Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008818
(918 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033179.1| cytochrome c1, heme protein, mitochondrial [... 415 e-116
>ref|NP_001033179.1| cytochrome c1, heme protein, mitochondrial [Bos taurus].
Length = 325
Score = 415 bits (1067), Expect = e-116
Identities = 206/282 (73%), Positives = 210/282 (74%)
Frame = +3
Query: 72 LRGAVLXXXXXXXXXXXXXXLLCGPRPGQLPLRTPQAXXXXXXXXXXXXXXVIXXXXXXX 251
LRGA++ LLCG RPGQLPLRTPQA VI
Sbjct: 8 LRGAMVGPRGAGLPGARARGLLCGARPGQLPLRTPQAVSLSSKSGLSRGRKVILSALGML 67
Query: 252 XXXXXXXXXXXXXXXXXTDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 431
+DLELH PSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM
Sbjct: 68 AAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 127
Query: 432 DYVAYRHLVGVCYTXXXXXXXXXXXXXQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 611
DYVAYRHLVGVCYT QDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA
Sbjct: 128 DYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 187
Query: 612 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP 791
ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAI MAPP
Sbjct: 188 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPP 247
Query: 792 IYNEVLEFDDGTPATMSQVTKDVCTFLRWASGPETDHPKRMG 917
IYNEVLEFDDGTPATMSQV KDVCTFLRWA+ PE DH KRMG
Sbjct: 248 IYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMG 289
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,360,597
Number of extensions: 990997
Number of successful extensions: 5039
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5013
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008818
(918 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532351.2| PREDICTED: similar to cytochrome c-1 isoform 1 ... 407 e-114
Alignment gi|XP_857578.1| PREDICTED: similar to cytochrome c-1 isoform 3 ... 399 e-111
Alignment gi|XP_857616.1| PREDICTED: similar to cytochrome c-1 isoform 4 ... 360 1e-99
>ref|XP_532351.2| PREDICTED: similar to cytochrome c-1 isoform 1 [Canis familiaris].
Length = 325
Score = 407 bits (1046), Expect = e-114
Identities = 204/282 (72%), Positives = 207/282 (73%)
Frame = +3
Query: 72 LRGAVLXXXXXXXXXXXXXXLLCGPRPGQLPLRTPQAXXXXXXXXXXXXXXVIXXXXXXX 251
LRGAVL LLCG R GQLPLRT QA V+
Sbjct: 8 LRGAVLGPRGAGLPGAGARGLLCGARLGQLPLRTSQAVPLSSKAGPSRGRKVMLSALGML 67
Query: 252 XXXXXXXXXXXXXXXXXTDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 431
+DLELH PSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM
Sbjct: 68 AAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 127
Query: 432 DYVAYRHLVGVCYTXXXXXXXXXXXXXQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 611
DYVAYRHLVGVCYT QDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA
Sbjct: 128 DYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 187
Query: 612 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP 791
ANNGALPPDLSYI RARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAI MAPP
Sbjct: 188 ANNGALPPDLSYITRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPP 247
Query: 792 IYNEVLEFDDGTPATMSQVTKDVCTFLRWASGPETDHPKRMG 917
IY+EVLEFDDGTPATMSQV KDVCTFLRWAS PE DH KRMG
Sbjct: 248 IYDEVLEFDDGTPATMSQVAKDVCTFLRWASEPEHDHRKRMG 289
>ref|XP_857578.1| PREDICTED: similar to cytochrome c-1 isoform 3 [Canis familiaris].
Length = 335
Score = 399 bits (1025), Expect = e-111
Identities = 204/292 (69%), Positives = 207/292 (70%), Gaps = 10/292 (3%)
Frame = +3
Query: 72 LRGAVLXXXXXXXXXXXXXXLLCGPRPGQLPLRTPQAXXXXXXXXXXXXXXVIXXXXXXX 251
LRGAVL LLCG R GQLPLRT QA V+
Sbjct: 8 LRGAVLGPRGAGLPGAGARGLLCGARLGQLPLRTSQAVPLSSKAGPSRGRKVMLSALGML 67
Query: 252 XXXXXXXXXXXXXXXXXTDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 431
+DLELH PSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM
Sbjct: 68 AAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 127
Query: 432 DYVAYRHLVGVCYTXXXXXXXXXXXXXQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 611
DYVAYRHLVGVCYT QDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA
Sbjct: 128 DYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 187
Query: 612 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP 791
ANNGALPPDLSYI RARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAI MAPP
Sbjct: 188 ANNGALPPDLSYITRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPP 247
Query: 792 IYNEVLEFDD----------GTPATMSQVTKDVCTFLRWASGPETDHPKRMG 917
IY+EVLEFDD GTPATMSQV KDVCTFLRWAS PE DH KRMG
Sbjct: 248 IYDEVLEFDDEQPLPLTFGAGTPATMSQVAKDVCTFLRWASEPEHDHRKRMG 299
>ref|XP_857616.1| PREDICTED: similar to cytochrome c-1 isoform 4 [Canis familiaris].
Length = 308
Score = 360 bits (924), Expect = 1e-99
Identities = 187/282 (66%), Positives = 190/282 (67%)
Frame = +3
Query: 72 LRGAVLXXXXXXXXXXXXXXLLCGPRPGQLPLRTPQAXXXXXXXXXXXXXXVIXXXXXXX 251
LRGAVL LLCG R GQLPLRT QA V+
Sbjct: 8 LRGAVLGPRGAGLPGAGARGLLCGARLGQLPLRTSQAVPLSSKAGPSRGRKVMLSALGML 67
Query: 252 XXXXXXXXXXXXXXXXXTDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 431
+DLELH PSYPWSHRGLLSSLDHTS M
Sbjct: 68 AAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTS-----------------M 110
Query: 432 DYVAYRHLVGVCYTXXXXXXXXXXXXXQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 611
DYVAYRHLVGVCYT QDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA
Sbjct: 111 DYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 170
Query: 612 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP 791
ANNGALPPDLSYI RARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAI MAPP
Sbjct: 171 ANNGALPPDLSYITRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPP 230
Query: 792 IYNEVLEFDDGTPATMSQVTKDVCTFLRWASGPETDHPKRMG 917
IY+EVLEFDDGTPATMSQV KDVCTFLRWAS PE DH KRMG
Sbjct: 231 IYDEVLEFDDGTPATMSQVAKDVCTFLRWASEPEHDHRKRMG 272
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,574,336
Number of extensions: 984026
Number of successful extensions: 5280
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5237
Number of HSP's successfully gapped: 3
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008818
(918 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125491.1| PREDICTED: cytochrome c1, heme protein, mito... 427 e-120
Alignment gi|XP_003125498.1| PREDICTED: cytochrome c1, heme protein, mito... 426 e-120
>ref|XP_003125491.1| PREDICTED: cytochrome c1, heme protein, mitochondrial-like [Sus
scrofa].
Length = 326
Score = 427 bits (1097), Expect = e-120
Identities = 213/282 (75%), Positives = 213/282 (75%)
Frame = +3
Query: 72 LRGAVLXXXXXXXXXXXXXXLLCGPRPGQLPLRTPQAXXXXXXXXXXXXXXVIXXXXXXX 251
LRGAVL LLCGPRPGQLPLRTPQA VI
Sbjct: 9 LRGAVLGPRGAGLPGARARGLLCGPRPGQLPLRTPQALSLSSKSGLSRGRKVILSALGML 68
Query: 252 XXXXXXXXXXXXXXXXXTDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 431
TDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM
Sbjct: 69 AAGGAGLAVALHSAVSATDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 128
Query: 432 DYVAYRHLVGVCYTXXXXXXXXXXXXXQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 611
DYVAYRHLVGVCYT QDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA
Sbjct: 129 DYVAYRHLVGVCYTEEEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 188
Query: 612 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP 791
ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP
Sbjct: 189 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP 248
Query: 792 IYNEVLEFDDGTPATMSQVTKDVCTFLRWASGPETDHPKRMG 917
IYNEVLEFDDGTPATMSQV KDVCTFLRWAS PE DH KRMG
Sbjct: 249 IYNEVLEFDDGTPATMSQVAKDVCTFLRWASEPEHDHRKRMG 290
>ref|XP_003125498.1| PREDICTED: cytochrome c1, heme protein, mitochondrial-like [Sus
scrofa].
Length = 326
Score = 426 bits (1095), Expect = e-120
Identities = 212/282 (75%), Positives = 213/282 (75%)
Frame = +3
Query: 72 LRGAVLXXXXXXXXXXXXXXLLCGPRPGQLPLRTPQAXXXXXXXXXXXXXXVIXXXXXXX 251
LRGAVL LLCGPRPGQLPLRTPQA VI
Sbjct: 9 LRGAVLGPRGAGLPGARARGLLCGPRPGQLPLRTPQALSLSSKSGLSRGRKVILSALGML 68
Query: 252 XXXXXXXXXXXXXXXXXTDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 431
TDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM
Sbjct: 69 AAGGAGLAVALHSAVSATDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 128
Query: 432 DYVAYRHLVGVCYTXXXXXXXXXXXXXQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 611
DYVAYRH+VGVCYT QDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA
Sbjct: 129 DYVAYRHMVGVCYTEEEAKALSEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 188
Query: 612 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP 791
ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP
Sbjct: 189 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP 248
Query: 792 IYNEVLEFDDGTPATMSQVTKDVCTFLRWASGPETDHPKRMG 917
IYNEVLEFDDGTPATMSQV KDVCTFLRWAS PE DH KRMG
Sbjct: 249 IYNEVLEFDDGTPATMSQVAKDVCTFLRWASEPEHDHRKRMG 290
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,943,956
Number of extensions: 693253
Number of successful extensions: 3391
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3370
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008818
(918 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079843.1| cytochrome c1, heme protein, mitochondrial [Mus... 394 e-110
>ref|NP_079843.1| cytochrome c1, heme protein, mitochondrial [Mus musculus].
Length = 325
Score = 394 bits (1012), Expect = e-110
Identities = 199/282 (70%), Positives = 203/282 (71%)
Frame = +3
Query: 72 LRGAVLXXXXXXXXXXXXXXLLCGPRPGQLPLRTPQAXXXXXXXXXXXXXXVIXXXXXXX 251
LR VL LL G R QLPLRTPQA V+
Sbjct: 8 LRRTVLGPRGVGLPGASAPGLLGGARSRQLPLRTPQAVSLSSKSGPSRGRKVMLSALGML 67
Query: 252 XXXXXXXXXXXXXXXXXTDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 431
+DLELH PSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM
Sbjct: 68 AAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 127
Query: 432 DYVAYRHLVGVCYTXXXXXXXXXXXXXQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 611
DYVAYRHLVGVCYT QDGPN+DGEMFMRPGKLSDYFPKPYPNPEAARA
Sbjct: 128 DYVAYRHLVGVCYTEEEAKALAEEVEVQDGPNDDGEMFMRPGKLSDYFPKPYPNPEAARA 187
Query: 612 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP 791
ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAI MAPP
Sbjct: 188 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPP 247
Query: 792 IYNEVLEFDDGTPATMSQVTKDVCTFLRWASGPETDHPKRMG 917
IY EVLE+DDGTPATMSQV KDV TFLRWAS PE DH KRMG
Sbjct: 248 IYTEVLEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMG 289
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,326,013
Number of extensions: 782963
Number of successful extensions: 3980
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3947
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008818
(918 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001907.2| cytochrome c1, heme protein, mitochondrial [Hom... 403 e-112
>ref|NP_001907.2| cytochrome c1, heme protein, mitochondrial [Homo sapiens].
Length = 325
Score = 403 bits (1036), Expect = e-112
Identities = 200/282 (70%), Positives = 206/282 (73%)
Frame = +3
Query: 72 LRGAVLXXXXXXXXXXXXXXLLCGPRPGQLPLRTPQAXXXXXXXXXXXXXXVIXXXXXXX 251
LRG VL LLC RPGQLPLRTPQA V+
Sbjct: 8 LRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVMLSALGML 67
Query: 252 XXXXXXXXXXXXXXXXXTDLELHAPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSM 431
+DLELH PSYPWSHRGLLSSLDHTSIRRGFQVYKQVC+SCHSM
Sbjct: 68 AAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSM 127
Query: 432 DYVAYRHLVGVCYTXXXXXXXXXXXXXQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARA 611
D+VAYRHLVGVCYT QDGPNEDGEMFMRPGKL DYFPKPYPN EAARA
Sbjct: 128 DFVAYRHLVGVCYTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARA 187
Query: 612 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP 791
ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP
Sbjct: 188 ANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPP 247
Query: 792 IYNEVLEFDDGTPATMSQVTKDVCTFLRWASGPETDHPKRMG 917
IY +VLEFDDGTPATMSQ+ KDVCTFLRWAS PE DH KRMG
Sbjct: 248 IYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMG 289
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,787,237
Number of extensions: 951284
Number of successful extensions: 5187
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5165
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008818
(918 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 396 e-108
>Sscrofa_Chr04
|| Length = 143465943
Score = 396 bits (200), Expect = e-108
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 177 caggcgttatccttgtcgtcgaagtctggcctgtcccgggggcggaaagtgattctgtcc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761318 caggcgttatccttgtcgtcgaagtctggcctgtcccgggggcggaaagtgattctgtcc 761259
Query: 237 gcgttgggcatgctggcggcagggggtgcagggctggccgtggctctgcattcggccgtg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761258 gcgttgggcatgctggcggcagggggtgcagggctggccgtggctctgcattcggccgtg 761199
Query: 297 agtgccactgacctggagctgcacgcccccagctatccgtggtctcaccgcggcctcctc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761198 agtgccactgacctggagctgcacgcccccagctatccgtggtctcaccgcggcctcctc 761139
Query: 357 tcatccctggaccacaccag 376
||||||||||||||||||||
Sbjct: 761138 tcatccctggaccacaccag 761119
Score = 396 bits (200), Expect = e-108
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 177 caggcgttatccttgtcgtcgaagtctggcctgtcccgggggcggaaagtgattctgtcc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912907 caggcgttatccttgtcgtcgaagtctggcctgtcccgggggcggaaagtgattctgtcc 912966
Query: 237 gcgttgggcatgctggcggcagggggtgcagggctggccgtggctctgcattcggccgtg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912967 gcgttgggcatgctggcggcagggggtgcagggctggccgtggctctgcattcggccgtg 913026
Query: 297 agtgccactgacctggagctgcacgcccccagctatccgtggtctcaccgcggcctcctc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913027 agtgccactgacctggagctgcacgcccccagctatccgtggtctcaccgcggcctcctc 913086
Query: 357 tcatccctggaccacaccag 376
||||||||||||||||||||
Sbjct: 913087 tcatccctggaccacaccag 913106
Score = 325 bits (164), Expect = 2e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 660 aggcacggtggtgaggactacgtcttctccctgctcacgggctactgtgagccgcccact 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760574 aggcacggtggtgaggactacgtcttctccctgctcacgggctactgtgagccgcccact 760515
Query: 720 ggagtgtcgctgcgagaaggcctctacttcaacccctactttcctggccaggccatagcc 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760514 ggagtgtcgctgcgagaaggcctctacttcaacccctactttcctggccaggccatagcc 760455
Query: 780 atggccccgcccatctacaacgaagtcttggagtttgacgatgg 823
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760454 atggccccgcccatctacaacgaagtcttggagtttgacgatgg 760411
Score = 325 bits (164), Expect = 2e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 660 aggcacggtggtgaggactacgtcttctccctgctcacgggctactgtgagccgcccact 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913651 aggcacggtggtgaggactacgtcttctccctgctcacgggctactgtgagccgcccact 913710
Query: 720 ggagtgtcgctgcgagaaggcctctacttcaacccctactttcctggccaggccatagcc 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913711 ggagtgtcgctgcgagaaggcctctacttcaacccctactttcctggccaggccatagcc 913770
Query: 780 atggccccgcccatctacaacgaagtcttggagtttgacgatgg 823
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913771 atggccccgcccatctacaacgaagtcttggagtttgacgatgg 913814
Score = 303 bits (153), Expect = 9e-80
Identities = 159/161 (98%)
Strand = Plus / Minus
Query: 502 aggtggaggttcaagacggccccaatgaggatggggagatgttcatgcggccaggaaagc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760822 aggtggaggttcaagacggccccaatgaggatggggagatgttcatgcggccaggaaagc 760763
Query: 562 tgtctgactacttccccaaaccataccccaaccccgaggctgctcgagcggccaacaacg 621
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 760762 tgtctgactacttccccaaaccgtaccccaaccccgaggctgctcgagcggccaacaacg 760703
Query: 622 gagcactgccccctgacctcagctacatcgtgcgagctagg 662
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 760702 gagcactgccccctgacctcagctacattgtgcgagctagg 760662
Score = 303 bits (153), Expect = 9e-80
Identities = 159/161 (98%)
Strand = Plus / Plus
Query: 502 aggtggaggttcaagacggccccaatgaggatggggagatgttcatgcggccaggaaagc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913403 aggtggaggttcaagacggccccaatgaggatggggagatgttcatgcggccaggaaagc 913462
Query: 562 tgtctgactacttccccaaaccataccccaaccccgaggctgctcgagcggccaacaacg 621
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 913463 tgtctgactacttccccaaaccgtaccccaaccccgaggctgctcgagcggccaacaacg 913522
Query: 622 gagcactgccccctgacctcagctacatcgtgcgagctagg 662
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 913523 gagcactgccccctgacctcagctacattgtgcgagctagg 913563
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 374 cagcatccggaggggtttccaggtatacaagcaggtgtgctcctcctgccacagcatgga 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761041 cagcatccggaggggtttccaggtatacaagcaggtgtgctcctcctgccacagcatgga 760982
Query: 434 ctacgtggcctaccgccacctggtgggcgtgtgctacaccgaggaggaagctaaggccct 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760981 ctacgtggcctaccgccacctggtgggcgtgtgctacaccgaggaggaagctaaggccct 760922
Query: 494 ggctgaggaggtgg 507
||||||||||||||
Sbjct: 760921 ggctgaggaggtgg 760908
Score = 250 bits (126), Expect = 1e-63
Identities = 132/134 (98%)
Strand = Plus / Plus
Query: 374 cagcatccggaggggtttccaggtatacaagcaggtgtgctcctcctgccacagcatgga 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913184 cagcatccggaggggtttccaggtatacaagcaggtgtgctcctcctgccacagcatgga 913243
Query: 434 ctacgtggcctaccgccacctggtgggcgtgtgctacaccgaggaggaagctaaggccct 493
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 913244 ctacgtggcctaccgccacatggtgggcgtgtgctacaccgaggaggaagctaaggccct 913303
Query: 494 ggctgaggaggtgg 507
| ||||||||||||
Sbjct: 913304 gtctgaggaggtgg 913317
Score = 165 bits (83), Expect = 5e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 6 cagagggcgacgggagcggcggcctcgccgcagagggccaagatgtcggcggcagcggcg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762114 cagagggcgacgggagcggcggcctcgccgcagagggccaagatgtcggcggcagcggcg 762055
Query: 66 gcttcccttcgcggggcggtgct 88
|||||||||||||||||||||||
Sbjct: 762054 gcttcccttcgcggggcggtgct 762032
Score = 165 bits (83), Expect = 5e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 6 cagagggcgacgggagcggcggcctcgccgcagagggccaagatgtcggcggcagcggcg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912111 cagagggcgacgggagcggcggcctcgccgcagagggccaagatgtcggcggcagcggcg 912170
Query: 66 gcttcccttcgcggggcggtgct 88
|||||||||||||||||||||||
Sbjct: 912171 gcttcccttcgcggggcggtgct 912193
Score = 145 bits (73), Expect = 5e-32
Identities = 91/97 (93%)
Strand = Plus / Minus
Query: 822 ggcaccccagctaccatgtcccaggttaccaaggacgtgtgtactttcctgcgctgggca 881
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 760145 ggcaccccagctaccatgtcccaggtagccaaggacgtgtgtactttcctgcgctgggca 760086
Query: 882 tctggacccgaaaccgaccatcccaaacgcatggggc 918
|||| ||||||| |||||||| ||||||||||||||
Sbjct: 760085 tctgaacccgaacacgaccatcgcaaacgcatggggc 760049
Score = 145 bits (73), Expect = 5e-32
Identities = 91/97 (93%)
Strand = Plus / Plus
Query: 822 ggcaccccagctaccatgtcccaggttaccaaggacgtgtgtactttcctgcgctgggca 881
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 914080 ggcaccccagctaccatgtcccaggtagccaaggacgtgtgtactttcctgcgctgggca 914139
Query: 882 tctggacccgaaaccgaccatcccaaacgcatggggc 918
|||| ||||||| |||||||| ||||||||||||||
Sbjct: 914140 tctgaacccgaacacgaccatcgcaaacgcatggggc 914176
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 131 tctactatgcggcccgcggcccgggcaactcccactgcggacacctcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761989 tctactatgcggcccgcggcccgggcaactcccactgcggacacctcagg 761940
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 131 tctactatgcggcccgcggcccgggcaactcccactgcggacacctcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912236 tctactatgcggcccgcggcccgggcaactcccactgcggacacctcagg 912285
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,837,690
Number of extensions: 99
Number of successful extensions: 99
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 14
Length of query: 918
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 897
Effective length of database: 2,808,413,156
Effective search space: 2519146600932
Effective search space used: 2519146600932
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)