Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008852
(1499 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230227.1| kynurenine 3-monooxygenase (kynurenine 3-hyd... 748 0.0
>ref|NP_001230227.1| kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) [Bos taurus].
Length = 471
Score = 748 bits (1932), Expect = 0.0
Identities = 358/403 (88%), Positives = 383/403 (95%)
Frame = +2
Query: 290 MDSSDIQRTSIAVIGGGLVGSLNACFLAKRNFQVDVYESREDIRMAEFARGRSINLALSY 469
MDSSDIQR +IA+IGGGLVGSLNACFLAKRNFQVD+YE+REDIR+ + ARGRSINLALSY
Sbjct: 1 MDSSDIQRKNIAIIGGGLVGSLNACFLAKRNFQVDIYEAREDIRVTKSARGRSINLALSY 60
Query: 470 RGRQALKAIGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLT 649
RGRQALKAIGLEDQ+VSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLT
Sbjct: 61 RGRQALKAIGLEDQVVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLT 120
Query: 650 AVEKYPNAKVHFGHQLLKCRPETGVITLLGPDKVPKDIACDLILGCDGAYSTVRTHLVKK 829
AVEKY NAKVHFGH+L+KC PE GVIT+LG DKVPKD+ CDLI+GCDGA+STVRT+L+KK
Sbjct: 121 AVEKYSNAKVHFGHRLVKCNPEKGVITVLGQDKVPKDVTCDLIVGCDGAFSTVRTYLMKK 180
Query: 830 PRFDYSQQYIPHGYMELTIPPQNGDFAMEPNYLHIWPRDTFMMIALPNMNKSFTCTLFMP 1009
PRFDYSQQYIPHGYMEL IPP+NGD+AMEPNYLHIWPRDTFMMIALPNMNKSFTCTLFMP
Sbjct: 181 PRFDYSQQYIPHGYMELNIPPKNGDYAMEPNYLHIWPRDTFMMIALPNMNKSFTCTLFMP 240
Query: 1010 FEEFEKLLTSRDVLDFFQKYFPDSLHLIGKEALAQDFFRLPAQPMISVKCSSFHFNSHCV 1189
FEEFEKLLTS DVLDFFQKYFPDS+ LIGK+AL QDFF LPAQ MISVKCSSFHF SHC+
Sbjct: 241 FEEFEKLLTSSDVLDFFQKYFPDSIPLIGKQALVQDFFLLPAQSMISVKCSSFHFKSHCL 300
Query: 1190 LMGDAAHALVPFFGQGMNAGFEDCLVFDELMDKFNNDFSMCLPEFSKFRIPDDHAISDLS 1369
LMGDAAHA+VPFFGQGMNAGFEDCLVFDELMDKFNNDFSMCLPEFS+ RIPDDHAISDLS
Sbjct: 301 LMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKFNNDFSMCLPEFSRLRIPDDHAISDLS 360
Query: 1370 MYNYIEMRSHVNSRWFIFQKNIERCLHTLMPSTLIPLYTMGTF 1498
MYNYIEMR+HVNSRWFIF+KNIER LH +MPST IPLYTM TF
Sbjct: 361 MYNYIEMRAHVNSRWFIFRKNIERLLHAIMPSTFIPLYTMVTF 403
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,346,770
Number of extensions: 1393055
Number of successful extensions: 3483
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3482
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 393
Effective length of database: 14,174,046
Effective search space: 5570400078
Effective search space used: 5570400078
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008852
(1499 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001182441.1| kynurenine 3-monooxygenase [Canis lupus fami... 736 0.0
>ref|NP_001182441.1| kynurenine 3-monooxygenase [Canis lupus familiaris].
Length = 477
Score = 736 bits (1899), Expect = 0.0
Identities = 353/403 (87%), Positives = 383/403 (95%)
Frame = +2
Query: 290 MDSSDIQRTSIAVIGGGLVGSLNACFLAKRNFQVDVYESREDIRMAEFARGRSINLALSY 469
M+SSD+QR IAVIGGGLVGSLNACFLAK+NFQVDVYE+REDIR+A+FARGRSINLALSY
Sbjct: 1 MESSDVQRKKIAVIGGGLVGSLNACFLAKKNFQVDVYEAREDIRVAKFARGRSINLALSY 60
Query: 470 RGRQALKAIGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLT 649
RGRQAL AIGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLT
Sbjct: 61 RGRQALNAIGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLT 120
Query: 650 AVEKYPNAKVHFGHQLLKCRPETGVITLLGPDKVPKDIACDLILGCDGAYSTVRTHLVKK 829
AVEKYPN KVHFGH+LLKC PE GVIT++G D+VP DI DLI+GCDGAYSTVRT+L+KK
Sbjct: 121 AVEKYPNVKVHFGHRLLKCNPEEGVITVVGSDEVPVDITYDLIVGCDGAYSTVRTYLMKK 180
Query: 830 PRFDYSQQYIPHGYMELTIPPQNGDFAMEPNYLHIWPRDTFMMIALPNMNKSFTCTLFMP 1009
PRFDYSQQYIPHGYMELTIPP+NGD+AMEPNYLHIWPR+TFMMIALPNMNKSFTCTLFMP
Sbjct: 181 PRFDYSQQYIPHGYMELTIPPKNGDYAMEPNYLHIWPRNTFMMIALPNMNKSFTCTLFMP 240
Query: 1010 FEEFEKLLTSRDVLDFFQKYFPDSLHLIGKEALAQDFFRLPAQPMISVKCSSFHFNSHCV 1189
FE+FEKLLTS DVL+FF+KYFPDS+ LIG++ALA+DFF LPAQ MISVKCSSFHF SHCV
Sbjct: 241 FEDFEKLLTSSDVLNFFKKYFPDSIPLIGEQALARDFFLLPAQSMISVKCSSFHFKSHCV 300
Query: 1190 LMGDAAHALVPFFGQGMNAGFEDCLVFDELMDKFNNDFSMCLPEFSKFRIPDDHAISDLS 1369
LMGDAAHA+VPFFGQGMNAGFEDCLVFDELMDKFNNDFSMCLPE+S+ RIPDDHAISDLS
Sbjct: 301 LMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKFNNDFSMCLPEYSRLRIPDDHAISDLS 360
Query: 1370 MYNYIEMRSHVNSRWFIFQKNIERCLHTLMPSTLIPLYTMGTF 1498
MYNYIEMR+HVNSRWFIFQKN+E+ LH +MPST IPLYTM TF
Sbjct: 361 MYNYIEMRAHVNSRWFIFQKNMEQFLHAIMPSTFIPLYTMITF 403
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,818,245
Number of extensions: 1439298
Number of successful extensions: 3395
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3394
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 392
Effective length of database: 15,307,552
Effective search space: 6000560384
Effective search space used: 6000560384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008852
(1499 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999241.1| kynurenine 3-monooxygenase [Sus scrofa]. 834 0.0
>ref|NP_999241.1| kynurenine 3-monooxygenase [Sus scrofa].
Length = 478
Score = 834 bits (2154), Expect = 0.0
Identities = 408/410 (99%), Positives = 408/410 (99%)
Frame = +2
Query: 269 MKNTSAVMDSSDIQRTSIAVIGGGLVGSLNACFLAKRNFQVDVYESREDIRMAEFARGRS 448
MKNTSAVMDSSDIQRTSIAVIGGGLVGSLNACFLAKRNFQVDVYESREDIRMAEFARGRS
Sbjct: 1 MKNTSAVMDSSDIQRTSIAVIGGGLVGSLNACFLAKRNFQVDVYESREDIRMAEFARGRS 60
Query: 449 INLALSYRGRQALKAIGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISREN 628
INLALSYRGRQALKAIGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISREN
Sbjct: 61 INLALSYRGRQALKAIGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISREN 120
Query: 629 LNKDLLTAVEKYPNAKVHFGHQLLKCRPETGVITLLGPDKVPKDIACDLILGCDGAYSTV 808
LNKDLLTAVEKYPNAKVHFGHQLLKCRPETGVITLLGPDKVPKDIACDLILGCDGAYSTV
Sbjct: 121 LNKDLLTAVEKYPNAKVHFGHQLLKCRPETGVITLLGPDKVPKDIACDLILGCDGAYSTV 180
Query: 809 RTHLVKKPRFDYSQQYIPHGYMELTIPPQNGDFAMEPNYLHIWPRDTFMMIALPNMNKSF 988
RTHLVKKPRFDYSQQYIPHGYMELTIPPQNGDFAMEPNYLHIWPRDTFMMIALPNMNKSF
Sbjct: 181 RTHLVKKPRFDYSQQYIPHGYMELTIPPQNGDFAMEPNYLHIWPRDTFMMIALPNMNKSF 240
Query: 989 TCTLFMPFEEFEKLLTSRDVLDFFQKYFPDSLHLIGKEALAQDFFRLPAQPMISVKCSSF 1168
TCTLFMPFEEFEKLLTSRDVLDFFQKYFPDSLHLIGKEALAQDFFRLPAQPMISVKCSSF
Sbjct: 241 TCTLFMPFEEFEKLLTSRDVLDFFQKYFPDSLHLIGKEALAQDFFRLPAQPMISVKCSSF 300
Query: 1169 HFNSHCVLMGDAAHALVPFFGQGMNAGFEDCLVFDELMDKFNNDFSMCLPEFSKFRIPDD 1348
HFNSHCVLMGDAAHALVPFFGQGMNAGFEDCLVFDELMDKFNNDFSMCLPEFSKFRIPDD
Sbjct: 301 HFNSHCVLMGDAAHALVPFFGQGMNAGFEDCLVFDELMDKFNNDFSMCLPEFSKFRIPDD 360
Query: 1349 HAISDLSMYNYIEMRSHVNSRWFIFQKNIERCLHTLMPSTLIPLYTMGTF 1498
HAISDLSMYNYIEMRSHVNSRWFIFQKNIERCLHTLMPST IPLYTM TF
Sbjct: 361 HAISDLSMYNYIEMRSHVNSRWFIFQKNIERCLHTLMPSTFIPLYTMVTF 410
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,531,056
Number of extensions: 887316
Number of successful extensions: 2103
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2102
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 396
Effective length of database: 8,779,541
Effective search space: 3476698236
Effective search space used: 3476698236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008852
(1499 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598570.1| kynurenine 3-monooxygenase [Mus musculus]. 698 0.0
>ref|NP_598570.1| kynurenine 3-monooxygenase [Mus musculus].
Length = 479
Score = 698 bits (1802), Expect = 0.0
Identities = 331/403 (82%), Positives = 370/403 (91%)
Frame = +2
Query: 290 MDSSDIQRTSIAVIGGGLVGSLNACFLAKRNFQVDVYESREDIRMAEFARGRSINLALSY 469
M SSD Q +AVIGGGLVG+LNACFLAKRNFQVDVYE+REDIR+A+ ARGRSINLALSY
Sbjct: 1 MASSDTQGKRVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAKSARGRSINLALSY 60
Query: 470 RGRQALKAIGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLT 649
RGRQALKAIGLEDQIVS+G+PM+ARMIHSLSGKKSAIPYG KSQYILSISRENLNKDLLT
Sbjct: 61 RGRQALKAIGLEDQIVSKGVPMKARMIHSLSGKKSAIPYGNKSQYILSISRENLNKDLLT 120
Query: 650 AVEKYPNAKVHFGHQLLKCRPETGVITLLGPDKVPKDIACDLILGCDGAYSTVRTHLVKK 829
AVE Y NAKVHFGH+L KC PE GV+T+LGPDKVP+D+ CDL++GCDGAYSTVR HL+KK
Sbjct: 121 AVESYANAKVHFGHKLSKCIPEEGVLTVLGPDKVPRDVTCDLVVGCDGAYSTVRAHLMKK 180
Query: 830 PRFDYSQQYIPHGYMELTIPPQNGDFAMEPNYLHIWPRDTFMMIALPNMNKSFTCTLFMP 1009
PRFDY+QQYIPHGYMELTIPP+NG++AMEPN LHIWPR+ +MMIALPNM+KSFTCTLFMP
Sbjct: 181 PRFDYTQQYIPHGYMELTIPPKNGEYAMEPNCLHIWPRNAYMMIALPNMDKSFTCTLFMP 240
Query: 1010 FEEFEKLLTSRDVLDFFQKYFPDSLHLIGKEALAQDFFRLPAQPMISVKCSSFHFNSHCV 1189
FEEFE+L T DVLDFFQK FPD++ L+G++AL +DFF LPAQPMISVKCS FH SHCV
Sbjct: 241 FEEFERLPTRSDVLDFFQKNFPDAIPLMGEQALMRDFFLLPAQPMISVKCSPFHLKSHCV 300
Query: 1190 LMGDAAHALVPFFGQGMNAGFEDCLVFDELMDKFNNDFSMCLPEFSKFRIPDDHAISDLS 1369
LMGDAAHA+VPFFGQGMNAGFEDCLVFDELMDKFNN+ SMCLPEFS+FRIPDDHAISDLS
Sbjct: 301 LMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKFNNNLSMCLPEFSRFRIPDDHAISDLS 360
Query: 1370 MYNYIEMRSHVNSRWFIFQKNIERCLHTLMPSTLIPLYTMGTF 1498
MYNYIEMR+HVNSRWF+FQK +++ LH +MPST IPLYTM F
Sbjct: 361 MYNYIEMRAHVNSRWFLFQKLLDKFLHAIMPSTFIPLYTMVAF 403
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,800,657
Number of extensions: 1232572
Number of successful extensions: 3042
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3042
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 393
Effective length of database: 12,433,743
Effective search space: 4886460999
Effective search space used: 4886460999
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008852
(1499 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003670.2| kynurenine 3-monooxygenase [Homo sapiens]. 726 0.0
>ref|NP_003670.2| kynurenine 3-monooxygenase [Homo sapiens].
Length = 486
Score = 726 bits (1874), Expect = 0.0
Identities = 344/403 (85%), Positives = 375/403 (93%)
Frame = +2
Query: 290 MDSSDIQRTSIAVIGGGLVGSLNACFLAKRNFQVDVYESREDIRMAEFARGRSINLALSY 469
MDSS IQR +AVIGGGLVGSL ACFLAKRNFQ+DVYE+RED R+A F RGRSINLALS+
Sbjct: 1 MDSSVIQRKKVAVIGGGLVGSLQACFLAKRNFQIDVYEAREDTRVATFTRGRSINLALSH 60
Query: 470 RGRQALKAIGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSISRENLNKDLLT 649
RGRQALKA+GLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILS+SRENLNKDLLT
Sbjct: 61 RGRQALKAVGLEDQIVSQGIPMRARMIHSLSGKKSAIPYGTKSQYILSVSRENLNKDLLT 120
Query: 650 AVEKYPNAKVHFGHQLLKCRPETGVITLLGPDKVPKDIACDLILGCDGAYSTVRTHLVKK 829
A EKYPN K+HF H+LLKC PE G+IT+LG DKVPKD+ CDLI+GCDGAYSTVR+HL+KK
Sbjct: 121 AAEKYPNVKMHFNHRLLKCNPEEGMITVLGSDKVPKDVTCDLIVGCDGAYSTVRSHLMKK 180
Query: 830 PRFDYSQQYIPHGYMELTIPPQNGDFAMEPNYLHIWPRDTFMMIALPNMNKSFTCTLFMP 1009
PRFDYSQQYIPHGYMELTIPP+NGD+AMEPNYLHIWPR+TFMMIALPNMNKSFTCTLFMP
Sbjct: 181 PRFDYSQQYIPHGYMELTIPPKNGDYAMEPNYLHIWPRNTFMMIALPNMNKSFTCTLFMP 240
Query: 1010 FEEFEKLLTSRDVLDFFQKYFPDSLHLIGKEALAQDFFRLPAQPMISVKCSSFHFNSHCV 1189
FEEFEKLLTS DV+DFFQKYFPD++ LIG++ L QDFF LPAQPMISVKCSSFHF SHCV
Sbjct: 241 FEEFEKLLTSNDVVDFFQKYFPDAIPLIGEKLLVQDFFLLPAQPMISVKCSSFHFKSHCV 300
Query: 1190 LMGDAAHALVPFFGQGMNAGFEDCLVFDELMDKFNNDFSMCLPEFSKFRIPDDHAISDLS 1369
L+GDAAHA+VPFFGQGMNAGFEDCLVFDELMDKF+ND S+CLP FS+ RIPDDHAISDLS
Sbjct: 301 LLGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKFSNDLSLCLPVFSRLRIPDDHAISDLS 360
Query: 1370 MYNYIEMRSHVNSRWFIFQKNIERCLHTLMPSTLIPLYTMGTF 1498
MYNYIEMR+HVNS WFIFQKN+ER LH +MPST IPLYTM TF
Sbjct: 361 MYNYIEMRAHVNSSWFIFQKNMERFLHAIMPSTFIPLYTMVTF 403
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,007,090
Number of extensions: 1435349
Number of successful extensions: 3474
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3473
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 392
Effective length of database: 14,770,016
Effective search space: 5789846272
Effective search space used: 5789846272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008852
(1499 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 636 e-180
>Sscrofa_Chr10
|| Length = 79102373
Score = 636 bits (321), Expect = e-180
Identities = 337/345 (97%)
Strand = Plus / Plus
Query: 1 taaaactgtactttagaaactcctgtcttacacataagacagtgagtgtctttacttggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14889829 taaaactgtactttagaaactcctgtcttacacataagacagtgagtgtctttacttggc 14889888
Query: 61 tggatttttcaagatttggtcattgcagtgaatgcccnnnnnnnnctctaaagctgagct 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 14889889 tggatttttcaagatttggtcattgcagtgaatgcccttttttttctctaaagctgagct 14889948
Query: 121 aactgtcctttgggctactcacgggttaaattaaattagccctgctcaaacactgctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14889949 aactgtcctttgggctactcacgggttaaattaaattagccctgctcaaacactgctgct 14890008
Query: 181 ggctcacaagcgcagggctttgggcagattaaagacctgggaaatcagtgtgcaggaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14890009 ggctcacaagcgcagggctttgggcagattaaagacctgggaaatcagtgtgcaggaggc 14890068
Query: 241 agtcttcttggcaagtgctgcaacaattatgaaaaacacctcggcggtgatggattcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14890069 agtcttcttggcaagtgctgcaacaattatgaaaaacacctcggcggtgatggattcatc 14890128
Query: 301 tgacattcagaggacaagcatagctgtcattggtggtggcttggt 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14890129 tgacattcagaggacaagcatagctgtcattggtggtggcttggt 14890173
Score = 323 bits (163), Expect = 2e-85
Identities = 166/167 (99%)
Strand = Plus / Plus
Query: 738 gacctgacaaagttcccaaagatatcgcctgtgacctcatcttgggatgtgatggtgcct 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14918793 gacctgacaaagttcccaaagatatcgcctgtgacctcatcttgggatgtgatggtgcct 14918852
Query: 798 attcgactgtcagaactcatctcgtgaaaaagcctcgctttgattacagtcagcagtaca 857
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 14918853 attcgactgtcagaactcatctcgtgaagaagcctcgctttgattacagtcagcagtaca 14918912
Query: 858 ttcctcacggctacatggagttgactatcccacctcagaacggcgac 904
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14918913 ttcctcacggctacatggagttgactatcccacctcagaacggcgac 14918959
Score = 295 bits (149), Expect = 4e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1099 agaagccctggcccaagacttctttcggttgcccgcccagcccatgatctccgttaagtg 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14926387 agaagccctggcccaagacttctttcggttgcccgcccagcccatgatctccgttaagtg 14926446
Query: 1159 ctcttcttttcacttcaattcacactgtgtgctgatgggagatgccgcccatgccctcgt 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14926447 ctcttcttttcacttcaattcacactgtgtgctgatgggagatgccgcccatgccctcgt 14926506
Query: 1219 gcccttttttggacaaggaatgaatgcgg 1247
|||||||||||||||||||||||||||||
Sbjct: 14926507 gcccttttttggacaaggaatgaatgcgg 14926535
Score = 236 bits (119), Expect = 3e-59
Identities = 122/123 (99%)
Strand = Plus / Plus
Query: 976 gaacaaatctttcacgtgtactttgttcatgccctttgaagagtttgaaaaactgctcac 1035
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 14924518 gaacaaatctttcacgtgtactttgttcatgccctttgaagagtttgaaaaattgctcac 14924577
Query: 1036 gagtcgtgatgtgctggatttcttccagaagtactttccggattctcttcatctaattgg 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14924578 gagtcgtgatgtgctggatttcttccagaagtactttccggattctcttcatctaattgg 14924637
Query: 1096 aaa 1098
|||
Sbjct: 14924638 aaa 14924640
Score = 200 bits (101), Expect = 2e-48
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1386 agatgcgatcacatgtcaactcaaggtggttcatcttccaaaagaacatagagaggtgtc 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14935243 agatgcgatcacatgtcaactcaaggtggttcatcttccaaaagaacatagagaggtgtc 14935302
Query: 1446 ttcatactcttatgccgtctaccctcatccctctctataccatgg 1490
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 14935303 ttcatactcttatgccgtctaccttcatccctctctataccatgg 14935347
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 508 tcagattgtatcccaaggtatccccatgagagcaagaatgatccactctctttcaggaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14906048 tcagattgtatcccaaggtatccccatgagagcaagaatgatccactctctttcaggaaa 14906107
Query: 568 aaagtccgcaattccctatgggacaaagtcacag 601
||||||||||||||||||||||||||||||||||
Sbjct: 14906108 aaagtccgcaattccctatgggacaaagtcacag 14906141
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 650 gctgttgagaaatatcccaacgcaaaggtgcactttggccaccagctgttgaagtgtcgc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14917459 gctgttgagaaatatcccaacgcaaaggtgcactttggccaccagctgttgaagtgtcgc 14917518
Query: 710 cctgagacaggagtgatcaccttgcttgg 738
|||||||||||||||||||||||||||||
Sbjct: 14917519 cctgagacaggagtgatcaccttgcttgg 14917547
Score = 167 bits (84), Expect = 2e-38
Identities = 98/100 (98%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 412 agatatccgaatggctgaatttgcacgtggaagaagcattaatttggccctttcttatag 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14902199 agatatccgaatggctgaatttgcacgtggaagaagcattaatttggccctttcttatag 14902258
Query: 472 aggaagacaagccttgaaagccattggtctggaagatcag 511
||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 14902259 aggaagacaagcc-tgaaagccatt-gtctggaagatcag 14902296
Score = 165 bits (83), Expect = 9e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1305 gtatgtgtcttcctgaattctccaaatttagaattccagatgaccacgcaatttcagacc 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14933620 gtatgtgtcttcctgaattctccaaatttagaattccagatgaccacgcaatttcagacc 14933679
Query: 1365 tgtccatgtacaattacatagag 1387
|||||||||||||||||||||||
Sbjct: 14933680 tgtccatgtacaattacatagag 14933702
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 905 tttgccatggaacctaattatctgcatatttggcctagagatacctttatgatgattgca 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14922685 tttgccatggaacctaattatctgcatatttggcctagagatacctttatgatgattgca 14922744
Query: 965 cttcctaacatg 976
||||||||||||
Sbjct: 14922745 cttcctaacatg 14922756
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 343 ggttggatccttaaatgcgtgcttcctcgccaagaggaatttccaagttgatgtatatga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14901851 ggttggatccttaaatgcgtgcttcctcgccaagaggaatttccaagttgatgtatatga 14901910
Query: 403 atccagggaag 413
|||||||||||
Sbjct: 14901911 atccagggaag 14901921
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1246 gggctttgaagactgcttggtatttgatgaattaatggataaattcaataatgactttag 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14930315 gggctttgaagactgcttggtatttgatgaattaatggataaattcaataatgactttag 14930374
Query: 1306 ta 1307
||
Sbjct: 14930375 ta 14930376
Score = 103 bits (52), Expect = 3e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 599 cagtatattctttctataagcagagaaaatctaaacaaggatctattgaccg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14913683 cagtatattctttctataagcagagaaaatctaaacaaggatctattgaccg 14913734
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,442,831
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 14
Length of query: 1499
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1478
Effective length of database: 2,808,413,156
Effective search space: 4150834644568
Effective search space used: 4150834644568
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)