Animal-Genome cDNA 20110601C-008833


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008833
         (1295 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001192872.1| sodium-coupled neutral amino acid transporte...    66   6e-11
Alignment   gi|XP_002687366.1| PREDICTED: solute carrier family 38, member ...    66   6e-11

>ref|NP_001192872.1| sodium-coupled neutral amino acid transporter 4 [Bos taurus].
          Length = 547

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 33/52 (63%), Positives = 33/52 (63%)
 Frame = +2

Query: 725 LLQIRTSVTTLLFPKRPFSWIRHFXXXXXXXXXXXXXXXXXPTIKYIFGFIG 880
           L  IRTSVTTLLFPKRPFSWIRHF                 PTIKYIFGFIG
Sbjct: 431 LFPIRTSVTTLLFPKRPFSWIRHFLIAAIIIALNNVLVILVPTIKYIFGFIG 482


>ref|XP_002687366.1| PREDICTED: solute carrier family 38, member 4 [Bos taurus].
          Length = 547

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 33/52 (63%), Positives = 33/52 (63%)
 Frame = +2

Query: 725 LLQIRTSVTTLLFPKRPFSWIRHFXXXXXXXXXXXXXXXXXPTIKYIFGFIG 880
           L  IRTSVTTLLFPKRPFSWIRHF                 PTIKYIFGFIG
Sbjct: 431 LFPIRTSVTTLLFPKRPFSWIRHFLIAAIIIALNNVLVILVPTIKYIFGFIG 482


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,096,397
Number of extensions: 844743
Number of successful extensions: 1735
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1732
Number of HSP's successfully gapped: 2
Length of query: 431
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 326
Effective length of database: 14,207,134
Effective search space: 4631525684
Effective search space used: 4631525684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008833
         (1295 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_864042.1| PREDICTED: similar to solute carrier family 38,...    66   6e-11
Alignment   gi|XP_864025.1| PREDICTED: similar to solute carrier family 38,...    66   6e-11
Alignment   gi|XP_864000.1| PREDICTED: similar to solute carrier family 38,...    66   6e-11
Alignment   gi|XP_863986.1| PREDICTED: similar to solute carrier family 38,...    66   6e-11
Alignment   gi|XP_543721.2| PREDICTED: similar to solute carrier family 38,...    66   6e-11

>ref|XP_864042.1| PREDICTED: similar to solute carrier family 38, member 4 isoform 6
           [Canis familiaris].
          Length = 517

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 33/52 (63%), Positives = 33/52 (63%)
 Frame = +2

Query: 725 LLQIRTSVTTLLFPKRPFSWIRHFXXXXXXXXXXXXXXXXXPTIKYIFGFIG 880
           L  IRTSVTTLLFPKRPFSWIRHF                 PTIKYIFGFIG
Sbjct: 401 LFPIRTSVTTLLFPKRPFSWIRHFLIAAILLALNNVLVILVPTIKYIFGFIG 452


>ref|XP_864025.1| PREDICTED: similar to solute carrier family 38, member 4 isoform 5
           [Canis familiaris].
          Length = 504

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 33/52 (63%), Positives = 33/52 (63%)
 Frame = +2

Query: 725 LLQIRTSVTTLLFPKRPFSWIRHFXXXXXXXXXXXXXXXXXPTIKYIFGFIG 880
           L  IRTSVTTLLFPKRPFSWIRHF                 PTIKYIFGFIG
Sbjct: 388 LFPIRTSVTTLLFPKRPFSWIRHFLIAAILLALNNVLVILVPTIKYIFGFIG 439


>ref|XP_864000.1| PREDICTED: similar to solute carrier family 38, member 4 isoform 4
           [Canis familiaris].
          Length = 501

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 33/52 (63%), Positives = 33/52 (63%)
 Frame = +2

Query: 725 LLQIRTSVTTLLFPKRPFSWIRHFXXXXXXXXXXXXXXXXXPTIKYIFGFIG 880
           L  IRTSVTTLLFPKRPFSWIRHF                 PTIKYIFGFIG
Sbjct: 385 LFPIRTSVTTLLFPKRPFSWIRHFLIAAILLALNNVLVILVPTIKYIFGFIG 436


>ref|XP_863986.1| PREDICTED: similar to solute carrier family 38, member 4 isoform 3
           [Canis familiaris].
          Length = 515

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 33/52 (63%), Positives = 33/52 (63%)
 Frame = +2

Query: 725 LLQIRTSVTTLLFPKRPFSWIRHFXXXXXXXXXXXXXXXXXPTIKYIFGFIG 880
           L  IRTSVTTLLFPKRPFSWIRHF                 PTIKYIFGFIG
Sbjct: 399 LFPIRTSVTTLLFPKRPFSWIRHFLIAAILLALNNVLVILVPTIKYIFGFIG 450


>ref|XP_543721.2| PREDICTED: similar to solute carrier family 38, member 4 isoform 1
           [Canis familiaris].
          Length = 548

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 33/52 (63%), Positives = 33/52 (63%)
 Frame = +2

Query: 725 LLQIRTSVTTLLFPKRPFSWIRHFXXXXXXXXXXXXXXXXXPTIKYIFGFIG 880
           L  IRTSVTTLLFPKRPFSWIRHF                 PTIKYIFGFIG
Sbjct: 432 LFPIRTSVTTLLFPKRPFSWIRHFLIAAILLALNNVLVILVPTIKYIFGFIG 483


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,982,671
Number of extensions: 763296
Number of successful extensions: 1880
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1873
Number of HSP's successfully gapped: 5
Length of query: 431
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 325
Effective length of database: 15,340,888
Effective search space: 4985788600
Effective search space used: 4985788600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008833
         (1295 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003355678.1| PREDICTED: sodium-coupled neutral amino acid...    67   2e-11

>ref|XP_003355678.1| PREDICTED: sodium-coupled neutral amino acid transporter 4 [Sus
           scrofa].
          Length = 437

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 35/70 (50%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
 Frame = +2

Query: 725 LLQIRTSVTTLLFPKRPFSWIRHFXXXXXXXXXXXXXXXXXPTIKYIFGFIGKCQTS--F 898
           L  IRTSVTTLLFPKRPFSWIRHF                 PTIKYIFGFIG    +   
Sbjct: 321 LFPIRTSVTTLLFPKRPFSWIRHFLIAAIVIALNNVLVILVPTIKYIFGFIGASSATMLI 380

Query: 899 YLVNSSGYLR 928
           +++ ++ YL+
Sbjct: 381 FILPAAFYLK 390


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,128,745
Number of extensions: 692782
Number of successful extensions: 1093
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 329
Effective length of database: 8,804,438
Effective search space: 2896660102
Effective search space used: 2896660102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008833
         (1295 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_081328.2| sodium-coupled neutral amino acid transporter 4...    60   3e-09

>ref|NP_081328.2| sodium-coupled neutral amino acid transporter 4 [Mus musculus].
          Length = 547

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
 Frame = +2

Query: 725 LLQIRTSVTTLLFPKRPFSWIRHFXXXXXXXXXXXXXXXXXPTIKYIFGFIGKCQTS--F 898
           L  IRTSV TLLFP++PFSW++HF                 PTIKYIFGFIG    +   
Sbjct: 431 LFPIRTSVITLLFPRKPFSWLKHFGIAAIIIALNNILVILVPTIKYIFGFIGASSATMLI 490

Query: 899 YLVNSSGYLR 928
           +++ ++ YL+
Sbjct: 491 FILPAAFYLK 500


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,281,872
Number of extensions: 649131
Number of successful extensions: 1505
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1502
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 327
Effective length of database: 12,493,815
Effective search space: 4085477505
Effective search space used: 4085477505
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008833
         (1295 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001137296.1| sodium-coupled neutral amino acid transporte...    64   3e-10
Alignment   gi|NP_060488.2| sodium-coupled neutral amino acid transporter 4...    64   3e-10

>ref|NP_001137296.1| sodium-coupled neutral amino acid transporter 4 [Homo sapiens].
          Length = 547

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 32/52 (61%), Positives = 32/52 (61%)
 Frame = +2

Query: 725 LLQIRTSVTTLLFPKRPFSWIRHFXXXXXXXXXXXXXXXXXPTIKYIFGFIG 880
           L  IRTSV TLLFPKRPFSWIRHF                 PTIKYIFGFIG
Sbjct: 431 LFPIRTSVITLLFPKRPFSWIRHFLIAAVLIALNNVLVILVPTIKYIFGFIG 482


>ref|NP_060488.2| sodium-coupled neutral amino acid transporter 4 [Homo sapiens].
          Length = 547

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 32/52 (61%), Positives = 32/52 (61%)
 Frame = +2

Query: 725 LLQIRTSVTTLLFPKRPFSWIRHFXXXXXXXXXXXXXXXXXPTIKYIFGFIG 880
           L  IRTSV TLLFPKRPFSWIRHF                 PTIKYIFGFIG
Sbjct: 431 LFPIRTSVITLLFPKRPFSWIRHFLIAAVLIALNNVLVILVPTIKYIFGFIG 482


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,383,396
Number of extensions: 751113
Number of successful extensions: 1721
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1717
Number of HSP's successfully gapped: 2
Length of query: 431
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 326
Effective length of database: 14,835,944
Effective search space: 4836517744
Effective search space used: 4836517744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008833
         (1295 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                        1104   0.0  

>Sscrofa_Chr05 
||          Length = 111506441

 Score = 1104 bits (557), Expect = 0.0
 Identities = 604/625 (96%)
 Strand = Plus / Minus

                                                                            
Query: 582      tttaaaattccaacataaaaaccagcttcatgatcccttctgggagaagaatgaagaaca 641
                |||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 80396834 tttaaaattccagcataaaaaccagcttcatgatcccttctgggagaggaacgaagaaca 80396775

                                                                            
Query: 642      aagaacatgctttagagtgatgagaatatttaaaatagtaaataaagtaaaaaacaaagc 701
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 80396774 aagaacatgctttagagtgatgagaatatttaaaatagtaaataaagtcaaaaacaaagc 80396715

                                                                            
Query: 702      agtgaccttacttttgaaccttcttgttgcagattcgtacatcagtgaccactctgttat 761
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80396714 agtgaccttacttttgaaccttcttgttgcagattcgtacatcagtgaccactctgttat 80396655

                                                                            
Query: 762      ttcccaaaagacccttcagctggataagacatttcctaattgcagccatagttattgcac 821
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80396654 ttcccaaaagacccttcagctggataagacatttcctaattgcagccatagttattgcac 80396595

                                                                            
Query: 822      ttaataatgttttggtgatccttgtgccaactataaaatatatctttggattcataggta 881
                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 80396594 ttaataatgttttggtgatccttgtgccaactataaaatacatctttggattcataggta 80396535

                                                                            
Query: 882      agtgtcagacaagcttttacttggtcaactcaagtggatacctccgtaaacagaggacag 941
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80396534 agtgtcagacaagcttttacttggtcaactcaagtggatacctccgtaaacagaggacag 80396475

                                                                            
Query: 942      ggagccagtgatgggaggtcaaaatctcagtccctctcaggctcacagaattcctagtag 1001
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80396474 ggagccagtgatgggaggtcaaaatctcagtccctctcaggctcacagaattcctagtag 80396415

                                                                            
Query: 1002     cccagctgggctccagctggtcacctnnnnnnnnnnnnnnnngcacctcgccaggtgaca 1061
                ||||||||||||||||||||||||||                ||||||||||||||||||
Sbjct: 80396414 cccagctgggctccagctggtcacctcccccgcccccaccccgcacctcgccaggtgaca 80396355

                                                                            
Query: 1062     ctggaagttattcttaggatcagaaacagttagtgctaaagcctaccttataggttgtct 1121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80396354 ctggaagttattcttaggatcagaaacagttagtgctaaagcctaccttataggttgtct 80396295

                                                                            
Query: 1122     agtctagctgcctcttctgacagacaaaacaacttgagccccgtagaagccaagtcataa 1181
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80396294 agtctagctgcctcttctgacagacaaaacaacttgagccccgtagaagccaagtcataa 80396235

                                         
Query: 1182     agcttggactagacccaggatctgc 1206
                |||||||||||||||||||||||||
Sbjct: 80396234 agcttggactagacccaggatctgc 80396210



 Score =  852 bits (430), Expect = 0.0
 Identities = 468/482 (97%), Gaps = 9/482 (1%)
 Strand = Plus / Minus

                                                                            
Query: 4        tattcagtttaattcaacatttattaggtgcctgctgtttgcaagacactacggtagaaa 63
                |||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct: 80397403 tattcagtttaattcagcatttattaagtgcctgctgtgtgcaagacactacagtagaaa 80397344

                                                                            
Query: 64       ctctgaggaatgttaagatcttgttcttttgctttttgtgcatttataatctatacttgg 123
                ||||||||||||||||||||||||||||||||         |||||||||||||||||||
Sbjct: 80397343 ctctgaggaatgttaagatcttgttcttttgc---------atttataatctatacttgg 80397293

                                                                            
Query: 124      gagggaggaaaaagagaaaggaggaaacataaaaagtatcatattttttaaaatattagg 183
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80397292 gagggaggaaaaagagaaaggaggaaacataaaaagtatcatattttttaaaatattagg 80397233

                                                                            
Query: 184      aggcaaaaatgttaaatcaaatgtaaagttaagaaatacctaggttcctaaaaattctgt 243
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80397232 aggcaaaaatgttaaatcaaatgtaaagttaagaaatacctaggttcctaaaaattctgt 80397173

                                                                            
Query: 244      tgacagtcacatgcaggtaaattcagtgcttgcctttaatacttaatccaggctgataag 303
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80397172 tgacagtcacatgcaggtaaattcagtgcttgcctttaatacttaatccaggctgataag 80397113

                                                                            
Query: 304      acatgattagaaatcaacaagggttttaccgtgcctctgtattatagatcttatctgttc 363
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80397112 acatgattagaaatcaacaagggttttaccgtgcctctgtattatagatcttatctgttc 80397053

                                                                            
Query: 364      ttttacctctttctgactgaaattctttttaagaaaaaattctgaaggctgagaaagtga 423
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 80397052 ttttacctctttctgactgagattctttttaagaaaaaattctgaaggctgagaaagtga 80396993

                                                                            
Query: 424      acagaagatagaacaccaaggaaaaatgacacctttccagacatcacacattagcagcga 483
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80396992 acagaagatagaacaccaaggaaaaatgacacctttccagacatcacacattagcagcga 80396933

                  
Query: 484      ac 485
                ||
Sbjct: 80396932 ac 80396931


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,052,604
Number of extensions: 914
Number of successful extensions: 914
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 5
Length of query: 1295
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1274
Effective length of database: 2,808,413,156
Effective search space: 3577918360744
Effective search space used: 3577918360744
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)