Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008837
(1053 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014870.1| transmembrane protein 106A [Bos taurus]. 99 5e-21
>ref|NP_001014870.1| transmembrane protein 106A [Bos taurus].
Length = 261
Score = 99.4 bits (246), Expect = 5e-21
Identities = 47/69 (68%), Positives = 49/69 (71%)
Frame = +2
Query: 200 MGETFSQLGSQKDENKSILPPDPTIGRKXXXXXXXXXXKVFCSCVPCERATGASFVICPT 379
MGETFSQL SQKDENK ILPP+P G K + F SCVPCERA GA FV CPT
Sbjct: 1 MGETFSQLASQKDENKLILPPNPAFGSKAASYSSMGNSRPFFSCVPCERAAGAGFVTCPT 60
Query: 380 CQGSGEIPR 406
CQGSGEIPR
Sbjct: 61 CQGSGEIPR 69
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,485,406
Number of extensions: 1167885
Number of successful extensions: 3954
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3951
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,273,310
Effective search space: 3539780880
Effective search space used: 3539780880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008837
(1053 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548074.1| PREDICTED: hypothetical protein XP_548074 [Cani... 82 9e-16
>ref|XP_548074.1| PREDICTED: hypothetical protein XP_548074 [Canis familiaris].
Length = 261
Score = 82.0 bits (201), Expect = 9e-16
Identities = 42/69 (60%), Positives = 45/69 (65%)
Frame = +2
Query: 200 MGETFSQLGSQKDENKSILPPDPTIGRKXXXXXXXXXXKVFCSCVPCERATGASFVICPT 379
MGETFS LGS ++ENKSILP P G K K FC VPCE A ASFV CPT
Sbjct: 1 MGETFSHLGS-REENKSILPRSPATGSKAACYSSTRSSKSFCFPVPCEGAASASFVTCPT 59
Query: 380 CQGSGEIPR 406
CQGSGEIP+
Sbjct: 60 CQGSGEIPQ 68
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,187,333
Number of extensions: 1193922
Number of successful extensions: 4103
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4089
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 247
Effective length of database: 15,407,560
Effective search space: 3805667320
Effective search space used: 3805667320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008837
(1053 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358075.1| PREDICTED: transmembrane protein 106A-like i... 124 7e-29
Alignment gi|XP_003358074.1| PREDICTED: transmembrane protein 106A-like i... 124 7e-29
>ref|XP_003358075.1| PREDICTED: transmembrane protein 106A-like isoform 2 [Sus scrofa].
Length = 261
Score = 124 bits (312), Expect = 7e-29
Identities = 59/69 (85%), Positives = 59/69 (85%)
Frame = +2
Query: 200 MGETFSQLGSQKDENKSILPPDPTIGRKXXXXXXXXXXKVFCSCVPCERATGASFVICPT 379
MGETFSQLGSQKDENKSILPPDPTIGRK KVFCSCVPCERATGASFVICPT
Sbjct: 1 MGETFSQLGSQKDENKSILPPDPTIGRKSASYSSTNSSKVFCSCVPCERATGASFVICPT 60
Query: 380 CQGSGEIPR 406
CQGSGEIPR
Sbjct: 61 CQGSGEIPR 69
>ref|XP_003358074.1| PREDICTED: transmembrane protein 106A-like isoform 1 [Sus scrofa].
Length = 261
Score = 124 bits (312), Expect = 7e-29
Identities = 59/69 (85%), Positives = 59/69 (85%)
Frame = +2
Query: 200 MGETFSQLGSQKDENKSILPPDPTIGRKXXXXXXXXXXKVFCSCVPCERATGASFVICPT 379
MGETFSQLGSQKDENKSILPPDPTIGRK KVFCSCVPCERATGASFVICPT
Sbjct: 1 MGETFSQLGSQKDENKSILPPDPTIGRKSASYSSTNSSKVFCSCVPCERATGASFVICPT 60
Query: 380 CQGSGEIPR 406
CQGSGEIPR
Sbjct: 61 CQGSGEIPR 69
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,808,240
Number of extensions: 754033
Number of successful extensions: 2711
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2708
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,854,232
Effective search space: 2222412232
Effective search space used: 2222412232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008837
(1053 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659079.1| transmembrane protein 106A [Mus musculus]. 69 5e-12
>ref|NP_659079.1| transmembrane protein 106A [Mus musculus].
Length = 261
Score = 69.3 bits (168), Expect = 5e-12
Identities = 33/69 (47%), Positives = 44/69 (63%)
Frame = +2
Query: 200 MGETFSQLGSQKDENKSILPPDPTIGRKXXXXXXXXXXKVFCSCVPCERATGASFVICPT 379
MG+ SQL S+KDE+K ILP +P + + K SC+P E+A +SFV CPT
Sbjct: 1 MGKAVSQLTSRKDEDKPILPDNPAMASQAANYFSTGSSKPAHSCMPYEKAASSSFVTCPT 60
Query: 380 CQGSGEIPR 406
CQG+GEIP+
Sbjct: 61 CQGNGEIPQ 69
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,706,160
Number of extensions: 973386
Number of successful extensions: 3082
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3078
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 249
Effective length of database: 12,553,887
Effective search space: 3125917863
Effective search space used: 3125917863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008837
(1053 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659478.1| transmembrane protein 106A [Homo sapiens]. 86 4e-17
>ref|NP_659478.1| transmembrane protein 106A [Homo sapiens].
Length = 262
Score = 86.3 bits (212), Expect = 4e-17
Identities = 43/70 (61%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +2
Query: 200 MGETFSQLGS-QKDENKSILPPDPTIGRKXXXXXXXXXXKVFCSCVPCERATGASFVICP 376
MG+TFSQLGS ++DENKSIL P IG K K FCSCVPCE ASFV CP
Sbjct: 1 MGKTFSQLGSWREDENKSILSSKPAIGSKAVNYSSTGSSKSFCSCVPCEGTADASFVTCP 60
Query: 377 TCQGSGEIPR 406
TCQGSG+IP+
Sbjct: 61 TCQGSGKIPQ 70
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,360,219
Number of extensions: 1176294
Number of successful extensions: 3977
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3963
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,901,872
Effective search space: 3695664256
Effective search space used: 3695664256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008837
(1053 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1699 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1699 bits (857), Expect = 0.0
Identities = 873/877 (99%), Gaps = 1/877 (0%)
Strand = Plus / Plus
Query: 178 cagtgaggaatccctctgaacaatgggcgagacattctcccagctgggctctcagaagga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20128445 cagtgaggaatccctctgaacaatgggcgagacattctcccagctgggctctcagaagga 20128504
Query: 238 tgagaacaagtccatcttgccccctgacccaaccatcggcaggaagtcggccagctactc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20128505 tgagaacaagtccatcttgccccctgacccaaccatcggcaggaagtcggccagctactc 20128564
Query: 298 cagcaccaacagcagcaaggttttttgttcctgtgtgccttgtgaaagggccactggtgc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20128565 cagcaccaacagcagcaaggttttttgttcctgtgtgccttgtgaaagggccactggtgc 20128624
Query: 358 cagctttgttatttgtcccacatgccagggcagtggggagatccctcgaggtgagtggcc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20128625 cagctttgttatttgtcccacatgccagggcagtggggagatccctcgaggtgagtggcc 20128684
Query: 418 caaagctctgaaagtagcctgggatccaggaaaagcgcttcgcagccagctgactagagc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20128685 caaagctctgaaagtagcctgggatccaggaaaagcgcttcgcagccagctgactagagc 20128744
Query: 478 caggctcctctgagtctcctttaatagggttgggtctcttggcttctagtcccccagttt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20128745 caggctcctctgagtctcctttaatagggttgggtctcttggcttctagtcccccagttt 20128804
Query: 538 caggctagccaggaagttgccaacccttcctggacttgctgagggcccccgccccaacct 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20128805 caggctagccaggaagttgccaacccttcctggacttgctgagggcccccgccccaacct 20128864
Query: 598 tggcccaatcccagtcagtttccagcctctctggtcctttagcaacactgccttaggatt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20128865 tggcccaatcccagtcagtttccagcctctctggtcctttagcaacactgccttaggatt 20128924
Query: 658 caggaagttacaaatgatctcgccaaagaaacagggcttctttgatttgtagtgacttgc 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20128925 caggaagttacaaatgatctcgccaaagaaacagggcttctttgatttgtagtgacttgc 20128984
Query: 718 agaaattcttcccacctgttaatgaaaatctcacctccattctagaggtagcaaagctga 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20128985 agaaattcttcccacctgttaatgaaaatctcacctccattctagaggtagcaaagctga 20129044
Query: 778 gctgccagcagaccagtgcccccagtcctgccctgaggcagaggcgacatgcttctcacc 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20129045 gctgccagcagaccagtgcccccagtcctgccctgaggcagaggcgacatgcttctcacc 20129104
Query: 838 ctgctctctggggtggagggttgcttctggtaggctggcacaagaaacatttgtcatgaa 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20129105 ctgctctctggggtggagggttgcttctggtaggctggcacaagaaacatttgtcatgaa 20129164
Query: 898 aacttcatggcccttcctctcaccctctttctctctacagagctagagaagcagctggtg 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20129165 aacttcatggcccttcctctcaccctctttctctctacagagctagagaagcagctggtg 20129224
Query: 958 gccctcatcccctatggggaccagaagctgaagcccaggcacacgtaagcccctccttct 1017
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 20129225 gccctcatcccctatggggaccagaggctgaagcccaggcacacgtaagcccctccttct 20129284
Query: 1018 g-cccagctccgcacacatttgccctgggggctactc 1053
| |||||||||||||||||| |||||||||||||||
Sbjct: 20129285 gccccagctccgcacacattgcccctgggggctactc 20129321
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 50 ggactctgctggaaggaggccagtggcccctggagccaccctatcctacaggccctcctc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20126965 ggactctgctggaaggaggccagtggcccctggagccaccctatcctacaggccctcctc 20127024
Query: 110 cccaaagaggcactgcagaagtctcactctcttgcagctgagatgagccggggatctctg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20127025 cccaaagaggcactgcagaagtctcactctcttgcagctgagatgagccggggatctctg 20127084
Query: 170 acctaaaccag 180
|||||||||||
Sbjct: 20127085 acctaaaccag 20127095
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 2 actttcgattccactttgcagccgtttgtgtcactgccgtcgcacggggg 51
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20126621 actttcgattccactttgcagccgtttgtgtcactgccgtcgcacggggg 20126670
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,359,361
Number of extensions: 290
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 3
Length of query: 1053
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1032
Effective length of database: 2,808,413,156
Effective search space: 2898282376992
Effective search space used: 2898282376992
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)