SS FW+GL +P A L+ D
Sbjct: 1027 SHLAVWGSMLTWLVFFGIYSTIWPTIPIAPDMRGQATMVLSSAHFWLGLFLVPTACLIED 1086
Query: 563 VVYKVVKRTAFKTLVDEVQELEAKSQDPGAVVL----GKSLTERAQLLKNVFKKNHLNLY 730
V ++ K T KTL++EVQELE KS+ G VL GK L ER +L+K + +K L+
Sbjct: 1087 VAWRAAKHTCKKTLLEEVQELETKSRVLGKAVLRDSNGKRLNERDRLIKRLGRKTPPTLF 1146
Query: 731 HSESLQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQR 844
SLQQ + HGYAFSQ+E+G VSQ EVIRAYDTTK++
Sbjct: 1147 RGSSLQQGVPHGYAFSQEEHGAVSQEEVIRAYDTTKKK 1184
>ref|NP_079113.2| probable phospholipid-transporting ATPase IM [Homo sapiens].
Length = 1192
Score = 118 bits (296), Expect = 1e-26
Identities = 69/223 (30%), Positives = 127/223 (56%), Gaps = 13/223 (5%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
++++W I L+N+++T++P L +GIF++ +N + P+LYK Q L FN + F++ L
Sbjct: 901 VYDQWFITLFNIVYTSLPVLAMGIFDQDVSDQNSVDCPQLYKPGQLNLLFNKRKFFICVL 960
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGK-TSDYLLLGNFVYTFVVITVCLKAGLETSYWTW 379
+G++ S++LF+ P A Y +G+ +DY + T +VI V ++ L+TSYWT+
Sbjct: 961 HGIYTSLVLFFIPYGAF-YNVAGEDGQHIADYQSFAVTMATSLVIVVSVQIALDTSYWTF 1019
Query: 380 FSHIAIWGSIALW--VVF-------FGIYSCLWPAVPMAPDMSGEAAMLFSSGVFWMGLL 532
+H+ IWGSIA++ ++F FGI+ +P V G A + W+ +L
Sbjct: 1020 INHVFIWGSIAIYFSILFTMHSNGIFGIFPNQFPFV-------GNARHSLTQKCIWLVIL 1072
Query: 533 FIPVASLLLDVVYKVVKRTAFKTLVDEV---QELEAKSQDPGA 652
VAS++ V ++ +K + TL D++ Q+ + K++ P +
Sbjct: 1073 LTTVASVMPVVAFRFLKVDLYPTLSDQIRRWQKAQKKARPPSS 1115
>ref|NP_115565.3| probable phospholipid-transporting ATPase IH isoform b [Homo
sapiens].
Length = 1191
Score = 108 bits (271), Expect = 1e-23
Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 2/209 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYK-TSQNALDFNTKVFWVHC 199
L++ + LYN+ FT++P L + E+ + + + P LY+ ++NAL +VF
Sbjct: 911 LYDTAYLTLYNISFTSLPILLYSLMEQHVGIDVLKRDPTLYRDVAKNAL-LRWRVFIYWT 969
Query: 200 LNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTW 379
L GLF +++ F+ + TV NG+ G V+T +V TV LK L+T YWTW
Sbjct: 970 LLGLFDALVFFFGAYFVFENTTVTSNGQIFGNWTFGTLVFTVMVFTVTLKLALDTHYWTW 1029
Query: 380 FSHIAIWGSIALWVVFFGIY-SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H IWGS+ +VVF ++ +WP + M + SSG W+ ++ + SLL
Sbjct: 1030 INHFVIWGSLLFYVVFSLLWGGVIWPFLNY-QRMYYVFIQMLSSGPAWLAIVLLVTISLL 1088
Query: 557 LDVVYKVVKRTAFKTLVDEVQELEAKSQD 643
DV+ KV+ R + T + VQ A+ +D
Sbjct: 1089 PDVLKKVLCRQLWPTATERVQNGCAQPRD 1117
>ref|NP_056020.2| probable phospholipid-transporting ATPase IH isoform a [Homo
sapiens].
Length = 1134
Score = 107 bits (268), Expect = 2e-23
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 2/201 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYK-TSQNALDFNTKVFWVHC 199
L++ + LYN+ FT++P L + E+ + + + P LY+ ++NAL +VF
Sbjct: 911 LYDTAYLTLYNISFTSLPILLYSLMEQHVGIDVLKRDPTLYRDVAKNAL-LRWRVFIYWT 969
Query: 200 LNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTW 379
L GLF +++ F+ + TV NG+ G V+T +V TV LK L+T YWTW
Sbjct: 970 LLGLFDALVFFFGAYFVFENTTVTSNGQIFGNWTFGTLVFTVMVFTVTLKLALDTHYWTW 1029
Query: 380 FSHIAIWGSIALWVVFFGIY-SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H IWGS+ +VVF ++ +WP + M + SSG W+ ++ + SLL
Sbjct: 1030 INHFVIWGSLLFYVVFSLLWGGVIWPFLNY-QRMYYVFIQMLSSGPAWLAIVLLVTISLL 1088
Query: 557 LDVVYKVVKRTAFKTLVDEVQ 619
DV+ KV+ R + T + VQ
Sbjct: 1089 PDVLKKVLCRQLWPTATERVQ 1109
>ref|NP_005594.1| probable phospholipid-transporting ATPase IC [Homo sapiens].
Length = 1251
Score = 105 bits (263), Expect = 9e-23
Identities = 67/202 (33%), Positives = 111/202 (54%), Gaps = 3/202 (1%)
Frame = +2
Query: 26 FERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCLN 205
+E W I LYNV++T++P L +G+ ++ + L++P LY Q L FN K F+V L+
Sbjct: 980 YEDWFITLYNVLYTSLPVLLMGLLDQDVSDKLSLRFPGLYIVGQRDLLFNYKRFFVSLLH 1039
Query: 206 GLFHSVILFWFPLKALQYGTVFGNGKT-SDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
G+ S+ILF+ PL A TV +G+ SDY + + +VITV + GL+TSYWT+
Sbjct: 1040 GVLTSMILFFIPLGA-YLQTVGQDGEAPSDYQSFAVTIASALVITVNFQIGLDTSYWTFV 1098
Query: 383 SHIAIWGSIALWV-VFFGIYSC-LWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+ +I+GSIAL+ + F +S + P A +G A+ W+ ++ LL
Sbjct: 1099 NAFSIFGSIALYFGIMFDFHSAGIHVLFPSAFQFTGTASNALRQPYIWLTIILTVAVCLL 1158
Query: 557 LDVVYKVVKRTAFKTLVDEVQE 622
V + + T + + D++Q+
Sbjct: 1159 PVVAIRFLSMTIWPSESDKIQK 1180
>ref|NP_065185.1| probable phospholipid-transporting ATPase ID isoform a [Homo
sapiens].
Length = 1223
Score = 103 bits (258), Expect = 3e-22
Identities = 55/201 (27%), Positives = 108/201 (53%), Gaps = 2/201 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
+++++ I LYN+++T++P L +G+F++ ++ ++YP+LY+ Q L FN + F++
Sbjct: 933 VYDQYFITLYNIVYTSLPVLAMGVFDQDVPEQRSMEYPKLYEPGQLNLLFNKREFFICIA 992
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
G++ SV++F+ P T + +DY V T +VI V ++ GL+T YWT
Sbjct: 993 QGIYTSVLMFFIPYGVFADATRDDGTQLADYQSFAVTVATSLVIVVSVQIGLDTGYWTAI 1052
Query: 383 SHIAIWGSIALW-VVFFGIYS-CLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+H IWGS+A++ + F ++S L+ P G A + W+ ++ V ++
Sbjct: 1053 NHFFIWGSLAVYFAILFAMHSNGLFDMFPNQFRFVGNAQNTLAQPTVWLTIVLTTVVCIM 1112
Query: 557 LDVVYKVVKRTAFKTLVDEVQ 619
V ++ ++ L D V+
Sbjct: 1113 PVVAFRFLRLNLKPDLSDTVR 1133
>ref|NP_055431.1| probable phospholipid-transporting ATPase IF [Homo sapiens].
Length = 1177
Score = 103 bits (256), Expect = 6e-22
Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 4/209 (1%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYK--TSQNALDFNTKVFWVH 196
L++ + LYN+ FT++P L + E+ + P LY+ + L T ++W
Sbjct: 907 LYDSVYLTLYNICFTSLPILIYSLLEQHVDPHVLQNKPTLYRDISKNRLLSIKTFLYWT- 965
Query: 197 CLNGLFHSVILFWFPLKALQYGT-VFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYW 373
+ G H+ I F+ + T + GNG+ G V+T +VITV +K LET +W
Sbjct: 966 -ILGFSHAFIFFFGSYLLIGKDTSLLGNGQMFGNWTFGTLVFTVMVITVTVKMALETHFW 1024
Query: 374 TWFSHIAIWGSIALWVVFFGIY-SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVAS 550
TW +H+ WGSI + VF Y LWP + + +M L SSG W ++ + V
Sbjct: 1025 TWINHLVTWGSIIFYFVFSLFYGGILWPFLG-SQNMYFVFIQLLSSGSAWFAIILMVVTC 1083
Query: 551 LLLDVVYKVVKRTAFKTLVDEVQELEAKS 637
L LD++ KV R T ++ Q E +
Sbjct: 1084 LFLDIIKKVFDRHLHPTSTEKAQLTETNA 1112
>ref|NP_077816.1| probable phospholipid-transporting ATPase VA [Homo sapiens].
Length = 1499
Score = 97.1 bits (240), Expect = 4e-20
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 2/207 (0%)
Frame = +2
Query: 23 LFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELYKTSQNALDFNTKVFWVHCL 202
+ ++W + +N++F+++PPL G+ +R +L P+LYK+ QN ++ + FW +
Sbjct: 1117 MIDQWYLIFFNLLFSSLPPLVTGVLDRDVPANVLLTNPQLYKSGQNMEEYRPRTFWFNMA 1176
Query: 203 NGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLKAGLETSYWTWF 382
+ F S++ F P A V D G + T ++T L G+ET WTW
Sbjct: 1177 DAAFQSLVCFSIPYLAYYDSNV-------DLFTWGTPIVTIALLTFLLHLGIETKTWTWL 1229
Query: 383 SHIAIWGSIALWVVFFGIY--SCLWPAVPMAPDMSGEAAMLFSSGVFWMGLLFIPVASLL 556
+ I S+ L+ IY SC P P + +A L VF++ L PVA+LL
Sbjct: 1230 NWITCGFSVLLFFTVALIYNASCATCYPPSNPYWTMQA--LLGDPVFYLTCLMTPVAALL 1287
Query: 557 LDVVYKVVKRTAFKTLVDEVQELEAKS 637
+ ++ ++ F T + ++L KS
Sbjct: 1288 PRLFFRSLQGRVFPTQLQLARQLTRKS 1314
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,685,972
Number of extensions: 1423491
Number of successful extensions: 3990
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3977
Number of HSP's successfully gapped: 16
Length of query: 508
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 401
Effective length of database: 14,770,016
Effective search space: 5922776416
Effective search space used: 5922776416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008809
(1526 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 186 2e-44
>Sscrofa_Chr08
|| Length = 148491826
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 668 agcctcacagagagggcgcaactgctcaagaacgtctttaagaagaaccacttgaacttg 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35077746 agcctcacagagagggcgcaactgctcaagaacgtctttaagaagaaccacttgaacttg 35077687
Query: 728 taccactcagaatcactgcagcaaaacctgctcc 761
||||||||||||||||||||||||||||||||||
Sbjct: 35077686 taccactcagaatcactgcagcaaaacctgctcc 35077653
Score = 176 bits (89), Expect = 2e-41
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 577 tgtcaagaggactgcttttaaaacattagtagatgaagttcaagagctggaggcaaaatc 636
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 35072600 tgtcaagaggactgcttttaaaacattagtagatgaagttcaggagctggaggcaaaatc 35072659
Query: 637 tcaagacccaggagcagttgtgcttggaaaaag 669
|||||||||||||||||||||||||||||||||
Sbjct: 35072660 tcaagacccaggagcagttgtgcttggaaaaag 35072692
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 180 aggttttctgggttcattgtttaaatggcctcttccactcagttattctgttttggtttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35057622 aggttttctgggttcattgtttaaatggcctcttccactcagttattctgttttggtttc 35057681
Query: 240 cactaaaagcccttcagtatggta 263
||||||||||||||||||||||||
Sbjct: 35057682 cactaaaagcccttcagtatggta 35057705
Score = 125 bits (63), Expect = 8e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 260 ggtactgtatttggaaacgggaaaacctccgattacttgctgttgggcaactttgtttac 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35063703 ggtactgtatttggaaacgggaaaacctccgattacttgctgttgggcaactttgtttac 35063762
Query: 320 act 322
|||
Sbjct: 35063763 act 35063765
Score = 105 bits (53), Expect = 7e-20
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 323 tttgtggtgataactgtgtgtttgaaagctggattggagacatcatattggacctgg 379
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 35066516 tttgtggtgataactgtgtgtttgaaagctggattggagacatcgtattggacctgg 35066572
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,506,727
Number of extensions: 306
Number of successful extensions: 306
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 5
Length of query: 1526
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1505
Effective length of database: 2,808,413,156
Effective search space: 4226661799780
Effective search space used: 4226661799780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)