Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008835
(2114 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039606.2| complement component 8, beta polypeptide [Bo... 1046 0.0
Alignment gi|NP_001039750.1| complement component C8 alpha chain [Bos tau... 342 8e-94
Alignment gi|NP_001039444.1| complement component C6 precursor [Bos tauru... 295 1e-79
Alignment gi|NP_001039431.1| complement component C7 precursor [Bos tauru... 253 5e-67
Alignment gi|NP_001030441.1| complement component C9 precursor [Bos tauru... 237 3e-62
Alignment gi|NP_001179466.1| hemicentin-1 [Bos taurus]. 69 2e-11
Alignment gi|XP_002694295.1| PREDICTED: hemicentin 1 [Bos taurus]. 69 2e-11
Alignment gi|NP_777131.1| SCO-spondin precursor [Bos taurus]. 64 7e-10
Alignment gi|NP_789861.1| thrombospondin-2 precursor [Bos taurus]. 60 8e-09
Alignment gi|XP_002696487.1| PREDICTED: sema domain, seven thrombospondin... 59 2e-08
>ref|NP_001039606.2| complement component 8, beta polypeptide [Bos taurus].
Length = 590
Score = 1046 bits (2705), Expect = 0.0
Identities = 491/590 (83%), Positives = 528/590 (89%)
Frame = +1
Query: 67 MKTSGTWAWRMPAKLFLLCAALGCLSLPGSRGERPHSLESNAVNESLGKSRQTRSVDVTL 246
MKTS TWAWR+P +LFLLCAALG S+P SRGERP SL SNAVNESL K+RQTRSVDVT
Sbjct: 1 MKTSRTWAWRVPVELFLLCAALGSFSVPSSRGERPPSLGSNAVNESLAKTRQTRSVDVTP 60
Query: 247 TPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRSQV 426
PIDCELSSWSSWTTCDPCQKKRYRHA L+RPSQFHGE C+FSDKEVEDCVSNRPCRSQV
Sbjct: 61 LPIDCELSSWSSWTTCDPCQKKRYRHAYLIRPSQFHGEQCNFSDKEVEDCVSNRPCRSQV 120
Query: 427 RCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQYWAIGSLASGIN 606
RCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANC++ YKKCQQEM+QYWAIGSLASGIN
Sbjct: 121 RCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCRKTYKKCQQEMEQYWAIGSLASGIN 180
Query: 607 LFTNNLEGPVLDHRYYAGACSPHYILNTRFRKPYNVENFNPQTQGKYDFVLTEYESYSDF 786
LFTNNLEGPVLDHRYYAG CSPHYILNTRFRKPYNVENF PQT+GKYDF LTEYESYSDF
Sbjct: 181 LFTNNLEGPVLDHRYYAGLCSPHYILNTRFRKPYNVENFIPQTRGKYDFTLTEYESYSDF 240
Query: 787 EQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKRFSHTKSTFLHARSDLE 966
E NVT A +FE G SS S+ G+ FISR +RFSHTKS FLHARSDLE
Sbjct: 241 EHNVTGTAISRSSFSLGFKIAGIFELGYSSMSNIGQHFISRIRRFSHTKSKFLHARSDLE 300
Query: 967 VARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGVYEYTLIM 1146
VA YKLK+RNLMLH+EFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGG+YEYTLIM
Sbjct: 301 VAHYKLKTRNLMLHHEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGIYEYTLIM 360
Query: 1147 NKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCKDILNEIKDRNKRSSMV 1326
NKEAM+R DYSLK++H CA+H FKIG AI VY+KLGVS KC DILNEIKDRNK+ SMV
Sbjct: 361 NKEAMDRGDYSLKNIHDCAKHDFKIGAAITSVYLKLGVSEAKCSDILNEIKDRNKKDSMV 420
Query: 1327 NDLVVLVRGGASEHITALAYKDLPTADLMQEWGDAVQYNPDIIKIKAEPLYELVTAADFA 1506
DLVVLVRGGASE++TALAYK+LPTADLMQEWGDAVQYNPDIIK+K PLYELVTA DFA
Sbjct: 421 KDLVVLVRGGASEYVTALAYKELPTADLMQEWGDAVQYNPDIIKVKVMPLYELVTATDFA 480
Query: 1507 YSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRK 1686
YSSTVKQNMK+ALEEF+KE+ SC CAPCQGNGVPVLK +RC+CICPAGFQGSACEVT+RK
Sbjct: 481 YSSTVKQNMKKALEEFQKEVDSCQCAPCQGNGVPVLKGTRCECICPAGFQGSACEVTHRK 540
Query: 1687 NVPIDGKWNCWSDWSPCSGGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
NVPIDGKWNCWS+WSPCSGG KTR+RQC NPPP NGG+PC GPAS+TLNC
Sbjct: 541 NVPIDGKWNCWSNWSPCSGGHKTRQRQCTNPPPGNGGNPCSGPASETLNC 590
>ref|NP_001039750.1| complement component C8 alpha chain [Bos taurus].
Length = 589
Score = 342 bits (877), Expect = 8e-94
Identities = 188/569 (33%), Positives = 286/569 (50%), Gaps = 29/569 (5%)
Frame = +1
Query: 217 RQTRSVD-VTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVED 393
R +R+V T T + C+L +W+ WT C PCQ K+YR+ SLL+P++F G C + +
Sbjct: 27 RVSRAVQSFTPTAVSCQLDNWAEWTDCFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQAS 86
Query: 394 CVSNRPCRSQVRC-EGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCK--RIYKKCQQEM 564
C S C SQ +C + F C +TGRC+ R L+CNGD DC D SDE +C+ RI + +
Sbjct: 87 CHSPTACLSQAQCGQDFQCKETGRCLKRHLVCNGDKDCLDGSDEDDCEDVRILENDCSQY 146
Query: 565 DQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACSPHYILNTR----------------- 693
D A G N+ T V D RYY G C Y R
Sbjct: 147 DPIPGSEKAALGYNILTQEEAQHVYDARYYGGQCETVYNGEWRELQYDPACERLYYGDDD 206
Query: 694 --FRKPYNVENFNPQTQGKYDFVLTEYESYSDF---EQNVTTAAXXXXXXXXXXXXXXMF 858
FRKPYN ++ + Q Y +D +N + +
Sbjct: 207 KYFRKPYNFLKYHFEAQADTKISSEIYNDANDLLTKVKNDKSVSSGLTIGVGIRGVPVTV 266
Query: 859 EFGISSTSDKGKRFISRTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQL 1038
G+S + D F+ + ++ K +F+ + ++ A +K++ N++L LQ + +L
Sbjct: 267 TAGVSMSQDAA--FLKKLSKYHEKKYSFMRIFTKVQTAHFKMRRENIVLDEGMLQSLMEL 324
Query: 1039 PLEYSYGEYRDLFRDFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFK 1218
P Y YG Y D+GTHYIT +GGVYEY L++N+E ME A + ++ C G
Sbjct: 325 PERYHYGMYAKFINDYGTHYITSGSMGGVYEYILVLNREKMETAGVTSAEIQKC--FGVS 382
Query: 1219 IGVAIE---EVYIKLGVSVHKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAYK 1389
+G+ E + IK S+ CK + N+++ V D + VRG +S +L
Sbjct: 383 LGIEYEYSEAIQIKGSSSLGPCKKSGDGKLTENEKAMGVEDFISRVRGDSSGWGGSLTQD 442
Query: 1390 DLPTADLMQEWGDAVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEIS 1569
+ + WG +++YNP +I + +P++E++ + T +QN++RAL+++ E +
Sbjct: 443 S--SLVTYRSWGRSLKYNPAVIDFEMKPIHEILQHTNLGSLETKRQNLRRALDKYLMEFN 500
Query: 1570 SCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCSGGR 1749
+C C PC NG P+L+ + C C CP G QG ACE + DG+W+CWS WS C G
Sbjct: 501 ACRCGPCFNNGEPILEGTSCKCQCPVGHQGLACEQMQSEGAQADGRWSCWSSWSACRSGT 560
Query: 1750 KTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
+ RRR+CNNP PQNGG+ C G +T C
Sbjct: 561 QERRRECNNPAPQNGGASCPGHRVQTQAC 589
>ref|NP_001039444.1| complement component C6 precursor [Bos taurus].
Length = 932
Score = 295 bits (755), Expect = 1e-79
Identities = 167/554 (30%), Positives = 272/554 (49%), Gaps = 14/554 (2%)
Frame = +1
Query: 217 RQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDC 396
+++R + PI+C L + W+ CDPC +KR++ S+LRPSQF G+PC + C
Sbjct: 68 QESRECNWQTCPINCRLGDYGPWSDCDPCVQKRFKVRSILRPSQFGGQPCTEPLMTFQPC 127
Query: 397 VSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQY 573
+ ++ C+ ++ C+ +GRCI +L CNG+NDCGD SDE NC R C + +
Sbjct: 128 IPSKLCKIEEIDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRKKTVCSRSHNPI 187
Query: 574 WAIGSLASGINLFTNNLEGPVLDHRYYAGACSPHYILNTRFRKPY----NVENFNPQTQG 741
+ + G + G VLD+ + G C + ++R PY N+EN N + Q
Sbjct: 188 PGVQLMGMGFHFLAGEPRGEVLDNSFTGGVCRT--VKSSRASNPYRVPANLENVNFEVQT 245
Query: 742 KYDFVLTE-YESYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKR 918
K D + + Y+ E N A + S +S F +
Sbjct: 246 KEDDLEADFYDDLIPLEDNKDQEALGSGLATSSFRVPIFYSSKRSQSSSHSSAFKQAIQA 305
Query: 919 FSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHY 1098
S+F+ ++V + +K+++L L FL+ + LPLEY+ Y +F DFGTHY
Sbjct: 306 SQKKASSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNSALYSRIFDDFGTHY 365
Query: 1099 ITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCK 1278
T LGGVY+ +KE ++ + + ++ C +I +++K H+C
Sbjct: 366 FTSGSLGGVYDLLYQFSKEELKNSGLTQEEAKNC----IRIETKKRFLFVKKTKVEHRC- 420
Query: 1279 DILNEIKDRNKRSSMVND--LVVLVRGGASEHITALAYK---DLPTADLMQEWGDAVQYN 1443
N++ ++ + S M + LV+GG S + ALA++ +P + +W ++V+ N
Sbjct: 421 -TTNKLSEKYEGSFMQGSEKSISLVQGGRSAYAAALAWEKGSPVPEERVFSDWLESVKEN 479
Query: 1444 PDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKES 1623
P +I P+ +LV + + T + N++RA E+ + C CA C +G PVL +
Sbjct: 480 PSVIDFALAPITDLV--RNIPCAVTRRNNLRRAFREYAAKFDPCQCARCPNSGRPVLSGT 537
Query: 1624 RCDCICPAGFQGSACE--VTNRKNVPIDGKWNCWSDWSPCSGG-RKTRRRQCNNPPPQNG 1794
C C+C +G G CE + K+ +DG W CWS WS C R++R R+CNNP PQ G
Sbjct: 538 ECLCVCQSGTYGENCERRSPDYKSNAVDGNWGCWSSWSSCDATYRRSRTRECNNPAPQQG 597
Query: 1795 GSPCLGPASKTLNC 1836
G C G + +C
Sbjct: 598 GKRCEGERRQEEHC 611
>ref|NP_001039431.1| complement component C7 precursor [Bos taurus].
Length = 843
Score = 253 bits (646), Expect = 5e-67
Identities = 172/544 (31%), Positives = 255/544 (46%), Gaps = 14/544 (2%)
Frame = +1
Query: 247 TPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRSQV 426
+PI+C+ S++ W+ C+ C K + R S+ Q+ G C S E + C R C ++
Sbjct: 24 SPINCQWGSYAPWSECNGCTKTQTRRRSIAVYGQYGGHSCVGSAFETQPCQPTRGCPTED 83
Query: 427 RC-EGFVCAQTGRCINRRLLCNGDNDCG-DQSDEANCKRIYKKCQQEMDQYWA-IGSLAS 597
C E F C +G+CI++ L+CNGD+DC D +DE C+ + + D+ I
Sbjct: 84 GCGERFRCF-SGQCISKSLVCNGDSDCEEDGADEDRCEDAESRPACDKDKPPPNIELTGR 142
Query: 598 GINLFTNNLEGPVLDHRYYAGACSPHYILNTR--FRKPYNVENFNPQTQGKYDFVLTEYE 771
G N T VL+ + + G C Y + R +R N+ ++ Q + DF Y
Sbjct: 143 GYNALTGQFRNQVLNTKSFGGQCRKVYSGDGRDFYRLSGNILSYTFQVKINNDFNNEFYN 202
Query: 772 SYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKRFSHTKS-TFLH 948
S + + +T F F SS+S G + S T + KS L
Sbjct: 203 STWAYVKETSTE--------HSSSSKGRFLFFSSSSSSHG--YSSNTNILTKKKSYQLLV 252
Query: 949 ARSDLEVARYKLKSRN-LMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGV 1125
++ +EVA++ + L L F + + LP Y Y YR L +GTHY+ LGG
Sbjct: 253 LQNTVEVAQFINNNPEFLQLAESFWKELSYLPSLYDYSAYRRLIDQYGTHYLQSGSLGGE 312
Query: 1126 YEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCKDILNEIKDR 1305
Y+ M+ E +++ D+ +D CA F+ S KC + +K
Sbjct: 313 YKVIFHMDSEKVKKFDFHSEDKRKCASSHFQF---------LFTSSKQKCTTMEEVLKSV 363
Query: 1306 NKRSSMVNDLVVLVRGGASEHITALAYKDL--PTADLMQ--EWGDAVQYNPDIIKIKAEP 1473
++ + V VRGG S + L+Y DL P + + +W +V P++IK K P
Sbjct: 364 SENEGNLLRGVPFVRGGHSGFLAGLSYLDLNNPAGNKRRYSQWAGSVPDLPEVIKQKLTP 423
Query: 1474 LYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAGF 1653
LYELV A S K +KRA+EE+ E CHC PC G+ ++ S+C C C
Sbjct: 424 LYELVKEVPCA--SVKKLYLKRAIEEYLDEFDPCHCRPCHNGGMATVQGSQCQCYCKPKT 481
Query: 1654 QGSACE---VTNRKNVPIDGKWNCWSDWSPCSGGRKTRRRQCNNPPPQNGGSPCLGPASK 1824
G ACE + + +DG WNCWS W PC G+KTR RQCNNP P GG C+G S+
Sbjct: 482 SGVACEQGVLLGDQAGGVDGGWNCWSSWGPCVQGKKTRSRQCNNPSPSAGGKSCIGETSE 541
Query: 1825 TLNC 1836
T C
Sbjct: 542 TRQC 545
>ref|NP_001030441.1| complement component C9 precursor [Bos taurus].
Length = 548
Score = 237 bits (605), Expect = 3e-62
Identities = 155/521 (29%), Positives = 241/521 (46%), Gaps = 43/521 (8%)
Frame = +1
Query: 241 TLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRS 420
T PIDC +SSWS W+ CDPC K+ +R S+ QF+G C + + + CV C
Sbjct: 35 TPLPIDCRMSSWSEWSKCDPCLKQMFRSRSIEIFGQFNGRKCVDAVGDRQQCVPTEACED 94
Query: 421 QVRCEG--FVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKK-CQQEMDQYWAIGSL 591
G F C TGRCI RLLCN DNDCGD SDE NC++ + C+ + + +
Sbjct: 95 PEEGCGNDFQCG-TGRCIKNRLLCNEDNDCGDYSDEDNCEQDPRPPCRNRVVEESELART 153
Query: 592 AS-GINLFTNNLEGPVLDHRYYAGACSPHYILNTR--FRKPYNVENFNPQTQGKYDFVLT 762
A GIN+ + D++YY G C + NT +R+P+NV + T+ +F
Sbjct: 154 AGFGINILGMDPLSTPFDNQYYNGLCDRVWDGNTLTYYRRPWNVASLTYDTKADKNFRTE 213
Query: 763 EYESYSDFEQNVT-----------TAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISR 909
+E + + + + STS K
Sbjct: 214 NHEESIQILRTIIEEKKLNFNAGLSVKYTPVEAIEKNKCVDLEHSDKGSTSSPSKLAAEA 273
Query: 910 TKRFSHTKST---------------FLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPL 1044
RF+++K FLH + + + R+ ++SR++ML FL + LP
Sbjct: 274 KFRFTYSKDDIYRLLSSYSAKQEKMFLHVKGKVHLGRFVMRSRDVMLQTTFLDSINTLPT 333
Query: 1045 EYSYGEYRDLFRDFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIG 1224
Y GEY +GTHY + LGG+YE +++K++ME+ D L+DV C GF +
Sbjct: 334 TYEKGEYFAFLETYGTHYSSSGSLGGLYELIYVLDKKSMEQKDIELRDVQRCL--GFDL- 390
Query: 1225 VAIEEVYIKLGVSV------HKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAY 1386
++ +K+GV V C + N + + +D++ +RGG ++ T L
Sbjct: 391 ----DLSLKVGVEVTGNFDSKLCSKKGMGQTETNPEADLFDDVITFIRGGTRKYATELKE 446
Query: 1387 KDLPTADLMQ-----EWGDAVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEE 1551
K L A ++ W ++ + P +I K P+Y+L+ + KQN++RA+E+
Sbjct: 447 KLLRGARMINVTDFVNWAASLNHAPVLISQKLVPIYDLI-PVKMKDAHLKKQNLERAIED 505
Query: 1552 FEKEISSCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEV 1674
+ E S C PCQ G VL + C C CP F+G ACE+
Sbjct: 506 YINEFSVRKCQPCQNGGTVVLLDGECVCSCPKEFKGVACEI 546
>ref|NP_001179466.1| hemicentin-1 [Bos taurus].
Length = 5635
Score = 68.6 bits (166), Expect = 2e-11
Identities = 50/145 (34%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Frame = +1
Query: 1585 PCQGN-GVPVLKESR-CDCICPAG----FQGSACEVTN--RKNVPIDGKWNCWSDWSPCS 1740
PC G + K SR C+ PA QGS E+ N +K P+DG W+ WS W C+
Sbjct: 4540 PCSATCGKGIQKRSRLCNNPSPANGGKPCQGSDSEMQNCHQKPCPVDGNWSEWSPWEECT 4599
Query: 1741 G----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC*GR----ESF*RVMLLWAAHSES- 1893
G +TR R CNNP Q+GG PC G A + + C R W S S
Sbjct: 4600 RSCGRGNRTRTRTCNNPSAQHGGRPCEGTAMEIIMCNIRPCPVHGAWSTWQPWGTCSVSC 4659
Query: 1894 SEPLRTPAQLTSTPPPTWGLAHRGG 1968
+ +T A+L + PPP++ ++ G
Sbjct: 4660 GKGTQTRARLCNNPPPSFAGSYCDG 4684
Score = 65.9 bits (159), Expect = 1e-10
Identities = 41/123 (33%), Positives = 53/123 (43%), Gaps = 27/123 (21%)
Frame = +1
Query: 1525 QNMKRALEEFEKEISSCHCAPCQGNGVPVLKE--SRCDCIC--------------PAGFQ 1656
Q+ R E EI C+ PC +G + C C P F
Sbjct: 4619 QHGGRPCEGTAMEIIMCNIRPCPVHGAWSTWQPWGTCSVSCGKGTQTRARLCNNPPPSFA 4678
Query: 1657 GSACE-------VTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSP 1803
GS C+ V N ++ PIDGKW W+ WS CS GG + R R C++P PQ GG+
Sbjct: 4679 GSYCDGAETQIQVCNERHCPIDGKWATWTSWSACSVSCGGGARQRTRDCSDPAPQYGGNK 4738
Query: 1804 CLG 1812
C G
Sbjct: 4739 CEG 4741
Score = 62.8 bits (151), Expect = 1e-09
Identities = 35/91 (38%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Frame = +1
Query: 1597 NGVPVLKESRCDCICPAGFQGSAC-------EVTNRKNVPIDGKWNCWSDWSPCS----G 1743
NG + + CD P+ G AC + N P+DG W W WS CS G
Sbjct: 4774 NGGQMRRYRTCDNPRPSN-GGRACGGPDSQIQRCNTDMCPVDGSWGNWHSWSWCSTSCGG 4832
Query: 1744 GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G KTR R CNNP P G PC G A++ C
Sbjct: 4833 GEKTRERLCNNPIPSKSGRPCPGDATQVSRC 4863
Score = 59.3 bits (142), Expect = 1e-08
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Frame = +1
Query: 1579 CAPCQGNGVPVLKESRCDCICPAG-FQGSACEVT-------NRKNVPIDGKWNCWSDWSP 1734
C+ G G ++ DC PA + G+ CE + N + P G W+ WS W
Sbjct: 4712 CSVSCGGGA---RQRTRDCSDPAPQYGGNKCEGSDVQSDFCNSDSCPTHGNWSPWSGWGI 4768
Query: 1735 CS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
CS GG+ R R C+NP P NGG C GP S+ C
Sbjct: 4769 CSRTCNGGQMRRYRTCDNPRPSNGGRACGGPDSQIQRC 4806
Score = 56.2 bits (134), Expect = 1e-07
Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 27/121 (22%)
Frame = +1
Query: 1555 EKEISSCHCAPC--QGNGVPVLKESRCDCICPAGFQ--------------GSACEVT--- 1677
+ E+ +CH PC GN C C G + G CE T
Sbjct: 4572 DSEMQNCHQKPCPVDGNWSEWSPWEECTRSCGRGNRTRTRTCNNPSAQHGGRPCEGTAME 4631
Query: 1678 ----NRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLN 1833
N + P+ G W+ W W CS G +TR R CNNPPP GS C G ++
Sbjct: 4632 IIMCNIRPCPVHGAWSTWQPWGTCSVSCGKGTQTRARLCNNPPPSFAGSYCDGAETQIQV 4691
Query: 1834 C 1836
C
Sbjct: 4692 C 4692
Score = 55.1 bits (131), Expect = 2e-07
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +1
Query: 1690 VPIDGKWNCWSDWSPCSG----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
V + G ++ WS W PCS G + R R CNNP P NGG PC G S+ NC
Sbjct: 4526 VQVPGGFSQWSAWRPCSATCGKGIQKRSRLCNNPSPANGGKPCQGSDSEMQNC 4578
>ref|XP_002694295.1| PREDICTED: hemicentin 1 [Bos taurus].
Length = 5635
Score = 68.6 bits (166), Expect = 2e-11
Identities = 50/145 (34%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Frame = +1
Query: 1585 PCQGN-GVPVLKESR-CDCICPAG----FQGSACEVTN--RKNVPIDGKWNCWSDWSPCS 1740
PC G + K SR C+ PA QGS E+ N +K P+DG W+ WS W C+
Sbjct: 4540 PCSATCGKGIQKRSRLCNNPSPANGGKPCQGSDSEMQNCHQKPCPVDGNWSEWSPWEECT 4599
Query: 1741 G----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC*GR----ESF*RVMLLWAAHSES- 1893
G +TR R CNNP Q+GG PC G A + + C R W S S
Sbjct: 4600 RSCGRGNRTRTRTCNNPSAQHGGRPCEGTAMEIIMCNIRPCPVHGAWSTWQPWGTCSVSC 4659
Query: 1894 SEPLRTPAQLTSTPPPTWGLAHRGG 1968
+ +T A+L + PPP++ ++ G
Sbjct: 4660 GKGTQTRARLCNNPPPSFAGSYCDG 4684
Score = 65.9 bits (159), Expect = 1e-10
Identities = 41/123 (33%), Positives = 53/123 (43%), Gaps = 27/123 (21%)
Frame = +1
Query: 1525 QNMKRALEEFEKEISSCHCAPCQGNGVPVLKE--SRCDCIC--------------PAGFQ 1656
Q+ R E EI C+ PC +G + C C P F
Sbjct: 4619 QHGGRPCEGTAMEIIMCNIRPCPVHGAWSTWQPWGTCSVSCGKGTQTRARLCNNPPPSFA 4678
Query: 1657 GSACE-------VTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSP 1803
GS C+ V N ++ PIDGKW W+ WS CS GG + R R C++P PQ GG+
Sbjct: 4679 GSYCDGAETQIQVCNERHCPIDGKWATWTSWSACSVSCGGGARQRTRDCSDPAPQYGGNK 4738
Query: 1804 CLG 1812
C G
Sbjct: 4739 CEG 4741
Score = 62.8 bits (151), Expect = 1e-09
Identities = 35/91 (38%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Frame = +1
Query: 1597 NGVPVLKESRCDCICPAGFQGSAC-------EVTNRKNVPIDGKWNCWSDWSPCS----G 1743
NG + + CD P+ G AC + N P+DG W W WS CS G
Sbjct: 4774 NGGQMRRYRTCDNPRPSN-GGRACGGPDSQIQRCNTDMCPVDGSWGNWHSWSWCSTSCGG 4832
Query: 1744 GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G KTR R CNNP P G PC G A++ C
Sbjct: 4833 GEKTRERLCNNPIPSKSGRPCPGDATQVSRC 4863
Score = 59.3 bits (142), Expect = 1e-08
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Frame = +1
Query: 1579 CAPCQGNGVPVLKESRCDCICPAG-FQGSACEVT-------NRKNVPIDGKWNCWSDWSP 1734
C+ G G ++ DC PA + G+ CE + N + P G W+ WS W
Sbjct: 4712 CSVSCGGGA---RQRTRDCSDPAPQYGGNKCEGSDVQSDFCNSDSCPTHGNWSPWSGWGI 4768
Query: 1735 CS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
CS GG+ R R C+NP P NGG C GP S+ C
Sbjct: 4769 CSRTCNGGQMRRYRTCDNPRPSNGGRACGGPDSQIQRC 4806
Score = 56.2 bits (134), Expect = 1e-07
Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 27/121 (22%)
Frame = +1
Query: 1555 EKEISSCHCAPC--QGNGVPVLKESRCDCICPAGFQ--------------GSACEVT--- 1677
+ E+ +CH PC GN C C G + G CE T
Sbjct: 4572 DSEMQNCHQKPCPVDGNWSEWSPWEECTRSCGRGNRTRTRTCNNPSAQHGGRPCEGTAME 4631
Query: 1678 ----NRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLN 1833
N + P+ G W+ W W CS G +TR R CNNPPP GS C G ++
Sbjct: 4632 IIMCNIRPCPVHGAWSTWQPWGTCSVSCGKGTQTRARLCNNPPPSFAGSYCDGAETQIQV 4691
Query: 1834 C 1836
C
Sbjct: 4692 C 4692
Score = 55.1 bits (131), Expect = 2e-07
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +1
Query: 1690 VPIDGKWNCWSDWSPCSG----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
V + G ++ WS W PCS G + R R CNNP P NGG PC G S+ NC
Sbjct: 4526 VQVPGGFSQWSAWRPCSATCGKGIQKRSRLCNNPSPANGGKPCQGSDSEMQNC 4578
>ref|NP_777131.1| SCO-spondin precursor [Bos taurus].
Length = 5146
Score = 63.5 bits (153), Expect = 7e-10
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +1
Query: 1693 PIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
P+ G W W W PCS GG ++RRR C +PPP+NGG+PC GP + C
Sbjct: 2532 PVAGAWAEWEAWGPCSVSCGGGHRSRRRSCMDPPPKNGGAPCPGPPQERAPC 2583
Score = 61.2 bits (147), Expect = 3e-09
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = +1
Query: 1678 NRKNVPIDGKWNCWSDWS----PCSGGRKTRRRQCNNPPPQNGGSPCLG 1812
N + P+ G W+ WS WS C GGR R R C++PPP+NGG+PC+G
Sbjct: 3989 NLRACPVPGGWSRWSPWSWCDRSCGGGRSLRSRSCSSPPPKNGGAPCVG 4037
Score = 58.9 bits (141), Expect = 2e-08
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +1
Query: 1570 SCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCSG-- 1743
+C C Q G P E+ AG Q + P+DG W+ W WSPC
Sbjct: 3414 ACSCPAPQHGGAPCPGEAG-----EAGAQHQRETCASTPECPVDGAWSPWGPWSPCEVCL 3468
Query: 1744 GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC*GRES 1851
GR R R+C+ PP GG PC G ++ C G +
Sbjct: 3469 GRSHRSRECSWPPTSEGGRPCPGGHRQSRPCQGNST 3504
Score = 55.8 bits (133), Expect = 1e-07
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Frame = +1
Query: 1564 ISSCHCA---PCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSP 1734
+S C C Q GVP L ++ C+C G CE P+ W+ WS W P
Sbjct: 2651 LSECPCLVGEELQQPGVPFLLDNCSRCVCEKG--ALLCEPGG---CPVPCGWSAWSSWGP 2705
Query: 1735 CS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
C G + R R +NPP +GG+PC G + C
Sbjct: 2706 CDRSCGSGLRARFRSPSNPPAASGGAPCEGQRQELQAC 2743
Score = 54.7 bits (130), Expect = 3e-07
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +1
Query: 1600 GVPVLKESRCD-CICPAGFQGSACEVTNRKNVPIDGKWNCWSDWS----PCSGGRKTRRR 1764
G + K C+ C C G Q + ++ P+ G W WS+W+ PC G +TR R
Sbjct: 3359 GAQLAKPDGCNYCTCSEG-QLTCTDLP----CPVPGAWCPWSEWTACSQPCQGQTRTRSR 3413
Query: 1765 QCNNPPPQNGGSPCLGPASK 1824
C+ P PQ+GG+PC G A +
Sbjct: 3414 ACSCPAPQHGGAPCPGEAGE 3433
Score = 50.8 bits (120), Expect = 5e-06
Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Frame = +1
Query: 1549 EFEKEISSCHCAPC-----QGN-----GVPVLKESRCDCICPAGFQGSACEVTNRKNVPI 1698
E + + C +PC QG G L++ C C +G CE +
Sbjct: 4190 EEQSQSQPCPQSPCPPLCLQGTRPRSLGDSWLQDGCQQCSCTP--EGIICEDAECAGL-- 4245
Query: 1699 DGKWNCWSDWSPC----SGGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G W WS WS C GG + R R C P GGSPCLGP ++ C
Sbjct: 4246 -GAWTPWSPWSDCPVSCGGGNQVRTRVCVASAPPRGGSPCLGPDVQSQRC 4294
Score = 50.4 bits (119), Expect = 6e-06
Identities = 23/41 (56%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +1
Query: 1693 PIDGKWNCWSDWSPCS---GGRKTRRRQCNNPPPQNGGSPC 1806
P DG W WS WSPCS GG R R+C+ PPQNGG C
Sbjct: 1745 PEDGVWTSWSRWSPCSEPCGGVTARHRECH--PPQNGGRTC 1783
>ref|NP_789861.1| thrombospondin-2 precursor [Bos taurus].
Length = 1170
Score = 60.1 bits (144), Expect = 8e-09
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Frame = +1
Query: 1567 SSCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKN-------VPIDGKWNCWSD 1725
SSC GN V + C+ P G +C+ + R+ P+DG+W+ WS
Sbjct: 445 SSCSVTCGVGN---VTRIRLCNSPVPQ-MGGRSCKGSGRETKACQGPPCPVDGRWSPWSP 500
Query: 1726 WSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
WS C+ GG + R R CN+P PQ+GG C+G A + C
Sbjct: 501 WSACTVTCAGGIRERTRVCNSPEPQHGGKDCVGGAKEQQMC 541
Score = 55.5 bits (132), Expect = 2e-07
Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 28/116 (24%)
Frame = +1
Query: 1579 CAPCQGNGV----PVLKESRCDCICPAGFQ--GSACEVTNRK------------------ 1686
C C +G P + + C C +G Q G +C+VT+
Sbjct: 371 CPSCVHDGEEGWSPWAEWTECSATCGSGTQQRGRSCDVTSNTCLGPSIQTRACSLGRCDH 430
Query: 1687 NVPIDGKWNCWSDWSPCSG----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC*G 1842
+ DG W+ WS WS CS G TR R CN+P PQ GG C G +T C G
Sbjct: 431 RIRQDGGWSHWSPWSSCSVTCGVGNVTRIRLCNSPVPQMGGRSCKGSGRETKACQG 486
>ref|XP_002696487.1| PREDICTED: sema domain, seven thrombospondin repeats (type 1 and type
1-like), transmembrane domain (TM) and short cytoplasmic
domain, (semaphorin) 5A [Bos taurus].
Length = 1073
Score = 58.9 bits (141), Expect = 2e-08
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +1
Query: 1693 PIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
P+DG W+CWS WS CS GG R R C NP P GG CLG ++ C
Sbjct: 838 PVDGMWSCWSSWSTCSATCGGGHYMRTRSCTNPAPAYGGDICLGLHTEEALC 889
Score = 58.2 bits (139), Expect = 3e-08
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +1
Query: 1696 IDGKWNCWSDWSPCSG----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
++G W+ W+ WS CS G + R+R CNNP P+ GG PCLGP+ + C
Sbjct: 782 VNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKFGGMPCLGPSLEYQEC 832
Score = 52.0 bits (123), Expect = 2e-06
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Frame = +1
Query: 1684 KNVPIDGKWNCWSDWSPCS-------GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
+N+ +DG + WS W+PC+ G R R C++P PQ GG C GP + NC
Sbjct: 534 RNLTVDGHFGAWSPWTPCTHMDGSAVGSCLCRTRSCDSPAPQCGGWQCQGPRMEIANC 591
Score = 50.8 bits (120), Expect = 5e-06
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +1
Query: 1654 QGSACEVTNRKNVPIDGKWNCWSDWSPCSG----GRKTRRRQCNNPPPQNGGSPCLGPAS 1821
QG E+ N +G W W+ WSPCS G + R+R C+NP P++GG C+G
Sbjct: 582 QGPRMEIANCSR---NGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNR 638
Query: 1822 KTLNC 1836
+ C
Sbjct: 639 EERYC 643
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 82,073,972
Number of extensions: 2339211
Number of successful extensions: 9273
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 9023
Number of HSP's successfully gapped: 78
Length of query: 704
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 595
Effective length of database: 14,074,782
Effective search space: 8374495290
Effective search space used: 8374495290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008835
(2114 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536694.2| PREDICTED: similar to Complement component C8 b... 1033 0.0
Alignment gi|XP_536695.2| PREDICTED: similar to complement component 8, a... 349 7e-96
Alignment gi|XP_868028.1| PREDICTED: similar to Complement component C6 p... 291 2e-78
Alignment gi|XP_536488.2| PREDICTED: similar to Complement component C6 p... 291 2e-78
Alignment gi|XP_546339.2| PREDICTED: similar to complement component 7 pr... 243 5e-64
Alignment gi|XP_536494.2| PREDICTED: similar to Complement component C9 p... 203 5e-52
Alignment gi|XP_536489.2| PREDICTED: similar to complement component 6 [C... 166 6e-41
Alignment gi|XP_868034.1| PREDICTED: similar to complement component 7 pr... 74 7e-13
Alignment gi|XP_547438.2| PREDICTED: similar to High Incidence of Males (... 68 4e-11
Alignment gi|NP_001075179.1| SCO-spondin [Canis lupus familiaris]. 63 1e-09
>ref|XP_536694.2| PREDICTED: similar to Complement component C8 beta chain precursor
(Complement component 8 beta subunit) [Canis familiaris].
Length = 590
Score = 1033 bits (2670), Expect = 0.0
Identities = 487/590 (82%), Positives = 521/590 (88%)
Frame = +1
Query: 67 MKTSGTWAWRMPAKLFLLCAALGCLSLPGSRGERPHSLESNAVNESLGKSRQTRSVDVTL 246
MKTS WR A+L LLCAALGCLSLPGSR ERP SLESNAVNESL KSRQTRSVDVTL
Sbjct: 1 MKTSRPQGWRALAELILLCAALGCLSLPGSRSERPQSLESNAVNESLAKSRQTRSVDVTL 60
Query: 247 TPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRSQV 426
PIDCELSSWSSWT CDPCQKKRYRHASLLRPSQF+GEPC+FSDKEVEDCV++RPCRSQV
Sbjct: 61 MPIDCELSSWSSWTMCDPCQKKRYRHASLLRPSQFYGEPCNFSDKEVEDCVTSRPCRSQV 120
Query: 427 RCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQYWAIGSLASGIN 606
RCEGFVCAQTGRC+NRRLLCNGDNDCGDQSDEANC+RIYKKCQ EM+QYWAIG LASG+N
Sbjct: 121 RCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMEQYWAIGRLASGVN 180
Query: 607 LFTNNLEGPVLDHRYYAGACSPHYILNTRFRKPYNVENFNPQTQGKYDFVLTEYESYSDF 786
LFTN+ EGPVLDHRYYAG CSPHYILNTRFRKPYNVE++ PQTQGKY F LT YESYSDF
Sbjct: 181 LFTNSFEGPVLDHRYYAGGCSPHYILNTRFRKPYNVESYTPQTQGKYKFALTAYESYSDF 240
Query: 787 EQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKRFSHTKSTFLHARSDLE 966
E N+T +FEFGIS SD GK FISR KRFSHTKSTFLHARSDLE
Sbjct: 241 EHNITKTERSTSSFSFGFKIPEIFEFGISMASDNGKHFISRIKRFSHTKSTFLHARSDLE 300
Query: 967 VARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGVYEYTLIM 1146
VA YKLK R+LMLHYEFLQRVK LPLEYSYGEYRDLFRDFGTHYITEAVLGG+YEYTLIM
Sbjct: 301 VAHYKLKPRSLMLHYEFLQRVKLLPLEYSYGEYRDLFRDFGTHYITEAVLGGIYEYTLIM 360
Query: 1147 NKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCKDILNEIKDRNKRSSMV 1326
NKEAMERADYSLK + CAQ+ FKIG AI+++Y+ LGVSV C+ IL EI DRNKR++MV
Sbjct: 361 NKEAMERADYSLKAIQTCAQNDFKIGAAIKKIYVNLGVSVDTCEHILREIGDRNKRNTMV 420
Query: 1327 NDLVVLVRGGASEHITALAYKDLPTADLMQEWGDAVQYNPDIIKIKAEPLYELVTAADFA 1506
DLVVLVRGGASEHIT LAYK+LPTADLMQEWGDAVQYNPDIIKIKAEPLYELVTA DFA
Sbjct: 421 EDLVVLVRGGASEHITTLAYKELPTADLMQEWGDAVQYNPDIIKIKAEPLYELVTATDFA 480
Query: 1507 YSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRK 1686
YSSTV+QNMKRALEEF+KE+SSC CAPCQGNGVPVLKESRCDCICP G +G ACEVT K
Sbjct: 481 YSSTVRQNMKRALEEFQKEVSSCRCAPCQGNGVPVLKESRCDCICPIGSRGPACEVTYEK 540
Query: 1687 NVPIDGKWNCWSDWSPCSGGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
NV IDG+WNCWS+WSPCSGG KTR+RQCNNPPPQN GSPCLGPAS+TLNC
Sbjct: 541 NVAIDGRWNCWSNWSPCSGGHKTRQRQCNNPPPQNEGSPCLGPASETLNC 590
>ref|XP_536695.2| PREDICTED: similar to complement component 8, alpha polypeptide
precursor [Canis familiaris].
Length = 589
Score = 349 bits (895), Expect = 7e-96
Identities = 195/572 (34%), Positives = 294/572 (51%), Gaps = 31/572 (5%)
Frame = +1
Query: 214 SRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVED 393
SR +S +T P C+LS+WS WT C PCQ K+YR+ SLL+P +F G C +
Sbjct: 29 SRAVQSAPITAVP--CQLSNWSEWTDCFPCQDKKYRYRSLLQPDKFGGTICSGDVWDQAS 86
Query: 394 CVSNRPCRSQVRC-EGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQ 570
C S C Q +C + F C +TGRC+ R L+CNGD DC D SDE +C+ + + + + Q
Sbjct: 87 CHSPTACLHQAQCGQDFQCKETGRCLKRHLVCNGDKDCLDGSDEDDCEDV-RVAENDCSQ 145
Query: 571 YWAIG---SLASGINLFTNNLEGPVLDHRYYAGACSPHYILNTR---------------- 693
Y I S A G N+ T V D RYY G C Y R
Sbjct: 146 YEPIPGSESAALGYNILTQKEAQHVYDPRYYGGQCETVYNGEWREIRYDPTCERLYYGED 205
Query: 694 ---FRKPYNVENFNPQTQGKYDFVLTEYESYSDFEQNVTT---AAXXXXXXXXXXXXXXM 855
FRKPYN ++ + F Y+ D V +
Sbjct: 206 EKYFRKPYNFLKYHFEALADTRFSSELYDDAHDLLSKVKNNNFVSTGVTVGVSFTGSSVT 265
Query: 856 FEFGISSTSDKGKRFISRTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQ 1035
+ G+SS+ + + K+++ K +FL + ++ A +K++ N++L LQ + +
Sbjct: 266 VDVGVSSSQNSSS--LDELKKYNKKKYSFLRVFTKVQTAHFKMRRGNIVLDEGMLQSLME 323
Query: 1036 LPLEYSYGEYRDLFRDFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGF 1215
LP +Y+YG Y D+GTHYIT +GG+YE+ L++NKE ME + +D+ C F
Sbjct: 324 LPEQYNYGMYAKFINDYGTHYITSGSMGGIYEHILVLNKEEMESQRITSRDIEKC----F 379
Query: 1216 KIGVAIEEVY---IKLGVSV--HKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITAL 1380
I V IE Y +K+G S+ C++I ++ ++ V D++ LVRGG+S L
Sbjct: 380 GISVGIEYDYANWMKIGGSLGGKGCENIGGGDSKGHRLTTAVEDIISLVRGGSSGWGAGL 439
Query: 1381 AYKDLPTADLMQEWGDAVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEK 1560
A K + + WG +++YNP +I + +P++E++ T +QN+ RAL+++
Sbjct: 440 AEKR--STITYRSWGRSLKYNPVVIDFEMQPIHEVLRHTTLGPLETKRQNLHRALDQYLM 497
Query: 1561 EISSCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCS 1740
E ++C C PC NG P+L+ + C C CP G +G +CE +K DG W+CWS WS C
Sbjct: 498 EFNACRCGPCFNNGKPILEGTSCKCQCPLGRKGLSCEQMEQKGAKADGHWSCWSSWSACR 557
Query: 1741 GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G + RRR+CNNP PQNGG+ C G ++T C
Sbjct: 558 AGTQERRRECNNPTPQNGGASCPGWKAQTQAC 589
>ref|XP_868028.1| PREDICTED: similar to Complement component C6 precursor isoform 2
[Canis familiaris].
Length = 936
Score = 291 bits (745), Expect = 2e-78
Identities = 164/558 (29%), Positives = 269/558 (48%), Gaps = 12/558 (2%)
Frame = +1
Query: 199 ESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSD 378
+ L +TR + PI+C L + W+ CDPC +K+++ S+LRPSQF G+PC
Sbjct: 62 DQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPL 121
Query: 379 KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKC- 552
+ C+ ++ C+ ++ C+ +GRCI +L CNG+NDCGD SDE NC R C
Sbjct: 122 VTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVCP 181
Query: 553 -QQEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACSP--HYILNTRFRKPYNVENF 723
+++ + ++ + +G + G VLD+ + G C + +R P N+EN
Sbjct: 182 GKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPYRVPANLENV 241
Query: 724 NPQTQGKYDFVLTE-YESYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRF 900
N + Q K D + T+ Y+ +N + + ++ F
Sbjct: 242 NFEVQTKEDDLETDFYKDLISLTKNENQQGLFGGEEQSSLYIPIFYSSKKTQSTTHNSAF 301
Query: 901 ISRTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFR 1080
+ S+F +EV + +K+++L L FL+ + LPLEY++ Y +F
Sbjct: 302 KQAIQASHKKDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEYNFALYSRIFD 361
Query: 1081 DFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGV 1260
DFGTHY T LGGVY+ + E + + + K++ C K V ++
Sbjct: 362 DFGTHYYTSGSLGGVYDLLYQYSAEELRTSGLTEKEIQNCVSTETKKSV----LFFSKKE 417
Query: 1261 SVHKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAYK---DLPTADLMQEWGDA 1431
H+C K + L++GG S++ ALA++ +PT EW ++
Sbjct: 418 VEHRCTTNKMSKKYEGSFLQGAEKSISLIQGGRSKYAAALAWEKGSSVPTEKEFSEWLES 477
Query: 1432 VQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPV 1611
V+ NP +I + P+ +LV + + T + N+++A E+ + C CAPC NG P
Sbjct: 478 VKENPVVIDFELAPITDLV--RNIPCAVTRRNNLRKAFREYAAKFDPCWCAPCPNNGRPT 535
Query: 1612 LKESRCDCICPAGFQGSACE--VTNRKNVPIDGKWNCWSDWSPCSGG-RKTRRRQCNNPP 1782
L + C C+C +G G CE + K+ +DG W+CWS WS C +++R R+CNNP
Sbjct: 536 LSGTECLCVCHSGTYGDNCERRSPDYKSNAVDGNWSCWSSWSTCDATYKRSRTRECNNPA 595
Query: 1783 PQNGGSPCLGPASKTLNC 1836
PQ GG PC G + +C
Sbjct: 596 PQQGGKPCEGEQRQEEDC 613
>ref|XP_536488.2| PREDICTED: similar to Complement component C6 precursor isoform 1
[Canis familiaris].
Length = 936
Score = 291 bits (745), Expect = 2e-78
Identities = 164/558 (29%), Positives = 269/558 (48%), Gaps = 12/558 (2%)
Frame = +1
Query: 199 ESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSD 378
+ L +TR + PI+C L + W+ CDPC +K+++ S+LRPSQF G+PC
Sbjct: 62 DQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPL 121
Query: 379 KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKC- 552
+ C+ ++ C+ ++ C+ +GRCI +L CNG+NDCGD SDE NC R C
Sbjct: 122 VTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVCP 181
Query: 553 -QQEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACSP--HYILNTRFRKPYNVENF 723
+++ + ++ + +G + G VLD+ + G C + +R P N+EN
Sbjct: 182 GKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPYRVPANLENV 241
Query: 724 NPQTQGKYDFVLTE-YESYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRF 900
N + Q K D + T+ Y+ +N + + ++ F
Sbjct: 242 NFEVQTKEDDLETDFYKDLISLTKNENQQGLFGGEEQSSLYIPIFYSSKKTQSTTHNSAF 301
Query: 901 ISRTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFR 1080
+ S+F +EV + +K+++L L FL+ + LPLEY++ Y +F
Sbjct: 302 KQAIQASHKKDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEYNFALYSRIFD 361
Query: 1081 DFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGV 1260
DFGTHY T LGGVY+ + E + + + K++ C K V ++
Sbjct: 362 DFGTHYYTSGSLGGVYDLLYQYSAEELRTSGLTEKEIQNCVSTETKKSV----LFFSKKE 417
Query: 1261 SVHKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAYK---DLPTADLMQEWGDA 1431
H+C K + L++GG S++ ALA++ +PT EW ++
Sbjct: 418 VEHRCTTNKMSKKYEGSFLQGAEKSISLIQGGRSKYAAALAWEKGSSVPTEKEFSEWLES 477
Query: 1432 VQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPV 1611
V+ NP +I + P+ +LV + + T + N+++A E+ + C CAPC NG P
Sbjct: 478 VKENPVVIDFELAPITDLV--RNIPCAVTRRNNLRKAFREYAAKFDPCWCAPCPNNGRPT 535
Query: 1612 LKESRCDCICPAGFQGSACE--VTNRKNVPIDGKWNCWSDWSPCSGG-RKTRRRQCNNPP 1782
L + C C+C +G G CE + K+ +DG W+CWS WS C +++R R+CNNP
Sbjct: 536 LSGTECLCVCHSGTYGDNCERRSPDYKSNAVDGNWSCWSSWSTCDATYKRSRTRECNNPA 595
Query: 1783 PQNGGSPCLGPASKTLNC 1836
PQ GG PC G + +C
Sbjct: 596 PQQGGKPCEGEQRQEEDC 613
>ref|XP_546339.2| PREDICTED: similar to complement component 7 precursor isoform 1
[Canis familiaris].
Length = 863
Score = 243 bits (620), Expect = 5e-64
Identities = 159/545 (29%), Positives = 254/545 (46%), Gaps = 15/545 (2%)
Frame = +1
Query: 247 TPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRSQV 426
+P++C+ +++ W+ C+ C K + S+ Q+ G PC S E + C R C ++
Sbjct: 24 SPVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTRGCPTEE 83
Query: 427 RC-EGFVCAQTGRCINRRLLCNGDNDCG-DQSDEANCKRIYKKCQQEMDQYWA-IGSLAS 597
C E F C +G+CI++ L+CNGD+DC D +DE C+ + ++DQ I +
Sbjct: 84 GCGERFRCF-SGQCISKSLVCNGDSDCEEDSADEDKCEDSESRPSCDLDQPPPNIELTGN 142
Query: 598 GINLFTNNLEGPVLDHRYYAGACSPHYILNTRF--RKPYNVENFNPQTQGKYDFVLTEYE 771
G N T + V++ + + G C + + F R N+ ++ Q + DF Y
Sbjct: 143 GYNELTGQFKNKVINTKSFGGQCRKVFSGDGNFFYRLSGNILSYTFQVKINNDFNYEFYN 202
Query: 772 SYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKRFSHTKS-TFLH 948
S + ++ + SS+S IS T + K+ L
Sbjct: 203 SSWSYVKHTSAEYTSSRKKSSL----------FSSSSSSSYNRISHTSKTHENKNHQLLI 252
Query: 949 ARSDLEVARYKLKSRNLM-LHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGV 1125
++ +EVA++ + + L F + + LP Y Y YR L +GTHY+ LGG
Sbjct: 253 VQNTVEVAQFVNNNPEFLHLAEPFWKELSLLPPLYDYSAYRRLIDQYGTHYLQSGSLGGE 312
Query: 1126 YEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCKDILNEIK-D 1302
Y+ ++ +++ D+ CA F ++ S +KCKD+ + +K D
Sbjct: 313 YKVVFYVDSRKLKQRGLGSVDMKECAASTFN--------FLFYASSENKCKDLEDVLKSD 364
Query: 1303 RNKRSSMVNDLVVLVRGGASEHITALAYKDLPTA----DLMQEWGDAVQYNPDIIKIKAE 1470
+ +MV VRGG+ + + L+ L W ++V P +IK K
Sbjct: 365 SGTQGNMVRG-DPYVRGGSLDFVAGLSKLQLDNPAGNKGRYASWAESVTRLPQVIKQKLT 423
Query: 1471 PLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAG 1650
PLYELV A S + +KRALEE+ E CHC PCQ G+ ++ ++C C C
Sbjct: 424 PLYELVKEVPCA--SVKRLYLKRALEEYLDEFDPCHCRPCQNGGIATVEGTQCQCHCKPY 481
Query: 1651 FQGSACE---VTNRKNVPIDGKWNCWSDWSPCSGGRKTRRRQCNNPPPQNGGSPCLGPAS 1821
G ACE + + +DG WNCWS W+PC G+KTR R+CNNPPP GG C+G
Sbjct: 482 TFGVACEQGFLVGNEAGGVDGGWNCWSSWTPCVQGKKTRHRECNNPPPSEGGQSCIGEPR 541
Query: 1822 KTLNC 1836
++ C
Sbjct: 542 ESSPC 546
>ref|XP_536494.2| PREDICTED: similar to Complement component C9 precursor [Canis
familiaris].
Length = 589
Score = 203 bits (517), Expect = 5e-52
Identities = 156/539 (28%), Positives = 245/539 (45%), Gaps = 51/539 (9%)
Frame = +1
Query: 223 TRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCH-------FSDK 381
TR D T P+DC +SSWS W+ CDPC K+ + L+ P+ F P F +
Sbjct: 41 TREND-TPFPVDCRMSSWSQWSECDPCLKQMVK--ILIFPAGFVQFPSRSIQVFRQFKGQ 97
Query: 382 EVEDCVSNR-------PCRSQVRCEG---FVCAQTGRCINRRLLCNGDNDCGDQSDEANC 531
+ + NR PC G F C +TGRCI +RLLCNGDNDCGD SDE +C
Sbjct: 98 KGVAALGNRGHWDPGDPCAPGEEDWGGGDFGC-RTGRCIKKRLLCNGDNDCGDFSDEDDC 156
Query: 532 KRIYK-KCQQEMDQYWAIGSLAS-GINLFTNNLEGPVLDHRYYAGACSPHYILNTR--FR 699
+ + C++++ + + +A GIN+ D+ YY G C NT +R
Sbjct: 157 ESDPRLPCREKVVEESELARMAGYGINILGMEPLSTPFDNEYYNGLCDRVRDGNTLVYYR 216
Query: 700 KPYNVENFNPQTQGKYDFVLTEYESYSDFEQNVT---TAAXXXXXXXXXXXXXXMFEFGI 870
+P+NV + +T+ +F YE + + + T+ + + I
Sbjct: 217 RPWNVASLVYETKADKNFRTEYYEEQIESFKKIVQEKTSNFKADIALKLTPTEAIEKCKI 276
Query: 871 SSTSDKGKR--FISRTKRFSHTKS-----------------TFLHARSDLEVARYKLKSR 993
+ + R I+ +F T S FLH + + + R+ ++SR
Sbjct: 277 NPEGEDSPRDSSINAESKFQFTYSKNEIYQLFLTHSSKKEKVFLHVKGVIHLGRFVMRSR 336
Query: 994 NLMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGVYEYTLIMNKEAMERAD 1173
++ML FL +K LP Y GEY +GTHY + LGG YE +++K +ME
Sbjct: 337 DVMLTTTFLDDIKALPSTYEKGEYFAFLETYGTHYSSSGSLGGYYELIYVLDKASMEEKG 396
Query: 1174 YSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCKDILNEIKDRNKRSS---MVNDLVVL 1344
L+DV C GF + ++ E +++ ++K D L + S +++D++ L
Sbjct: 397 VELRDVQRCL--GFNLDFSL-EAGVEISGKLNK-DDCLKRGEGETVNISSDGIIDDVISL 452
Query: 1345 VRGGASEHITALAYKDLPTADLMQ-----EWGDAVQYNPDIIKIKAEPLYELVTAADFAY 1509
+RGG ++ L K L A + W ++ P +I K P+Y L+
Sbjct: 453 IRGGTQKYAYELKEKLLKGAKTIDITDFTNWATSLNDAPVLINHKLSPIYNLI-PVQIKD 511
Query: 1510 SSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRK 1686
+ KQN++ A+E++ E S C C+ G +L E C C CP F G ACE + RK
Sbjct: 512 AHLKKQNLESAIEDYINEFSVRKCDQCKNGGTIILLEGECLCSCPIEFTGIACETSKRK 570
>ref|XP_536489.2| PREDICTED: similar to complement component 6 [Canis familiaris].
Length = 2211
Score = 166 bits (421), Expect = 6e-41
Identities = 96/328 (29%), Positives = 151/328 (46%), Gaps = 6/328 (1%)
Frame = +1
Query: 871 SSTSDKGKRFISRTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEY 1050
SS + R + + + S+F +EV + +K+++L L FL+ + LPLEY
Sbjct: 202 SSKASNPYRVPANLENVNFEDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEY 261
Query: 1051 SYGEYRDLFRDFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVA 1230
++ Y +F DFGTHY T LGGVY+ + E + + L+
Sbjct: 262 NFALYSRIFDDFGTHYYTSGSLGGVYDLLYQYSAEELRTSGSFLQGAEKS---------- 311
Query: 1231 IEEVYIKLGVSVHKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAYK---DLPT 1401
+ L++GG S++ ALA++ +PT
Sbjct: 312 -----------------------------------ISLIQGGRSKYAAALAWEKGSSVPT 336
Query: 1402 ADLMQEWGDAVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHC 1581
EW ++V+ NP +I + P+ +LV A T + N+++A E+ + C C
Sbjct: 337 EKEFSEWLESVKENPVVIDFELAPITDLVRNIPCAV--TRRNNLRKAFREYAAKFDPCWC 394
Query: 1582 APCQGNGVPVLKESRCDCICPAGFQGSACE--VTNRKNVPIDGKWNCWSDWSPCSGG-RK 1752
APC NG P L + C C+C +G G CE + K+ +DG W+CWS WS C ++
Sbjct: 395 APCPNNGRPTLSGTECLCVCHSGTYGDNCERRSPDYKSNAVDGNWSCWSSWSTCDATYKR 454
Query: 1753 TRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
+R R+CNNP PQ GG PC G + +C
Sbjct: 455 SRTRECNNPAPQQGGKPCEGEQRQEEDC 482
Score = 117 bits (294), Expect = 3e-26
Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 5/181 (2%)
Frame = +1
Query: 199 ESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSD 378
+ L +TR + PI+C L + W+ CDPC +K+++ S+LRPSQF G+PC
Sbjct: 39 DQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPL 98
Query: 379 KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKC- 552
+ C+ ++ C+ ++ C+ +GRCI +L CNG+NDCGD SDE NC R C
Sbjct: 99 VTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVCP 158
Query: 553 -QQEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACS--PHYILNTRFRKPYNVENF 723
+++ + ++ + +G + G VLD+ + G C + +R P N+EN
Sbjct: 159 GKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPYRVPANLENV 218
Query: 724 N 726
N
Sbjct: 219 N 219
>ref|XP_868034.1| PREDICTED: similar to complement component 7 precursor isoform 2
[Canis familiaris].
Length = 143
Score = 73.6 bits (179), Expect = 7e-13
Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Frame = +1
Query: 247 TPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRSQV 426
+P++C+ +++ W+ C+ C K + S+ Q+ G PC S E + C R C ++
Sbjct: 24 SPVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTRGCPTEE 83
Query: 427 RC-EGFVCAQTGRCINRRLLCNGDNDC-GDQSDEANCKRIYKKCQQEMDQ 570
C E F C +G+CI++ L+CNGD+DC D +DE C+ + ++DQ
Sbjct: 84 GCGERFRCF-SGQCISKSLVCNGDSDCEEDSADEDKCEDSESRPSCDLDQ 132
>ref|XP_547438.2| PREDICTED: similar to High Incidence of Males (increased X chromosome
loss) family member (him-4) [Canis familiaris].
Length = 5637
Score = 67.8 bits (164), Expect = 4e-11
Identities = 40/111 (36%), Positives = 52/111 (46%), Gaps = 27/111 (24%)
Frame = +1
Query: 1561 EISSCHCAPCQGNGVPVLKE--SRCDCIC--------------PAGFQGSACE------- 1671
EI C+ PC +GV + S C C P F GS C+
Sbjct: 4633 EIVMCNIRPCPVHGVWSTWQPWSACSESCGKGAQIRTRLCNNPPPSFDGSYCDGAETQMQ 4692
Query: 1672 VTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLG 1812
V N ++ P+DGKW W+ WS CS GG + R R+C++P PQ GGS C G
Sbjct: 4693 VCNERHCPVDGKWATWTSWSSCSVSCGGGARQRTRECSDPVPQYGGSRCEG 4743
Score = 64.7 bits (156), Expect = 3e-10
Identities = 49/139 (35%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Frame = +1
Query: 1579 CAPCQGNGVPVLKESR-CDCICPAG----FQGSACEVTN--RKNVPIDGKWNCWSDWSPC 1737
C+ G G+ K SR C+ PA QGS E N RK P+DG W+ W+ W C
Sbjct: 4543 CSVTCGKGIQ--KRSRLCNNPFPANGGKPCQGSDSETRNCQRKLCPVDGGWSEWNPWEEC 4600
Query: 1738 SG----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC*GR----ESF*RVMLLWAAHSES 1893
+ G +TR R CNNP Q GG PC G A + + C R W+A SES
Sbjct: 4601 TRSCGRGNRTRTRTCNNPSAQYGGRPCEGNAVEIVMCNIRPCPVHGVWSTWQPWSACSES 4660
Query: 1894 -SEPLRTPAQLTSTPPPTW 1947
+ + +L + PPP++
Sbjct: 4661 CGKGAQIRTRLCNNPPPSF 4679
Score = 62.4 bits (150), Expect = 2e-09
Identities = 34/91 (37%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Frame = +1
Query: 1597 NGVPVLKESRCDCICPAGFQGSAC-------EVTNRKNVPIDGKWNCWSDWSPCS----G 1743
NG + + CD P+ G AC + N P+DG W W W CS G
Sbjct: 4776 NGGQMRRYRTCDNPHPSN-GGRACGGPDSQIQRCNTDMCPVDGSWGNWHSWGQCSASCGG 4834
Query: 1744 GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G KTR+R CNNP P G PC G A++ C
Sbjct: 4835 GEKTRKRLCNNPVPSISGRPCPGDATQVSRC 4865
Score = 58.5 bits (140), Expect = 2e-08
Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 25/112 (22%)
Frame = +1
Query: 1576 HCAPCQGNGVPVLKESRCDCICPAG--------------FQGSACEVT-------NRKNV 1692
HC P G S C C G + GS CE + N
Sbjct: 4698 HC-PVDGKWATWTSWSSCSVSCGGGARQRTRECSDPVPQYGGSRCEGSDVQSDFCNNDPC 4756
Query: 1693 PIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
P G W+ WS W CS GG+ R R C+NP P NGG C GP S+ C
Sbjct: 4757 PTHGNWSPWSGWGMCSRTCNGGQMRRYRTCDNPHPSNGGRACGGPDSQIQRC 4808
Score = 53.5 bits (127), Expect = 8e-07
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +1
Query: 1690 VPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
V + G ++ WS W CS G + R R CNNP P NGG PC G S+T NC
Sbjct: 4528 VQVHGGYSQWSSWRSCSVTCGKGIQKRSRLCNNPFPANGGKPCQGSDSETRNC 4580
Score = 52.4 bits (124), Expect = 2e-06
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +1
Query: 1654 QGSACEVT--NRKNVPIDGKWNCWSDWSPCSG----GRKTRRRQCNNPPPQNGGSPCLGP 1815
+G+A E+ N + P+ G W+ W WS CS G + R R CNNPPP GS C G
Sbjct: 4628 EGNAVEIVMCNIRPCPVHGVWSTWQPWSACSESCGKGAQIRTRLCNNPPPSFDGSYCDGA 4687
Query: 1816 ASKTLNC 1836
++ C
Sbjct: 4688 ETQMQVC 4694
>ref|NP_001075179.1| SCO-spondin [Canis lupus familiaris].
Length = 5110
Score = 62.8 bits (151), Expect = 1e-09
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +1
Query: 1678 NRKNVPIDGKWNCWSDWS----PCSGGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
N + P+ G W+ WS WS C GGR R R C++PPP+NGG+PC+G ++ C
Sbjct: 3953 NLRACPVPGGWSRWSSWSWCDRSCGGGRSLRSRSCSSPPPKNGGAPCVGERHQSRLC 4009
Score = 60.5 bits (145), Expect = 6e-09
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +1
Query: 1693 PIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
P+ G W W W PCS GG ++R+R C +PPP+NGG+PC G + + C
Sbjct: 2502 PVAGAWAVWGPWGPCSVSCGGGHRSRQRNCVDPPPKNGGAPCPGASQEGAPC 2553
Score = 52.4 bits (124), Expect = 2e-06
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 27/111 (24%)
Frame = +1
Query: 1573 CHCAPCQ---GNGVPVLKESRCDCIC---------------PAGFQGSACEVTNRKNV-- 1692
C+C P Q +G ++ S C C+ P G C R N
Sbjct: 3289 CYCPPGQVLSADGAFCVQRSHCGCLDLLSGERHQPGARLPRPDGCNYCTCS-EGRLNCTD 3347
Query: 1693 ---PIDGKWNCWSDWS----PCSGGRKTRRRQCNNPPPQNGGSPCLGPASK 1824
P+ G W WS+W+ PC +TR R C P PQ+GG+PC G A +
Sbjct: 3348 LPCPVPGGWCPWSEWTACSQPCRSQTRTRSRVCTCPTPQHGGTPCPGKAGE 3398
Score = 51.2 bits (121), Expect = 4e-06
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Frame = +1
Query: 1573 CHCAPCQGNGVPVLKESRCDCICP-----AGFQGSACEVTNRKNVPIDGKWNCWSDWSPC 1737
C C Q G P CP AG Q + + P+DG W+ W WSPC
Sbjct: 3380 CTCPTPQHGGTP----------CPGKAGEAGAQHQKEACPSSPDCPVDGAWSPWGLWSPC 3429
Query: 1738 SG--GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G+ R R C PP GG PC G ++ C
Sbjct: 3430 DPCLGQSHRSRACVWPPTPEGGRPCPGSYRQSRPC 3464
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 84,843,887
Number of extensions: 2310646
Number of successful extensions: 9720
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 9473
Number of HSP's successfully gapped: 69
Length of query: 704
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 594
Effective length of database: 15,207,544
Effective search space: 9033281136
Effective search space used: 9033281136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008835
(2114 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090920.1| complement component C8B [Sus scrofa]. 1140 0.0
Alignment gi|NP_001090919.1| complement component C8 alpha chain [Sus scr... 336 3e-92
Alignment gi|NP_001090918.1| complement component C6 [Sus scrofa]. 296 4e-80
Alignment gi|NP_999447.1| complement component C7 precursor [Sus scrofa]. 257 2e-68
Alignment gi|NP_001090917.1| complement component C9 [Sus scrofa]. 194 1e-49
Alignment gi|XP_003359813.1| PREDICTED: complement component C6-like [Sus... 120 3e-27
Alignment gi|XP_003130436.2| PREDICTED: hemicentin-1-like [Sus scrofa]. 65 1e-10
Alignment gi|XP_003133422.1| PREDICTED: LOW QUALITY PROTEIN: netrin recep... 60 6e-09
Alignment gi|XP_003121123.2| PREDICTED: thrombospondin-2-like [Sus scrofa]. 58 2e-08
Alignment gi|XP_001927477.1| PREDICTED: thrombospondin-1 [Sus scrofa]. 58 2e-08
>ref|NP_001090920.1| complement component C8B [Sus scrofa].
Length = 611
Score = 1140 bits (2949), Expect = 0.0
Identities = 547/566 (96%), Positives = 550/566 (97%)
Frame = +1
Query: 31 MSLSQISCRIEKMKTSGTWAWRMPAKLFLLCAALGCLSLPGSRGERPHSLESNAVNESLG 210
MSLSQISCRIEKMKTSGTWAWRMPA+LFLLCAALGCLSLPGSRGERPHSLESNAVNESLG
Sbjct: 1 MSLSQISCRIEKMKTSGTWAWRMPARLFLLCAALGCLSLPGSRGERPHSLESNAVNESLG 60
Query: 211 KSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVE 390
KSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPC+FSDKEVE
Sbjct: 61 KSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCNFSDKEVE 120
Query: 391 DCVSNRPCRSQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQ 570
DCVSNRPCRSQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQ
Sbjct: 121 DCVSNRPCRSQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQ 180
Query: 571 YWAIGSLASGINLFTNNLEGPVLDHRYYAGACSPHYILNTRFRKPYNVENFNPQTQGKYD 750
YWAIGSLASGINLFTNNLEGPVLDHRYYAGACSPHYILNTRFRKPYNVENFNPQTQGKYD
Sbjct: 181 YWAIGSLASGINLFTNNLEGPVLDHRYYAGACSPHYILNTRFRKPYNVENFNPQTQGKYD 240
Query: 751 FVLTEYESYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKRFSHT 930
F LTEYESYSDFEQNVTTAA MFEFGISSTSDKGKRFISRTKRFSHT
Sbjct: 241 FALTEYESYSDFEQNVTTAAISKSSFSFGFKISGMFEFGISSTSDKGKRFISRTKRFSHT 300
Query: 931 KSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEA 1110
KSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEA
Sbjct: 301 KSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEA 360
Query: 1111 VLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCKDILN 1290
VLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVY+KLGV VHKCKDILN
Sbjct: 361 VLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYVKLGVPVHKCKDILN 420
Query: 1291 EIKDRNKRSSMVNDLVVLVRGGASEHITALAYKDLPTADLMQEWGDAVQYNPDIIKIKAE 1470
EIKDRNKRSSMVNDLVVLVRGGASEHITALAYKDLPTADLMQEWGDAVQYNPDIIKIKAE
Sbjct: 421 EIKDRNKRSSMVNDLVVLVRGGASEHITALAYKDLPTADLMQEWGDAVQYNPDIIKIKAE 480
Query: 1471 PLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAG 1650
PLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAG
Sbjct: 481 PLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAG 540
Query: 1651 FQGSACEVTNRKNVPIDGKWNCWSDW 1728
FQGSACEVTNRKNVPIDGKWNCWSDW
Sbjct: 541 FQGSACEVTNRKNVPIDGKWNCWSDW 566
Score = 82.8 bits (203), Expect = 7e-16
Identities = 40/41 (97%), Positives = 40/41 (97%)
Frame = +2
Query: 1739 LEDVKQDEGSATIHLLKMGAAPAWVLLQKHLTVKEGRASSG 1861
LEDVKQDEGSATIHLLKMG APAWVLLQKHLTVKEGRASSG
Sbjct: 571 LEDVKQDEGSATIHLLKMGVAPAWVLLQKHLTVKEGRASSG 611
>ref|NP_001090919.1| complement component C8 alpha chain [Sus scrofa].
Length = 589
Score = 336 bits (862), Expect = 3e-92
Identities = 180/556 (32%), Positives = 278/556 (50%), Gaps = 24/556 (4%)
Frame = +1
Query: 241 TLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRS 420
T T + C+LS+W+ WT C PCQ K+YR+ SLL+P++F G C + + C S C
Sbjct: 36 TPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGAICSGNVWDQASCHSPTECLR 95
Query: 421 QVRC-EGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCK--RIYKKCQQEMDQYWAIGSL 591
Q +C + F C +TGRC+ R L+CNGD DC D SDE +C+ RI++ + D
Sbjct: 96 QAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPGSERA 155
Query: 592 ASGINLFTNNLEGPVLDHRYYAGACSPHYILNTR-------------------FRKPYNV 714
G N+ T V D RYY G C Y R FR PYN
Sbjct: 156 TLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRNPYNF 215
Query: 715 ENFNPQTQGKYDFVLTEYESYSDFEQNVTTA-AXXXXXXXXXXXXXXMFEFGISSTSDKG 891
++ + F Y+ +D + V + F + + +
Sbjct: 216 LKYHFEALADSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANVGLSGSRE 275
Query: 892 KRFISRTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRD 1071
F+++ ++ K +F+ + ++ A + ++ N+ML LQ + +LP +Y+YG Y
Sbjct: 276 SAFLNKLSTYNEKKYSFIRIFTKVQTASFMMRRDNIMLDEVMLQSLMELPEQYNYGMYAK 335
Query: 1072 LFRDFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAI-EEVYI 1248
D+GTHYIT +GGVYEY L++NKE M ++ + DV +C F I + + I
Sbjct: 336 FIDDYGTHYITSGSMGGVYEYILVLNKENMTKSGVTSDDVTSCFGGSFGIDYDYTDNLQI 395
Query: 1249 KLGVSVHKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAYKDLPTADLMQEWGD 1428
+S CK + ++ + + V D++ VRGG+S L + + WG
Sbjct: 396 TGSLSGKHCKKLGGGHREDEESNMAVEDIISRVRGGSSGWGGGLTQNG--SIITYRAWGR 453
Query: 1429 AVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVP 1608
+++YNP +I + +P+YE++ + +QN++RAL+++ E ++C C PC NG P
Sbjct: 454 SLKYNPAVIDFEMKPIYEILRHTNLGPLEAKRQNLRRALDQYLMEFNACRCGPCFNNGEP 513
Query: 1609 VLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCSGGRKTRRRQCNNPPPQ 1788
+L + C C CP G QG ACE + DG+W+CWS WS C G + RRR+CNNP PQ
Sbjct: 514 ILVGTSCRCQCPVGCQGLACEQMKSEGAKADGRWSCWSSWSACRLGTQERRRECNNPAPQ 573
Query: 1789 NGGSPCLGPASKTLNC 1836
NGG+ C G +T C
Sbjct: 574 NGGASCSGHKVQTQAC 589
>ref|NP_001090918.1| complement component C6 [Sus scrofa].
Length = 935
Score = 296 bits (757), Expect = 4e-80
Identities = 170/559 (30%), Positives = 274/559 (49%), Gaps = 13/559 (2%)
Frame = +1
Query: 199 ESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSD 378
+ L ++TR + PI+C L + W+ CDPC +K+++ S+LRP+QF G+PC
Sbjct: 62 DRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPL 121
Query: 379 KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQ 555
C+ ++ C+ +V C+ +GRCI +L CNG+NDCGD SDE NC R C
Sbjct: 122 MTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS 181
Query: 556 QEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACSP--HYILNTRFRKPYNVENFNP 729
++ + ++ + +G ++ G VL + + G C + FR P N+EN N
Sbjct: 182 RKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNF 241
Query: 730 QTQGKYDFVLTE-YESYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFIS 906
+ Q K D T+ YE E + A + S TS F
Sbjct: 242 EVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYSSKKSQTSSHNSAFKQ 301
Query: 907 RTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDF 1086
+ S+F+ ++V + +K+++L L FL+ + LPLEY+ Y +F DF
Sbjct: 302 AIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSRIFDDF 361
Query: 1087 GTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSV 1266
GTHY T LGGVY+ + E ++ + + ++ C + K + +I V
Sbjct: 362 GTHYFTSGSLGGVYDLLYQFSNEELKNSGLTQEEAKNCIRIETK-----KRYFIVTKTKV 416
Query: 1267 -HKCKDILNEIKDRNKRSSMVND--LVVLVRGGASEHITALAYK---DLPTADLMQEWGD 1428
H+C N + ++ + S + + LV+GG SE+ ALA++ P +W +
Sbjct: 417 EHRC--TTNRMSEKYEGSFLQGSEKSISLVKGGRSEYAAALAWEKGSSGPGEKTYSDWLE 474
Query: 1429 AVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVP 1608
+V+ NP +I + P+ +LV + + T + N++RA E+ + C CAPC NG P
Sbjct: 475 SVKENPAVIDFELAPITDLV--RNIPCAVTRRNNLRRAFREYAAKFDPCQCAPCPNNGRP 532
Query: 1609 VLKESRCDCICPAGFQGSACE--VTNRKNVPIDGKWNCWSDWSPCSGG-RKTRRRQCNNP 1779
VL + C C+C +G G CE + K+ +DG W CWS WS C +++R R+CNNP
Sbjct: 533 VLSGTECLCVCQSGTYGDNCERRAPDYKSNAVDGNWGCWSSWSTCDATYKRSRTRECNNP 592
Query: 1780 PPQNGGSPCLGPASKTLNC 1836
P+ GG PC G + +C
Sbjct: 593 APRQGGKPCDGERRQEEHC 611
>ref|NP_999447.1| complement component C7 precursor [Sus scrofa].
Length = 843
Score = 257 bits (657), Expect = 2e-68
Identities = 168/544 (30%), Positives = 257/544 (47%), Gaps = 14/544 (2%)
Frame = +1
Query: 247 TPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRSQV 426
+P++C+ S++ W+ C+ C K + R + Q+ G PC S E + C R C ++
Sbjct: 24 SPVNCQWDSYAPWSECNGCTKTQTRRRPVAVYGQYGGHPCVGSTFETQSCEPTRGCPTEE 83
Query: 427 RC-EGFVCAQTGRCINRRLLCNGDNDCG-DQSDEANCKRIYKKCQQEMDQYWA-IGSLAS 597
C E F C +G+CI++ L+CNGD+DC D +DE C+ + ++ + I +
Sbjct: 84 GCGERFRCF-SGQCISKSLVCNGDSDCEEDSADEDRCEDSESRPSCDLSKPPPNIELTGN 142
Query: 598 GINLFTNNLEGPVLDHRYYAGACSPHYILNTR--FRKPYNVENFNPQTQGKYDFVLTEYE 771
G N T VL+ + + G C + + R +R NV ++ Q + DF Y
Sbjct: 143 GYNALTGQFRNRVLNTKSFGGQCRKVFSGDGRDFYRLSGNVLSYTFQVKVNNDFNYEFYN 202
Query: 772 SYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKRFSHTKS-TFLH 948
S + ++ +T +F F SS+S + ++T KS L
Sbjct: 203 STWSYAKHTSTE-------HTSSSKGRVFIFSSSSSSSS---YYAKTYEILKKKSYQLLV 252
Query: 949 ARSDLEVARYKLKSRN-LMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGV 1125
++ +EVA++ + L L F + + LP Y Y YR L +GTHY+ LGG
Sbjct: 253 VQNTVEVAQFINNNPEFLQLAESFWKELSYLPPLYDYSAYRRLIDQYGTHYLQSGSLGGE 312
Query: 1126 YEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCKDILNEIKDR 1305
Y+ ++ E + +D +D CA + S HKCK + +K
Sbjct: 313 YKVLFYVDSEKVAESDLGSEDKKKCAS---------SHISFLFKSSKHKCKAMEEALKSA 363
Query: 1306 NKRSSMVNDLVVLVRGGASEHITALAYKDLPTADLMQE----WGDAVQYNPDIIKIKAEP 1473
+ S V V VRGG ++ L+Y +L D ++ W +V P +IK K P
Sbjct: 364 SGTQSNVLRGVPFVRGGRPGFVSGLSYLELDNPDGNKQRYSSWAGSVTDLPQVIKQKLTP 423
Query: 1474 LYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAGF 1653
LYELV A S + +KRALEE+ E SCHC PCQ G+ ++ ++C C C
Sbjct: 424 LYELVKEVPCA--SVKRLYLKRALEEYLDEFDSCHCQPCQNGGMASVEGTQCQCHCKPNT 481
Query: 1654 QGSACE---VTNRKNVPIDGKWNCWSDWSPCSGGRKTRRRQCNNPPPQNGGSPCLGPASK 1824
G ACE + IDG W+CWS W PC+ G+KTR R+CNNPPP GG C+G S+
Sbjct: 482 FGVACEQGVLVGDHAGGIDGGWSCWSSWGPCAQGKKTRSRKCNNPPPSGGGKSCIGETSE 541
Query: 1825 TLNC 1836
+ C
Sbjct: 542 SRQC 545
>ref|NP_001090917.1| complement component C9 [Sus scrofa].
Length = 543
Score = 194 bits (494), Expect = 1e-49
Identities = 140/478 (29%), Positives = 219/478 (45%), Gaps = 35/478 (7%)
Frame = +1
Query: 241 TLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRS 420
T +PIDC +S W W+ CDPC K+ +R S+ QF+G+ C + + CV PC
Sbjct: 37 TPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCED 96
Query: 421 -QVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYK-KCQQEMDQYWAIGSLA 594
+ C TGRCI RRLLCNGDNDCGD SDE +C + C++ + + + A
Sbjct: 97 LEEDCGSDFQCGTGRCIKRRLLCNGDNDCGDFSDEDDCDSDPRPPCRERVVEESELARTA 156
Query: 595 S-GINLFTNNLEGPVLDHRYYAGACSPHYILN--TRFRKPYNVENFNPQTQGKYDFVLTE 765
GIN+ + D+ YY G C N T +RKP+NV +T+ +F TE
Sbjct: 157 GYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNF-RTE 215
Query: 766 Y-------------ESYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGK---R 897
Y E S+F ++T +S K R
Sbjct: 216 YHERQIQVLKTIIEEKKSNFNADLTIKFTPTEAIEQLKSKNVELANEENSNPMNNKAHFR 275
Query: 898 F-ISRTKRF-------SHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYS 1053
F S+T+ + S + FLH + + + R+ ++ R++ML FL VK LP Y
Sbjct: 276 FTYSKTETYKLLLSYSSKKEKIFLHVKGVIHLGRFVMRKRDVMLTKTFLDDVKYLPSTYE 335
Query: 1054 YGEYRDLFRDFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAI 1233
GEY +GTHY + LGG+YE +++K M L+DVH C GF + +++
Sbjct: 336 KGEYFAFLETYGTHYSSSGSLGGLYELIYVLDKATMTEKGIELRDVHRCL--GFNLDLSL 393
Query: 1234 E-EVYIKLGVSVHKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAYKDLPTADL 1410
V IK + C + + ++D++ +RGG ++ T L K L A +
Sbjct: 394 NFGVEIKGKIDSENCLKRGDGKTENIMNDDFIDDVISFIRGGTRKYATELKEKLLKGAKM 453
Query: 1411 MQ-----EWGDAVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEIS 1569
+ W ++ P +I K P+Y+L+ + +QN++RA+E++ E +
Sbjct: 454 INVTDFVNWASSLNDAPVLINQKLSPIYDLI-PVKLNDAHLKRQNLERAIEDYINEFN 510
>ref|XP_003359813.1| PREDICTED: complement component C6-like [Sus scrofa].
Length = 267
Score = 120 bits (301), Expect = 3e-27
Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 3/192 (1%)
Frame = +1
Query: 199 ESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSD 378
+ L ++TR + PI+C L + W+ CDPC +K+++ S+L P+QF G+PC
Sbjct: 63 DRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPL 122
Query: 379 KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQ 555
C+ ++ C+ +V C+ +GRCI +L CNG+NDCGD SDE NC R C
Sbjct: 123 MTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS 182
Query: 556 QEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACS--PHYILNTRFRKPYNVENFNP 729
++ + ++ + +G ++ G VL + + G C + FR P N+EN +
Sbjct: 183 RKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVDF 242
Query: 730 QTQGKYDFVLTE 765
+ G D +T+
Sbjct: 243 EINGLSDGAITK 254
>ref|XP_003130436.2| PREDICTED: hemicentin-1-like [Sus scrofa].
Length = 652
Score = 65.5 bits (158), Expect = 1e-10
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 11/68 (16%)
Frame = +1
Query: 1642 PAGFQGSACE-------VTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQ 1788
P F GS C+ V N ++ PIDGKW WS WS C+ GG + R R C++P PQ
Sbjct: 103 PPSFDGSYCDGTETQMQVCNERHCPIDGKWTTWSSWSACTVSCGGGARQRTRDCSDPAPQ 162
Query: 1789 NGGSPCLG 1812
GG+ C G
Sbjct: 163 YGGNKCEG 170
Score = 64.7 bits (156), Expect = 2e-10
Identities = 35/91 (38%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Frame = +1
Query: 1597 NGVPVLKESRCDCICPAGFQGSAC-------EVTNRKNVPIDGKWNCWSDWSPCS----G 1743
NG + + CD P+ G AC + N P+DG W W WS CS G
Sbjct: 203 NGGQMRRYRTCDNPRPSN-GGRACGGPDSQIQRCNTDLCPVDGSWGSWQSWSWCSASCGG 261
Query: 1744 GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G KTR+R CNNP P G PC G A++ C
Sbjct: 262 GEKTRKRLCNNPVPSKSGRPCPGDATQVSRC 292
Score = 59.7 bits (143), Expect = 6e-09
Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Frame = +1
Query: 1630 DCICPAG-FQGSACEVT-------NRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCN 1773
DC PA + G+ CE + N + P G W+ WS W CS GG+ R R C+
Sbjct: 155 DCSDPAPQYGGNKCEGSDVQSDFCNSDSCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCD 214
Query: 1774 NPPPQNGGSPCLGPASKTLNC 1836
NP P NGG C GP S+ C
Sbjct: 215 NPRPSNGGRACGGPDSQIQRC 235
Score = 50.1 bits (118), Expect = 5e-06
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 1660 SACEVTNRKNVPIDGKWNCWSDWSPCSG----GRKTRRRQCNNPPPQNGGSPCLGPASKT 1827
+AC+V++ + G W+ W W CS G +TR R CNNPPP GS C G ++
Sbjct: 62 TACDVSSDT---VHGAWSTWQPWGTCSASCGKGTQTRTRLCNNPPPSFDGSYCDGTETQM 118
Query: 1828 LNC 1836
C
Sbjct: 119 QVC 121
>ref|XP_003133422.1| PREDICTED: LOW QUALITY PROTEIN: netrin receptor UNC5D-like [Sus
scrofa].
Length = 962
Score = 59.7 bits (143), Expect = 6e-09
Identities = 34/82 (41%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 1615 KESRCDCICPAGFQGSA-CE------VTNRKNVPIDGKWNCWSDWSPCSGG-RKTRRRQC 1770
K SR C PA G A CE +T P+DG W WS+WS CS R R+C
Sbjct: 283 KRSRT-CTNPAPLNGGAFCEGMSVQKITCTSLCPVDGSWEVWSEWSVCSPECEHLRIREC 341
Query: 1771 NNPPPQNGGSPCLGPASKTLNC 1836
PPP+NGG C G + ++ NC
Sbjct: 342 TAPPPRNGGKFCEGLSQESENC 363
Score = 51.6 bits (122), Expect = 2e-06
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Frame = +1
Query: 1690 VPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC*GR---E 1848
V ++G W+ W++WS C+ G + R R C NP P NGG+ C G + + + C +
Sbjct: 258 VYVNGGWSSWTEWSACNVRCGRGWQKRSRTCTNPAPLNGGAFCEGMSVQKITCTSLCPVD 317
Query: 1849 SF*RVMLLWAAHSESSEPLRTPAQLTSTPPPTWGLAHRGGKGC 1977
V W+ S E LR + T+ PP GGK C
Sbjct: 318 GSWEVWSEWSVCSPECEHLRI-RECTAPPP------RNGGKFC 353
>ref|XP_003121123.2| PREDICTED: thrombospondin-2-like [Sus scrofa].
Length = 1085
Score = 58.2 bits (139), Expect = 2e-08
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +1
Query: 1693 PIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
P+DG+W+ WS WS C+ GG + R R CN+P PQ+GG C+G + C
Sbjct: 405 PVDGRWSPWSPWSACTVTCAGGIRERTRVCNSPEPQHGGKDCVGDVKEQQMC 456
Score = 53.1 bits (126), Expect = 6e-07
Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 24/103 (23%)
Frame = +1
Query: 1606 PVLKESRCDCICPAGFQ--GSACEVTNRK------------------NVPIDGKWNCWSD 1725
P + + C C G Q G +C+VT+ + DG W+ WS
Sbjct: 299 PWAEWTECSATCGPGTQQRGRSCDVTSNTCLGPSIQTRACSLGKCDHRIRQDGGWSHWSP 358
Query: 1726 WSPCSG----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC*G 1842
WS CS G TR R CN+P PQ GG C G +T C G
Sbjct: 359 WSSCSVTCGVGNITRIRLCNSPVPQMGGRGCKGSGRETRACQG 401
>ref|XP_001927477.1| PREDICTED: thrombospondin-1 [Sus scrofa].
Length = 1170
Score = 57.8 bits (138), Expect = 2e-08
Identities = 36/95 (37%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 1564 ISSCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCS- 1740
I C+ Q NG P E+R C Q AC PI+G W WS W CS
Sbjct: 459 IRLCNSPSPQMNGKPCEGEARETKAC----QRDAC--------PINGGWGPWSPWDICSV 506
Query: 1741 ---GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
GG + R R CNNP PQ GG C+G ++ C
Sbjct: 507 TCGGGVQRRSRLCNNPAPQFGGKDCVGDETENQIC 541
Score = 55.1 bits (131), Expect = 2e-07
Identities = 36/95 (37%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Frame = +1
Query: 1579 CAPCQGNGVPVLKESRCDCI---CP-AGFQGSACEVTN-RKNVPIDGKWNCWSDWSPCS- 1740
C+ GNG+ S CD + C + Q C + K DG W+ WS WS CS
Sbjct: 391 CSVTCGNGIQQRGRS-CDSLNNRCEGSSVQTRTCHIQECDKRFKQDGGWSHWSPWSSCSV 449
Query: 1741 ---GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G TR R CN+P PQ G PC G A +T C
Sbjct: 450 TCGDGVITRIRLCNSPSPQMNGKPCEGEARETKAC 484
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 53,509,177
Number of extensions: 1610523
Number of successful extensions: 5718
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 5591
Number of HSP's successfully gapped: 34
Length of query: 704
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 598
Effective length of database: 8,704,850
Effective search space: 5205500300
Effective search space used: 5205500300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008835
(2114 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598643.1| complement component C8 beta chain precursor [M... 911 0.0
Alignment gi|NP_666260.1| complement component C8 alpha chain precursor [... 355 8e-98
Alignment gi|NP_057913.2| complement component 6 [Mus musculus]. 294 2e-79
Alignment gi|NP_001230766.1| complement component C7 [Mus musculus]. 240 4e-63
Alignment gi|NP_038513.1| complement component C9 [Mus musculus]. 236 4e-62
Alignment gi|NP_001019891.2| hemicentin 1 [Mus musculus]. 75 3e-13
Alignment gi|XP_003086563.1| PREDICTED: SCO-spondin-like isoform 4 [Mus m... 60 7e-09
Alignment gi|XP_003086560.1| PREDICTED: SCO-spondin-like isoform 1 [Mus m... 60 7e-09
Alignment gi|XP_003086561.1| PREDICTED: SCO-spondin-like isoform 2 [Mus m... 60 7e-09
Alignment gi|XP_003086562.1| PREDICTED: SCO-spondin-like isoform 3 [Mus m... 60 7e-09
>ref|NP_598643.1| complement component C8 beta chain precursor [Mus musculus].
Length = 589
Score = 911 bits (2354), Expect = 0.0
Identities = 427/586 (72%), Positives = 481/586 (82%)
Frame = +1
Query: 79 GTWAWRMPAKLFLLCAALGCLSLPGSRGERPHSLESNAVNESLGKSRQTRSVDVTLTPID 258
G WR AK LLCA LGCL PGSRG +P E+ AVN SL KSR RSV PID
Sbjct: 4 GAQVWRALAKSCLLCATLGCLHFPGSRGGKPDFFETKAVNGSLVKSRPVRSVAEAPAPID 63
Query: 259 CELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRSQVRCEG 438
CELS+WSSWT CDPCQKKRYRH LLRPSQF+GE C SDKEVEDCV+N+PCRSQVRCEG
Sbjct: 64 CELSTWSSWTACDPCQKKRYRHTYLLRPSQFYGELCDLSDKEVEDCVTNQPCRSQVRCEG 123
Query: 439 FVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQYWAIGSLASGINLFTN 618
FVCAQTGRC+NRRLLCNGDNDCGDQSDEANC+RIYK CQ+EM+QYWAI LASGINLFTN
Sbjct: 124 FVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKNCQREMEQYWAIDRLASGINLFTN 183
Query: 619 NLEGPVLDHRYYAGACSPHYILNTRFRKPYNVENFNPQTQGKYDFVLTEYESYSDFEQNV 798
EGPVLDHRYYAG CSPHYIL+T FRKPYNVE++ PQT+ +Y+F LTEYESYSDFE+ V
Sbjct: 184 TFEGPVLDHRYYAGGCSPHYILDTNFRKPYNVESYTPQTKCEYEFTLTEYESYSDFERLV 243
Query: 799 TTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKRFSHTKSTFLHARSDLEVARY 978
+ + GI S++GK +++RTKRF+HT+S FLHARS LEVA Y
Sbjct: 244 IEKKTHMFNFTSGFKVDGVMDLGIKVESNEGKNYVTRTKRFAHTQSKFLHARSVLEVAHY 303
Query: 979 KLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGVYEYTLIMNKEA 1158
KLKSR+LMLHYEFLQRVK LPLEYSYGEYRDL RDFGTH+ITEAVLGG+YEYTLIMNK+A
Sbjct: 304 KLKSRSLMLHYEFLQRVKSLPLEYSYGEYRDLLRDFGTHFITEAVLGGIYEYTLIMNKDA 363
Query: 1159 MERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCKDILNEIKDRNKRSSMVNDLV 1338
ME+ DY+L V ACA F IG + +VY+K+GVS KC DI+ EI +RNKRS+MV DLV
Sbjct: 364 MEQGDYTLSHVTACAGGSFGIGGMVYKVYVKVGVSAKKCSDIMKEINERNKRSTMVEDLV 423
Query: 1339 VLVRGGASEHITALAYKDLPTADLMQEWGDAVQYNPDIIKIKAEPLYELVTAADFAYSST 1518
VLVRGG SE ITALAYK+LPT +LM+ WGDAV+YNP IIKIKAEPLYELVTA DFAYSST
Sbjct: 424 VLVRGGTSEDITALAYKELPTPELMEAWGDAVKYNPAIIKIKAEPLYELVTATDFAYSST 483
Query: 1519 VKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPI 1698
VKQN+K+ALEEF+ E+SSC CAPC+GNGVPVLK SRC+CICP GFQG+ACEVT RK++PI
Sbjct: 484 VKQNLKKALEEFQSEVSSCRCAPCRGNGVPVLKGSRCECICPGGFQGTACEVTYRKDIPI 543
Query: 1699 DGKWNCWSDWSPCSGGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
DGKW+CWSDWS CSGG KTR RQCNNP P GGSPC GPAS+TLNC
Sbjct: 544 DGKWSCWSDWSACSGGHKTRHRQCNNPAPHKGGSPCSGPASETLNC 589
>ref|NP_666260.1| complement component C8 alpha chain precursor [Mus musculus].
Length = 587
Score = 355 bits (911), Expect = 8e-98
Identities = 190/568 (33%), Positives = 303/568 (53%), Gaps = 28/568 (4%)
Frame = +1
Query: 217 RQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDC 396
R TR+V T + C+LS W WT C PCQ K+YR+ SLL+PS+F G C + C
Sbjct: 27 RVTRAV--TPQAVSCQLSDWYKWTDCFPCQDKKYRYRSLLQPSKFGGTICSGDIWDEASC 84
Query: 397 VSNRPCRSQVRC-EGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQY 573
S PC Q +C + F C +TGRC+ R L+CNGDNDC D SDE++C+ + + + + QY
Sbjct: 85 DSPTPCLRQAQCGQDFQCRETGRCLKRHLVCNGDNDCLDGSDESDCEDV-RVTEDDCHQY 143
Query: 574 WAI-GS--LASGINLFTNNLEGPVLDHRYYAGACSPHYILNTR----------------- 693
I GS A G N+ T V D +YY G C Y + R
Sbjct: 144 EPIPGSERAALGYNILTQEEAQSVYDAKYYGGQCETVYNGDWRKLRYDPTCERLYYGEDE 203
Query: 694 --FRKPYNVENFNPQTQGKYDFVLTEYESYSDFEQNVTTA-AXXXXXXXXXXXXXXMFEF 864
FRKPYN ++ + Y+ +D ++ +
Sbjct: 204 KYFRKPYNFLKYHFEALADTSISSEFYDDANDLFFHIKNGKSHSAGVTVGVAPVKSPVSI 263
Query: 865 GISSTSDKGKRFISRTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPL 1044
++ + K F+++ +++ + F+ + ++ A++K++ N++L LQ + +LP
Sbjct: 264 EVTGSGSKASSFLNKLNKYNEKRYGFMRVSTKIQTAQFKMRRNNIVLDEGMLQSLMELPE 323
Query: 1045 EYSYGEYRDLFRDFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIG 1224
+++YG Y D+GTHYIT +GG+YEY ++++KE M+ ++ +V C G IG
Sbjct: 324 QFNYGMYAKFINDYGTHYITSGTMGGIYEYVMVLDKEKMKTEGTTVDEVQKCIGGG--IG 381
Query: 1225 VAIEEVYIK-LGVSVHKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAYKDLPT 1401
+ I++ I+ +G+S C++ + +D K+ + V D++ V+GG+S + L + +
Sbjct: 382 IGIKDSTIEGVGISGEFCENSGDGDRDIRKKITGVEDIISRVQGGSSVWGSVLTHNS--S 439
Query: 1402 ADLMQEWGDAVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHC 1581
A Q WG +++YNP +I + +P+Y+L+ + T +QN++RAL+++ E ++C C
Sbjct: 440 AITYQSWGRSLKYNPVVIDFEMQPIYQLLRHTNLGPLETKRQNLRRALDQYLMEFNACRC 499
Query: 1582 APCQGNGVPVLKESRCDCICPAGFQGSACE---VTNRKNVPIDGKWNCWSDWSPCSGGRK 1752
PC NG P+L + C C C G QG ACE + K+ G W+CWS WS C GG +
Sbjct: 500 GPCFNNGEPILDGTNCRCQCSMGRQGLACERTVIEGLKDFKAAGHWSCWSSWSECRGGSQ 559
Query: 1753 TRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
RRRQCNNPPP+NGG+PCLG +T C
Sbjct: 560 ERRRQCNNPPPKNGGTPCLGRNLQTQAC 587
>ref|NP_057913.2| complement component 6 [Mus musculus].
Length = 769
Score = 294 bits (753), Expect = 2e-79
Identities = 171/553 (30%), Positives = 279/553 (50%), Gaps = 13/553 (2%)
Frame = +1
Query: 217 RQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDC 396
++TR ++ PI+C L + +W+ CDPC +K+ + S+LRPSQF G+PC + C
Sbjct: 68 QETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEPLVTFQPC 127
Query: 397 VSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQY 573
V ++ C+ + C+ +GRCI +L CNG+NDCGD SDE NC R C +
Sbjct: 128 VPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVCTRIYTPI 187
Query: 574 WAIGSLASGINLFTNNLEGPVLDHRYYAGACSPHYILNTRFRKPY----NVENFNPQTQG 741
++ + +G + G VLD+ + G C + +R PY N+EN N + Q
Sbjct: 188 PSVQLMGTGFHFLAGEPRGEVLDNSFTGGICK--LVKTSRASNPYRVSANLENVNFEVQT 245
Query: 742 KYDFVLTE-YESYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKR 918
D + TE Y++ FE+N + +F F + ++ +
Sbjct: 246 IEDDLKTEFYKNLISFEKNKNEDS-LSVDERTKFFPIPIFHFSEKNEHSHYSSAFNKVIK 304
Query: 919 FSHTK-STFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTH 1095
SH K S+F+ ++V + +K+ +L L FL+ + LPLEY+ Y +F DFGTH
Sbjct: 305 ASHKKDSSFIRIHKLIKVLNFTMKATDLQLSDVFLKALVHLPLEYNSAVYSRIFDDFGTH 364
Query: 1096 YITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKC 1275
Y T LGG Y+ +++ ++ + + ++ C Q+ K ++ +Y+++
Sbjct: 365 YFTSGSLGGKYDLIYQFSRQELQNSGLTEEEAQNCVQYETK---KLKFLYMEIHKEDTCT 421
Query: 1276 KDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAYK---DLPTADLMQEWGDAVQYNP 1446
K+ L+E K + LV+GG S+ ALA++ P ++ EW ++V+ NP
Sbjct: 422 KNKLSE-KYGGSFLQGSEKSISLVQGGRSQQAAALAWEKGTSGPEENVYSEWLESVKENP 480
Query: 1447 DIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESR 1626
++ K P+ +LV + + T + N++RAL+E+ + C CAPC NG P L +
Sbjct: 481 AVVDYKLAPITDLV--RNIPCAVTKRNNLRRALQEYAAKFDPCQCAPCPNNGRPRLSGTE 538
Query: 1627 CDCICPAGFQGSACE--VTNRKNVPIDGKWNCWSDWSPCSGG-RKTRRRQCNNPPPQNGG 1797
C C+C +G G CE K+ +DG W CWS WS C+ R++R R+CNNP PQ GG
Sbjct: 539 CLCVCQSGTYGENCERRSPGYKSDAVDGNWGCWSSWSACNAAYRRSRTRECNNPAPQRGG 598
Query: 1798 SPCLGPASKTLNC 1836
C G + +C
Sbjct: 599 QSCGGKDQQEEDC 611
>ref|NP_001230766.1| complement component C7 [Mus musculus].
Length = 845
Score = 240 bits (612), Expect = 4e-63
Identities = 159/560 (28%), Positives = 251/560 (44%), Gaps = 30/560 (5%)
Frame = +1
Query: 247 TPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRSQV 426
+P++C+ S+ W+ C+ C K + R S+ Q+ G PC S E + C R C ++
Sbjct: 24 SPVNCKWDSYGPWSECNGCTKTQTRRRSVAVYGQYGGYPCEGSAFETQSCKPERGCPTEE 83
Query: 427 RCEGFVCAQTGRCINRRLLCNGDNDC-GDQSDEANCKRIYKKCQQEMDQYWAIGSLASGI 603
C +G+CI++ L+CNGD DC D +DE C+ + I G
Sbjct: 84 GCGDRFRCFSGQCISKSLVCNGDPDCEEDGADEDKCENVANPSCNIDKPPPNIELTGYGY 143
Query: 604 NLFTNNLEGPVLDHRYYAGACSPHYILNTR--FRKPYNVENFNPQTQGKYDFVLTEYESY 777
N+ T + V++ + + G C + + + +R N+ ++ Q + DF Y S
Sbjct: 144 NVVTGQGKKRVINTKSFGGQCRKVFSGDGKDFYRLSGNILSYTFQVKVDNDFNYEFYNSS 203
Query: 778 SDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKRFSHTKSTFLHARS 957
+ I TS + F S FSH+++T+ H +
Sbjct: 204 WSY---------------------------IKHTSTEQNTFYSWKGLFSHSRNTYGHGSA 236
Query: 958 DLEVARYKLKSRNLML-------------HYEFLQ-------RVKQLPLEYSYGEYRDLF 1077
E+ K+KS L++ + EFLQ + LP Y Y YR L
Sbjct: 237 KEEIDT-KMKSYKLLVVQNTVEVAQFTNNNPEFLQVAEPFWKELSHLPTLYDYSAYRRLI 295
Query: 1078 RDFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLG 1257
+GTHY+ LGG Y ++ + + + +AC+ F+ ++
Sbjct: 296 DQYGTHYLQSGSLGGEYRVLFYVDSGSAKETGFQSDQDNACSSADFQ--------FLFTS 347
Query: 1258 VSVHKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAYKDL--PTADLMQ--EWG 1425
+ +C L K + + LVRGG S + L++ DL P + + W
Sbjct: 348 SADQRCMKQLETEKSTSGNKGRLLRGKPLVRGGDSGFVADLSFLDLDNPAGNKQRYSSWA 407
Query: 1426 DAVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGV 1605
+V P +IK K PLYELV A S + +KRA+EE+ E CHC PCQ G+
Sbjct: 408 GSVTRLPQVIKEKLAPLYELVKEVPCA--SVKRLYLKRAIEEYFDEFDPCHCRPCQNGGL 465
Query: 1606 PVLKESRCDCICPAGFQGSACE---VTNRKNVPIDGKWNCWSDWSPCSGGRKTRRRQCNN 1776
++ E++C C+C GSACE + + +DG WNCWS WSPC G++TR R+CNN
Sbjct: 466 AIVVETQCQCLCKPYTFGSACEQGVLVGDQAGGVDGGWNCWSSWSPCVQGKRTRSRECNN 525
Query: 1777 PPPQNGGSPCLGPASKTLNC 1836
PPP++ G CLG +++ C
Sbjct: 526 PPPRDDGKSCLGETTESKQC 545
>ref|NP_038513.1| complement component C9 [Mus musculus].
Length = 561
Score = 236 bits (603), Expect = 4e-62
Identities = 152/510 (29%), Positives = 234/510 (45%), Gaps = 35/510 (6%)
Frame = +1
Query: 250 PIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRS-QV 426
PIDC +S WS+W+ CDPC K+R+R S+L QF+G+ C + + C + C Q
Sbjct: 51 PIDCRMSPWSNWSECDPCLKQRFRSRSILAFGQFNGKSCVDVLGDRQGCEPTQECEEIQE 110
Query: 427 RCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYK-KCQQEMDQYWAIGSLAS-G 600
C +TGRCI RRLLCNGDNDCGD SDE +C + C+ + + +G A G
Sbjct: 111 NCGNDFQCETGRCIKRRLLCNGDNDCGDYSDENDCDDDPRTPCRDRVAEESELGLTAGYG 170
Query: 601 INLFTNNLEGPVLDHRYYAGACSPHYILNTRFRKPYNVENFNPQTQGKYDFVLTEYESY- 777
IN+ D+ +Y G C T +RKP+NV + +T+ F Y+ +
Sbjct: 171 INILGMEPLRTPFDNEFYNGLCDRVRDEKTYYRKPWNVVSLIYETKADKSFRTENYDEHL 230
Query: 778 -----------SDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDK---------GKR 897
S+F + E T+ GK
Sbjct: 231 EVFKAINREKTSNFNADFALKFSATEVPEKGAGEVSPAEHSSKPTNISAKFKFSYFMGKN 290
Query: 898 FISRTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLF 1077
F + FS +K F+H R +++ R+ +++R+++L FL VK LP Y GEY
Sbjct: 291 FRRLSSYFSQSKKMFVHLRGVVQLGRFVMRNRDVVLRSTFLDDVKALPTSYEKGEYFGFL 350
Query: 1078 RDFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAI------EE 1239
+GTHY T LGG YE +++K +M+ L DV C GF + + I ++
Sbjct: 351 ETYGTHYSTSGSLGGQYEIVYVLDKASMKEKGVDLNDVKHCL--GFNMDLRIPLQDDLKD 408
Query: 1240 VYIKLGVSVHKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAYKDL---PTADL 1410
+ V+ C N R ++++D++ +RGG E L K L T D
Sbjct: 409 ASVTASVNADGCIKTDNGKTVNITRDNIIDDVISFIRGGTREQAILLKEKILRGDKTFDK 468
Query: 1411 --MQEWGDAVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCA 1584
W ++ P +I + P+Y L+ + KQN+++A+E++ E S+ C
Sbjct: 469 TDFANWASSLANAPALISQRMSPIYNLI-PLKIKDAYIKKQNLEKAVEDYIDEFSTKRCY 527
Query: 1585 PCQGNGVPVLKESRCDCICPAGFQGSACEV 1674
PC G +L + +C C CP F+G ACE+
Sbjct: 528 PCLNGGTIILLDGQCLCSCPMMFRGMACEI 557
>ref|NP_001019891.2| hemicentin 1 [Mus musculus].
Length = 5634
Score = 74.7 bits (182), Expect = 3e-13
Identities = 54/146 (36%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Frame = +1
Query: 1579 CAPCQGNGVPVLKESR-CDCICPAG----FQGSACEVTNRKN--VPIDGKWNCWSDWSPC 1737
C+ G G+ K SR CD PA QG+ E + N P+DG W+ WS W C
Sbjct: 4540 CSVTCGKGIQ--KRSRLCDNPPPANGGRPCQGADSEARHCHNKLCPVDGHWSEWSFWEDC 4597
Query: 1738 SG----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC*GR----ESF*RVMLLWAAHSES 1893
S G +TR R C+NPP Q+GG PC G A +T+ C R W+A S+S
Sbjct: 4598 SRSCGHGNQTRTRTCSNPPAQHGGRPCEGHAVETIMCNIRPCPVHGVWNAWQPWSACSKS 4657
Query: 1894 -SEPLRTPAQLTSTPPPTWGLAHRGG 1968
+ +T +L + PPP++G AH G
Sbjct: 4658 CGKGSQTRMRLCNNPPPSFGGAHCSG 4683
Score = 63.2 bits (152), Expect = 8e-10
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 27/136 (19%)
Frame = +1
Query: 1510 SSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKE--SRCDCIC-------------- 1641
S+ Q+ R E E C+ PC +GV + S C C
Sbjct: 4613 SNPPAQHGGRPCEGHAVETIMCNIRPCPVHGVWNAWQPWSACSKSCGKGSQTRMRLCNNP 4672
Query: 1642 PAGFQGSAC-------EVTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQ 1788
P F G+ C +V N ++ P+DG+W WS WS C+ GG + R R C++P PQ
Sbjct: 4673 PPSFGGAHCSGAETQMQVCNERHCPVDGRWATWSSWSACTVSCGGGARKRTRDCSDPVPQ 4732
Query: 1789 NGGSPCLGPASKTLNC 1836
GG+ C G ++ C
Sbjct: 4733 YGGNKCEGTGVQSDFC 4748
Score = 61.2 bits (147), Expect = 3e-09
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Frame = +1
Query: 1597 NGVPVLKESRCDCICPAGFQGSAC-------EVTNRKNVPIDGKWNCWSDWSPCS----G 1743
NG + + CD P+ G AC + N P+DG W W WS CS G
Sbjct: 4773 NGGQMRRYRTCDNPRPSN-GGRACGGPDTQIQRCNTDMCPVDGSWGTWHSWSHCSVSCGG 4831
Query: 1744 GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G +TR+R C+NP P GG C G A++ C
Sbjct: 4832 GERTRKRLCDNPVPTKGGRSCPGDATQVSRC 4862
Score = 58.2 bits (139), Expect = 3e-08
Identities = 45/135 (33%), Positives = 56/135 (41%), Gaps = 19/135 (14%)
Frame = +1
Query: 1630 DCICPAG-FQGSACEVT-------NRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCN 1773
DC P + G+ CE T N P G W+ WS W CS GG+ R R C+
Sbjct: 4725 DCSDPVPQYGGNKCEGTGVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCD 4784
Query: 1774 NPPPQNGGSPCLGPASKTLNC*GRESF*RVMLLWAA-HSESSEPL------RTPAQLTST 1932
NP P NGG C GP ++ C V W HS S + RT +L
Sbjct: 4785 NPRPSNGGRACGGPDTQIQRC--NTDMCPVDGSWGTWHSWSHCSVSCGGGERTRKRLCDN 4842
Query: 1933 PPPTWGLAHRGGKGC 1977
P PT +GG+ C
Sbjct: 4843 PVPT-----KGGRSC 4852
Score = 54.3 bits (129), Expect = 4e-07
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +1
Query: 1690 VPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
V + G ++ WS W PCS G + R R C+NPPP NGG PC G S+ +C
Sbjct: 4525 VQVHGGFSLWSAWRPCSVTCGKGIQKRSRLCDNPPPANGGRPCQGADSEARHC 4577
>ref|XP_003086563.1| PREDICTED: SCO-spondin-like isoform 4 [Mus musculus].
Length = 5000
Score = 60.1 bits (144), Expect = 7e-09
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +1
Query: 1651 FQGSACEVTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPA 1818
F+ +C V + P+ G W W W+ CS GG ++R+R C +PPP+NGG+PC GP+
Sbjct: 2380 FRSQSCFV---QACPVAGAWAEWGPWTACSVSCGGGHQSRQRSCVDPPPKNGGAPCPGPS 2436
Query: 1819 SKTLNC 1836
+ C
Sbjct: 2437 HEKAPC 2442
Score = 57.8 bits (138), Expect(2) = 1e-08
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 1570 SCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCSG-- 1743
+C C Q G P +ES G Q N P+DG W+ W WS C
Sbjct: 3272 ACVCPAPQHGGSPCPEESG-----GTGVQHQMEACPNATACPVDGAWSPWGPWSSCDACL 3326
Query: 1744 GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G+ R R C++PP +GG PCLG ++ C
Sbjct: 3327 GQSYRSRVCSHPPISDGGKPCLGGYQQSRPC 3357
Score = 21.2 bits (43), Expect(2) = 1e-08
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +3
Query: 1878 CPQ*EL*TLKNPGPAHLHTPSHLGPGPQGWEGLCLF 1985
C L + PG A + PG +GLC+F
Sbjct: 3384 CQDLSLGSTCQPGSAGCQSGCGCPPGQLSQDGLCVF 3419
Score = 58.5 bits (140), Expect = 2e-08
Identities = 25/41 (60%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Frame = +1
Query: 1693 PIDGKWNCWSDWSPCS---GGRKTRRRQCNNPPPQNGGSPC 1806
P+DG+W+ WS WSPCS GG TR RQC PPQNGG C
Sbjct: 1628 PVDGEWSSWSPWSPCSEPCGGTTTRHRQCR--PPQNGGQDC 1666
Score = 58.5 bits (140), Expect = 2e-08
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +1
Query: 1678 NRKNVPIDGKWNCWSDWS----PCSGGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
N + P+ G W+ WS WS C GGR R R C++PPP+NGG+ C+G C
Sbjct: 3846 NLRACPVPGGWSHWSPWSWCDRSCGGGRSLRSRSCSSPPPKNGGTSCVGERHHVRPC 3902
>ref|XP_003086560.1| PREDICTED: SCO-spondin-like isoform 1 [Mus musculus].
Length = 5144
Score = 60.1 bits (144), Expect = 7e-09
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +1
Query: 1651 FQGSACEVTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPA 1818
F+ +C V + P+ G W W W+ CS GG ++R+R C +PPP+NGG+PC GP+
Sbjct: 2523 FRSQSCFV---QACPVAGAWAEWGPWTACSVSCGGGHQSRQRSCVDPPPKNGGAPCPGPS 2579
Query: 1819 SKTLNC 1836
+ C
Sbjct: 2580 HEKAPC 2585
Score = 57.8 bits (138), Expect(2) = 1e-08
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 1570 SCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCSG-- 1743
+C C Q G P +ES G Q N P+DG W+ W WS C
Sbjct: 3415 ACVCPAPQHGGSPCPEESG-----GTGVQHQMEACPNATACPVDGAWSPWGPWSSCDACL 3469
Query: 1744 GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G+ R R C++PP +GG PCLG ++ C
Sbjct: 3470 GQSYRSRVCSHPPISDGGKPCLGGYQQSRPC 3500
Score = 21.2 bits (43), Expect(2) = 1e-08
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +3
Query: 1878 CPQ*EL*TLKNPGPAHLHTPSHLGPGPQGWEGLCLF 1985
C L + PG A + PG +GLC+F
Sbjct: 3527 CQDLSLGSTCQPGSAGCQSGCGCPPGQLSQDGLCVF 3562
Score = 58.5 bits (140), Expect = 2e-08
Identities = 25/41 (60%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Frame = +1
Query: 1693 PIDGKWNCWSDWSPCS---GGRKTRRRQCNNPPPQNGGSPC 1806
P+DG+W+ WS WSPCS GG TR RQC PPQNGG C
Sbjct: 1751 PVDGEWSSWSPWSPCSEPCGGTTTRHRQCR--PPQNGGQDC 1789
Score = 58.5 bits (140), Expect = 2e-08
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +1
Query: 1678 NRKNVPIDGKWNCWSDWS----PCSGGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
N + P+ G W+ WS WS C GGR R R C++PPP+NGG+ C+G C
Sbjct: 3987 NLRACPVPGGWSHWSPWSWCDRSCGGGRSLRSRSCSSPPPKNGGTSCVGERHHVRPC 4043
>ref|XP_003086561.1| PREDICTED: SCO-spondin-like isoform 2 [Mus musculus].
Length = 5145
Score = 60.1 bits (144), Expect = 7e-09
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +1
Query: 1651 FQGSACEVTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPA 1818
F+ +C V + P+ G W W W+ CS GG ++R+R C +PPP+NGG+PC GP+
Sbjct: 2525 FRSQSCFV---QACPVAGAWAEWGPWTACSVSCGGGHQSRQRSCVDPPPKNGGAPCPGPS 2581
Query: 1819 SKTLNC 1836
+ C
Sbjct: 2582 HEKAPC 2587
Score = 57.8 bits (138), Expect(2) = 1e-08
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 1570 SCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCSG-- 1743
+C C Q G P +ES G Q N P+DG W+ W WS C
Sbjct: 3417 ACVCPAPQHGGSPCPEESG-----GTGVQHQMEACPNATACPVDGAWSPWGPWSSCDACL 3471
Query: 1744 GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G+ R R C++PP +GG PCLG ++ C
Sbjct: 3472 GQSYRSRVCSHPPISDGGKPCLGGYQQSRPC 3502
Score = 21.2 bits (43), Expect(2) = 1e-08
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +3
Query: 1878 CPQ*EL*TLKNPGPAHLHTPSHLGPGPQGWEGLCLF 1985
C L + PG A + PG +GLC+F
Sbjct: 3529 CQDLSLGSTCQPGSAGCQSGCGCPPGQLSQDGLCVF 3564
Score = 58.5 bits (140), Expect = 2e-08
Identities = 25/41 (60%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Frame = +1
Query: 1693 PIDGKWNCWSDWSPCS---GGRKTRRRQCNNPPPQNGGSPC 1806
P+DG+W+ WS WSPCS GG TR RQC PPQNGG C
Sbjct: 1751 PVDGEWSSWSPWSPCSEPCGGTTTRHRQCR--PPQNGGQDC 1789
Score = 58.5 bits (140), Expect = 2e-08
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +1
Query: 1678 NRKNVPIDGKWNCWSDWS----PCSGGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
N + P+ G W+ WS WS C GGR R R C++PPP+NGG+ C+G C
Sbjct: 3991 NLRACPVPGGWSHWSPWSWCDRSCGGGRSLRSRSCSSPPPKNGGTSCVGERHHVRPC 4047
>ref|XP_003086562.1| PREDICTED: SCO-spondin-like isoform 3 [Mus musculus].
Length = 5002
Score = 60.1 bits (144), Expect = 7e-09
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +1
Query: 1651 FQGSACEVTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPA 1818
F+ +C V + P+ G W W W+ CS GG ++R+R C +PPP+NGG+PC GP+
Sbjct: 2382 FRSQSCFV---QACPVAGAWAEWGPWTACSVSCGGGHQSRQRSCVDPPPKNGGAPCPGPS 2438
Query: 1819 SKTLNC 1836
+ C
Sbjct: 2439 HEKAPC 2444
Score = 57.8 bits (138), Expect(2) = 1e-08
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 1570 SCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCSG-- 1743
+C C Q G P +ES G Q N P+DG W+ W WS C
Sbjct: 3274 ACVCPAPQHGGSPCPEESG-----GTGVQHQMEACPNATACPVDGAWSPWGPWSSCDACL 3328
Query: 1744 GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G+ R R C++PP +GG PCLG ++ C
Sbjct: 3329 GQSYRSRVCSHPPISDGGKPCLGGYQQSRPC 3359
Score = 21.2 bits (43), Expect(2) = 1e-08
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +3
Query: 1878 CPQ*EL*TLKNPGPAHLHTPSHLGPGPQGWEGLCLF 1985
C L + PG A + PG +GLC+F
Sbjct: 3386 CQDLSLGSTCQPGSAGCQSGCGCPPGQLSQDGLCVF 3421
Score = 58.5 bits (140), Expect = 2e-08
Identities = 25/41 (60%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Frame = +1
Query: 1693 PIDGKWNCWSDWSPCS---GGRKTRRRQCNNPPPQNGGSPC 1806
P+DG+W+ WS WSPCS GG TR RQC PPQNGG C
Sbjct: 1626 PVDGEWSSWSPWSPCSEPCGGTTTRHRQCR--PPQNGGQDC 1664
Score = 58.5 bits (140), Expect = 2e-08
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +1
Query: 1678 NRKNVPIDGKWNCWSDWS----PCSGGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
N + P+ G W+ WS WS C GGR R R C++PPP+NGG+ C+G C
Sbjct: 3848 NLRACPVPGGWSHWSPWSWCDRSCGGGRSLRSRSCSSPPPKNGGTSCVGERHHVRPC 3904
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 71,141,116
Number of extensions: 1936778
Number of successful extensions: 8148
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 7869
Number of HSP's successfully gapped: 70
Length of query: 704
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 596
Effective length of database: 12,373,671
Effective search space: 7374707916
Effective search space used: 7374707916
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008835
(2114 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000057.1| complement component C8 beta chain preproprotei... 1041 0.0
Alignment gi|NP_000553.1| complement component C8 alpha chain precursor [... 335 1e-91
Alignment gi|NP_001108603.2| complement component C6 precursor [Homo sapi... 286 4e-77
Alignment gi|NP_000056.2| complement component C6 precursor [Homo sapiens]. 286 4e-77
Alignment gi|NP_000578.2| complement component C7 precursor [Homo sapiens]. 249 7e-66
Alignment gi|NP_001728.1| complement component C9 precursor [Homo sapiens]. 233 5e-61
Alignment gi|NP_114141.2| hemicentin-1 precursor [Homo sapiens]. 70 1e-11
Alignment gi|NP_940857.2| SCO-spondin precursor [Homo sapiens]. 62 3e-09
Alignment gi|NP_543148.2| netrin receptor UNC5D precursor [Homo sapiens]. 60 1e-08
Alignment gi|NP_003957.2| semaphorin-5A precursor [Homo sapiens]. 59 2e-08
>ref|NP_000057.1| complement component C8 beta chain preproprotein [Homo sapiens].
Length = 591
Score = 1041 bits (2693), Expect = 0.0
Identities = 486/590 (82%), Positives = 526/590 (89%)
Frame = +1
Query: 67 MKTSGTWAWRMPAKLFLLCAALGCLSLPGSRGERPHSLESNAVNESLGKSRQTRSVDVTL 246
MK S TWAWR P +LFLLCAALGCLSLPGSRGERPHS SNAVN+S KSRQ RSVDVTL
Sbjct: 1 MKNSRTWAWRAPVELFLLCAALGCLSLPGSRGERPHSFGSNAVNKSFAKSRQMRSVDVTL 60
Query: 247 TPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRSQV 426
PIDCELSSWSSWTTCDPCQKKRYR+A LL+PSQFHGEPC+FSDKEVEDCV+NRPC SQV
Sbjct: 61 MPIDCELSSWSSWTTCDPCQKKRYRYAYLLQPSQFHGEPCNFSDKEVEDCVTNRPCGSQV 120
Query: 427 RCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQYWAIGSLASGIN 606
RCEGFVCAQTGRC+NRRLLCNGDNDCGDQSDEANC+RIYKKCQ EMDQYW IGSLASGIN
Sbjct: 121 RCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGIGSLASGIN 180
Query: 607 LFTNNLEGPVLDHRYYAGACSPHYILNTRFRKPYNVENFNPQTQGKYDFVLTEYESYSDF 786
LFTN+ EGPVLDHRYYAG CSPHYILNTRFRKPYNVE++ PQTQGKY+F+L EYESYSDF
Sbjct: 181 LFTNSFEGPVLDHRYYAGGCSPHYILNTRFRKPYNVESYTPQTQGKYEFILKEYESYSDF 240
Query: 787 EQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKRFSHTKSTFLHARSDLE 966
E+NVT +FE GISS SD+GK +I RTKRFSHTKS FLHARSDLE
Sbjct: 241 ERNVTEKMASKSGFSFGFKIPGIFELGISSQSDRGKHYIRRTKRFSHTKSVFLHARSDLE 300
Query: 967 VARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGVYEYTLIM 1146
VA YKLK R+LMLHYEFLQRVK+LPLEYSYGEYRDLFRDFGTHYITEAVLGG+YEYTL+M
Sbjct: 301 VAHYKLKPRSLMLHYEFLQRVKRLPLEYSYGEYRDLFRDFGTHYITEAVLGGIYEYTLVM 360
Query: 1147 NKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCKDILNEIKDRNKRSSMV 1326
NKEAMER DY+L +VHACA++ FKIG AIEEVY+ LGVSV KC+ ILNEIKDRNKR +MV
Sbjct: 361 NKEAMERGDYTLNNVHACAKNDFKIGGAIEEVYVSLGVSVGKCRGILNEIKDRNKRDTMV 420
Query: 1327 NDLVVLVRGGASEHITALAYKDLPTADLMQEWGDAVQYNPDIIKIKAEPLYELVTAADFA 1506
DLVVLVRGGASEHIT LAY++LPTADLMQEWGDAVQYNP IIK+K EPLYELVTA DFA
Sbjct: 421 EDLVVLVRGGASEHITTLAYQELPTADLMQEWGDAVQYNPAIIKVKVEPLYELVTATDFA 480
Query: 1507 YSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRK 1686
YSSTV+QNMK+ALEEF+KE+SSCHCAPCQGNGVPVLK SRCDCICP G QG ACEV+ RK
Sbjct: 481 YSSTVRQNMKQALEEFQKEVSSCHCAPCQGNGVPVLKGSRCDCICPVGSQGLACEVSYRK 540
Query: 1687 NVPIDGKWNCWSDWSPCSGGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
N PIDGKWNCWS+WS CSG RKTR+RQCNNPPPQNGGSPC GPAS+TL+C
Sbjct: 541 NTPIDGKWNCWSNWSSCSGRRKTRQRQCNNPPPQNGGSPCSGPASETLDC 590
>ref|NP_000553.1| complement component C8 alpha chain precursor [Homo sapiens].
Length = 584
Score = 335 bits (858), Expect = 1e-91
Identities = 183/559 (32%), Positives = 285/559 (50%), Gaps = 27/559 (4%)
Frame = +1
Query: 241 TLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRS 420
T + C+LS+WS WT C PCQ K+YRH SLL+P++F G C + C S+ C
Sbjct: 33 TPAAVTCQLSNWSEWTDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVR 92
Query: 421 QVRC-EGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQEMDQYWAI-GS-- 588
Q +C + F C +TGRC+ R L+CNGD DC D SDE +C+ + + ++ QY I GS
Sbjct: 93 QAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDV-RAIDEDCSQYEPIPGSQK 151
Query: 589 LASGINLFTNNLEGPVLDHRYYAGACSPHYILNTR-------------------FRKPYN 711
A G N+ T V D YY G C Y R FRKPYN
Sbjct: 152 AALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKYFRKPYN 211
Query: 712 VENFNPQTQGKYDFVLTEYESYSDFEQNVT---TAAXXXXXXXXXXXXXXMFEFGISSTS 882
++ + Y++ +D V + + + G+S +
Sbjct: 212 FLKYHFEALADTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQ 271
Query: 883 DKGKRFISRTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGE 1062
D F++ +++ K F + ++ A +K++ ++ML LQ + +LP +Y+YG
Sbjct: 272 DTS--FLNELNKYNEKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGM 329
Query: 1063 YRDLFRDFGTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEE- 1239
Y D+GTHYIT +GG+YEY L+++K ME + +D+ C G +G+ E+
Sbjct: 330 YAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTC--FGGSLGIQYEDK 387
Query: 1240 VYIKLGVSVHKCKDILNEIKDRNKRSSMVNDLVVLVRGGASEHITALAYKDLPTADLMQE 1419
+ + G+S CK +R +++ V D++ VRGG+S LA + +
Sbjct: 388 INVGGGLSGDHCKKFGGGKTERARKAMAVEDIISRVRGGSSGWSGGLAQNR--STITYRS 445
Query: 1420 WGDAVQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGN 1599
WG +++YNP +I + +P++E++ +QN++RAL+++ E ++C C PC N
Sbjct: 446 WGRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLMEFNACRCGPCFNN 505
Query: 1600 GVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCSGGRKTRRRQCNNP 1779
GVP+L+ + C C C G G+ACE T + DG W+CWS WS C G + RRR+C+NP
Sbjct: 506 GVPILEGTSCRCQCRLGSLGAACEQTQTEGAKADGSWSCWSSWSVCRAGIQERRRECDNP 565
Query: 1780 PPQNGGSPCLGPASKTLNC 1836
PQNGG+ C G +T C
Sbjct: 566 APQNGGASCPGRKVQTQAC 584
>ref|NP_001108603.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 286 bits (733), Expect = 4e-77
Identities = 164/558 (29%), Positives = 274/558 (49%), Gaps = 12/558 (2%)
Frame = +1
Query: 199 ESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSD 378
E + ++TR + PI+C L + W+ CDPC +K+ + S+LRPSQF G+PC
Sbjct: 62 EQICSKQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAPL 121
Query: 379 KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQ 555
+ C+ ++ C+ + C+ +GRCI R+L CNG+NDCGD SDE +C R C
Sbjct: 122 VAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCT 181
Query: 556 QEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACSPHYILNTR--FRKPYNVENFNP 729
++ + ++ + +G + G VLD+ + G C T +R P N+EN
Sbjct: 182 RKYNPIPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSRTSNPYRVPANLENVGF 241
Query: 730 QTQGKYDFVLTE-YESYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFIS 906
+ Q D + T+ Y+ + N + S + F
Sbjct: 242 EVQTAEDDLKTDFYKDLTSLGHNENQQGSFSSQGGSSFSVPIFYSSKRSENINHNSAFKQ 301
Query: 907 RTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDF 1086
+ S+F+ ++V + K+++L L FL+ + LPLEY+ Y +F DF
Sbjct: 302 AIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLKALNHLPLEYNSALYSRIFDDF 361
Query: 1087 GTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSV 1266
GTHY T LGGVY+ + E ++ + + ++ A+H +I ++ K
Sbjct: 362 GTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEE----AKHCVRIETKKRVLFAKKTKVE 417
Query: 1267 HKCKDILNEIKDRNKRSSM--VNDLVVLVRGGASEHITALAYKDLPTA---DLMQEWGDA 1431
H+C N++ ++++ S + + L+RGG SE+ ALA++ + EW ++
Sbjct: 418 HRC--TTNKLSEKHEGSFIQGAEKSISLIRGGRSEYGAALAWEKGSSGLEEKTFSEWLES 475
Query: 1432 VQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPV 1611
V+ NP +I + P+ +LV + + T + N+++AL+E+ + C CAPC NG P
Sbjct: 476 VKENPAVIDFELAPIVDLV--RNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPT 533
Query: 1612 LKESRCDCICPAGFQGSACE--VTNRKNVPIDGKWNCWSDWSPCSGG-RKTRRRQCNNPP 1782
L + C C+C +G G CE + K+ +DG+W CWS WS C +++R R+CNNP
Sbjct: 534 LSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPA 593
Query: 1783 PQNGGSPCLGPASKTLNC 1836
PQ GG C G + +C
Sbjct: 594 PQRGGKRCEGEKRQEEDC 611
>ref|NP_000056.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 286 bits (733), Expect = 4e-77
Identities = 164/558 (29%), Positives = 274/558 (49%), Gaps = 12/558 (2%)
Frame = +1
Query: 199 ESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSD 378
E + ++TR + PI+C L + W+ CDPC +K+ + S+LRPSQF G+PC
Sbjct: 62 EQICSKQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAPL 121
Query: 379 KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQ 555
+ C+ ++ C+ + C+ +GRCI R+L CNG+NDCGD SDE +C R C
Sbjct: 122 VAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCT 181
Query: 556 QEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACSPHYILNTR--FRKPYNVENFNP 729
++ + ++ + +G + G VLD+ + G C T +R P N+EN
Sbjct: 182 RKYNPIPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSRTSNPYRVPANLENVGF 241
Query: 730 QTQGKYDFVLTE-YESYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFIS 906
+ Q D + T+ Y+ + N + S + F
Sbjct: 242 EVQTAEDDLKTDFYKDLTSLGHNENQQGSFSSQGGSSFSVPIFYSSKRSENINHNSAFKQ 301
Query: 907 RTKRFSHTKSTFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEYRDLFRDF 1086
+ S+F+ ++V + K+++L L FL+ + LPLEY+ Y +F DF
Sbjct: 302 AIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLKALNHLPLEYNSALYSRIFDDF 361
Query: 1087 GTHYITEAVLGGVYEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSV 1266
GTHY T LGGVY+ + E ++ + + ++ A+H +I ++ K
Sbjct: 362 GTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEE----AKHCVRIETKKRVLFAKKTKVE 417
Query: 1267 HKCKDILNEIKDRNKRSSM--VNDLVVLVRGGASEHITALAYKDLPTA---DLMQEWGDA 1431
H+C N++ ++++ S + + L+RGG SE+ ALA++ + EW ++
Sbjct: 418 HRC--TTNKLSEKHEGSFIQGAEKSISLIRGGRSEYGAALAWEKGSSGLEEKTFSEWLES 475
Query: 1432 VQYNPDIIKIKAEPLYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPV 1611
V+ NP +I + P+ +LV + + T + N+++AL+E+ + C CAPC NG P
Sbjct: 476 VKENPAVIDFELAPIVDLV--RNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPT 533
Query: 1612 LKESRCDCICPAGFQGSACE--VTNRKNVPIDGKWNCWSDWSPCSGG-RKTRRRQCNNPP 1782
L + C C+C +G G CE + K+ +DG+W CWS WS C +++R R+CNNP
Sbjct: 534 LSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPA 593
Query: 1783 PQNGGSPCLGPASKTLNC 1836
PQ GG C G + +C
Sbjct: 594 PQRGGKRCEGEKRQEEDC 611
>ref|NP_000578.2| complement component C7 precursor [Homo sapiens].
Length = 843
Score = 249 bits (636), Expect = 7e-66
Identities = 160/544 (29%), Positives = 258/544 (47%), Gaps = 14/544 (2%)
Frame = +1
Query: 247 TPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCHFSDKEVEDCVSNRPCRSQV 426
+P++C+ ++ W+ C+ C K + R S+ Q+ G+PC + E + C R C ++
Sbjct: 24 SPVNCQWDFYAPWSECNGCTKTQTRRRSVAVYGQYGGQPCVGNAFETQSCEPTRGCPTEE 83
Query: 427 RC-EGFVCAQTGRCINRRLLCNGDNDCG-DQSDEANCKRIYKKCQQEMDQYWA-IGSLAS 597
C E F C +G+CI++ L+CNGD+DC D +DE C+ ++ ++D+ I +
Sbjct: 84 GCGERFRCF-SGQCISKSLVCNGDSDCDEDSADEDRCEDSERRPSCDIDKPPPNIELTGN 142
Query: 598 GINLFTNNLEGPVLDHRYYAGACSPHYILNTR--FRKPYNVENFNPQTQGKYDFVLTEYE 771
G N T V++ + + G C + + + +R NV ++ Q + DF Y
Sbjct: 143 GYNELTGQFRNRVINTKSFGGQCRKVFSGDGKDFYRLSGNVLSYTFQVKINNDFNYEFYN 202
Query: 772 SYSDFEQNVTTAAXXXXXXXXXXXXXXMFEFGISSTSDKGKRFISRTKRFSHTKS-TFLH 948
S + ++ +T S+S + + S T KS L
Sbjct: 203 STWSYVKHTSTEHTSSSRKRSF----------FRSSSSSSRSYTSHTNEIHKGKSYQLLV 252
Query: 949 ARSDLEVARYKLKSRN-LMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGV 1125
+ +EVA++ + L L F + + LP Y Y YR L +GTHY+ LGG
Sbjct: 253 VENTVEVAQFINNNPEFLQLAEPFWKELSHLPSLYDYSAYRRLIDQYGTHYLQSGSLGGE 312
Query: 1126 YEYTLIMNKEAMERADYSLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCKDILNEIKDR 1305
Y ++ E +++ D++ + C G+ V S H CK++ N +K
Sbjct: 313 YRVLFYVDSEKLKQNDFNSVEEKKCKSSGWHFVVKF---------SSHGCKELENALKAA 363
Query: 1306 NKRSSMVNDLVVLVRGGASEHITALAYKDL--PTADLMQ--EWGDAVQYNPDIIKIKAEP 1473
+ + V +RGG + I+ L+Y +L P + + W ++V P +IK K P
Sbjct: 364 SGTQNNVLRGEPFIRGGGAGFISGLSYLELDNPAGNKRRYSAWAESVTNLPQVIKQKLTP 423
Query: 1474 LYELVTAADFAYSSTVKQNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAGF 1653
LYELV A S K +K ALEE+ E CHC PCQ G+ ++ + C C C
Sbjct: 424 LYELVKEVPCA--SVKKLYLKWALEEYLDEFDPCHCRPCQNGGLATVEGTHCLCHCKPYT 481
Query: 1654 QGSACE---VTNRKNVPIDGKWNCWSDWSPCSGGRKTRRRQCNNPPPQNGGSPCLGPASK 1824
G+ACE + + +DG W+CWS WSPC G+KTR R+CNNPPP GG C+G ++
Sbjct: 482 FGAACEQGVLVGNQAGGVDGGWSCWSSWSPCVQGKKTRSRECNNPPPSGGGRSCVGETTE 541
Query: 1825 TLNC 1836
+ C
Sbjct: 542 STQC 545
>ref|NP_001728.1| complement component C9 precursor [Homo sapiens].
Length = 559
Score = 233 bits (594), Expect = 5e-61
Identities = 153/534 (28%), Positives = 246/534 (46%), Gaps = 39/534 (7%)
Frame = +1
Query: 202 SLGKSRQTRSVDVTLTP-------IDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGE 360
S+ ++ T S D LT IDC +S WS W+ CDPC ++ +R S+ QF+G+
Sbjct: 17 SILTAQYTTSYDPELTESSGSASHIDCRMSPWSEWSQCDPCLRQMFRSRSIEVFGQFNGK 76
Query: 361 PCHFSDKEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKR 537
C + + CV PC ++ C TGRCI RL CNGDNDCGD SDE +C+
Sbjct: 77 RCTDAVGDRRQCVPTEPCEDAEDDCGNDFQCSTGRCIKMRLRCNGDNDCGDFSDEDDCES 136
Query: 538 IYKK-CQQEMDQYWAIGSLAS-GINLFTNNLEGPVLDHRYYAGACSPHYILNTR--FRKP 705
+ C+ + + + A GIN+ + D+ +Y G C+ NT +R+P
Sbjct: 137 EPRPPCRDRVVEESELARTAGYGINILGMDPLSTPFDNEFYNGLCNRDRDGNTLTYYRRP 196
Query: 706 YNVENFNPQTQGKYDFVLTEYESY--------SDFEQNVTTAAXXXXXXXXXXXXXXMFE 861
+NV + +T+G+ +F YE + N A E
Sbjct: 197 WNVASLIYETKGEKNFRTEHYEEQIEAFKSIIQEKTSNFNAAISLKFTPTETNKAEQCCE 256
Query: 862 FGISSTSDKGKRFISRTKRFSHTKST---------------FLHARSDLEVARYKLKSRN 996
SS S GK RFS++K+ FLH + ++ + R+ +++R+
Sbjct: 257 ETASSISLHGKGSF----RFSYSKNETYQLFLSYSSKKEKMFLHVKGEIHLGRFVMRNRD 312
Query: 997 LMLHYEFLQRVKQLPLEYSYGEYRDLFRDFGTHYITEAVLGGVYEYTLIMNKEAMERADY 1176
++L F+ +K LP Y GEY +GTHY + LGG+YE +++K +M+R
Sbjct: 313 VVLTTTFVDDIKALPTTYEKGEYFAFLETYGTHYSSSGSLGGLYELIYVLDKASMKRKGV 372
Query: 1177 SLKDVHACAQHGFKIGVAIEEVYIKLGVSVHKCKDILNEIKDRNKRSSMVNDLVVLVRGG 1356
LKD+ C + + +A E+ + + C ++++D+V L+RGG
Sbjct: 373 ELKDIKRCLGYHLDVSLAFSEISVGAEFNKDDCVKRGEGRAVNITSENLIDDVVSLIRGG 432
Query: 1357 ASEHITALAYKDLPTADL----MQEWGDAVQYNPDIIKIKAEPLYELVTAADFAYSSTVK 1524
++ L K L + W ++ P +I K P+Y LV + K
Sbjct: 433 TRKYAFELKEKLLRGTVIDVTDFVNWASSINDAPVLISQKLSPIYNLV-PVKMKNAHLKK 491
Query: 1525 QNMKRALEEFEKEISSCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRK 1686
QN++RA+E++ E S C CQ G +L + +C C CP F+G ACE++ +K
Sbjct: 492 QNLERAIEDYINEFSVRKCHTCQNGGTVILMDGKCLCACPFKFEGIACEISKQK 545
>ref|NP_114141.2| hemicentin-1 precursor [Homo sapiens].
Length = 5635
Score = 69.7 bits (169), Expect = 1e-11
Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Frame = +1
Query: 1579 CAPCQGNGVPVLKESR-CDCICPAG----FQGSACEVTNRKN--VPIDGKWNCWSDWSPC 1737
C+ G G+ K SR C+ PA QGS E+ N +N P+DG W+ WS W C
Sbjct: 4541 CSVTCGKGIQ--KRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEEC 4598
Query: 1738 SG----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC*GR----ESF*RVMLLWAAHSES 1893
+ G +TR R CNNP Q+GG PC G A + + C R W SES
Sbjct: 4599 TRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSES 4658
Query: 1894 -SEPLRTPAQLTSTPPPTWGLAHRGG 1968
+ +T A+L + PPP +G ++ G
Sbjct: 4659 CGKGTQTRARLCNNPPPAFGGSYCDG 4684
Score = 64.3 bits (155), Expect = 4e-10
Identities = 42/136 (30%), Positives = 52/136 (38%), Gaps = 27/136 (19%)
Frame = +1
Query: 1510 SSTVKQNMKRALEEFEKEISSCHCAPC--QGNGVPVLKESRCDCICPAGFQ--------- 1656
S V Q R E + + C+ PC GN P C C G
Sbjct: 4728 SDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNP 4787
Query: 1657 -----GSAC-------EVTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQ 1788
G AC + N P+DG W W WS CS GG KTR+R C++P P
Sbjct: 4788 PPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPV 4847
Query: 1789 NGGSPCLGPASKTLNC 1836
GG PC G ++ C
Sbjct: 4848 KGGRPCPGDTTQVTRC 4863
Score = 61.2 bits (147), Expect = 4e-09
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Frame = +1
Query: 1642 PAGFQGSACE-------VTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQ 1788
P F GS C+ V N +N PI GKW W+ WS CS GG + R R C++P PQ
Sbjct: 4674 PPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQ 4733
Query: 1789 NGGSPCLG 1812
GG C G
Sbjct: 4734 YGGRKCEG 4741
Score = 56.6 bits (135), Expect = 9e-08
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +1
Query: 1585 PCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCSG----GRK 1752
PC+GN V ++ + N + P+ G W+ W W CS G +
Sbjct: 4624 PCEGNAVEII-------------------MCNIRPCPVHGAWSAWQPWGTCSESCGKGTQ 4664
Query: 1753 TRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
TR R CNNPPP GGS C G ++ C
Sbjct: 4665 TRARLCNNPPPAFGGSYCDGAETQMQVC 4692
>ref|NP_940857.2| SCO-spondin precursor [Homo sapiens].
Length = 5147
Score = 61.6 bits (148), Expect = 3e-09
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +1
Query: 1639 CPAG-FQGSACEVTNRKNVPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSP 1803
CP F+ +C V + P+ G W W W PCS GG ++R+R C +PPP+NGG+P
Sbjct: 2537 CPRDRFRSQSCFV---QACPVAGAWAMWEAWGPCSVSCGGGHQSRQRSCVDPPPKNGGAP 2593
Query: 1804 CLGPASKTLNC 1836
C G + + C
Sbjct: 2594 CPGASQERAPC 2604
Score = 56.6 bits (135), Expect = 9e-08
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +1
Query: 1678 NRKNVPIDGKWNCWSDWS----PCSGGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
N + P+ G W+ WS WS C GG+ R R C++PP +NGG+PC G + C
Sbjct: 3997 NLRACPVPGGWSRWSPWSWCDRSCGGGQSLRSRSCSSPPSKNGGAPCAGERHQARLC 4053
Score = 56.2 bits (134), Expect = 1e-07
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = +1
Query: 1570 SCHCAPCQGNGVPVLKESRCDCICPAGFQGSACEVTNRKNVPIDGKWNCWSDWSPCSG-- 1743
+C C Q G P E+ AG Q + P+DG W W WSPC
Sbjct: 3434 ACACPTPQHGGAPCTGEAG-----EAGAQHQREACPSYATCPVDGAWGPWGPWSPCDMCL 3488
Query: 1744 GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G+ R R C+ PP GG PC G +++ C
Sbjct: 3489 GQSHRSRACSRPPTPEGGRPCPGNHTQSRPC 3519
Score = 55.1 bits (131), Expect = 3e-07
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Frame = +1
Query: 1573 CHCAPCQ---GNGVPVLKESRCDCIC---------------PAGFQGSACEVTNRKNV-- 1692
C+C P Q NG ++ C C+ P G C + R N
Sbjct: 3344 CYCPPGQVLSSNGAICVQPGHCSCLDLLTGQRHHPGARLARPDGCNHCTC-LEGRLNCTD 3402
Query: 1693 ---PIDGKWNCWSDWS----PCSGGRKTRRRQCNNPPPQNGGSPCLGPASK 1824
P+ G W WS+W+ PC G ++R R C P PQ+GG+PC G A +
Sbjct: 3403 LPCPVPGGWCPWSEWTMCSQPCRGQTRSRSRACACPTPQHGGAPCTGEAGE 3453
Score = 50.1 bits (118), Expect = 8e-06
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Frame = +1
Query: 1693 PIDGKWNCWSDWSPCS---GGRKTRRRQCNNPPPQNGGSPC 1806
P+DG+W+ WS WS CS G TR+RQC++ PQNGG C
Sbjct: 1748 PVDGEWSTWSPWSVCSEPCRGTMTRQRQCHS--PQNGGRTC 1786
>ref|NP_543148.2| netrin receptor UNC5D precursor [Homo sapiens].
Length = 953
Score = 59.7 bits (143), Expect = 1e-08
Identities = 34/82 (41%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 1615 KESRCDCICPAGFQGSA-CE------VTNRKNVPIDGKWNCWSDWSPCSGG-RKTRRRQC 1770
K SR C PA G A CE +T P+DG W WS+WS CS R R+C
Sbjct: 274 KRSRT-CTNPAPLNGGAFCEGMSVQKITCTSLCPVDGSWEVWSEWSVCSPECEHLRIREC 332
Query: 1771 NNPPPQNGGSPCLGPASKTLNC 1836
PPP+NGG C G + ++ NC
Sbjct: 333 TAPPPRNGGKFCEGLSQESENC 354
Score = 51.6 bits (122), Expect = 3e-06
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Frame = +1
Query: 1690 VPIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC*GR---E 1848
V ++G W+ W++WS C+ G + R R C NP P NGG+ C G + + + C +
Sbjct: 249 VYVNGGWSSWTEWSACNVRCGRGWQKRSRTCTNPAPLNGGAFCEGMSVQKITCTSLCPVD 308
Query: 1849 SF*RVMLLWAAHSESSEPLRTPAQLTSTPPPTWGLAHRGGKGC 1977
V W+ S E LR + T+ PP GGK C
Sbjct: 309 GSWEVWSEWSVCSPECEHLRI-RECTAPPP------RNGGKFC 344
>ref|NP_003957.2| semaphorin-5A precursor [Homo sapiens].
Length = 1074
Score = 58.5 bits (140), Expect = 2e-08
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +1
Query: 1696 IDGKWNCWSDWSPCSG----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
++G W+ W+ WS CS G + R+R CNNP P+ GG PCLGP+ + C
Sbjct: 783 VNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPCLGPSLEYQEC 833
Score = 57.4 bits (137), Expect = 5e-08
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +1
Query: 1693 PIDGKWNCWSDWSPCS----GGRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
P+DG W+CWS W+ CS GG R R C+NP P GG CLG ++ C
Sbjct: 839 PVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGLHTEEALC 890
Score = 52.4 bits (124), Expect = 2e-06
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Frame = +1
Query: 1660 SACEVTNRKNVPIDGKWNCWSDWSPCS-------GGRKTRRRQCNNPPPQNGGSPCLGPA 1818
SAC +N+ +DG + WS W+PC+ G R R C++P PQ GG C GP
Sbjct: 530 SACPT---RNLTVDGHFGVWSPWTPCTHTDGSAVGSCLCRTRSCDSPAPQCGGWQCEGPG 586
Query: 1819 SKTLNC 1836
+ NC
Sbjct: 587 MEIANC 592
Score = 51.2 bits (121), Expect = 4e-06
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Frame = +1
Query: 1579 CAPCQGNGVP--VLKESRCDCICP--AGFQ--GSACEVTNRKNVPIDGKWNCWSDWSPCS 1740
C G+ V + + CD P G+Q G E+ N +G W W+ WSPCS
Sbjct: 552 CTHTDGSAVGSCLCRTRSCDSPAPQCGGWQCEGPGMEIANCSR---NGGWTPWTSWSPCS 608
Query: 1741 G----GRKTRRRQCNNPPPQNGGSPCLGPASKTLNC 1836
G + R+R C+NP P++GG C+G + C
Sbjct: 609 TTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYC 644
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 83,600,018
Number of extensions: 2285384
Number of successful extensions: 9516
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 9314
Number of HSP's successfully gapped: 51
Length of query: 704
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 594
Effective length of database: 14,671,124
Effective search space: 8714647656
Effective search space used: 8714647656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008835
(2114 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 480 e-132
>Sscrofa_Chr06
|| Length = 157765593
Score = 480 bits (242), Expect = e-132
Identities = 242/242 (100%)
Strand = Plus / Plus
Query: 930 gaaaagcacatttctgcacgcgcgctctgaccttgaggtagcgcgttacaagctgaaatc 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143187707 gaaaagcacatttctgcacgcgcgctctgaccttgaggtagcgcgttacaagctgaaatc 143187766
Query: 990 cagaaacctcatgctgcattacgagttccttcagagggtcaagcagctgcctctggagta 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143187767 cagaaacctcatgctgcattacgagttccttcagagggtcaagcagctgcctctggagta 143187826
Query: 1050 cagctacggggagtacagagatctcttccgagattttgggacccactacatcacagaggc 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143187827 cagctacggggagtacagagatctcttccgagattttgggacccactacatcacagaggc 143187886
Query: 1110 cgtgctcgggggtgtttatgagtacacactcatcatgaacaaagaggccatggagagagc 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143187887 cgtgctcgggggtgtttatgagtacacactcatcatgaacaaagaggccatggagagagc 143187946
Query: 1170 ag 1171
||
Sbjct: 143187947 ag 143187948
Score = 450 bits (227), Expect = e-123
Identities = 262/271 (96%), Gaps = 2/271 (0%)
Strand = Plus / Plus
Query: 1688 atgtccccattgatgggaagtggaattgctggtcagactggtctccgtgttctggaggac 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143205113 atgtccccattgatgggaagtggaattgctggtcagactggtctccgtgttctggaggac 143205172
Query: 1748 gtaaaacaagacgaaggcagtgcaacaatccacctcctcaaaatgggggcagcccctgct 1807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143205173 gtaaaacaagacgaaggcagtgcaacaatccacctcctcaaaatgggggcagcccctgct 143205232
Query: 1808 tgggtcctgcttcaaaaacacttaactgttaaggaagggagagcttctagcgggtgatgc 1867
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143205233 tgggtcctgcttcagaaacacttaactgttaaggaagggagagcttctagcgggtgatgc 143205292
Query: 1868 tactgtgggctgcccacagtgagagctctgaacccttaagaaccccggcccagctcacct 1927
||||||||||||| ||||||||||||||||| |||||| |||||| || |||||||||||
Sbjct: 143205293 tactgtgggctgcacacagtgagagctctgagcccttaggaacccagg-ccagctcacct 143205351
Query: 1928 ccacaccccctcccacctggggcctggccca 1958
||||||| ||||||||| ||||||||||||
Sbjct: 143205352 ccacaccagctcccacct-gggcctggccca 143205381
Score = 391 bits (197), Expect = e-105
Identities = 200/201 (99%)
Strand = Plus / Plus
Query: 730 cagacccaaggaaaatatgactttgtactgacagaatacgaatcatactcagatttcgaa 789
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 143185760 cagacccaaggaaaatatgactttgcactgacagaatacgaatcatactcagatttcgaa 143185819
Query: 790 caaaatgtcacaactgcagcaattagcaagtctagtttcagcttcggttttaaaatatct 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143185820 caaaatgtcacaactgcagcaattagcaagtctagtttcagcttcggttttaaaatatct 143185879
Query: 850 ggaatgtttgaatttggcatcagtagcacaagtgataaaggcaaacgttttattagcaga 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143185880 ggaatgtttgaatttggcatcagtagcacaagtgataaaggcaaacgttttattagcaga 143185939
Query: 910 accaagcgattctctcacacg 930
|||||||||||||||||||||
Sbjct: 143185940 accaagcgattctctcacacg 143185960
Score = 331 bits (167), Expect = 9e-88
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 1299 agacagaaacaagagaagcagcatggtgaatgacttggtggtccttgtgcggggaggtgc 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143192843 agacagaaacaagagaagcagcatggtgaatgacttggtggtccttgtgcggggaggtgc 143192902
Query: 1359 aagtgaacacatcactgccctggcatataaggatctgccaacagcggacctgatgcagga 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143192903 aagtgaacacatcactgccctggcatataaggatctgccaacagcggacctgatgcagga 143192962
Query: 1419 atggggagatgcagtgcagtacaacccagacatcatcaaaattaagg 1465
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143192963 atggggagatgcagtgcagtacaacccagacatcatcaaaattaagg 143193009
Score = 315 bits (159), Expect = 5e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 157 agaggtgagaggccacactctcttgagtcaaatgcagtcaacgagagccttggcaagagt 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143172384 agaggtgagaggccacactctcttgagtcaaatgcagtcaacgagagccttggcaagagt 143172443
Query: 217 agacagacgcggagtgtggatgtcaccttgacgcctattgattgtgaactgtccagctgg 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143172444 agacagacgcggagtgtggatgtcaccttgacgcctattgattgtgaactgtccagctgg 143172503
Query: 277 tcctcctggaccacgtgtgatccctgtcagaagaaaagg 315
|||||||||||||||||||||||||||||||||||||||
Sbjct: 143172504 tcctcctggaccacgtgtgatccctgtcagaagaaaagg 143172542
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 1 gcattccctgtgcaggttcttcatggatccatgagcctcagtcagatctcctgtcgcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143164870 gcattccctgtgcaggttcttcatggatccatgagcctcagtcagatctcctgtcgcata 143164929
Query: 61 gaaaaaatgaagacctctgggacgtgggcttggaggatgccggcaaagctgtttcttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143164930 gaaaaaatgaagacctctgggacgtgggcttggaggatgccggcaaagctgtttcttctc 143164989
Query: 121 tgtgctgccctggggtgtctcagtttacctggctccag 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 143164990 tgtgctgccctggggtgtctcagtttacctggctccag 143165027
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 1463 aggcagagcctctctatgaactggtgacagccgcggactttgcctattccagcacagtga 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143200218 aggcagagcctctctatgaactggtgacagccgcggactttgcctattccagcacagtga 143200277
Query: 1523 agcagaacatgaagcgagccctggaggagttcgagaaggaaatcagctcctgccactgtg 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143200278 agcagaacatgaagcgagccctggaggagttcgagaaggaaatcagctcctgccactgtg 143200337
Query: 1583 ctccctgccaggggaatggagtccctgtcctgaaag 1618
||||||||||||||||||||||||||||||||||||
Sbjct: 143200338 ctccctgccaggggaatggagtccctgtcctgaaag 143200373
Score = 281 bits (142), Expect = 8e-73
Identities = 145/146 (99%)
Strand = Plus / Plus
Query: 455 cagggaggtgcatcaaccgtagacttctttgcaatggtgacaatgactgtggagatcagt 514
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143178865 cagggagatgcatcaaccgtagacttctttgcaatggtgacaatgactgtggagatcagt 143178924
Query: 515 cggatgaggcaaactgtaaaaggatttataaaaagtgtcagcaggaaatggaccagtact 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143178925 cggatgaggcaaactgtaaaaggatttataaaaagtgtcagcaggaaatggaccagtact 143178984
Query: 575 gggccattggcagcctggccagtggg 600
||||||||||||||||||||||||||
Sbjct: 143178985 gggccattggcagcctggccagtggg 143179010
Score = 270 bits (136), Expect = 3e-69
Identities = 142/144 (98%)
Strand = Plus / Plus
Query: 315 gtacagacatgcctccttgctccggccctctcagttccatggggaaccgtgccacttctc 374
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 143176645 gtacagacatgcctccttgctccggccctctcagttccatggggaaccgtgcaacttctc 143176704
Query: 375 tgacaaggaagttgaagactgtgtttccaacagaccatgccgaagtcaagtgcgatgtga 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143176705 tgacaaggaagttgaagactgtgtttccaacagaccatgccgaagtcaagtgcgatgtga 143176764
Query: 435 aggctttgtctgtgcgcagacagg 458
||||||||| ||||||||||||||
Sbjct: 143176765 aggctttgtgtgtgcgcagacagg 143176788
Score = 266 bits (134), Expect = 5e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 599 ggataaatttgttcacgaacaacttggagggcccagttctcgatcacaggtattacgccg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143182050 ggataaatttgttcacgaacaacttggagggcccagttctcgatcacaggtattacgccg 143182109
Query: 659 gtgcatgctccccccattacatactcaacacgaggtttcggaaaccatacaatgtggaaa 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143182110 gtgcatgctccccccattacatactcaacacgaggtttcggaaaccatacaatgtggaaa 143182169
Query: 719 acttcaacccacag 732
||||||||||||||
Sbjct: 143182170 acttcaacccacag 143182183
Score = 262 bits (132), Expect = 7e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 1169 cagattattctctaaaggatgtccatgcctgtgcccaacatggttttaaaattggtgtcg 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143190216 cagattattctctaaaggatgtccatgcctgtgcccaacatggttttaaaattggtgtcg 143190275
Query: 1229 ccatagaagaggtctacatcaagttgggggtgtcggtgcacaagtgcaaggacattctca 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143190276 ccatagaagaggtctacatcaagttgggggtgtcggtgcacaagtgcaaggacattctca 143190335
Query: 1289 atgagataaaag 1300
||||||||||||
Sbjct: 143190336 atgagataaaag 143190347
Score = 141 bits (71), Expect = 2e-30
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1617 agaatcacgctgtgactgcatctgtcctgctggattccaaggctcagcctgtgaggtcac 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143202778 agaatcacgctgtgactgcatctgtcctgctggattccaaggctcagcctgtgaggtcac 143202837
Query: 1677 caatcggaaaa 1687
|||||||||||
Sbjct: 143202838 caatcggaaaa 143202848
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 63,148,274
Number of extensions: 470
Number of successful extensions: 470
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 12
Length of query: 2114
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2092
Effective length of database: 2,808,408,574
Effective search space: 5875190736808
Effective search space used: 5875190736808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)