Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008813
(1015 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029467.1| NAD-dependent deacetylase sirtuin-5 [Bos tau... 478 e-135
Alignment gi|NP_001069253.1| NAD-dependent ADP-ribosyltransferase sirtuin... 94 2e-19
Alignment gi|NP_001179909.1| NAD-dependent deacetylase sirtuin-1 [Bos tau... 85 9e-17
Alignment gi|XP_002698901.1| PREDICTED: sirtuin (silent mating type infor... 85 9e-17
Alignment gi|NP_001193598.1| NAD-dependent deacetylase sirtuin-3, mitocho... 85 1e-16
Alignment gi|NP_001107003.1| NAD-dependent deacetylase sirtuin-2 [Bos tau... 75 1e-13
Alignment gi|NP_001068685.1| NAD-dependent deacetylase sirtuin-7 [Bos tau... 55 1e-07
Alignment gi|NP_001091553.1| NAD-dependent deacetylase sirtuin-6 [Bos tau... 55 1e-07
>ref|NP_001029467.1| NAD-dependent deacetylase sirtuin-5 [Bos taurus].
Length = 310
Score = 478 bits (1229), Expect = e-135
Identities = 227/261 (86%), Positives = 243/261 (93%)
Frame = +2
Query: 233 MPPLWGVPGRLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAG 412
MPPLW + RL SQL CGL SP S T+IC TMARPSS+MADFRK FAKAKHIVVISGAG
Sbjct: 1 MPPLWIIRNRLFSQLYCGLKSPVSTQTKICLTMARPSSNMADFRKCFAKAKHIVVISGAG 60
Query: 413 VSAESGIPTFRGAGGYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGRAPNAGHLA 592
+SAESG+PTFRGAGGYWRKW+AQDLATPQAFARNPS+VWEFYH+RREVVQ PNAGHLA
Sbjct: 61 ISAESGVPTFRGAGGYWRKWKAQDLATPQAFARNPSQVWEFYHYRREVVQSTEPNAGHLA 120
Query: 593 IAQCEARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGAVAENYKSPI 772
IA+C+ARLH QGR++VVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCG VAENYKSPI
Sbjct: 121 IAECQARLHRQGRQVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPI 180
Query: 773 CPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEEVDRELA 952
CPALSGKGAP+P+TQDA IPVEKLPRCEEAGCGGLLRPHVVWFGENLDP ILEEVD+ELA
Sbjct: 181 CPALSGKGAPDPQTQDAGIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDKELA 240
Query: 953 LCDLCLVVGTSSVVYPAALFA 1015
LCDLCLVVGTSSVVYPAA+FA
Sbjct: 241 LCDLCLVVGTSSVVYPAAMFA 261
>ref|NP_001069253.1| NAD-dependent ADP-ribosyltransferase sirtuin-4 [Bos taurus].
Length = 315
Score = 94.0 bits (232), Expect = 2e-19
Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 13/243 (5%)
Frame = +2
Query: 323 PTMARPSSSMADFRKHFAKAKHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQ 499
P+ + + ++ +K ++V++GAG+S ESGIP +R G + + + +
Sbjct: 36 PSPPLDPEKVKELQRFITLSKRLLVMTGAGISTESGIPDYRSEKVGLYARTDRRPIQHGD 95
Query: 500 AFARNP--SRVWEFYHHRREVVQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHR 673
P R W R PN H A++ E RL G+ ++TQN+D LH
Sbjct: 96 FVRSAPVRQRYWARNFVGWPQFSSRQPNPAHWALSNWE-RL---GKLHWLVTQNVDALHT 151
Query: 674 KAGTKNLLEIHGSLFKTRCTSC------GAVAENYK--SPICPALSGKGAPEPET--QDA 823
KAG++ L E+HG + + C C G + E ++ +P A + AP+ + +
Sbjct: 152 KAGSQRLTELHGCMHRVLCLDCGEQTPRGVLQERFQVLNPTWSAEAHGLAPDGDVFLTEE 211
Query: 824 RIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPA 1003
+ ++P C CGG L+P VV+FG+ + P ++ V + + D LVVG+S VY
Sbjct: 212 EVQSFQVPSCSR--CGGPLKPDVVFFGDTVKPDKVDFVHKRVKEADSLLVVGSSLQVYSG 269
Query: 1004 ALF 1012
F
Sbjct: 270 YRF 272
>ref|NP_001179909.1| NAD-dependent deacetylase sirtuin-1 [Bos taurus].
Length = 734
Score = 85.1 bits (209), Expect = 9e-17
Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 9/231 (3%)
Frame = +2
Query: 344 SSMADFRKHFAKAKHIVVISGAGVSAESGIPTFRGAGGYWRKWQAQ--DLATPQA----- 502
+++ D K + K I+V++GAGVS GIP FR G + + DL PQA
Sbjct: 226 NTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAIDFPDLPDPQAMFDIE 285
Query: 503 -FARNPSRVWEFYHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRK 676
F ++P F+ +E+ G+ P+ H IA + +G+ L TQNID L +
Sbjct: 286 YFRKDPR---PFFKFAKEIYPGQFQPSLCHKFIALSDK----EGKLLRNYTQNIDTLEQV 338
Query: 677 AGTKNLLEIHGSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCE 856
AG + +++ HGS C C YK C A+ G + V + PRC
Sbjct: 339 AGIQKIIQCHGSFATASCLIC-----KYKVD-CEAVRGDIFNQ--------VVPRCPRCP 384
Query: 857 EAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAAL 1009
+++P +V+FGENL + + DL +V+G+S V P AL
Sbjct: 385 ADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVAL 435
>ref|XP_002698901.1| PREDICTED: sirtuin (silent mating type information regulation 2
homolog) 1 (S. cerevisiae) [Bos taurus].
Length = 734
Score = 85.1 bits (209), Expect = 9e-17
Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 9/231 (3%)
Frame = +2
Query: 344 SSMADFRKHFAKAKHIVVISGAGVSAESGIPTFRGAGGYWRKWQAQ--DLATPQA----- 502
+++ D K + K I+V++GAGVS GIP FR G + + DL PQA
Sbjct: 226 NTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAIDFPDLPDPQAMFDIE 285
Query: 503 -FARNPSRVWEFYHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRK 676
F ++P F+ +E+ G+ P+ H IA + +G+ L TQNID L +
Sbjct: 286 YFRKDPR---PFFKFAKEIYPGQFQPSLCHKFIALSDK----EGKLLRNYTQNIDTLEQV 338
Query: 677 AGTKNLLEIHGSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCE 856
AG + +++ HGS C C YK C A+ G + V + PRC
Sbjct: 339 AGIQKIIQCHGSFATASCLIC-----KYKVD-CEAVRGDIFNQ--------VVPRCPRCP 384
Query: 857 EAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAAL 1009
+++P +V+FGENL + + DL +V+G+S V P AL
Sbjct: 385 ADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVAL 435
>ref|NP_001193598.1| NAD-dependent deacetylase sirtuin-3, mitochondrial [Bos taurus].
Length = 333
Score = 84.7 bits (208), Expect = 1e-16
Identities = 73/217 (33%), Positives = 102/217 (47%), Gaps = 11/217 (5%)
Frame = +2
Query: 389 IVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYHHR 547
+VV+ GAG+S SGIP FR G GY+ Q L P+A F +P F+
Sbjct: 73 VVVMVGAGISTPSGIPDFRSPGVGYYSILQQYKLPYPEAIFELSFFFHDPK---PFFTFA 129
Query: 548 REVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAGTKN--LLEIHGSLF 718
+++ G PNA H + LH +G L + TQNID L R +G + L+E HGSL
Sbjct: 130 KKLYPGNYRPNATHYFLRL----LHEKGLLLRLYTQNIDGLERASGIPDSKLVEAHGSLA 185
Query: 719 KTRCTSCGAVAENYKSPICPALSGKGAPEP-ETQDARIPVEKLPRCEEAGCGGLLRPHVV 895
CT C P P E A + +++PRC C G+ +P +V
Sbjct: 186 SATCTVCRR------------------PYPGEDFWADVMADRVPRCPV--CSGVTKPDIV 225
Query: 896 WFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
+FGE L L + + + DL L++GTS V P A
Sbjct: 226 FFGEPLPARFLLHL-ADFPMADLLLILGTSLEVEPFA 261
>ref|NP_001107003.1| NAD-dependent deacetylase sirtuin-2 [Bos taurus].
Length = 390
Score = 74.7 bits (182), Expect = 1e-13
Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 10/220 (4%)
Frame = +2
Query: 377 KAKHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEF 535
+ + ++ + GAG+S +GIP FR G + + L P+A F ++P F
Sbjct: 75 RCRRVICLVGAGISTSAGIPDFRSPNTGLYANLEKYRLPYPEAIFEISYFKKHPE---PF 131
Query: 536 YHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAGTK--NLLEIH 706
+ +E+ G+ P H I L +G L TQNID L R AG + +L+E H
Sbjct: 132 FALAKELYPGQFKPTICHYFIRL----LKEKGLLLRCYTQNIDTLERVAGLEPEDLVEAH 187
Query: 707 GSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRP 886
G+ + + C S G E S +I E P+CE+ C +++P
Sbjct: 188 GTFYTSHCISSGCRQEYSLS---------------WMKEKIFSEVTPKCEK--CQSVVKP 230
Query: 887 HVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
+V+FGENL + + DL +++GTS V P A
Sbjct: 231 DIVFFGENLPARFFSCMQSDFLKVDLLIIMGTSLQVQPFA 270
>ref|NP_001068685.1| NAD-dependent deacetylase sirtuin-7 [Bos taurus].
Length = 400
Score = 55.1 bits (131), Expect = 1e-07
Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 8/184 (4%)
Frame = +2
Query: 380 AKHIVVISGAGVSAESGIPTFRGAGGYW------RKWQAQDLATPQAFARNPSRVWEFYH 541
AK++VV +GAG+S + IP +RG G W R A DL+ +
Sbjct: 99 AKYLVVYTGAGISTAASIPDYRGPNGVWTLLQKGRSVSAADLSEAE-------------- 144
Query: 542 HRREVVQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAGTKN--LLEIHGSL 715
P H++I RLH Q V++QN D LH ++G + E+HG++
Sbjct: 145 ----------PTLTHMSI----TRLHEQKLVQHVVSQNCDGLHLRSGLPRSAMSELHGNM 190
Query: 716 FKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVV 895
+ CT+C E + + +T C + CGG LR +V
Sbjct: 191 YIEVCTACTPNREYVR--VFDVTERTALHRHQTGRT---------CHK--CGGQLRDTIV 237
Query: 896 WFGE 907
FGE
Sbjct: 238 HFGE 241
>ref|NP_001091553.1| NAD-dependent deacetylase sirtuin-6 [Bos taurus].
Length = 359
Score = 54.7 bits (130), Expect = 1e-07
Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 12/221 (5%)
Frame = +2
Query: 377 KAKHIVVISGAGVSAESGIPTFRGAGGYWRKWQAQDLATPQAFARNPSRVWEFYHHRREV 556
++ +V +GAG+S SGIP FRG G W T + P+ F
Sbjct: 43 QSSSVVFHTGAGISTASGIPDFRGPHGVW---------TMEERGLAPTFDTTF------- 86
Query: 557 VQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGSLFKTRC 730
+ P H+A+ Q E G +++QN+D LH ++G L E+HG++F C
Sbjct: 87 -ENAQPTKTHMALVQLER----VGLLHFLVSQNVDGLHVRSGFPRDKLAELHGNMFIEEC 141
Query: 731 TSC----------GAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLL 880
C G++ +C +G C G L
Sbjct: 142 VKCKMQYVRDTVVGSMGLKPTGRLCTVAKSRGL--------------------RACRGEL 181
Query: 881 RPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPA 1003
R ++ + ++L L D DL + +GTS + P+
Sbjct: 182 RDTILDWEDSLPDRDLTLADEASRNADLSITLGTSLQIRPS 222
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,072,278
Number of extensions: 1215697
Number of successful extensions: 4669
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4637
Number of HSP's successfully gapped: 8
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008813
(1015 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535891.2| PREDICTED: similar to NAD-dependent deacetylase... 460 e-129
Alignment gi|XP_534703.2| PREDICTED: similar to NAD-dependent deacetylase... 99 5e-21
Alignment gi|XP_863164.1| PREDICTED: similar to NAD-dependent deacetylase... 97 2e-20
Alignment gi|XP_851150.1| PREDICTED: similar to NAD-dependent deacetylase... 91 2e-18
Alignment gi|XP_855940.1| PREDICTED: similar to NAD-dependent deacetylase... 90 3e-18
Alignment gi|XP_855809.1| PREDICTED: similar to NAD-dependent deacetylase... 89 7e-18
Alignment gi|XP_848300.1| PREDICTED: similar to NAD-dependent deacetylase... 89 7e-18
Alignment gi|XP_855894.1| PREDICTED: similar to NAD-dependent deacetylase... 86 6e-17
Alignment gi|XP_546130.2| PREDICTED: similar to NAD-dependent deacetylase... 85 1e-16
Alignment gi|XP_855979.1| PREDICTED: similar to NAD-dependent deacetylase... 85 1e-16
>ref|XP_535891.2| PREDICTED: similar to NAD-dependent deacetylase sirtuin-5 (SIR2-like
protein 5) [Canis familiaris].
Length = 310
Score = 460 bits (1183), Expect = e-129
Identities = 223/261 (85%), Positives = 236/261 (90%)
Frame = +2
Query: 233 MPPLWGVPGRLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAG 412
M PL P RLL L GL SPAS TRICP MARPSS+MADFRK FAKAKHIV+ISGAG
Sbjct: 1 MQPLQIAPCRLLYGLYRGLKSPASTGTRICPAMARPSSNMADFRKLFAKAKHIVIISGAG 60
Query: 413 VSAESGIPTFRGAGGYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGRAPNAGHLA 592
VSAESG+PTFRGAGGYWRKWQAQDLATPQAFARNPS VWEFYH+RREV+ + PN GHLA
Sbjct: 61 VSAESGVPTFRGAGGYWRKWQAQDLATPQAFARNPSLVWEFYHYRREVMLSKEPNPGHLA 120
Query: 593 IAQCEARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGAVAENYKSPI 772
IA+CEARL QGRR++VITQNIDELHR+AGTKNLLEIHGSLFKTRCTSCG VAENYKSPI
Sbjct: 121 IAECEARLREQGRRVMVITQNIDELHRRAGTKNLLEIHGSLFKTRCTSCGIVAENYKSPI 180
Query: 773 CPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEEVDRELA 952
CPALSGKGAP+PE QDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDP ILEEVD+EL
Sbjct: 181 CPALSGKGAPDPEAQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDKELT 240
Query: 953 LCDLCLVVGTSSVVYPAALFA 1015
LCDLCLVVGTSSVVYPAA+FA
Sbjct: 241 LCDLCLVVGTSSVVYPAAMFA 261
>ref|XP_534703.2| PREDICTED: similar to NAD-dependent deacetylase sirtuin-4 (SIR2-like
protein 4) isoform 1 [Canis familiaris].
Length = 277
Score = 99.4 bits (246), Expect = 5e-21
Identities = 79/262 (30%), Positives = 128/262 (48%), Gaps = 15/262 (5%)
Frame = +2
Query: 260 RLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAGVSAESGIPT 439
R S+ G P+S P + + ++ +K ++V++GAG+S ESGIP
Sbjct: 20 RQYSRRSIGFFVPSSPPL--------DPEKVKELQRFVTLSKRLLVMTGAGISTESGIPD 71
Query: 440 FRGAG-GYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGR----APNAGHLAIAQC 604
+R G + + + + + P R + Y R V R PN H A++
Sbjct: 72 YRSEKVGLYARTKQKPIQHGDFLRSAPIR--QQYWARNFVGWPRFSSLQPNPAHWALSNW 129
Query: 605 EARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGA-----VAENYKSP 769
E RL G+ ++TQN+D LH KAG++ L E+HG + + C CGA V +
Sbjct: 130 E-RL---GKLYWLVTQNVDALHTKAGSQRLTELHGCMHRVLCLDCGAQIPRGVLQERFEA 185
Query: 770 ICPALSGKG---APEPET--QDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEE 934
+ P S + AP+ + + ++ ++P C A CGG L+P VV+FG+ ++P ++
Sbjct: 186 LNPTWSAEAHGLAPDGDVFLTEEQVQSFQVPSC--AQCGGPLKPDVVFFGDTVNPDRVDF 243
Query: 935 VDRELALCDLCLVVGTSSVVYP 1000
V R + D LVVG+S VYP
Sbjct: 244 VRRRVKEADSLLVVGSSLQVYP 265
>ref|XP_863164.1| PREDICTED: similar to NAD-dependent deacetylase sirtuin-4 (SIR2-like
protein 4) isoform 3 [Canis familiaris].
Length = 312
Score = 97.1 bits (240), Expect = 2e-20
Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 15/266 (5%)
Frame = +2
Query: 260 RLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAGVSAESGIPT 439
R S+ G P+S P + + ++ +K ++V++GAG+S ESGIP
Sbjct: 20 RQYSRRSIGFFVPSSPPL--------DPEKVKELQRFVTLSKRLLVMTGAGISTESGIPD 71
Query: 440 FRGAG-GYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGR----APNAGHLAIAQC 604
+R G + + + + + P R + Y R V R PN H A++
Sbjct: 72 YRSEKVGLYARTKQKPIQHGDFLRSAPIR--QQYWARNFVGWPRFSSLQPNPAHWALSNW 129
Query: 605 EARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGA-----VAENYKSP 769
E RL G+ ++TQN+D LH KAG++ L E+HG + + C CGA V +
Sbjct: 130 E-RL---GKLYWLVTQNVDALHTKAGSQRLTELHGCMHRVLCLDCGAQIPRGVLQERFEA 185
Query: 770 ICPALSGKG---APEPET--QDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEE 934
+ P S + AP+ + + ++ ++P C A CGG L+P VV+FG+ ++P ++
Sbjct: 186 LNPTWSAEAHGLAPDGDVFLTEEQVQSFQVPSC--AQCGGPLKPDVVFFGDTVNPDRVDF 243
Query: 935 VDRELALCDLCLVVGTSSVVYPAALF 1012
V R + D LVVG+S VY F
Sbjct: 244 VRRRVKEADSLLVVGSSLQVYSGYRF 269
>ref|XP_851150.1| PREDICTED: similar to NAD-dependent deacetylase sirtuin-4 (SIR2-like
protein 4) isoform 2 [Canis familiaris].
Length = 324
Score = 90.9 bits (224), Expect = 2e-18
Identities = 80/278 (28%), Positives = 129/278 (46%), Gaps = 27/278 (9%)
Frame = +2
Query: 260 RLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAGVSAESGIPT 439
R S+ G P+S P + + ++ +K ++V++GAG+S ESGIP
Sbjct: 20 RQYSRRSIGFFVPSSPPL--------DPEKVKELQRFVTLSKRLLVMTGAGISTESGIPD 71
Query: 440 FRGAG-GYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGR----APNAGHLAIAQC 604
+R G + + + + + P R + Y R V R PN H A++
Sbjct: 72 YRSEKVGLYARTKQKPIQHGDFLRSAPIR--QQYWARNFVGWPRFSSLQPNPAHWALSNW 129
Query: 605 EARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSL------------FKTRCTSCGA- 745
E RL G+ ++TQN+D LH KAG++ L E+HG + F+ C CGA
Sbjct: 130 E-RL---GKLYWLVTQNVDALHTKAGSQRLTELHGCMHRAHCSISLFFGFRVLCLDCGAQ 185
Query: 746 ----VAENYKSPICPALSGKG---APEPET--QDARIPVEKLPRCEEAGCGGLLRPHVVW 898
V + + P S + AP+ + + ++ ++P C A CGG L+P VV+
Sbjct: 186 IPRGVLQERFEALNPTWSAEAHGLAPDGDVFLTEEQVQSFQVPSC--AQCGGPLKPDVVF 243
Query: 899 FGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAALF 1012
FG+ ++P ++ V R + D LVVG+S VY F
Sbjct: 244 FGDTVNPDRVDFVRRRVKEADSLLVVGSSLQVYSGYRF 281
>ref|XP_855940.1| PREDICTED: similar to NAD-dependent deacetylase sirtuin-3,
mitochondrial precursor (SIR2-like protein 3) (hSIRT3)
isoform 6 [Canis familiaris].
Length = 374
Score = 90.1 bits (222), Expect = 3e-18
Identities = 74/218 (33%), Positives = 107/218 (49%), Gaps = 10/218 (4%)
Frame = +2
Query: 383 KHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYH 541
+ ++V+ GAG+S SGIP FR G G + Q DL P+A F+ NP F+
Sbjct: 111 QRVLVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAVFELAFFSHNPK---PFFT 167
Query: 542 HRREV-VQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGS 712
+E+ ++ PN H + LH +G L + TQNID L R AG L+E HGS
Sbjct: 168 LAKELYLKNYRPNIIHYFL----RLLHDKGLLLRLYTQNIDGLERVAGIPASKLVEAHGS 223
Query: 713 LFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHV 892
CT+ A E YK P + ++ ++K+PRC C G+L+P +
Sbjct: 224 FASATCTAPEAGPE-YK--------------PSFRKEKLFMDKIPRCPV--CTGVLKPDI 266
Query: 893 VWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
V+FGE L L V + + D+ L++GTS V P A
Sbjct: 267 VFFGETLPQRFLLHV-LDFPMADMLLILGTSLEVEPFA 303
>ref|XP_855809.1| PREDICTED: similar to NAD-dependent deacetylase sirtuin-3,
mitochondrial precursor (SIR2-like protein 3) (hSIRT3)
isoform 3 [Canis familiaris].
Length = 372
Score = 89.0 bits (219), Expect = 7e-18
Identities = 74/218 (33%), Positives = 105/218 (48%), Gaps = 10/218 (4%)
Frame = +2
Query: 383 KHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYH 541
+ ++V+ GAG+S SGIP FR G G + Q DL P+A F+ NP F+
Sbjct: 111 QRVLVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAVFELAFFSHNPK---PFFT 167
Query: 542 HRREV-VQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGS 712
+E+ ++ PN H + LH +G L + TQNID L R AG L+E HGS
Sbjct: 168 LAKELYLKNYRPNIIHYFL----RLLHDKGLLLRLYTQNIDGLERVAGIPASKLVEAHGS 223
Query: 713 LFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHV 892
CT C + SGK A + ++K+PRC C G+L+P +
Sbjct: 224 FASATCTVCRRPS-----------SGKDI------WADVSMDKIPRCPV--CTGVLKPDI 264
Query: 893 VWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
V+FGE L L V + + D+ L++GTS V P A
Sbjct: 265 VFFGETLPQRFLLHV-LDFPMADMLLILGTSLEVEPFA 301
>ref|XP_848300.1| PREDICTED: similar to NAD-dependent deacetylase sirtuin-3,
mitochondrial precursor (SIR2-like protein 3) (hSIRT3)
isoform 2 [Canis familiaris].
Length = 330
Score = 89.0 bits (219), Expect = 7e-18
Identities = 74/218 (33%), Positives = 105/218 (48%), Gaps = 10/218 (4%)
Frame = +2
Query: 383 KHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYH 541
+ ++V+ GAG+S SGIP FR G G + Q DL P+A F+ NP F+
Sbjct: 69 QRVLVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAVFELAFFSHNPK---PFFT 125
Query: 542 HRREV-VQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGS 712
+E+ ++ PN H + LH +G L + TQNID L R AG L+E HGS
Sbjct: 126 LAKELYLKNYRPNIIHYFL----RLLHDKGLLLRLYTQNIDGLERVAGIPASKLVEAHGS 181
Query: 713 LFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHV 892
CT C + SGK A + ++K+PRC C G+L+P +
Sbjct: 182 FASATCTVCRRPS-----------SGKDI------WADVSMDKIPRCPV--CTGVLKPDI 222
Query: 893 VWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
V+FGE L L V + + D+ L++GTS V P A
Sbjct: 223 VFFGETLPQRFLLHV-LDFPMADMLLILGTSLEVEPFA 259
>ref|XP_855894.1| PREDICTED: similar to NAD-dependent deacetylase sirtuin-3,
mitochondrial precursor (SIR2-like protein 3) (hSIRT3)
isoform 5 [Canis familiaris].
Length = 257
Score = 85.9 bits (211), Expect = 6e-17
Identities = 73/211 (34%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Frame = +2
Query: 404 GAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYHHRREV-V 559
GAG+S SGIP FR G G + Q DL P+A F+ NP F+ +E+ +
Sbjct: 3 GAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAVFELAFFSHNPK---PFFTLAKELYL 59
Query: 560 QGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGSLFKTRCT 733
+ PN H + LH +G L + TQNID L R AG L+E HGS CT
Sbjct: 60 KNYRPNIIHYFL----RLLHDKGLLLRLYTQNIDGLERVAGIPASKLVEAHGSFASATCT 115
Query: 734 SCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENL 913
C + SGK A + ++K+PRC C G+L+P +V+FGE L
Sbjct: 116 VCRRPS-----------SGKDI------WADVSMDKIPRCPV--CTGVLKPDIVFFGETL 156
Query: 914 DPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
L V + + D+ L++GTS V P A
Sbjct: 157 PQRFLLHV-LDFPMADMLLILGTSLEVEPFA 186
>ref|XP_546130.2| PREDICTED: similar to NAD-dependent deacetylase sirtuin-1 (hSIRT1)
(hSIR2) (SIR2-like protein 1) isoform 1 [Canis
familiaris].
Length = 745
Score = 85.1 bits (209), Expect = 1e-16
Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 9/231 (3%)
Frame = +2
Query: 344 SSMADFRKHFAKAKHIVVISGAGVSAESGIPTFRGAGGYWRKWQAQ--DLATPQA----- 502
+++ D K + K I+V++GAGVS GIP FR G + + DL PQA
Sbjct: 237 NTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAIDFPDLPDPQAMFDIE 296
Query: 503 -FARNPSRVWEFYHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRK 676
F ++P F+ +E+ G+ P+ H IA + +G+ L TQNID L +
Sbjct: 297 YFRKDPR---PFFKFAKEIYPGQFQPSLCHKFIALSDK----EGKLLRNYTQNIDTLEQV 349
Query: 677 AGTKNLLEIHGSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCE 856
AG + +++ HGS C C YK C A+ G + V + PRC
Sbjct: 350 AGIQRIIQCHGSFATASCLIC-----KYKVD-CEAVRGDIFNQ--------VVPRCPRCP 395
Query: 857 EAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAAL 1009
+++P +V+FGENL + + DL +V+G+S V P AL
Sbjct: 396 ADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVAL 446
>ref|XP_855979.1| PREDICTED: similar to NAD-dependent deacetylase sirtuin-3,
mitochondrial precursor (SIR2-like protein 3) (hSIRT3)
isoform 7 [Canis familiaris].
Length = 374
Score = 84.7 bits (208), Expect = 1e-16
Identities = 71/218 (32%), Positives = 104/218 (47%), Gaps = 10/218 (4%)
Frame = +2
Query: 383 KHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYH 541
+ ++V+ GAG+S SGIP FR G G + Q DL P+A F+ NP F+
Sbjct: 111 QRVLVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAVFELAFFSHNPK---PFFT 167
Query: 542 HRREV-VQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGS 712
+E+ ++ PN H + LH +G L + TQNID L R AG L+E HGS
Sbjct: 168 LAKELYLKNYRPNIIHYFL----RLLHDKGLLLRLYTQNIDGLERVAGIPASKLVEAHGS 223
Query: 713 LFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHV 892
CT+ E+ P ++ ++K+PRC C G+L+P +
Sbjct: 224 FASATCTAFLCKLESC---------------PNWLRSQNFMDKIPRCPV--CTGVLKPDI 266
Query: 893 VWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
V+FGE L L V + + D+ L++GTS V P A
Sbjct: 267 VFFGETLPQRFLLHV-LDFPMADMLLILGTSLEVEPFA 303
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,075,281
Number of extensions: 1125323
Number of successful extensions: 4908
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4851
Number of HSP's successfully gapped: 17
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008813
(1015 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098778.1| NAD-dependent deacetylase sirtuin-5 [Sus scr... 539 e-153
Alignment gi|NP_001107742.1| NAD-dependent ADP-ribosyltransferase sirtuin... 97 1e-20
Alignment gi|NP_001103527.1| NAD-dependent deacetylase sirtuin-3, mitocho... 96 3e-20
Alignment gi|NP_001139222.1| NAD-dependent deacetylase sirtuin-1 [Sus scr... 86 4e-17
Alignment gi|NP_001107743.1| NAD-dependent deacetylase sirtuin-2 [Sus scr... 74 1e-13
Alignment gi|NP_001107744.1| NAD-dependent deacetylase sirtuin-7 [Sus scr... 58 7e-09
Alignment gi|NP_001107745.1| NAD-dependent deacetylase sirtuin-6 [Sus scr... 54 2e-07
>ref|NP_001098778.1| NAD-dependent deacetylase sirtuin-5 [Sus scrofa].
Length = 310
Score = 539 bits (1388), Expect = e-153
Identities = 259/261 (99%), Positives = 260/261 (99%)
Frame = +2
Query: 233 MPPLWGVPGRLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAG 412
MPPLWGVPGRLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAG
Sbjct: 1 MPPLWGVPGRLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAG 60
Query: 413 VSAESGIPTFRGAGGYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGRAPNAGHLA 592
VSAESGIPTFRGAGGYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGRAPNAGHLA
Sbjct: 61 VSAESGIPTFRGAGGYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGRAPNAGHLA 120
Query: 593 IAQCEARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGAVAENYKSPI 772
IAQCEARLHGQGRRLVVITQNIDELHRKAGT+NLLEIHGSLFKTRCTSCGAVAENYKSPI
Sbjct: 121 IAQCEARLHGQGRRLVVITQNIDELHRKAGTRNLLEIHGSLFKTRCTSCGAVAENYKSPI 180
Query: 773 CPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEEVDRELA 952
CPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDP ILEEVDRELA
Sbjct: 181 CPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELA 240
Query: 953 LCDLCLVVGTSSVVYPAALFA 1015
LCDLCLVVGTSSVVYPAALFA
Sbjct: 241 LCDLCLVVGTSSVVYPAALFA 261
>ref|NP_001107742.1| NAD-dependent ADP-ribosyltransferase sirtuin-4 [Sus scrofa].
Length = 314
Score = 97.1 bits (240), Expect = 1e-20
Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 13/232 (5%)
Frame = +2
Query: 356 DFRKHFAKAKHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQAFARNP--SRV 526
+F++ +K ++V++GAG+S ESGIP +R G + + + + P R
Sbjct: 46 EFQRFITLSKRLLVMTGAGISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRY 105
Query: 527 WEFYHHRREVVQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAGTKNLLEIH 706
W PN H A++ E RL G+ ++TQN+D LH KAG++ L E+H
Sbjct: 106 WARNFVGWPQFSSHQPNPAHWALSNWE-RL---GKLYWLVTQNVDALHTKAGSQRLTELH 161
Query: 707 GSLFKTRCTSCG------AVAENYK--SPICPALSGKGAPEPET--QDARIPVEKLPRCE 856
G + + C CG + E ++ +P A + AP+ + + ++ ++P C
Sbjct: 162 GCMHRVLCLDCGEQTPRRVLQERFEVLNPTWSAEAHGLAPDGDVFLTEEQVQSFQVPSCS 221
Query: 857 EAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAALF 1012
CGG L+P VV+FG+ ++P ++ V + + D LVVG+S VY F
Sbjct: 222 R--CGGPLKPDVVFFGDTVNPNTVDFVHKRVKEADSLLVVGSSLQVYSGYKF 271
>ref|NP_001103527.1| NAD-dependent deacetylase sirtuin-3, mitochondrial [Sus scrofa].
Length = 332
Score = 95.9 bits (237), Expect = 3e-20
Identities = 76/219 (34%), Positives = 104/219 (47%), Gaps = 11/219 (5%)
Frame = +2
Query: 383 KHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYH 541
+ +VV+ GAG+S SGIP FR G GY+ Q+ DL P+A F NP F+
Sbjct: 71 RRVVVMVGAGISTPSGIPDFRSPGTGYYSTLQSYDLPYPEAIFELSFFFHNPK---PFFT 127
Query: 542 HRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGS 712
+E+ G PN H + LH +G L + TQNID L R +G L+E HGS
Sbjct: 128 FAKELYPGNYRPNTAHYFL----RLLHDKGLLLRLYTQNIDGLERASGIPASKLVEAHGS 183
Query: 713 LFKTRCTSCGAVAENYKSPICPALSGKGAPEP-ETQDARIPVEKLPRCEEAGCGGLLRPH 889
CT C P P E A + V+ +PRC C G+++P
Sbjct: 184 FASATCTVC------------------RRPFPGEDFWADVMVDSVPRCRV--CAGVVKPD 223
Query: 890 VVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
+V+FGE L P L + + + DL L++GTS V P A
Sbjct: 224 IVFFGEPLPPRFLLHL-ADFPVADLLLILGTSLEVEPFA 261
>ref|NP_001139222.1| NAD-dependent deacetylase sirtuin-1 [Sus scrofa].
Length = 742
Score = 85.5 bits (210), Expect = 4e-17
Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 9/231 (3%)
Frame = +2
Query: 344 SSMADFRKHFAKAKHIVVISGAGVSAESGIPTFRGAGGYWRKWQAQ--DLATPQA----- 502
+++ D K + K I+V++GAGVS GIP FR G + + DL PQA
Sbjct: 235 NTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIE 294
Query: 503 -FARNPSRVWEFYHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRK 676
F ++P F+ +E+ G+ P+ H IA + +G+ L TQNID L +
Sbjct: 295 YFRKDPR---PFFKFAKEIYPGQFQPSLCHKFIALSDK----EGKLLRNYTQNIDTLEQV 347
Query: 677 AGTKNLLEIHGSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCE 856
AG + +++ HGS C C YK C A+ G + V + PRC
Sbjct: 348 AGIQRIIQCHGSFATASCLIC-----KYKVD-CEAVRGDIFNQ--------VVPRCPRCP 393
Query: 857 EAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAAL 1009
+++P +V+FGENL + + DL +V+G+S V P AL
Sbjct: 394 ADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVAL 444
>ref|NP_001107743.1| NAD-dependent deacetylase sirtuin-2 [Sus scrofa].
Length = 391
Score = 73.9 bits (180), Expect = 1e-13
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 10/220 (4%)
Frame = +2
Query: 377 KAKHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEF 535
+ + ++ + GAG+S +GIP FR G + + L P+A F ++P F
Sbjct: 77 RCRRVICLVGAGISTSAGIPDFRSPSTGLYANLEKYRLPYPEAIFEIGYFKKHPE---PF 133
Query: 536 YHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAGTK--NLLEIH 706
+ +E+ G+ P H I L +G L TQNID L R AG + +L+E H
Sbjct: 134 FALAKELYPGQFKPTICHYFIRL----LKEKGLLLRCYTQNIDTLERVAGLEPEDLVEAH 189
Query: 707 GSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRP 886
G+ + + C S P+C G +I E P+CE+ C +++P
Sbjct: 190 GTFYTSHCIS----------PLCRQEYTLG-----WMKEKIFSEVTPKCEK--CQSVVKP 232
Query: 887 HVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
+V+FGENL + + DL +V+GTS V P A
Sbjct: 233 DIVFFGENLPARFFSCMQSDFLKVDLLIVMGTSLQVQPFA 272
>ref|NP_001107744.1| NAD-dependent deacetylase sirtuin-7 [Sus scrofa].
Length = 400
Score = 58.2 bits (139), Expect = 7e-09
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Frame = +2
Query: 380 AKHIVVISGAGVSAESGIPTFRGAGGYW------RKWQAQDLATPQAFARNPSRVWEFYH 541
AKH+VV +GAG+S + IP +RG G W R A DL+ +
Sbjct: 99 AKHLVVYTGAGISTAASIPDYRGPNGVWTLLQKGRSVSAADLSEAE-------------- 144
Query: 542 HRREVVQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAGTKN--LLEIHGSL 715
P H++I ARLH Q V++QN D LH ++G + E+HG++
Sbjct: 145 ----------PTLTHMSI----ARLHEQKLVQHVVSQNCDGLHLRSGLPRAAMSELHGNM 190
Query: 716 FKTRCTSC 739
+ CT+C
Sbjct: 191 YIEVCTAC 198
>ref|NP_001107745.1| NAD-dependent deacetylase sirtuin-6 [Sus scrofa].
Length = 328
Score = 53.5 bits (127), Expect = 2e-07
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +2
Query: 377 KAKHIVVISGAGVSAESGIPTFRGAGGYWRKWQAQDLATPQAFARNPSRVWEFYHHRREV 556
++ ++V +GAG+S SGIP FRG G W T + P F + R
Sbjct: 43 QSSNVVFHTGAGISTASGIPDFRGPHGVW---------TMEERGLAPKFDTTFENAR--- 90
Query: 557 VQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGSLFKTRC 730
P H+A+ Q E G +++QN+D LH ++G L E+HG++F C
Sbjct: 91 -----PTKTHMALVQLER----VGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEEC 141
Query: 731 TSC 739
C
Sbjct: 142 VKC 144
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,782,430
Number of extensions: 979671
Number of successful extensions: 3039
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3014
Number of HSP's successfully gapped: 7
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008813
(1015 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_849179.1| NAD-dependent deacetylase sirtuin-5 [Mus muscul... 462 e-130
Alignment gi|NP_001161163.1| NAD-dependent ADP-ribosyltransferase sirtuin... 94 1e-19
Alignment gi|NP_598521.1| NAD-dependent ADP-ribosyltransferase sirtuin-4 ... 94 1e-19
Alignment gi|NP_001153062.1| NAD-dependent deacetylase sirtuin-1 isoform ... 86 4e-17
Alignment gi|NP_001153061.1| NAD-dependent deacetylase sirtuin-1 isoform ... 86 4e-17
Alignment gi|NP_062786.1| NAD-dependent deacetylase sirtuin-1 isoform 1 [... 86 4e-17
Alignment gi|NP_001171275.1| NAD-dependent deacetylase sirtuin-3 isoform ... 84 2e-16
Alignment gi|NP_001120823.1| NAD-dependent deacetylase sirtuin-3 isoform ... 80 3e-15
Alignment gi|NP_071878.2| NAD-dependent deacetylase sirtuin-3 isoform 1 [... 80 3e-15
Alignment gi|NP_001116237.1| NAD-dependent deacetylase sirtuin-2 isoform ... 73 3e-13
>ref|NP_849179.1| NAD-dependent deacetylase sirtuin-5 [Mus musculus].
Length = 310
Score = 462 bits (1189), Expect = e-130
Identities = 221/261 (84%), Positives = 238/261 (91%)
Frame = +2
Query: 233 MPPLWGVPGRLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAG 412
M PL PGR +SQL C PAS ++IC TMARPSS+MADFRK FA AKHI +ISGAG
Sbjct: 1 MRPLLIAPGRFISQLCCRRKPPASPQSKICLTMARPSSNMADFRKCFANAKHIAIISGAG 60
Query: 413 VSAESGIPTFRGAGGYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGRAPNAGHLA 592
VSAESG+PTFRGAGGYWRKWQAQDLATPQAFARNPS+VWEFYH+RREV++ + PN GHLA
Sbjct: 61 VSAESGVPTFRGAGGYWRKWQAQDLATPQAFARNPSQVWEFYHYRREVMRSKEPNPGHLA 120
Query: 593 IAQCEARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGAVAENYKSPI 772
IAQCEARL QGRR+VVITQNIDELHRKAGTKNLLEIHG+LFKTRCTSCG VAENY+SPI
Sbjct: 121 IAQCEARLRDQGRRVVVITQNIDELHRKAGTKNLLEIHGTLFKTRCTSCGTVAENYRSPI 180
Query: 773 CPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEEVDRELA 952
CPAL+GKGAPEPETQDARIPV+KLPRCEEAGCGGLLRPHVVWFGENLDP ILEEVDRELA
Sbjct: 181 CPALAGKGAPEPETQDARIPVDKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELA 240
Query: 953 LCDLCLVVGTSSVVYPAALFA 1015
LCDLCLVVGTSSVVYPAA+FA
Sbjct: 241 LCDLCLVVGTSSVVYPAAMFA 261
>ref|NP_001161163.1| NAD-dependent ADP-ribosyltransferase sirtuin-4 [Mus musculus].
Length = 333
Score = 94.4 bits (233), Expect = 1e-19
Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 13/243 (5%)
Frame = +2
Query: 323 PTMARPSSSMADFRKHFAKAKHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQ 499
P+ + + ++ + +K ++V++GAG+S ESGIP +R G + + + +
Sbjct: 32 PSPPLDPEKIKELQRFISLSKKLLVMTGAGISTESGIPDYRSEKVGLYARTDRRPIQHID 91
Query: 500 AFARNP--SRVWEFYHHRREVVQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHR 673
P R W PN H A++ E RL G+ ++TQN+D LH
Sbjct: 92 FVRSAPVRQRYWARNFVGWPQFSSHQPNPAHWALSNWE-RL---GKLHWLVTQNVDALHS 147
Query: 674 KAGTKNLLEIHGSLFKTRCTSCG-----AVAENYKSPICPALSGKG---APEPET--QDA 823
KAG++ L E+HG + + C +CG V + + P+ S + AP+ + +
Sbjct: 148 KAGSQRLTELHGCMHRVLCLNCGEQTARRVLQERFQALNPSWSAEAQGVAPDGDVFLTEE 207
Query: 824 RIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPA 1003
++ ++P C+ CGG L+P VV+FG+ ++P ++ V R + D LVVG+S VY
Sbjct: 208 QVRSFQVPCCDR--CGGPLKPDVVFFGDTVNPDKVDFVHRRVKEADSLLVVGSSLQVYSG 265
Query: 1004 ALF 1012
F
Sbjct: 266 YRF 268
>ref|NP_598521.1| NAD-dependent ADP-ribosyltransferase sirtuin-4 [Mus musculus].
Length = 333
Score = 94.4 bits (233), Expect = 1e-19
Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 13/243 (5%)
Frame = +2
Query: 323 PTMARPSSSMADFRKHFAKAKHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQ 499
P+ + + ++ + +K ++V++GAG+S ESGIP +R G + + + +
Sbjct: 32 PSPPLDPEKIKELQRFISLSKKLLVMTGAGISTESGIPDYRSEKVGLYARTDRRPIQHID 91
Query: 500 AFARNP--SRVWEFYHHRREVVQGRAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHR 673
P R W PN H A++ E RL G+ ++TQN+D LH
Sbjct: 92 FVRSAPVRQRYWARNFVGWPQFSSHQPNPAHWALSNWE-RL---GKLHWLVTQNVDALHS 147
Query: 674 KAGTKNLLEIHGSLFKTRCTSCG-----AVAENYKSPICPALSGKG---APEPET--QDA 823
KAG++ L E+HG + + C +CG V + + P+ S + AP+ + +
Sbjct: 148 KAGSQRLTELHGCMHRVLCLNCGEQTARRVLQERFQALNPSWSAEAQGVAPDGDVFLTEE 207
Query: 824 RIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPA 1003
++ ++P C+ CGG L+P VV+FG+ ++P ++ V R + D LVVG+S VY
Sbjct: 208 QVRSFQVPCCDR--CGGPLKPDVVFFGDTVNPDKVDFVHRRVKEADSLLVVGSSLQVYSG 265
Query: 1004 ALF 1012
F
Sbjct: 266 YRF 268
>ref|NP_001153062.1| NAD-dependent deacetylase sirtuin-1 isoform 3 [Mus musculus].
Length = 576
Score = 86.3 bits (212), Expect = 4e-17
Identities = 71/231 (30%), Positives = 107/231 (46%), Gaps = 9/231 (3%)
Frame = +2
Query: 344 SSMADFRKHFAKAKHIVVISGAGVSAESGIPTFRGAGGYWRKWQAQ--DLATPQA----- 502
+++ D K + K I+V++GAGVS GIP FR G + + DL PQA
Sbjct: 72 NTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIE 131
Query: 503 -FARNPSRVWEFYHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRK 676
F ++P F+ +E+ G+ P+ H IA + +G+ L TQNID L +
Sbjct: 132 YFRKDPR---PFFKFAKEIYPGQFQPSLCHKFIALSDK----EGKLLRNYTQNIDTLEQV 184
Query: 677 AGTKNLLEIHGSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCE 856
AG + +L+ HGS C C YK C A+ G + V + PRC
Sbjct: 185 AGIQRILQCHGSFATASCLIC-----KYKVD-CEAVRGDIFNQ--------VVPRCPRCP 230
Query: 857 EAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAAL 1009
+++P +V+FGENL + + DL +V+G+S V P AL
Sbjct: 231 ADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVAL 281
>ref|NP_001153061.1| NAD-dependent deacetylase sirtuin-1 isoform 2 [Mus musculus].
Length = 698
Score = 86.3 bits (212), Expect = 4e-17
Identities = 71/231 (30%), Positives = 107/231 (46%), Gaps = 9/231 (3%)
Frame = +2
Query: 344 SSMADFRKHFAKAKHIVVISGAGVSAESGIPTFRGAGGYWRKWQAQ--DLATPQA----- 502
+++ D K + K I+V++GAGVS GIP FR G + + DL PQA
Sbjct: 194 NTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIE 253
Query: 503 -FARNPSRVWEFYHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRK 676
F ++P F+ +E+ G+ P+ H IA + +G+ L TQNID L +
Sbjct: 254 YFRKDPR---PFFKFAKEIYPGQFQPSLCHKFIALSDK----EGKLLRNYTQNIDTLEQV 306
Query: 677 AGTKNLLEIHGSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCE 856
AG + +L+ HGS C C YK C A+ G + V + PRC
Sbjct: 307 AGIQRILQCHGSFATASCLIC-----KYKVD-CEAVRGDIFNQ--------VVPRCPRCP 352
Query: 857 EAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAAL 1009
+++P +V+FGENL + + DL +V+G+S V P AL
Sbjct: 353 ADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVAL 403
>ref|NP_062786.1| NAD-dependent deacetylase sirtuin-1 isoform 1 [Mus musculus].
Length = 737
Score = 86.3 bits (212), Expect = 4e-17
Identities = 71/231 (30%), Positives = 107/231 (46%), Gaps = 9/231 (3%)
Frame = +2
Query: 344 SSMADFRKHFAKAKHIVVISGAGVSAESGIPTFRGAGGYWRKWQAQ--DLATPQA----- 502
+++ D K + K I+V++GAGVS GIP FR G + + DL PQA
Sbjct: 233 NTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIE 292
Query: 503 -FARNPSRVWEFYHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRK 676
F ++P F+ +E+ G+ P+ H IA + +G+ L TQNID L +
Sbjct: 293 YFRKDPR---PFFKFAKEIYPGQFQPSLCHKFIALSDK----EGKLLRNYTQNIDTLEQV 345
Query: 677 AGTKNLLEIHGSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCE 856
AG + +L+ HGS C C YK C A+ G + V + PRC
Sbjct: 346 AGIQRILQCHGSFATASCLIC-----KYKVD-CEAVRGDIFNQ--------VVPRCPRCP 391
Query: 857 EAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAAL 1009
+++P +V+FGENL + + DL +V+G+S V P AL
Sbjct: 392 ADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVAL 442
>ref|NP_001171275.1| NAD-dependent deacetylase sirtuin-3 isoform 3 [Mus musculus].
Length = 334
Score = 83.6 bits (205), Expect = 2e-16
Identities = 70/216 (32%), Positives = 100/216 (46%), Gaps = 10/216 (4%)
Frame = +2
Query: 389 IVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYHHR 547
+VV+ GAG+S SGIP FR G G + Q D+ P+A F NP F+
Sbjct: 75 VVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDIPYPEAIFELGFFFHNPK---PFFMLA 131
Query: 548 REVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGSLF 718
+E+ G PN H + LH + L + TQNID L R +G L+E HG+
Sbjct: 132 KELYPGHYRPNVTHYFL----RLLHDKELLLRLYTQNIDGLERASGIPASKLVEAHGTFV 187
Query: 719 KTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVW 898
CT C + + E A + +++PRC C G+++P +V+
Sbjct: 188 TATCTVC-----------------RRSFPGEDIWADVMADRVPRCPV--CTGVVKPDIVF 228
Query: 899 FGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
FGE L L + + AL DL L++GTS V P A
Sbjct: 229 FGEQLPARFLLHM-ADFALADLLLILGTSLEVEPFA 263
>ref|NP_001120823.1| NAD-dependent deacetylase sirtuin-3 isoform 1 [Mus musculus].
Length = 257
Score = 79.7 bits (195), Expect = 3e-15
Identities = 68/211 (32%), Positives = 96/211 (45%), Gaps = 10/211 (4%)
Frame = +2
Query: 404 GAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYHHRREVVQ 562
GAG+S SGIP FR G G + Q D+ P+A F NP F+ +E+
Sbjct: 3 GAGISTPSGIPDFRSPGSGLYSNLQQYDIPYPEAIFELGFFFHNPK---PFFMLAKELYP 59
Query: 563 GR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGSLFKTRCT 733
G PN H + LH + L + TQNID L R +G L+E HG+ CT
Sbjct: 60 GHYRPNVTHYFL----RLLHDKELLLRLYTQNIDGLERASGIPASKLVEAHGTFVTATCT 115
Query: 734 SCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENL 913
C + + E A + +++PRC C G+++P +V+FGE L
Sbjct: 116 VC-----------------RRSFPGEDIWADVMADRVPRCPV--CTGVVKPDIVFFGEQL 156
Query: 914 DPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
L + + AL DL L++GTS V P A
Sbjct: 157 PARFLLHM-ADFALADLLLILGTSLEVEPFA 186
>ref|NP_071878.2| NAD-dependent deacetylase sirtuin-3 isoform 1 [Mus musculus].
Length = 257
Score = 79.7 bits (195), Expect = 3e-15
Identities = 68/211 (32%), Positives = 96/211 (45%), Gaps = 10/211 (4%)
Frame = +2
Query: 404 GAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYHHRREVVQ 562
GAG+S SGIP FR G G + Q D+ P+A F NP F+ +E+
Sbjct: 3 GAGISTPSGIPDFRSPGSGLYSNLQQYDIPYPEAIFELGFFFHNPK---PFFMLAKELYP 59
Query: 563 GR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGSLFKTRCT 733
G PN H + LH + L + TQNID L R +G L+E HG+ CT
Sbjct: 60 GHYRPNVTHYFL----RLLHDKELLLRLYTQNIDGLERASGIPASKLVEAHGTFVTATCT 115
Query: 734 SCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENL 913
C + + E A + +++PRC C G+++P +V+FGE L
Sbjct: 116 VC-----------------RRSFPGEDIWADVMADRVPRCPV--CTGVVKPDIVFFGEQL 156
Query: 914 DPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
L + + AL DL L++GTS V P A
Sbjct: 157 PARFLLHM-ADFALADLLLILGTSLEVEPFA 186
>ref|NP_001116237.1| NAD-dependent deacetylase sirtuin-2 isoform 2 [Mus musculus].
Length = 352
Score = 73.2 bits (178), Expect = 3e-13
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 10/220 (4%)
Frame = +2
Query: 377 KAKHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEF 535
+ + ++ + GAG+S +GIP FR G + + L P+A F ++P F
Sbjct: 38 RCRKVICLVGAGISTSAGIPDFRSPSTGLYANLEKYHLPYPEAIFEISYFKKHPE---PF 94
Query: 536 YHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAGTK--NLLEIH 706
+ +E+ G+ P H I L +G L TQNID L R AG + +L+E H
Sbjct: 95 FALAKELYPGQFKPTICHYFIRL----LKEKGLLLRCYTQNIDTLERVAGLEPQDLVEAH 150
Query: 707 GSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRP 886
G+ + + C + E +I E PRCE+ C +++P
Sbjct: 151 GTFYTSHCVNTSCRKEYTMG---------------WMKEKIFSEATPRCEQ--CQSVVKP 193
Query: 887 HVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
+V+FGENL + + + DL +++GTS V P A
Sbjct: 194 DIVFFGENLPSRFFSCMQSDFSKVDLLIIMGTSLQVQPFA 233
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,212,561
Number of extensions: 910383
Number of successful extensions: 3713
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3670
Number of HSP's successfully gapped: 15
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008813
(1015 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112534.1| NAD-dependent deacetylase sirtuin-5 isoform 2 [... 459 e-129
Alignment gi|NP_036373.1| NAD-dependent deacetylase sirtuin-5 isoform 1 [... 459 e-129
Alignment gi|NP_001180196.1| NAD-dependent deacetylase sirtuin-5 isoform ... 417 e-117
Alignment gi|NP_001229756.1| NAD-dependent deacetylase sirtuin-5 isoform ... 282 3e-76
Alignment gi|NP_036372.1| NAD-dependent ADP-ribosyltransferase sirtuin-4 ... 97 3e-20
Alignment gi|NP_036370.2| NAD-dependent deacetylase sirtuin-1 isoform a [... 86 7e-17
Alignment gi|NP_036371.1| NAD-dependent deacetylase sirtuin-3, mitochondr... 86 7e-17
Alignment gi|NP_001017524.1| NAD-dependent deacetylase sirtuin-3, mitocho... 81 1e-15
Alignment gi|NP_085096.1| NAD-dependent deacetylase sirtuin-2 isoform 2 [... 73 5e-13
Alignment gi|NP_036369.2| NAD-dependent deacetylase sirtuin-2 isoform 1 [... 73 5e-13
>ref|NP_112534.1| NAD-dependent deacetylase sirtuin-5 isoform 2 [Homo sapiens].
Length = 299
Score = 459 bits (1182), Expect = e-129
Identities = 224/261 (85%), Positives = 234/261 (89%)
Frame = +2
Query: 233 MPPLWGVPGRLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAG 412
M PL VP RL+SQL CGL PAS +IC MARPSSSMADFRK FAKAKHIV+ISGAG
Sbjct: 1 MRPLQIVPSRLISQLYCGLKPPASTRNQICLKMARPSSSMADFRKFFAKAKHIVIISGAG 60
Query: 413 VSAESGIPTFRGAGGYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGRAPNAGHLA 592
VSAESG+PTFRGAGGYWRKWQAQDLATP AFA NPSRVWEFYH+RREV+ + PNAGH A
Sbjct: 61 VSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRA 120
Query: 593 IAQCEARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGAVAENYKSPI 772
IA+CE RL QGRR+VVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCG VAENYKSPI
Sbjct: 121 IAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPI 180
Query: 773 CPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEEVDRELA 952
CPALSGKGAPEP TQDA IPVEKLPRCEEAGCGGLLRPHVVWFGENLDP ILEEVDRELA
Sbjct: 181 CPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELA 240
Query: 953 LCDLCLVVGTSSVVYPAALFA 1015
CDLCLVVGTSSVVYPAA+FA
Sbjct: 241 HCDLCLVVGTSSVVYPAAMFA 261
>ref|NP_036373.1| NAD-dependent deacetylase sirtuin-5 isoform 1 [Homo sapiens].
Length = 310
Score = 459 bits (1182), Expect = e-129
Identities = 224/261 (85%), Positives = 234/261 (89%)
Frame = +2
Query: 233 MPPLWGVPGRLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAG 412
M PL VP RL+SQL CGL PAS +IC MARPSSSMADFRK FAKAKHIV+ISGAG
Sbjct: 1 MRPLQIVPSRLISQLYCGLKPPASTRNQICLKMARPSSSMADFRKFFAKAKHIVIISGAG 60
Query: 413 VSAESGIPTFRGAGGYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGRAPNAGHLA 592
VSAESG+PTFRGAGGYWRKWQAQDLATP AFA NPSRVWEFYH+RREV+ + PNAGH A
Sbjct: 61 VSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRA 120
Query: 593 IAQCEARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGAVAENYKSPI 772
IA+CE RL QGRR+VVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCG VAENYKSPI
Sbjct: 121 IAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPI 180
Query: 773 CPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEEVDRELA 952
CPALSGKGAPEP TQDA IPVEKLPRCEEAGCGGLLRPHVVWFGENLDP ILEEVDRELA
Sbjct: 181 CPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELA 240
Query: 953 LCDLCLVVGTSSVVYPAALFA 1015
CDLCLVVGTSSVVYPAA+FA
Sbjct: 241 HCDLCLVVGTSSVVYPAAMFA 261
>ref|NP_001180196.1| NAD-dependent deacetylase sirtuin-5 isoform 3 [Homo sapiens].
Length = 292
Score = 417 bits (1072), Expect = e-117
Identities = 208/261 (79%), Positives = 218/261 (83%)
Frame = +2
Query: 233 MPPLWGVPGRLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAG 412
M PL VP RL+SQL CGL PAS +IC MARPSSSMADFRK FAKAKHIV+ISGAG
Sbjct: 1 MRPLQIVPSRLISQLYCGLKPPASTRNQICLKMARPSSSMADFRKFFAKAKHIVIISGAG 60
Query: 413 VSAESGIPTFRGAGGYWRKWQAQDLATPQAFARNPSRVWEFYHHRREVVQGRAPNAGHLA 592
VSAESG+PTFRGAGGYWRKWQAQDLATP AFA NPSRVWEFYH+RREV+ + PNAGH A
Sbjct: 61 VSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRA 120
Query: 593 IAQCEARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGAVAENYKSPI 772
IA+CE RL QGRR+VVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCG VAENYKSPI
Sbjct: 121 IAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPI 180
Query: 773 CPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEEVDRELA 952
CPALSGKG CEEAGCGGLLRPHVVWFGENLDP ILEEVDRELA
Sbjct: 181 CPALSGKG------------------CEEAGCGGLLRPHVVWFGENLDPAILEEVDRELA 222
Query: 953 LCDLCLVVGTSSVVYPAALFA 1015
CDLCLVVGTSSVVYPAA+FA
Sbjct: 223 HCDLCLVVGTSSVVYPAAMFA 243
>ref|NP_001229756.1| NAD-dependent deacetylase sirtuin-5 isoform 4 [Homo sapiens].
Length = 202
Score = 282 bits (722), Expect = 3e-76
Identities = 136/150 (90%), Positives = 140/150 (93%)
Frame = +2
Query: 566 RAPNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGA 745
+ PNAGH AIA+CE RL QGRR+VVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCG
Sbjct: 4 KEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGV 63
Query: 746 VAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGI 925
VAENYKSPICPALSGKGAPEP TQDA IPVEKLPRCEEAGCGGLLRPHVVWFGENLDP I
Sbjct: 64 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 123
Query: 926 LEEVDRELALCDLCLVVGTSSVVYPAALFA 1015
LEEVDRELA CDLCLVVGTSSVVYPAA+FA
Sbjct: 124 LEEVDRELAHCDLCLVVGTSSVVYPAAMFA 153
>ref|NP_036372.1| NAD-dependent ADP-ribosyltransferase sirtuin-4 [Homo sapiens].
Length = 314
Score = 96.7 bits (239), Expect = 3e-20
Identities = 73/266 (27%), Positives = 124/266 (46%), Gaps = 13/266 (4%)
Frame = +2
Query: 254 PGRLLSQLRCGLTSPASAPTRICPTMARPSSSMADFRKHFAKAKHIVVISGAGVSAESGI 433
P + S+ GL PAS P + + ++ +K ++V++GAG+S ESGI
Sbjct: 20 PSQPCSKASIGLFVPASPPL--------DPEKVKELQRFITLSKRLLVMTGAGISTESGI 71
Query: 434 PTFRGAG-GYWRKWQAQDLATPQAFARNP--SRVWEFYHHRREVVQGRAPNAGHLAIAQC 604
P +R G + + + + P R W PN H A++
Sbjct: 72 PDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQFSSHQPNPAHWALSTW 131
Query: 605 EARLHGQGRRLVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSC------GAVAENYK- 763
E G+ ++TQN+D LH KAG++ L E+HG + + C C G + E ++
Sbjct: 132 EKL----GKLYWLVTQNVDALHTKAGSRRLTELHGCMDRVLCLDCGEQTPRGVLQERFQV 187
Query: 764 -SPICPALSGKGAPEPET--QDARIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPGILEE 934
+P A + AP+ + + ++ ++P C + CGG L+P VV+FG+ ++P ++
Sbjct: 188 LNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQ--CGGHLKPDVVFFGDTVNPDKVDF 245
Query: 935 VDRELALCDLCLVVGTSSVVYPAALF 1012
V + + D LVVG+S VY F
Sbjct: 246 VHKRVKEADSLLVVGSSLQVYSGYRF 271
>ref|NP_036370.2| NAD-dependent deacetylase sirtuin-1 isoform a [Homo sapiens].
Length = 747
Score = 85.5 bits (210), Expect = 7e-17
Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 9/231 (3%)
Frame = +2
Query: 344 SSMADFRKHFAKAKHIVVISGAGVSAESGIPTFRGAGGYWRKWQAQ--DLATPQA----- 502
+++ D K + K I+V++GAGVS GIP FR G + + DL PQA
Sbjct: 241 NTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIE 300
Query: 503 -FARNPSRVWEFYHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRK 676
F ++P F+ +E+ G+ P+ H IA + +G+ L TQNID L +
Sbjct: 301 YFRKDPR---PFFKFAKEIYPGQFQPSLCHKFIALSDK----EGKLLRNYTQNIDTLEQV 353
Query: 677 AGTKNLLEIHGSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCE 856
AG + +++ HGS C C YK C A+ G + V + PRC
Sbjct: 354 AGIQRIIQCHGSFATASCLIC-----KYKVD-CEAVRGDIFNQ--------VVPRCPRCP 399
Query: 857 EAGCGGLLRPHVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAAL 1009
+++P +V+FGENL + + DL +V+G+S V P AL
Sbjct: 400 ADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVAL 450
>ref|NP_036371.1| NAD-dependent deacetylase sirtuin-3, mitochondrial isoform a [Homo
sapiens].
Length = 399
Score = 85.5 bits (210), Expect = 7e-17
Identities = 73/219 (33%), Positives = 101/219 (46%), Gaps = 11/219 (5%)
Frame = +2
Query: 383 KHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYH 541
+ +VV+ GAG+S SGIP FR G G + Q DL P+A F NP F+
Sbjct: 138 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPK---PFFT 194
Query: 542 HRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGS 712
+E+ G PN H + LH +G L + TQNID L R +G L+E HG+
Sbjct: 195 LAKELYPGNYKPNVTHYFL----RLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGT 250
Query: 713 LFKTRCTSCGAVAENYKSPICPALSGKGAPEP-ETQDARIPVEKLPRCEEAGCGGLLRPH 889
CT C P P E A + +++PRC C G+++P
Sbjct: 251 FASATCTVC------------------QRPFPGEDIRADVMADRVPRCPV--CTGVVKPD 290
Query: 890 VVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
+V+FGE L L V + + DL L++GTS V P A
Sbjct: 291 IVFFGEPLPQRFLLHV-VDFPMADLLLILGTSLEVEPFA 328
>ref|NP_001017524.1| NAD-dependent deacetylase sirtuin-3, mitochondrial isoform b [Homo
sapiens].
Length = 257
Score = 81.3 bits (199), Expect = 1e-15
Identities = 71/212 (33%), Positives = 96/212 (45%), Gaps = 11/212 (5%)
Frame = +2
Query: 404 GAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEFYHHRREVVQ 562
GAG+S SGIP FR G G + Q DL P+A F NP F+ +E+
Sbjct: 3 GAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPK---PFFTLAKELYP 59
Query: 563 GR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAG--TKNLLEIHGSLFKTRCT 733
G PN H + LH +G L + TQNID L R +G L+E HG+ CT
Sbjct: 60 GNYKPNVTHYFL----RLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCT 115
Query: 734 SCGAVAENYKSPICPALSGKGAPEP-ETQDARIPVEKLPRCEEAGCGGLLRPHVVWFGEN 910
C P P E A + +++PRC C G+++P +V+FGE
Sbjct: 116 VC------------------QRPFPGEDIRADVMADRVPRCPV--CTGVVKPDIVFFGEP 155
Query: 911 LDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
L L V + + DL L++GTS V P A
Sbjct: 156 LPQRFLLHV-VDFPMADLLLILGTSLEVEPFA 186
>ref|NP_085096.1| NAD-dependent deacetylase sirtuin-2 isoform 2 [Homo sapiens].
Length = 352
Score = 72.8 bits (177), Expect = 5e-13
Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 10/220 (4%)
Frame = +2
Query: 377 KAKHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEF 535
+ + ++ + GAG+S +GIP FR G + + L P+A F ++P F
Sbjct: 38 RCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPE---PF 94
Query: 536 YHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAGTK--NLLEIH 706
+ +E+ G+ P H + L +G L TQNID L R AG + +L+E H
Sbjct: 95 FALAKELYPGQFKPTICHYFMRL----LKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAH 150
Query: 707 GSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRP 886
G+ + + C S ++ P+ +I E P+CE+ C L++P
Sbjct: 151 GTFYTSHCVSASC---RHEYPL------------SWMKEKIFSEVTPKCED--CQSLVKP 193
Query: 887 HVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
+V+FGE+L + + DL LV+GTS V P A
Sbjct: 194 DIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFA 233
>ref|NP_036369.2| NAD-dependent deacetylase sirtuin-2 isoform 1 [Homo sapiens].
Length = 389
Score = 72.8 bits (177), Expect = 5e-13
Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 10/220 (4%)
Frame = +2
Query: 377 KAKHIVVISGAGVSAESGIPTFRGAG-GYWRKWQAQDLATPQA------FARNPSRVWEF 535
+ + ++ + GAG+S +GIP FR G + + L P+A F ++P F
Sbjct: 75 RCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPE---PF 131
Query: 536 YHHRREVVQGR-APNAGHLAIAQCEARLHGQGRRLVVITQNIDELHRKAGTK--NLLEIH 706
+ +E+ G+ P H + L +G L TQNID L R AG + +L+E H
Sbjct: 132 FALAKELYPGQFKPTICHYFMRL----LKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAH 187
Query: 707 GSLFKTRCTSCGAVAENYKSPICPALSGKGAPEPETQDARIPVEKLPRCEEAGCGGLLRP 886
G+ + + C S ++ P+ +I E P+CE+ C L++P
Sbjct: 188 GTFYTSHCVSASC---RHEYPL------------SWMKEKIFSEVTPKCED--CQSLVKP 230
Query: 887 HVVWFGENLDPGILEEVDRELALCDLCLVVGTSSVVYPAA 1006
+V+FGE+L + + DL LV+GTS V P A
Sbjct: 231 DIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFA 270
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,242,030
Number of extensions: 1092595
Number of successful extensions: 4636
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4597
Number of HSP's successfully gapped: 15
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008813
(1015 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 458 e-126
>Sscrofa_Chr07
|| Length = 134764511
Score = 458 bits (231), Expect = e-126
Identities = 231/231 (100%)
Strand = Plus / Minus
Query: 479 caggacctggccacccctcaggcctttgcccgaaacccgtcccgggtgtgggagttctac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10327954 caggacctggccacccctcaggcctttgcccgaaacccgtcccgggtgtgggagttctac 10327895
Query: 539 caccaccggcgggaggtggtgcagggcagggcgcccaacgccgggcacctggccatcgcc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10327894 caccaccggcgggaggtggtgcagggcagggcgcccaacgccgggcacctggccatcgcc 10327835
Query: 599 cagtgtgaggcccggctgcacgggcagggccgccggctcgtggtcatcacccagaacatc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10327834 cagtgtgaggcccggctgcacgggcagggccgccggctcgtggtcatcacccagaacatc 10327775
Query: 659 gacgagctgcaccgcaaggctggcaccaagaaccttctggaaatccatggt 709
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10327774 gacgagctgcaccgcaaggctggcaccaagaaccttctggaaatccatggt 10327724
Score = 268 bits (135), Expect = 5e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 348 gtatggccgactttcggaagcattttgcaaaagccaagcacatagttgtcatttcggggg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10330506 gtatggccgactttcggaagcattttgcaaaagccaagcacatagttgtcatttcggggg 10330447
Query: 408 ctggtgttagtgccgagagtgggattccgaccttcagaggagcaggaggttattggagaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10330446 ctggtgttagtgccgagagtgggattccgaccttcagaggagcaggaggttattggagaa 10330387
Query: 468 aatggcaagctcagg 482
|||||||||||||||
Sbjct: 10330386 aatggcaagctcagg 10330372
Score = 220 bits (111), Expect = 1e-54
Identities = 123/127 (96%)
Strand = Plus / Plus
Query: 849 ggtgtgaagaggcgggatgcgggggcctgctgcgacctcacgtcgtgtggtttggagaga 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10361015 ggtgtgaagaggcgggatgcgggggcctgctgcgacctcacgtcgtgtggtttggagaga 10361074
Query: 909 acctggaccccggcatcctggaagaagttgacagagagctggccctctgtgacttgtgtc 968
|||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 10361075 acctggaccctgccatcctggaggaggttgacagagagctggccctctgtgacttgtgtc 10361134
Query: 969 tagtggt 975
|||||||
Sbjct: 10361135 tagtggt 10361141
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,545,253
Number of extensions: 119
Number of successful extensions: 119
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 3
Length of query: 1015
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 994
Effective length of database: 2,808,413,156
Effective search space: 2791562677064
Effective search space used: 2791562677064
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)