Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008824
(935 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179733.1| alpha-N-acetylgalactosaminide alpha-2,6-sial... 377 e-104
Alignment gi|XP_002686345.1| PREDICTED: sialyltransferase 7E-like [Bos ta... 377 e-104
Alignment gi|NP_001001151.2| alpha-N-acetylgalactosaminide alpha-2,6-sial... 169 3e-42
Alignment gi|NP_991360.1| sialyltransferase 7B [Bos taurus]. 140 1e-33
Alignment gi|NP_001008668.2| beta-galactoside alpha-2,6-sialyltransferase... 65 7e-11
Alignment gi|NP_001091452.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 60 3e-09
Alignment gi|NP_001002892.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 55 1e-07
Alignment gi|NP_001001599.1| sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,... 54 2e-07
Alignment gi|NP_803483.1| beta-galactoside alpha-2,6-sialyltransferase 1 ... 53 3e-07
Alignment gi|NP_001091582.1| alpha-2,8-sialyltransferase 8B [Bos taurus]. 53 3e-07
>ref|NP_001179733.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Bos
taurus].
Length = 331
Score = 377 bits (967), Expect = e-104
Identities = 194/237 (81%), Positives = 196/237 (82%)
Frame = +3
Query: 225 MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPXXXXXXXXXXXTGXXXXXXXXXX 404
MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPP T
Sbjct: 1 MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPQQQQQQQAAA-TLSSRRSAESSP 59
Query: 405 XXXXXXXXXXXXLEGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMN 584
L+GYLGV DHKPLKMHCRDCALVTSSG LLRS QG QID+TECVIRMN
Sbjct: 60 PPRPETPAGPRPLDGYLGVVDHKPLKMHCRDCALVTSSGQLLRSRQGAQIDQTECVIRMN 119
Query: 585 DAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQ 764
DAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQ
Sbjct: 120 DAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQ 179
Query: 765 VYNNLQLLSQVLPRLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
VYNNLQLLSQVLPRLKAFMI RHKMLQFDELFKRETGKDRKISNTWLSTGW MTIA
Sbjct: 180 VYNNLQLLSQVLPRLKAFMIARHKMLQFDELFKRETGKDRKISNTWLSTGWFTMTIA 236
>ref|XP_002686345.1| PREDICTED: sialyltransferase 7E-like [Bos taurus].
Length = 331
Score = 377 bits (967), Expect = e-104
Identities = 194/237 (81%), Positives = 196/237 (82%)
Frame = +3
Query: 225 MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPXXXXXXXXXXXTGXXXXXXXXXX 404
MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPP T
Sbjct: 1 MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPQQQQQQQAAA-TLSSRRSAESSP 59
Query: 405 XXXXXXXXXXXXLEGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMN 584
L+GYLGV DHKPLKMHCRDCALVTSSG LLRS QG QID+TECVIRMN
Sbjct: 60 PPRPETPAGPRPLDGYLGVVDHKPLKMHCRDCALVTSSGQLLRSRQGAQIDQTECVIRMN 119
Query: 585 DAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQ 764
DAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQ
Sbjct: 120 DAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQ 179
Query: 765 VYNNLQLLSQVLPRLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
VYNNLQLLSQVLPRLKAFMI RHKMLQFDELFKRETGKDRKISNTWLSTGW MTIA
Sbjct: 180 VYNNLQLLSQVLPRLKAFMIARHKMLQFDELFKRETGKDRKISNTWLSTGWFTMTIA 236
>ref|NP_001001151.2| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Bos
taurus].
Length = 332
Score = 169 bits (428), Expect = 3e-42
Identities = 79/164 (48%), Positives = 112/164 (68%)
Frame = +3
Query: 444 EGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
+GY+ + +K L C C +VTSS HLL + GP+I++ EC IRMNDAPT GY DVGN
Sbjct: 89 DGYIPILGNKTLPSRCGQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGN 148
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLP 803
+T+ RV+AHSS+ +LR + +N + TVFIFWGP + M++ +G + +Q V P
Sbjct: 149 KTTFRVVAHSSVFHVLRRPQEFVNRTPETVFIFWGPPNKMQKP-QGSLVRVIQRAGLVFP 207
Query: 804 RLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
++A+ I+ +M QFD+LF+ ETGKDR+ S++WLSTGW M IA
Sbjct: 208 NMEAYAISLSRMRQFDDLFRSETGKDREKSHSWLSTGWFTMVIA 251
>ref|NP_991360.1| sialyltransferase 7B [Bos taurus].
Length = 323
Score = 140 bits (354), Expect = 1e-33
Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Frame = +3
Query: 447 GYLGVADHKPLKMH-CRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
GY V D KPL CR CA+V+SSG +L S G +ID ECV+RMN APT G+ DVG
Sbjct: 58 GYSSVPDGKPLVRELCRSCAVVSSSGQMLGSGLGAEIDSAECVLRMNQAPTVGFEADVGQ 117
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLP 803
R++LRVI+H+S+ +LRN ++ T+++ WG +M R G+ Y L L+++ P
Sbjct: 118 RSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGKHMDRALGGRTYRALLQLTRMYP 177
Query: 804 RLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
L+ + T M D++F+ ETGK+R+ S ++LSTGW M +A
Sbjct: 178 GLQVYTFTERMMAYCDQVFQDETGKNRRQSGSFLSTGWFTMILA 221
>ref|NP_001008668.2| beta-galactoside alpha-2,6-sialyltransferase 2 [Bos taurus].
Length = 495
Score = 65.5 bits (158), Expect = 7e-11
Identities = 33/88 (37%), Positives = 51/88 (57%)
Frame = +3
Query: 477 LKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSS 656
L R CA+VTS+G +L S G +ID + V+R N APTRGY +DVGN+T++R+I
Sbjct: 261 LPRRLRTCAVVTSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTVRIINSQI 320
Query: 657 IQRILRNRHDLLNVSQGTVFIFWGPSSY 740
+ + D + + + + W P+ Y
Sbjct: 321 LTNPSYHFMDSA-LYKDVILVAWDPAPY 347
>ref|NP_001091452.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Bos taurus].
Length = 339
Score = 60.1 bits (144), Expect = 3e-09
Identities = 28/63 (44%), Positives = 40/63 (63%)
Frame = +3
Query: 489 CRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRI 668
CR CA+V +SG+L S GPQID + V+RMN APT G+ DVG +T+ ++ S + +
Sbjct: 138 CRRCAVVGNSGNLRESWYGPQIDSHDFVLRMNKAPTAGFEADVGRKTTHHLVYPESFREL 197
Query: 669 LRN 677
N
Sbjct: 198 AEN 200
>ref|NP_001002892.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Bos taurus].
Length = 350
Score = 54.7 bits (130), Expect = 1e-07
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Frame = +3
Query: 489 CRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRI 668
CR CA+V +SG+L S GP +D ++RMN APT G+ +DVG+RT+ + S + +
Sbjct: 149 CRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAPTVGFEQDVGSRTTHHFMYPESAKNL 208
Query: 669 LRN---------RHDLL----NVSQGTVFIFWGP-SSYMRRD-GKGQVYN 773
N DLL +S G + + P S++R D K Q+YN
Sbjct: 209 PANVSFVLVPFKALDLLWIASALSTGQIRFTYAPVKSFLRVDKEKVQIYN 258
>ref|NP_001001599.1| sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase
[Bos taurus].
Length = 379
Score = 53.9 bits (128), Expect = 2e-07
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +3
Query: 498 CALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRN 677
CA+V +SG L S GPQIDK++ V R N APT + RDVG +T+L S +++ N
Sbjct: 161 CAVVGNSGILTGSRCGPQIDKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILEKYYNN 220
>ref|NP_803483.1| beta-galactoside alpha-2,6-sialyltransferase 1 [Bos taurus].
Length = 405
Score = 53.1 bits (126), Expect = 3e-07
Identities = 34/99 (34%), Positives = 52/99 (52%)
Frame = +3
Query: 444 EGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
EGYL D + CA+V+S+G L S G +ID + V+R N APT + +DVG
Sbjct: 163 EGYLPQEDIRSKAGPWGRCAVVSSAGSLKSSRLGREIDDHDAVLRFNGAPTVKFQQDVGT 222
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSY 740
+T++R++ + D L ++G + I W PS Y
Sbjct: 223 KTTIRLVNSQLVTTEAGFLKDSL-YNEG-ILIVWDPSVY 259
>ref|NP_001091582.1| alpha-2,8-sialyltransferase 8B [Bos taurus].
Length = 366
Score = 53.1 bits (126), Expect = 3e-07
Identities = 42/109 (38%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Frame = +3
Query: 474 PLK-MHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAH 650
PLK H CA+V +SG LL S G +ID VIR N AP + Y RDVG +T L +
Sbjct: 139 PLKNKHFGTCAIVGNSGVLLNSGCGQEIDTHSFVIRCNLAPVQEYARDVGLKTDLVTMNP 198
Query: 651 SSIQRILRNRHDLLNVSQGTVF----------IFWGPSSYMRRDGKGQV 767
S +QR DL+N + I W P ++M R GK +V
Sbjct: 199 SVVQRAF---EDLVNATWREKLLQRLHSLNGSILWIP-AFMARGGKQRV 243
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,837,255
Number of extensions: 853818
Number of successful extensions: 4920
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4785
Number of HSP's successfully gapped: 14
Length of query: 311
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,306,398
Effective search space: 2990037182
Effective search space used: 2990037182
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008824
(935 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855487.1| PREDICTED: similar to sialyltransferase 7E [Can... 371 e-103
Alignment gi|XP_850906.1| PREDICTED: similar to ST6 (alpha-N-acetyl-neura... 168 8e-42
Alignment gi|XP_548445.2| PREDICTED: similar to ST6 (alpha-N-acetyl-neura... 168 8e-42
Alignment gi|XP_862583.1| PREDICTED: similar to ST6 (alpha-N-acetyl-neura... 168 8e-42
Alignment gi|XP_851433.1| PREDICTED: similar to Alpha-N-acetyl-neuraminyl... 144 9e-35
Alignment gi|XP_547326.2| PREDICTED: similar to ST6 (alpha-N-acetyl-neura... 132 4e-31
Alignment gi|XP_538436.2| PREDICTED: similar to beta-galactoside alpha-2,... 67 3e-11
Alignment gi|XP_539171.2| PREDICTED: similar to CMP-N-acetylneuraminate-b... 60 2e-09
Alignment gi|XP_855629.1| PREDICTED: similar to CMP-N-acetylneuraminate-b... 60 2e-09
Alignment gi|NP_001091017.1| alpha-2,8-sialyltransferase 8B [Canis lupus ... 59 9e-09
>ref|XP_855487.1| PREDICTED: similar to sialyltransferase 7E [Canis familiaris].
Length = 338
Score = 371 bits (953), Expect = e-103
Identities = 190/243 (78%), Positives = 196/243 (80%), Gaps = 6/243 (2%)
Frame = +3
Query: 225 MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPXXXXXXXXXXX------TGXXXX 386
MKTL+RHGLAVCLALTTMCTSLLLVYSSLGGQ+ERPP +
Sbjct: 1 MKTLMRHGLAVCLALTTMCTSLLLVYSSLGGQRERPPQRRQQQQQQQQQQEAAGSAPPAA 60
Query: 387 XXXXXXXXXXXXXXXXXXLEGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTE 566
L+GYLGV D KPLKMHCRDCALVTSSGHLLRS QGPQID+TE
Sbjct: 61 DSSPPPRAPAPAPAAPRPLDGYLGVRDRKPLKMHCRDCALVTSSGHLLRSRQGPQIDQTE 120
Query: 567 CVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMR 746
CVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMR
Sbjct: 121 CVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMR 180
Query: 747 RDGKGQVYNNLQLLSQVLPRLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHM 926
RDGKGQVYNNLQLLSQVLPRLKAFM TRHKML FDELFK+ETGKDRKISNTWLSTGW M
Sbjct: 181 RDGKGQVYNNLQLLSQVLPRLKAFMTTRHKMLHFDELFKQETGKDRKISNTWLSTGWFTM 240
Query: 927 TIA 935
TIA
Sbjct: 241 TIA 243
>ref|XP_850906.1| PREDICTED: similar to ST6
(alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
isoform 3 [Canis familiaris].
Length = 333
Score = 168 bits (425), Expect = 8e-42
Identities = 78/164 (47%), Positives = 112/164 (68%)
Frame = +3
Query: 444 EGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
+ Y+ + +K L C C +VTSS HLL + GP+I++ EC IRMNDAPT GY DVGN
Sbjct: 90 DAYVPILGNKTLPSRCHQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGN 149
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLP 803
+T+ RV+AHSS+ R+LR + +N + TVFIFWGP + M++ +G + +Q V P
Sbjct: 150 KTTFRVVAHSSVFRVLRRPQEFVNRTPETVFIFWGPPNKMQKP-QGSLVRVIQRAGLVFP 208
Query: 804 RLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
++A+ ++ +M QFD+LF+ ETGKDR+ S++WLSTGW M IA
Sbjct: 209 NMEAYAVSPGRMRQFDDLFRGETGKDREKSHSWLSTGWFTMVIA 252
>ref|XP_548445.2| PREDICTED: similar to ST6
(alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
isoform 1 [Canis familiaris].
Length = 299
Score = 168 bits (425), Expect = 8e-42
Identities = 78/164 (47%), Positives = 112/164 (68%)
Frame = +3
Query: 444 EGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
+ Y+ + +K L C C +VTSS HLL + GP+I++ EC IRMNDAPT GY DVGN
Sbjct: 56 DAYVPILGNKTLPSRCHQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGN 115
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLP 803
+T+ RV+AHSS+ R+LR + +N + TVFIFWGP + M++ +G + +Q V P
Sbjct: 116 KTTFRVVAHSSVFRVLRRPQEFVNRTPETVFIFWGPPNKMQKP-QGSLVRVIQRAGLVFP 174
Query: 804 RLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
++A+ ++ +M QFD+LF+ ETGKDR+ S++WLSTGW M IA
Sbjct: 175 NMEAYAVSPGRMRQFDDLFRGETGKDREKSHSWLSTGWFTMVIA 218
>ref|XP_862583.1| PREDICTED: similar to ST6
(alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
isoform 4 [Canis familiaris].
Length = 271
Score = 168 bits (425), Expect = 8e-42
Identities = 78/164 (47%), Positives = 112/164 (68%)
Frame = +3
Query: 444 EGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
+ Y+ + +K L C C +VTSS HLL + GP+I++ EC IRMNDAPT GY DVGN
Sbjct: 90 DAYVPILGNKTLPSRCHQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGN 149
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLP 803
+T+ RV+AHSS+ R+LR + +N + TVFIFWGP + M++ +G + +Q V P
Sbjct: 150 KTTFRVVAHSSVFRVLRRPQEFVNRTPETVFIFWGPPNKMQKP-QGSLVRVIQRAGLVFP 208
Query: 804 RLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
++A+ ++ +M QFD+LF+ ETGKDR+ S++WLSTGW M IA
Sbjct: 209 NMEAYAVSPGRMRQFDDLFRGETGKDREKSHSWLSTGWFTMVIA 252
>ref|XP_851433.1| PREDICTED: similar to
Alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase
(NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc-alpha-2,
6-sialyltransferase) (ST6GalNAc IV) (Sialyltransferase
7D) (Sialyltransferase 3C)... [Canis familiaris].
Length = 397
Score = 144 bits (364), Expect = 9e-35
Identities = 71/164 (43%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Frame = +3
Query: 447 GYLGVADHKPL-KMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
GY V D KPL + CR CA+V+SSG +L S G +ID ECV+RMN APT G+ DVG
Sbjct: 153 GYSSVPDGKPLVREPCRSCAVVSSSGQMLGSGLGAEIDSAECVLRMNQAPTVGFEADVGR 212
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLP 803
R++LRV++H+S+ +LRN ++ T+++ WG +M R G+ Y L L+++ P
Sbjct: 213 RSTLRVVSHTSVPLLLRNYSHYFQHARDTLYVVWGQGKHMDRTLGGRTYRTLLQLTKMYP 272
Query: 804 RLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
L+ + T H M D++F+ ETGK+R+ S ++LSTGW M +A
Sbjct: 273 GLQVYTFTEHMMAYCDQVFQDETGKNRRQSGSFLSTGWFTMILA 316
>ref|XP_547326.2| PREDICTED: similar to ST6
(alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
[Canis familiaris].
Length = 231
Score = 132 bits (333), Expect = 4e-31
Identities = 58/146 (39%), Positives = 93/146 (63%)
Frame = +3
Query: 447 GYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNR 626
GY+ V +PL++ C CA+V++SG ++ G +ID++ C+ RMN+APT+GY DVG
Sbjct: 86 GYINVRTQEPLQLDCDLCAIVSNSGQMVGQKVGNEIDQSSCIWRMNNAPTKGYEEDVGRM 145
Query: 627 TSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLPR 806
T +RV++H+S+ +L+N + T+++ WGP MR+DG G VYN L+ + P
Sbjct: 146 TMIRVVSHTSVPLLLKNPDYFFKEANATIYVIWGPFRNMRKDGNGIVYNMLKKTVDIYPN 205
Query: 807 LKAFMITRHKMLQFDELFKRETGKDR 884
+ ++ T +M D +FK+ETGKDR
Sbjct: 206 AQIYVTTEKRMSYCDGIFKKETGKDR 231
>ref|XP_538436.2| PREDICTED: similar to beta-galactoside alpha-2,6-sialyltransferase
II [Canis familiaris].
Length = 553
Score = 66.6 bits (161), Expect = 3e-11
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = +3
Query: 492 RDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRIL 671
R CA+V S+G +L S G +ID + V+R N APTRGY +DVGN+T++R+I + Q +
Sbjct: 71 RSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTVRII---NSQILT 127
Query: 672 RNRHDLLNVS--QGTVFIFWGPSSY 740
H ++ S + + + W P+ Y
Sbjct: 128 NPSHHFIDSSLYKDVILVAWDPAPY 152
>ref|XP_539171.2| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... iso [Canis
familiaris].
Length = 342
Score = 60.5 bits (145), Expect = 2e-09
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = +3
Query: 489 CRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRI 668
CR CA+V +SG+L S GPQID + V+RMN APT G+ DVG++T+ ++ S + +
Sbjct: 141 CRRCAVVGNSGNLRESWYGPQIDSHDFVLRMNKAPTAGFEMDVGSKTTHHLVYPESFREL 200
Query: 669 LRN 677
N
Sbjct: 201 AEN 203
>ref|XP_855629.1| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... iso [Canis
familiaris].
Length = 227
Score = 60.5 bits (145), Expect = 2e-09
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = +3
Query: 489 CRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRI 668
CR CA+V +SG+L S GPQID + V+RMN APT G+ DVG++T+ ++ S + +
Sbjct: 138 CRRCAVVGNSGNLRESWYGPQIDSHDFVLRMNKAPTAGFEMDVGSKTTHHLVYPESFREL 197
Query: 669 LRN 677
N
Sbjct: 198 AEN 200
>ref|NP_001091017.1| alpha-2,8-sialyltransferase 8B [Canis lupus familiaris].
Length = 332
Score = 58.5 bits (140), Expect = 9e-09
Identities = 45/109 (41%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Frame = +3
Query: 474 PLK-MHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAH 650
PLK H R CA+V +SG LL S G +ID VIR N AP + YGRDVG +T L +
Sbjct: 105 PLKNKHFRTCAIVGNSGVLLNSGCGQEIDTHSFVIRCNLAPVQEYGRDVGLKTDLVTMNP 164
Query: 651 SSIQRILRNRHDLLNVSQGTVF----------IFWGPSSYMRRDGKGQV 767
S IQR DL+N + I W P ++M R GK +V
Sbjct: 165 SVIQRAF---EDLVNATWREKLLQRLRSLNGSILWIP-AFMARGGKERV 209
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,941,196
Number of extensions: 846290
Number of successful extensions: 5143
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4991
Number of HSP's successfully gapped: 19
Length of query: 311
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 208
Effective length of database: 15,440,896
Effective search space: 3211706368
Effective search space used: 3211706368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008824
(935 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999601.1| beta-galactosamide alpha-2,6-sialyltransferase ... 400 e-112
Alignment gi|XP_003122237.2| PREDICTED: alpha-N-acetylgalactosaminide alp... 171 7e-43
Alignment gi|NP_998949.1| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 141 4e-34
Alignment gi|XP_003356475.1| PREDICTED: alpha-N-acetylgalactosaminide alp... 125 3e-29
Alignment gi|XP_003124903.1| PREDICTED: beta-galactoside alpha-2,6-sialyl... 68 8e-12
Alignment gi|NP_001004047.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 60 2e-09
Alignment gi|XP_003361349.1| PREDICTED: CMP-N-acetylneuraminate-beta-gala... 55 7e-08
Alignment gi|XP_001924922.1| PREDICTED: alpha-2,8-sialyltransferase 8B [S... 54 2e-07
Alignment gi|NP_998924.1| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 53 3e-07
Alignment gi|XP_003361588.1| PREDICTED: sia-alpha-2,3-Gal-beta-1,4-GlcNAc... 52 5e-07
>ref|NP_999601.1| beta-galactosamide alpha-2,6-sialyltransferase [Sus scrofa].
Length = 332
Score = 400 bits (1028), Expect = e-112
Identities = 202/237 (85%), Positives = 202/237 (85%)
Frame = +3
Query: 225 MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPXXXXXXXXXXXTGXXXXXXXXXX 404
MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPP TG
Sbjct: 1 MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPQQQQQQQQAAATGSAQRSAESSP 60
Query: 405 XXXXXXXXXXXXLEGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMN 584
LEGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMN
Sbjct: 61 PPRPETPAGPRPLEGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMN 120
Query: 585 DAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQ 764
DAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQ
Sbjct: 121 DAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQ 180
Query: 765 VYNNLQLLSQVLPRLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
VYNNLQLLSQVLPRLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGW MTIA
Sbjct: 181 VYNNLQLLSQVLPRLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWFTMTIA 237
>ref|XP_003122237.2| PREDICTED: alpha-N-acetylgalactosaminide
alpha-2,6-sialyltransferase 6-like [Sus scrofa].
Length = 299
Score = 171 bits (432), Expect = 7e-43
Identities = 80/164 (48%), Positives = 113/164 (68%)
Frame = +3
Query: 444 EGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
+GY+ + +K L C C +VTSS HLL + GP+I++ EC IRMNDAPT GY DVGN
Sbjct: 56 DGYVPLLGNKTLPSRCHQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGN 115
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLP 803
+T+ RV+AHSS+ R+LR + +N + TVFIFWGP + M++ +G + +Q V P
Sbjct: 116 KTTFRVVAHSSVFRVLRKPQEFVNRTPETVFIFWGPPNKMQKP-QGSLVRVIQRAGLVFP 174
Query: 804 RLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
L+A+ ++ +M QFD+LF+ ETGKDR+ S++WLSTGW M IA
Sbjct: 175 NLEAYAVSLGRMRQFDDLFRSETGKDREKSHSWLSTGWFTMVIA 218
>ref|NP_998949.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 [Sus
scrofa].
Length = 302
Score = 141 bits (356), Expect = 4e-34
Identities = 71/164 (43%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Frame = +3
Query: 447 GYLGVADHKPL-KMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
GY V D KPL + CR CA+V+SSG +L S G +ID ECV+RMN APT G+ DVG
Sbjct: 58 GYSSVPDGKPLVREPCRSCAVVSSSGQMLGSGLGAEIDGAECVLRMNQAPTVGFEADVGR 117
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLP 803
R++LRVI+H+S+ +LRN ++ T+++ WG +M R+ G+ Y L L+++ P
Sbjct: 118 RSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYP 177
Query: 804 RLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
L+ + T M D++F+ ETGK+R+ S ++LSTGW M +A
Sbjct: 178 GLQVYTFTERMMAYCDQVFQDETGKNRRQSGSFLSTGWFTMILA 221
>ref|XP_003356475.1| PREDICTED: alpha-N-acetylgalactosaminide
alpha-2,6-sialyltransferase 3-like [Sus scrofa].
Length = 162
Score = 125 bits (315), Expect = 3e-29
Identities = 55/137 (40%), Positives = 89/137 (64%)
Frame = +3
Query: 474 PLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHS 653
PL++ C CA+V++SG ++ G +ID++ C+ RMN+APT+GY DVG+ T +RV++H+
Sbjct: 26 PLQLDCNLCAIVSNSGQMVGQKVGNEIDQSSCIWRMNNAPTKGYEEDVGHMTRIRVVSHT 85
Query: 654 SIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLPRLKAFMITRH 833
S+ +L+N + T+++ WGP MR+DG G VYN L+ + P + ++ T
Sbjct: 86 SVPLLLKNPDYFFKEANTTIYVIWGPFRNMRKDGNGIVYNMLKKTVDIYPHAQIYVTTEK 145
Query: 834 KMLQFDELFKRETGKDR 884
+M D +FK+ETGKDR
Sbjct: 146 RMSYCDGVFKKETGKDR 162
>ref|XP_003124903.1| PREDICTED: beta-galactoside alpha-2,6-sialyltransferase 2-like [Sus
scrofa].
Length = 503
Score = 67.8 bits (164), Expect = 8e-12
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = +3
Query: 492 RDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRIL 671
R CA+VTS+G +L S G +ID + V+R N APT GY +DVGN+T++R+I + Q +
Sbjct: 274 RSCAVVTSAGAILNSSLGEEIDSHDAVLRFNSAPTHGYEKDVGNKTTIRII---NSQILT 330
Query: 672 RNRHDLLNVS--QGTVFIFWGPSSY 740
H ++ S + + + W P+ Y
Sbjct: 331 NPNHHFIDSSLYKDVILVAWDPAPY 355
>ref|NP_001004047.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Sus scrofa].
Length = 343
Score = 59.7 bits (143), Expect = 2e-09
Identities = 27/60 (45%), Positives = 40/60 (66%)
Frame = +3
Query: 489 CRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRI 668
CR CA+V +SG+L S+ GPQID + V+RMN APT G+ DVG++T+ + S + +
Sbjct: 142 CRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGFEADVGSKTTHHFVYPESFREL 201
>ref|XP_003361349.1| PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Sus scrofa].
Length = 335
Score = 54.7 bits (130), Expect = 7e-08
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Frame = +3
Query: 489 CRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRI 668
CR CA+V +SG+L S GP +D ++RMN APT G+ +DVG+RT+ + S + +
Sbjct: 149 CRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAPTVGFEQDVGSRTTHHFMYPESAKNL 208
Query: 669 LRN---------RHDLL----NVSQGTVFIFWGP-SSYMRRD-GKGQVYN 773
N DLL +S G + + P S++R D K Q+YN
Sbjct: 209 PANVSFVLVPFKALDLLWIASALSTGQIRFTYAPVKSFLRVDKEKVQIYN 258
>ref|XP_001924922.1| PREDICTED: alpha-2,8-sialyltransferase 8B [Sus scrofa].
Length = 375
Score = 53.5 bits (127), Expect = 2e-07
Identities = 43/109 (39%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Frame = +3
Query: 474 PLK-MHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAH 650
PLK H CA+V +SG LL S G +ID VIR N AP + Y RDVG +T L +
Sbjct: 148 PLKNKHFGTCAIVGNSGVLLNSGCGEEIDTHSFVIRCNLAPVQEYARDVGIKTDLVTMNP 207
Query: 651 SSIQRILRNRHDLLNVSQGTVF----------IFWGPSSYMRRDGKGQV 767
S IQR DL+N + I W P ++M R GK +V
Sbjct: 208 SVIQRAF---EDLVNATWREKLLQRLHSLNGSILWIP-AFMARGGKERV 252
>ref|NP_998924.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase [Sus scrofa].
Length = 374
Score = 52.8 bits (125), Expect = 3e-07
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +3
Query: 483 MHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRV-IAHSSI 659
+ CR C +V + G L G +ID + V+R+N AP +G+ +DVG++T+LR+ ++
Sbjct: 154 LSCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPVKGFEKDVGSKTTLRITYPEGAM 213
Query: 660 QRILRNRHDLLNVSQG 707
QR + D L V G
Sbjct: 214 QRPEQYERDSLFVLAG 229
>ref|XP_003361588.1| PREDICTED: sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha
2,8-sialyltransferase-like [Sus scrofa].
Length = 379
Score = 52.0 bits (123), Expect = 5e-07
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +3
Query: 486 HCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQR 665
H CA+V +SG L S G QIDK++ V R N APT + RDVG +T+L S +++
Sbjct: 157 HYNICAVVGNSGILTGSRCGQQIDKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILEK 216
Query: 666 ILRN 677
N
Sbjct: 217 YYNN 220
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,156,470
Number of extensions: 586560
Number of successful extensions: 3452
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3336
Number of HSP's successfully gapped: 13
Length of query: 311
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 212
Effective length of database: 8,879,129
Effective search space: 1882375348
Effective search space used: 1882375348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008824
(935 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036158.3| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 371 e-103
Alignment gi|NP_001020482.1| alpha-N-acetylgalactosaminide alpha-2,6-sial... 165 4e-41
Alignment gi|NP_001020481.1| alpha-N-acetylgalactosaminide alpha-2,6-sial... 165 4e-41
Alignment gi|NP_058669.1| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 165 4e-41
Alignment gi|NP_035502.1| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 142 5e-34
Alignment gi|NP_035503.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1... 139 2e-33
Alignment gi|NP_766417.1| beta-galactoside alpha-2,6-sialyltransferase 2 ... 64 2e-10
Alignment gi|NP_033203.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 58 9e-09
Alignment gi|NP_666045.1| beta-galactoside alpha-2,6-sialyltransferase 1 ... 58 1e-08
Alignment gi|NP_001155246.1| CMP-N-acetylneuraminate-beta-1,4-galactoside... 58 1e-08
>ref|NP_036158.3| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Mus
musculus].
Length = 335
Score = 371 bits (952), Expect = e-103
Identities = 189/240 (78%), Positives = 194/240 (80%), Gaps = 3/240 (1%)
Frame = +3
Query: 225 MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPXXXXXXXXXXXTGXXXXXXXXXX 404
MKTL+RHGLAVCL LTTMCTSLLLVYSSLG QKERPP
Sbjct: 1 MKTLMRHGLAVCLVLTTMCTSLLLVYSSLGSQKERPPQQQQQQQQQQQAATATGSTQLVE 60
Query: 405 XXXXXXXXXXXX---LEGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVI 575
LEGYLGVADHKPLKMHC+DCALVTSSGHLLRS QGP ID+TECVI
Sbjct: 61 SSPQPRRTAPAGPRQLEGYLGVADHKPLKMHCKDCALVTSSGHLLRSQQGPHIDQTECVI 120
Query: 576 RMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDG 755
RMNDAPTRGYG DVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDG
Sbjct: 121 RMNDAPTRGYGLDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDG 180
Query: 756 KGQVYNNLQLLSQVLPRLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
KGQ YNNLQLLSQVLPRLKAFMITRH+MLQFDELFK+ETGKDRKISNTWLSTGW MTIA
Sbjct: 181 KGQAYNNLQLLSQVLPRLKAFMITRHRMLQFDELFKQETGKDRKISNTWLSTGWFTMTIA 240
>ref|NP_001020482.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform
3 [Mus musculus].
Length = 313
Score = 165 bits (418), Expect = 4e-41
Identities = 76/162 (46%), Positives = 110/162 (67%)
Frame = +3
Query: 450 YLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRT 629
Y + +K L C C ++TSS HLL + GP+I++ EC IRMNDAPT GY DVGN+T
Sbjct: 72 YFPILGNKTLPSRCNQCVIITSSSHLLGTKLGPEIERAECTIRMNDAPTSGYSADVGNKT 131
Query: 630 SLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLPRL 809
+ RV+AHSS+ R+LR + +N + TVFIFWGP + M++ +G + +Q + P +
Sbjct: 132 TFRVVAHSSVFRVLRKPQEFVNRTPETVFIFWGPPNKMQKP-QGSLLRVIQRAGLMFPNM 190
Query: 810 KAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
+A+ ++ +M QFD+LF+ ETGKDR+ S++WLSTGW M IA
Sbjct: 191 EAYAVSPARMQQFDDLFRGETGKDREKSHSWLSTGWFTMVIA 232
>ref|NP_001020481.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform
2 [Mus musculus].
Length = 299
Score = 165 bits (418), Expect = 4e-41
Identities = 76/162 (46%), Positives = 110/162 (67%)
Frame = +3
Query: 450 YLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRT 629
Y + +K L C C ++TSS HLL + GP+I++ EC IRMNDAPT GY DVGN+T
Sbjct: 58 YFPILGNKTLPSRCNQCVIITSSSHLLGTKLGPEIERAECTIRMNDAPTSGYSADVGNKT 117
Query: 630 SLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLPRL 809
+ RV+AHSS+ R+LR + +N + TVFIFWGP + M++ +G + +Q + P +
Sbjct: 118 TFRVVAHSSVFRVLRKPQEFVNRTPETVFIFWGPPNKMQKP-QGSLLRVIQRAGLMFPNM 176
Query: 810 KAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
+A+ ++ +M QFD+LF+ ETGKDR+ S++WLSTGW M IA
Sbjct: 177 EAYAVSPARMQQFDDLFRGETGKDREKSHSWLSTGWFTMVIA 218
>ref|NP_058669.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform
1 [Mus musculus].
Length = 333
Score = 165 bits (418), Expect = 4e-41
Identities = 76/162 (46%), Positives = 110/162 (67%)
Frame = +3
Query: 450 YLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRT 629
Y + +K L C C ++TSS HLL + GP+I++ EC IRMNDAPT GY DVGN+T
Sbjct: 92 YFPILGNKTLPSRCNQCVIITSSSHLLGTKLGPEIERAECTIRMNDAPTSGYSADVGNKT 151
Query: 630 SLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLPRL 809
+ RV+AHSS+ R+LR + +N + TVFIFWGP + M++ +G + +Q + P +
Sbjct: 152 TFRVVAHSSVFRVLRKPQEFVNRTPETVFIFWGPPNKMQKP-QGSLLRVIQRAGLMFPNM 210
Query: 810 KAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
+A+ ++ +M QFD+LF+ ETGKDR+ S++WLSTGW M IA
Sbjct: 211 EAYAVSPARMQQFDDLFRGETGKDREKSHSWLSTGWFTMVIA 252
>ref|NP_035502.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Mus
musculus].
Length = 305
Score = 142 bits (357), Expect = 5e-34
Identities = 64/163 (39%), Positives = 100/163 (61%)
Frame = +3
Query: 447 GYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNR 626
GY+ V +PL+++C CA+V++SG ++ G +ID C+ RMN+APT+G+ DVG
Sbjct: 63 GYINVRTQEPLQLNCNHCAIVSNSGQMVGQKVGEEIDHASCIWRMNNAPTKGFEEDVGYM 122
Query: 627 TSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLPR 806
T +RV++H+S+ +L+N + T+++ WGP MR+DG G VYN L+ P
Sbjct: 123 TMVRVVSHTSVPLLLKNPDYFFKEASRTIYVIWGPFRNMRKDGNGIVYNMLKKTVDAYPD 182
Query: 807 LKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
+ ++ T +M D +FK ETGKDR S ++LSTGW +A
Sbjct: 183 AQIYVTTEQQMTHCDRVFKDETGKDRVQSGSYLSTGWFTFILA 225
>ref|NP_035503.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase
[Mus musculus].
Length = 302
Score = 139 bits (351), Expect = 2e-33
Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Frame = +3
Query: 447 GYLGVADHKPL-KMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
GY V D KPL + C CA+V+SSG +L S G QID ECV+RMN APT G+ DVG
Sbjct: 58 GYSSVPDGKPLIRELCHSCAVVSSSGQMLGSGLGAQIDGAECVLRMNQAPTVGFEEDVGQ 117
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLP 803
R++LRVI+H+S+ +LRN ++ T+++ WG +M R G+ Y L L+++ P
Sbjct: 118 RSTLRVISHTSVPLLLRNYSHYFQHARDTLYVVWGQGRHMDRVLGGRTYRTLLQLTRMYP 177
Query: 804 RLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
L+ + T M D++F+ ETGK+R+ S ++LSTGW M +A
Sbjct: 178 GLQVYTFTERMMAYCDQIFQDETGKNRRQSGSFLSTGWFTMILA 221
>ref|NP_766417.1| beta-galactoside alpha-2,6-sialyltransferase 2 [Mus musculus].
Length = 438
Score = 63.5 bits (153), Expect = 2e-10
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +3
Query: 498 CALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRN 677
CA+V S+G +L S G +ID + V+R N APTRGY +DVGN+T++R+I + Q +
Sbjct: 291 CAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTVRII---NSQILANP 347
Query: 678 RHDLLN--VSQGTVFIFWGPSSY 740
H ++ + + + + W P+ Y
Sbjct: 348 SHHFIDSALYKDVILVAWDPAPY 370
>ref|NP_033203.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Mus musculus].
Length = 337
Score = 58.2 bits (139), Expect = 9e-09
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = +3
Query: 489 CRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRI 668
CR CA+V +SG+L S GP+ID + V+RMN APT G+ DVG+RT+ ++ S + +
Sbjct: 136 CRRCAVVGNSGNLKDSSYGPEIDSHDFVLRMNKAPTVGFEADVGSRTTHHLVYPESFREL 195
Query: 669 LRN 677
N
Sbjct: 196 GEN 198
>ref|NP_666045.1| beta-galactoside alpha-2,6-sialyltransferase 1 [Mus musculus].
Length = 403
Score = 57.8 bits (138), Expect = 1e-08
Identities = 34/99 (34%), Positives = 53/99 (53%)
Frame = +3
Query: 444 EGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
EGYL + + CA+V+S+G L S G +ID + V+R N APT + +DVG
Sbjct: 163 EGYLPKENFRTKAGPWHKCAVVSSAGSLKNSQLGREIDNHDAVLRFNGAPTDNFQQDVGT 222
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSY 740
+T++R++ + R D L ++G + I W PS Y
Sbjct: 223 KTTIRLVNSQLVTTEKRFLKDSL-YTEG-ILILWDPSVY 259
>ref|NP_001155246.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase [Mus musculus].
Length = 374
Score = 57.8 bits (138), Expect = 1e-08
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 483 MHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRV-IAHSSI 659
+HCR C +V + G L G +ID + VIR+N AP +G+ RDVG++T+LR+ ++
Sbjct: 154 LHCRRCIIVGNGGVLANKSLGSRIDDYDIVIRLNSAPVKGFERDVGSKTTLRITYPEGAM 213
Query: 660 QRILRNRHDLLNVSQG 707
QR + D L V G
Sbjct: 214 QRPEQYERDSLFVLAG 229
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,393,755
Number of extensions: 681601
Number of successful extensions: 3763
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3659
Number of HSP's successfully gapped: 16
Length of query: 311
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 210
Effective length of database: 12,583,923
Effective search space: 2642623830
Effective search space used: 2642623830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008824
(935 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112227.1| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 379 e-105
Alignment gi|NP_038471.2| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 169 3e-42
Alignment gi|NP_694541.2| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 144 1e-34
Alignment gi|NP_778204.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1... 139 3e-33
Alignment gi|NP_001153483.1| alpha-N-acetylgalactosaminide alpha-2,6-sial... 129 4e-30
Alignment gi|NP_778205.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1... 114 2e-25
Alignment gi|NP_001135824.1| beta-galactoside alpha-2,6-sialyltransferase... 67 2e-11
Alignment gi|NP_001135823.1| beta-galactoside alpha-2,6-sialyltransferase... 67 2e-11
Alignment gi|NP_115917.1| beta-galactoside alpha-2,6-sialyltransferase 2 ... 67 2e-11
Alignment gi|NP_775479.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 58 1e-08
>ref|NP_112227.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Homo
sapiens].
Length = 336
Score = 379 bits (973), Expect = e-105
Identities = 194/241 (80%), Positives = 198/241 (82%), Gaps = 4/241 (1%)
Frame = +3
Query: 225 MKTLVRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPXXXXXXXXXXX----TGXXXXXX 392
MKTL+RHGLAVCLALTTMCTSLLLVYSSLGGQKERPP TG
Sbjct: 1 MKTLMRHGLAVCLALTTMCTSLLLVYSSLGGQKERPPQQQQQQQQQQQQASATGSSQPAA 60
Query: 393 XXXXXXXXXXXXXXXXLEGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECV 572
L+GYLGVADHKPLKMHCRDCALVTSSGHLL S QG QID+TECV
Sbjct: 61 ESSTQQRPGVPAGPRPLDGYLGVADHKPLKMHCRDCALVTSSGHLLHSRQGSQIDQTECV 120
Query: 573 IRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRD 752
IRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRD
Sbjct: 121 IRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRD 180
Query: 753 GKGQVYNNLQLLSQVLPRLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTI 932
GKGQVYNNL LLSQVLPRLKAFMITRHKMLQFDELFK+ETGKDRKISNTWLSTGW MTI
Sbjct: 181 GKGQVYNNLHLLSQVLPRLKAFMITRHKMLQFDELFKQETGKDRKISNTWLSTGWFTMTI 240
Query: 933 A 935
A
Sbjct: 241 A 241
>ref|NP_038471.2| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Homo
sapiens].
Length = 333
Score = 169 bits (429), Expect = 3e-42
Identities = 79/164 (48%), Positives = 113/164 (68%)
Frame = +3
Query: 444 EGYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
+GY+ + +K L C C +V+SS HLL + GP+I++ EC IRMNDAPT GY DVGN
Sbjct: 90 DGYVPILGNKTLPSRCHQCVIVSSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGN 149
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLP 803
+T+ RV+AHSS+ R+LR + +N + TVFIFWGP S M++ +G + +Q V P
Sbjct: 150 KTTYRVVAHSSVFRVLRRPQEFVNRTPETVFIFWGPPSKMQKP-QGSLVRVIQRAGLVFP 208
Query: 804 RLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
++A+ ++ +M QFD+LF+ ETGKDR+ S++WLSTGW M IA
Sbjct: 209 NMEAYAVSPGRMRQFDDLFRGETGKDREKSHSWLSTGWFTMVIA 252
>ref|NP_694541.2| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 isoform
1 [Homo sapiens].
Length = 305
Score = 144 bits (363), Expect = 1e-34
Identities = 65/163 (39%), Positives = 103/163 (63%)
Frame = +3
Query: 447 GYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNR 626
GY+ V +PL++ C CA+V++SG ++ G +ID++ C+ RMN+APT+GY DVG
Sbjct: 63 GYINVKTQEPLQLDCDLCAIVSNSGQMVGQKVGNEIDRSSCIWRMNNAPTKGYEEDVGRM 122
Query: 627 TSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLPR 806
T +RV++H+S+ +L+N + T+++ WGP MR+DG G VYN L+ + P
Sbjct: 123 TMIRVVSHTSVPLLLKNPDYFFKEANTTIYVIWGPFRNMRKDGNGIVYNMLKKTVGIYPN 182
Query: 807 LKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
+ ++ T +M D +FK+ETGKDR S ++LSTGW +A
Sbjct: 183 AQIYVTTEKRMSYCDGVFKKETGKDRVQSGSYLSTGWFTFLLA 225
>ref|NP_778204.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase
isoform a [Homo sapiens].
Length = 302
Score = 139 bits (351), Expect = 3e-33
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Frame = +3
Query: 447 GYLGVADHKPL-KMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGN 623
GY V D KPL + CR CA+V+SSG +L S G +ID ECV RMN APT G+ DVG
Sbjct: 58 GYSSVPDGKPLVREPCRSCAVVSSSGQMLGSGLGAEIDSAECVFRMNQAPTVGFEADVGQ 117
Query: 624 RTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLP 803
R++LRV++H+S+ +LRN ++ T+++ WG +M R G+ Y L L+++ P
Sbjct: 118 RSTLRVVSHTSVPLLLRNYSHYFQKARDTLYMVWGQGRHMDRVLGGRTYRTLLQLTRMYP 177
Query: 804 RLKAFMITRHKMLQFDELFKRETGKDRKISNTWLSTGWVHMTIA 935
L+ + T M D++F+ ETGK+R+ S ++LSTGW M +A
Sbjct: 178 GLQVYTFTERMMAYCDQIFQDETGKNRRQSGSFLSTGWFTMILA 221
>ref|NP_001153483.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 isoform
2 [Homo sapiens].
Length = 210
Score = 129 bits (324), Expect = 4e-30
Identities = 57/145 (39%), Positives = 92/145 (63%)
Frame = +3
Query: 447 GYLGVADHKPLKMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNR 626
GY+ V +PL++ C CA+V++SG ++ G +ID++ C+ RMN+APT+GY DVG
Sbjct: 63 GYINVKTQEPLQLDCDLCAIVSNSGQMVGQKVGNEIDRSSCIWRMNNAPTKGYEEDVGRM 122
Query: 627 TSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLPR 806
T +RV++H+S+ +L+N + T+++ WGP MR+DG G VYN L+ + P
Sbjct: 123 TMIRVVSHTSVPLLLKNPDYFFKEANTTIYVIWGPFRNMRKDGNGIVYNMLKKTVGIYPN 182
Query: 807 LKAFMITRHKMLQFDELFKRETGKD 881
+ ++ T +M D +FK+ETGKD
Sbjct: 183 AQIYVTTEKRMSYCDGVFKKETGKD 207
>ref|NP_778205.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase
isoform b [Homo sapiens].
Length = 218
Score = 114 bits (284), Expect = 2e-25
Identities = 55/137 (40%), Positives = 85/137 (62%)
Frame = +3
Query: 525 LLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQ 704
+L S G +ID ECV RMN APT G+ DVG R++LRV++H+S+ +LRN ++
Sbjct: 1 MLGSGLGAEIDSAECVFRMNQAPTVGFEADVGQRSTLRVVSHTSVPLLLRNYSHYFQKAR 60
Query: 705 GTVFIFWGPSSYMRRDGKGQVYNNLQLLSQVLPRLKAFMITRHKMLQFDELFKRETGKDR 884
T+++ WG +M R G+ Y L L+++ P L+ + T M D++F+ ETGK+R
Sbjct: 61 DTLYMVWGQGRHMDRVLGGRTYRTLLQLTRMYPGLQVYTFTERMMAYCDQIFQDETGKNR 120
Query: 885 KISNTWLSTGWVHMTIA 935
+ S ++LSTGW M +A
Sbjct: 121 RQSGSFLSTGWFTMILA 137
>ref|NP_001135824.1| beta-galactoside alpha-2,6-sialyltransferase 2 isoform b [Homo
sapiens].
Length = 466
Score = 67.0 bits (162), Expect = 2e-11
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = +3
Query: 492 RDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRIL 671
R CA+V S+G +L S G +ID + V+R N APTRGY +DVGN+T++R+I + Q +
Sbjct: 294 RSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRII---NSQILT 350
Query: 672 RNRHDLLNVS--QGTVFIFWGPSSY 740
H ++ S + + + W P+ Y
Sbjct: 351 NPSHHFIDSSLYKDVILVAWDPAPY 375
>ref|NP_001135823.1| beta-galactoside alpha-2,6-sialyltransferase 2 isoform a [Homo
sapiens].
Length = 529
Score = 67.0 bits (162), Expect = 2e-11
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = +3
Query: 492 RDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRIL 671
R CA+V S+G +L S G +ID + V+R N APTRGY +DVGN+T++R+I + Q +
Sbjct: 294 RSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRII---NSQILT 350
Query: 672 RNRHDLLNVS--QGTVFIFWGPSSY 740
H ++ S + + + W P+ Y
Sbjct: 351 NPSHHFIDSSLYKDVILVAWDPAPY 375
>ref|NP_115917.1| beta-galactoside alpha-2,6-sialyltransferase 2 isoform a [Homo
sapiens].
Length = 529
Score = 67.0 bits (162), Expect = 2e-11
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = +3
Query: 492 RDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRIL 671
R CA+V S+G +L S G +ID + V+R N APTRGY +DVGN+T++R+I + Q +
Sbjct: 294 RSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRII---NSQILT 350
Query: 672 RNRHDLLNVS--QGTVFIFWGPSSY 740
H ++ S + + + W P+ Y
Sbjct: 351 NPSHHFIDSSLYKDVILVAWDPAPY 375
>ref|NP_775479.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Homo sapiens].
Length = 340
Score = 57.8 bits (138), Expect = 1e-08
Identities = 31/79 (39%), Positives = 47/79 (59%)
Frame = +3
Query: 489 CRDCALVTSSGHLLRSHQGPQIDKTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRI 668
CR CA+V +SG+L S GP+ID + V+RMN APT G+ DVG +T+ ++ S R
Sbjct: 139 CRRCAVVGNSGNLRESSYGPEIDSHDFVLRMNKAPTAGFEADVGTKTTHHLVYPESF-RE 197
Query: 669 LRNRHDLLNVSQGTVFIFW 725
L + ++ V T+ + W
Sbjct: 198 LGDNVSMILVPFKTIDLEW 216
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,282,606
Number of extensions: 821934
Number of successful extensions: 4858
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 4710
Number of HSP's successfully gapped: 24
Length of query: 311
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,934,836
Effective search space: 3121380724
Effective search space used: 3121380724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008824
(935 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 452 e-124
>Sscrofa_Chr06
|| Length = 157765593
Score = 452 bits (228), Expect = e-124
Identities = 237/239 (99%), Gaps = 2/239 (0%)
Strand = Plus / Minus
Query: 1 gatcgctgagacactacgagggtccggttcagttttaattctgtctctaatctgcaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126451349 gatcgctgagacactacgagggtccggttcagttttaattctgtctctaatctgcaacag 126451290
Query: 61 cagtgcttcctgggtcccgcggctcccctgcctactcagccgccgctggccaccgggcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126451289 cagtgcttcctgggtcccgcggctcccctgcctactcagccgccgctggccaccgggcga 126451230
Query: 121 aaatcagagccgcctccgccccatcacccaccatggaaaccctccaagaaaaagtgaccc 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126451229 aaatc--agccgcctccgccccatcacccaccatggaaaccctccaagaaaaagtgaccc 126451172
Query: 181 cggacgcgtgtgcctgaggattccgcacaaaagaggtgcccaaaatgaagaccctggtg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126451171 cggacgcgtgtgcctgaggattccgcacaaaagaggtgcccaaaatgaagaccctggtg 126451113
Score = 200 bits (101), Expect = 1e-48
Identities = 104/105 (99%)
Strand = Plus / Minus
Query: 369 actggcagcgcgcagcggtcggcggagagcagccccccgccgcgccccgaaatccccgcg 428
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 126450159 actggcagcgcgcagcggtcggcggagagcagccccccgccgcgccccgaaacccccgcg 126450100
Query: 429 ggaccgcggccgctggagggataccttggcgtggcggaccacaag 473
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126450099 ggaccgcggccgctggagggataccttggcgtggcggaccacaag 126450055
Score = 190 bits (96), Expect = 9e-46
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 239 gcgccatggtctggcagtgtgtttagcgctcaccaccatgtgcaccagcttgttgctcgt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126450292 gcgccatggtctggcagtgtgtttagcgctcaccaccatgtgcaccagcttgttgctcgt 126450233
Query: 299 atacagcagcctcggcggccagaaggagcggccccc 334
||||||||||||||||||||||||||||||||||||
Sbjct: 126450232 atacagcagcctcggcggccagaaggagcggccccc 126450197
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,639,674
Number of extensions: 78
Number of successful extensions: 78
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 3
Length of query: 935
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 914
Effective length of database: 2,808,413,156
Effective search space: 2566889624584
Effective search space used: 2566889624584
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)