Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008854
(1793 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776555.1| ornithine decarboxylase [Bos taurus]. 892 0.0
Alignment gi|XP_001256848.2| PREDICTED: ornithine decarboxylase-like, par... 783 0.0
Alignment gi|NP_001033599.1| arginine decarboxylase [Bos taurus]. 468 e-132
Alignment gi|NP_001076080.1| antizyme inhibitor 1 [Bos taurus]. 443 e-124
Alignment gi|XP_002685706.1| PREDICTED: ornithine decarboxylase 1-like [B... 346 4e-95
Alignment gi|XP_610618.4| PREDICTED: ornithine decarboxylase 1-like [Bos ... 345 1e-94
>ref|NP_776555.1| ornithine decarboxylase [Bos taurus].
Length = 461
Score = 892 bits (2304), Expect = 0.0
Identities = 436/461 (94%), Positives = 447/461 (96%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MNSFSNEE DCHFLDEGFTAKDILDQKINEVS +DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNSFSNEEFDCHFLDEGFTAKDILDQKINEVSYSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSRTIV+TLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERA++LDIDVIGVSFHVGSGCTDPETF QAISDARCVFDMGAEVGF+MYLLDIGGGFPG
Sbjct: 181 LERAKELDIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SEDVKLKFEEIT VINPALDKYFP DSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ
Sbjct: 241 SEDVKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 300
Query: 959 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTC 1138
TGSDDEEE++++TFMYYVNDGVYGSFNCILYDHAHV+PLLQKRPKPDEKYYSSSIWGPTC
Sbjct: 301 TGSDDEEESTDRTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTC 360
Query: 1139 DGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI 1318
DGLDRIVERC LPEMHVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGPTWQLMQQI
Sbjct: 361 DGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLMQQI 420
Query: 1319 RNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
R DFPP V E DVGPLPVSCAWESGM+RH AACAS RINV
Sbjct: 421 RTQDFPPGVEEPDVGPLPVSCAWESGMKRHSAACASTRINV 461
>ref|XP_001256848.2| PREDICTED: ornithine decarboxylase-like, partial [Bos taurus].
Length = 420
Score = 783 bits (2022), Expect = 0.0
Identities = 388/417 (93%), Positives = 399/417 (95%), Gaps = 3/417 (0%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MNSFSNEE DCHFLDEGFTAKDILDQKINEVS +DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNSFSNEEFDCHFLDEGFTAKDILDQKINEVSYSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSRTIV+TLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERA++LDIDVIGVSFHVGSGCTDPETF QAISDARCVFDMGAEVGF+MYLLDIGGGFPG
Sbjct: 181 LERAKELDIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SEDVKLKFEEIT VINPALDKYFP DSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ
Sbjct: 241 SEDVKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 300
Query: 959 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQK---RPKPDEKYYSSSIWG 1129
TGSDDEEE++++TFMYYVNDGVYGSFNCILYDHAHV+PLLQK +PDEKYYSSSIWG
Sbjct: 301 TGSDDEEESTDRTFMYYVNDGVYGSFNCILYDHAHVKPLLQKYLPNTQPDEKYYSSSIWG 360
Query: 1130 PTCDGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTW 1300
PTCDGLDRI ERC L GDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGPTW
Sbjct: 361 PTCDGLDRIDERCNLLRCMWGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTW 417
>ref|NP_001033599.1| arginine decarboxylase [Bos taurus].
Length = 502
Score = 468 bits (1204), Expect = e-132
Identities = 229/440 (52%), Positives = 315/440 (71%), Gaps = 3/440 (0%)
Frame = +2
Query: 80 ELDCHFLDEGFTAKDILDQKINEVS--ATDDKDAFYVADLGDILKKHLRWLKALPRVTPF 253
E D ++EGF+ +D+L++ S T++ AF+VADLG +++KH +LK LPRV F
Sbjct: 7 ETDFVMVEEGFSTRDLLEELTLGASQATTEEVAAFFVADLGAVVRKHFCFLKCLPRVRSF 66
Query: 254 YAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAAN 433
YAVKCN S +++ LA +G GF CA+K E++LVQ +GVP +IIYANPCKQ++ IKYAA
Sbjct: 67 YAVKCNSSPGVLKVLAELGLGFSCANKAEMELVQHIGVPASKIIYANPCKQIAHIKYAAK 126
Query: 434 NGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAR 613
+GV++++FD+E+EL KV ++HP AK+VL +AT+DS ++ RLS+KFGA+LK+ R LLE A+
Sbjct: 127 HGVRLLSFDNEMELAKVVKSHPSAKMVLCVATEDSHSLSRLSLKFGASLKSCRHLLENAK 186
Query: 614 DLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVK 793
++V+GVSFH+GS C DP+ +AQ+I+DAR VF+MGAE+G M++LD+GGGFPG ED K
Sbjct: 187 RDHVEVVGVSFHIGSDCPDPQAYAQSIADARVVFEMGAELGHRMHILDLGGGFPGVEDAK 246
Query: 794 LKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDD 973
++FEEI VIN ALD YFP GV I+A+ GRYYV SAFTLAV+IIAKK VL +Q G ++
Sbjct: 247 VRFEEIASVINSALDLYFPEGCGVDILAKLGRYYVTSAFTLAVSIIAKKEVLLDQPGREE 306
Query: 974 EEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDR 1153
E +S ++ +Y++ +GVYG FN +L+D A P+LQK+P ++ YSSS+WGP G D
Sbjct: 307 ETSSSPKSVVYHLGEGVYGVFNSVLFDSACPAPILQKKPSTEQPLYSSSLWGPVASGCDC 366
Query: 1154 IVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQIRNHDF 1333
+ E LP++HVGDW++FENMGAYTV S G Q I Y MS W+ +Q
Sbjct: 367 VAEGLWLPQLHVGDWLVFENMGAYTVGVGSLLRGAQTCRITYAMSRVAWEALQ---GQLL 423
Query: 1334 PPEVGEQDVGPL-PVSCAWE 1390
P E E G P+SC WE
Sbjct: 424 PAEQDEDAEGMCKPLSCGWE 443
>ref|NP_001076080.1| antizyme inhibitor 1 [Bos taurus].
Length = 448
Score = 443 bits (1140), Expect = e-124
Identities = 222/406 (54%), Positives = 291/406 (71%), Gaps = 1/406 (0%)
Frame = +2
Query: 98 LDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDS 277
LDEG +++D + E + T K+AF+V DLG I+KKH +W + ++ PFY VKCN +
Sbjct: 15 LDEGTNLGNVIDNYVYEHTLTG-KNAFFVGDLGKIVKKHSQWQNIVAQIKPFYTVKCNST 73
Query: 278 RTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTF 457
+++ LAA+GTGF C+SKTE+ LVQ LGV PE IIY +PCKQVSQIKYAA GV +MT
Sbjct: 74 PAVLEILAALGTGFACSSKTEMALVQELGVSPENIIYISPCKQVSQIKYAAKVGVNIMTC 133
Query: 458 DSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDIDVIG 637
D+EVEL K+AR HP AK++L IAT+DS ++KFG TLK R LLE A++LD+ +IG
Sbjct: 134 DNEVELKKIARNHPNAKVLLHIATEDSIGGGEGNMKFGTTLKNCRHLLECAKELDVQIIG 193
Query: 638 VSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITG 817
V FHV S C + + + A+SDARCVFDM E GF+M +LDIGGGF G+E + EE+
Sbjct: 194 VKFHVSSACKESQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFTGTE---FQLEEVNH 250
Query: 818 VINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEEAS-EQ 994
VI+P LD YFP SG++II+EPG Y+V+SAFTLAVNI+AKK+V ++ S + S E
Sbjct: 251 VISPLLDVYFPEGSGIKIISEPGSYFVSSAFTLAVNIVAKKVVENDKFSSGVGKTGSDEP 310
Query: 995 TFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCRL 1174
FMYY+NDGVYGSF L + + P + K+ K DE ++SS+WGP+CD LD+IVE C L
Sbjct: 311 AFMYYMNDGVYGSFASKLSEDLNTIPEVHKKYKADEPLFTSSLWGPSCDELDQIVENCLL 370
Query: 1175 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQ 1312
PE++VGDW++F+NMGA +V S FN FQRPAIYY+MS W MQ
Sbjct: 371 PELNVGDWLIFDNMGADSVHEPSAFNDFQRPAIYYMMSYSDWYEMQ 416
>ref|XP_002685706.1| PREDICTED: ornithine decarboxylase 1-like [Bos taurus].
Length = 683
Score = 346 bits (887), Expect = 4e-95
Identities = 193/424 (45%), Positives = 268/424 (63%), Gaps = 3/424 (0%)
Frame = +2
Query: 98 LDEGFTAKDILDQKINEVSAT--DDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCN 271
L+ G TA D++ +KI E+S + D + AF VADL + +H + +ALPRV+PFY VKCN
Sbjct: 41 LEPGETAWDVVLKKIKELSVSWRDCRHAFMVADLDVLASRHQVFRQALPRVSPFYVVKCN 100
Query: 272 DSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMM 451
S +++ LAA+GT FDC+S+ E++ V LGV P RI+YAN CK VS I++A+ +GV+++
Sbjct: 101 SSPWMLRVLAALGTSFDCSSQGELEQVLDLGVAPSRIVYANACKPVSHIRFASLHGVKLL 160
Query: 452 TFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDIDV 631
F+SE EL+KVA+ HP A+LVL T DS ++ LS KFGA L+ LLE ARDL + V
Sbjct: 161 VFNSEEELIKVAQHHPGARLVLWW-TQDSDSIFPLSSKFGARLEVCEHLLESARDLGLAV 219
Query: 632 IGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEI 811
+G SFHVGS C P F +AI D R VF+MG+ +G M LLDI GGF E +FEE+
Sbjct: 220 VGTSFHVGSRCQTPRNFMKAIVDCRRVFEMGSSIGHDMSLLDIRGGFSREEGSDPEFEEV 279
Query: 812 TGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEEASE 991
GVIN AL + FP SGV +IAEPGR+Y T AVNIIAKK VL E
Sbjct: 280 AGVINAALAQDFPEGSGVEVIAEPGRFYATFVCTTAVNIIAKKAVL---------EPRGR 330
Query: 992 QTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDRI-VERC 1168
+ +YY+NDG YG+F + P++ K P + +++GPTCD D++ ++
Sbjct: 331 RKLLYYLNDGHYGTFRIFPRESEPRMPIMVKELSPKLSLFPCTLFGPTCDAFDKLFLKEV 390
Query: 1169 RLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQIRNHDFPPEVG 1348
+LPE+ VGDW++F MGAYT +STF+G +I Y + GP ++ + +D +G
Sbjct: 391 QLPELDVGDWLVFPFMGAYTSVLSSTFSGLSPTSICYAV-GPELRVGEVRAEND----IG 445
Query: 1349 EQDV 1360
E +V
Sbjct: 446 ETEV 449
>ref|XP_610618.4| PREDICTED: ornithine decarboxylase 1-like [Bos taurus].
Length = 441
Score = 345 bits (884), Expect = 1e-94
Identities = 189/402 (47%), Positives = 258/402 (64%), Gaps = 3/402 (0%)
Frame = +2
Query: 98 LDEGFTAKDILDQKINEVSAT--DDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCN 271
L+ G TA D++ +KI E+S + D + AF VADL + +H + +ALPRV+PFY VKCN
Sbjct: 41 LEPGETAWDVVLKKIKELSVSWRDCRHAFMVADLDVLASRHQVFRQALPRVSPFYVVKCN 100
Query: 272 DSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMM 451
S +++ LAA+GT FDC+S+ E++ V LGV P RI+YAN CK VS I++A+ +GV+++
Sbjct: 101 SSPWMLRVLAALGTSFDCSSQGELEQVLDLGVAPSRIVYANACKPVSHIRFASLHGVKLL 160
Query: 452 TFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDIDV 631
F+SE EL+KVA+ HP A+LVL T DS ++ LS KFGA L+ LLE ARDL + V
Sbjct: 161 VFNSEEELIKVAQHHPGARLVLWW-TQDSDSIFPLSSKFGARLEVCEHLLESARDLGLAV 219
Query: 632 IGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEI 811
+G SFHVGS C P F +AI D R VF+MG+ +G M LLDI GGF E +FEE+
Sbjct: 220 VGTSFHVGSRCQTPRNFMKAIVDCRRVFEMGSSIGHDMSLLDIRGGFSREEGSDPEFEEV 279
Query: 812 TGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEEASE 991
GVIN AL + FP SGV +IAEPGR+Y T AVNIIAKK VL E
Sbjct: 280 AGVINAALAQDFPEGSGVEVIAEPGRFYATFVCTTAVNIIAKKAVL---------EPRGR 330
Query: 992 QTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDRI-VERC 1168
+ +YY+NDG YG+F + P++ K P + +++GPTCD D++ ++
Sbjct: 331 RKLLYYLNDGHYGTFRIFPRESEPRMPIMVKELSPKLSLFPCTLFGPTCDAFDKLFLKEV 390
Query: 1169 RLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGP 1294
+LPE+ VGDW++F MGAYT +STF+G +I Y + GP
Sbjct: 391 QLPELDVGDWLVFPFMGAYTSVLSSTFSGLSPTSICYAV-GP 431
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 72,550,613
Number of extensions: 2090209
Number of successful extensions: 6454
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6433
Number of HSP's successfully gapped: 6
Length of query: 597
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 489
Effective length of database: 14,107,870
Effective search space: 6898748430
Effective search space used: 6898748430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008854
(1793 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856711.1| PREDICTED: similar to Ornithine decarboxylase (... 887 0.0
Alignment gi|XP_848547.1| PREDICTED: similar to Ornithine decarboxylase (... 887 0.0
Alignment gi|XP_856595.1| PREDICTED: similar to Ornithine decarboxylase (... 880 0.0
Alignment gi|XP_856636.1| PREDICTED: similar to Ornithine decarboxylase (... 872 0.0
Alignment gi|XP_856512.1| PREDICTED: similar to Ornithine decarboxylase (... 866 0.0
Alignment gi|XP_856558.1| PREDICTED: similar to Ornithine decarboxylase (... 861 0.0
Alignment gi|XP_856678.1| PREDICTED: similar to Ornithine decarboxylase (... 854 0.0
Alignment gi|XP_856472.1| PREDICTED: similar to Ornithine decarboxylase (... 805 0.0
Alignment gi|XP_532874.2| PREDICTED: similar to Ornithine decarboxylase (... 637 0.0
Alignment gi|XP_535320.2| PREDICTED: similar to ornithine decarboxylase-l... 462 e-130
>ref|XP_856711.1| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 9 [Canis
familiaris].
Length = 461
Score = 887 bits (2292), Expect = 0.0
Identities = 432/461 (93%), Positives = 449/461 (97%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MN+F+N E DCHFLDEGFTAKDILDQKINEVS++DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNNFNNAEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSRTIV+TLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYA+NNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYASNNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERAR+L+IDVIGVSFHVGSGCTDPETF QAISDARCVFDMGAEVGF+MYLLDIGGGFPG
Sbjct: 181 LERARELNIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SEDVKLKFEEIT VINPALDKYFP DSGVR+IAEPGRYYVASAFTLAVNIIAKKLVLKEQ
Sbjct: 241 SEDVKLKFEEITSVINPALDKYFPADSGVRVIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 300
Query: 959 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTC 1138
TGSDDE+E+SEQTFMYYVNDGVYGSFNCILYDHAHV+PLLQKRPKPDEKYYS+SIWGPTC
Sbjct: 301 TGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSTSIWGPTC 360
Query: 1139 DGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI 1318
DGLDRIVERC LPE+HVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGPTWQLMQQI
Sbjct: 361 DGLDRIVERCDLPEIHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLMQQI 420
Query: 1319 RNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
+NHDFPPEV EQDV LPVSCAWESGM+R PAACASA INV
Sbjct: 421 QNHDFPPEVEEQDVSTLPVSCAWESGMKRPPAACASASINV 461
>ref|XP_848547.1| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 2 [Canis
familiaris].
Length = 461
Score = 887 bits (2292), Expect = 0.0
Identities = 432/461 (93%), Positives = 449/461 (97%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MN+F+N E DCHFLDEGFTAKDILDQKINEVS++DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNNFNNAEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSRTIV+TLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYA+NNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYASNNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERAR+L+IDVIGVSFHVGSGCTDPETF QAISDARCVFDMGAEVGF+MYLLDIGGGFPG
Sbjct: 181 LERARELNIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SEDVKLKFEEIT VINPALDKYFP DSGVR+IAEPGRYYVASAFTLAVNIIAKKLVLKEQ
Sbjct: 241 SEDVKLKFEEITSVINPALDKYFPADSGVRVIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 300
Query: 959 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTC 1138
TGSDDE+E+SEQTFMYYVNDGVYGSFNCILYDHAHV+PLLQKRPKPDEKYYS+SIWGPTC
Sbjct: 301 TGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSTSIWGPTC 360
Query: 1139 DGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI 1318
DGLDRIVERC LPE+HVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGPTWQLMQQI
Sbjct: 361 DGLDRIVERCDLPEIHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLMQQI 420
Query: 1319 RNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
+NHDFPPEV EQDV LPVSCAWESGM+R PAACASA INV
Sbjct: 421 QNHDFPPEVEEQDVSTLPVSCAWESGMKRPPAACASASINV 461
>ref|XP_856595.1| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 6 [Canis
familiaris].
Length = 467
Score = 880 bits (2275), Expect = 0.0
Identities = 432/467 (92%), Positives = 449/467 (96%), Gaps = 6/467 (1%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MN+F+N E DCHFLDEGFTAKDILDQKINEVS++DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNNFNNAEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSRTIV+TLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYA+NNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYASNNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERAR+L+IDVIGVSFHVGSGCTDPETF QAISDARCVFDMGAEVGF+MYLLDIGGGFPG
Sbjct: 181 LERARELNIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SEDVKLKFEEIT VINPALDKYFP DSGVR+IAEPGRYYVASAFTLAVNIIAKKLVLKEQ
Sbjct: 241 SEDVKLKFEEITSVINPALDKYFPADSGVRVIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 300
Query: 959 TGSD------DEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSS 1120
TGSD DE+E+SEQTFMYYVNDGVYGSFNCILYDHAHV+PLLQKRPKPDEKYYS+S
Sbjct: 301 TGSDDYSAFLDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSTS 360
Query: 1121 IWGPTCDGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTW 1300
IWGPTCDGLDRIVERC LPE+HVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGPTW
Sbjct: 361 IWGPTCDGLDRIVERCDLPEIHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTW 420
Query: 1301 QLMQQIRNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
QLMQQI+NHDFPPEV EQDV LPVSCAWESGM+R PAACASA INV
Sbjct: 421 QLMQQIQNHDFPPEVEEQDVSTLPVSCAWESGMKRPPAACASASINV 467
>ref|XP_856636.1| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 7 [Canis
familiaris].
Length = 462
Score = 872 bits (2254), Expect = 0.0
Identities = 428/462 (92%), Positives = 447/462 (96%), Gaps = 1/462 (0%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MN+F+N E DCHFLDEGFTAKDILDQKINEVS++DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNNFNNAEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSRTIV+TLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYA+NNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYASNNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERAR+L+IDVIGVSFHVGSGCTDPETF QAISDARCVFDMGAEVGF+MYLLDIGGGFPG
Sbjct: 181 LERARELNIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SEDVKLKFEEIT VINPALDKYFP DSGVR+IAEPGRYYVASAFTLAVNIIAKKLVLKEQ
Sbjct: 241 SEDVKLKFEEITSVINPALDKYFPADSGVRVIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 300
Query: 959 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRP-KPDEKYYSSSIWGPT 1135
TGSDDE+E+SEQTFMYYVNDGVYGSFNCILYDHAHV+PLLQK P + +EKYYS+SIWGPT
Sbjct: 301 TGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKVPSEHNEKYYSTSIWGPT 360
Query: 1136 CDGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQ 1315
CDGLDRIVERC LPE+HVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGPTWQLMQQ
Sbjct: 361 CDGLDRIVERCDLPEIHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLMQQ 420
Query: 1316 IRNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
I+NHDFPPEV EQDV LPVSCAWESGM+R PAACASA INV
Sbjct: 421 IQNHDFPPEVEEQDVSTLPVSCAWESGMKRPPAACASASINV 462
>ref|XP_856512.1| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 4 [Canis
familiaris].
Length = 457
Score = 866 bits (2237), Expect = 0.0
Identities = 425/461 (92%), Positives = 442/461 (95%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MN+F+N E DCHFLDEGFTAKDILDQKINEVS++DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNNFNNAEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSRTIV+TLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYA+NNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYASNNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERAR+L+IDVIGVSFHVGSGCTDPETF QAISDARCVFDMGAEVGF+MYLLDIGGGFPG
Sbjct: 181 LERARELNIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SEDVKLKFEEIT VINPALDKYFP DSGVR+IAEPGRYYVASAFTLAVNIIAKKLVLKEQ
Sbjct: 241 SEDVKLKFEEITSVINPALDKYFPADSGVRVIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 300
Query: 959 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTC 1138
TGSD + + FMYYVNDGVYGSFNCILYDHAHV+PLLQKRPKPDEKYYS+SIWGPTC
Sbjct: 301 TGSD----GTYKGFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSTSIWGPTC 356
Query: 1139 DGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI 1318
DGLDRIVERC LPE+HVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGPTWQLMQQI
Sbjct: 357 DGLDRIVERCDLPEIHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLMQQI 416
Query: 1319 RNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
+NHDFPPEV EQDV LPVSCAWESGM+R PAACASA INV
Sbjct: 417 QNHDFPPEVEEQDVSTLPVSCAWESGMKRPPAACASASINV 457
>ref|XP_856558.1| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 5 [Canis
familiaris].
Length = 457
Score = 861 bits (2225), Expect = 0.0
Identities = 424/461 (91%), Positives = 441/461 (95%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MN+F+N E DCHFLDEGFTAKDILDQKINEVS++DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNNFNNAEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSRTIV+TLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYA+NNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYASNNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERAR+L+IDVIGVSFHVGSGCTDPETF QAISDARCVFDMGAEVGF+MYLLDIGGGFPG
Sbjct: 181 LERARELNIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SEDVKLKFEEIT VINPALDKYFP DSGVR+IAEPGRYYVASAFTLAVNIIAKKLVLKEQ
Sbjct: 241 SEDVKLKFEEITSVINPALDKYFPADSGVRVIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 300
Query: 959 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTC 1138
TGSDDE+E+SEQTFMYYVNDGVYGSFNCILYDHAHV+PLLQK P +S SIWGPTC
Sbjct: 301 TGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKVPSE----HSISIWGPTC 356
Query: 1139 DGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI 1318
DGLDRIVERC LPE+HVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGPTWQLMQQI
Sbjct: 357 DGLDRIVERCDLPEIHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLMQQI 416
Query: 1319 RNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
+NHDFPPEV EQDV LPVSCAWESGM+R PAACASA INV
Sbjct: 417 QNHDFPPEVEEQDVSTLPVSCAWESGMKRPPAACASASINV 457
>ref|XP_856678.1| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 8 [Canis
familiaris].
Length = 448
Score = 854 bits (2206), Expect = 0.0
Identities = 420/461 (91%), Positives = 436/461 (94%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MN+F+N E DCHFLDEGFTAKDILDQKINEVS++DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNNFNNAEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSRTIV+TLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYA+NNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYASNNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERAR+L+IDVIGVSFHVGSGCTDPETF QAISDARCVFDMGAEVGF+MYLLDIGGGFPG
Sbjct: 181 LERARELNIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SEDVKLKFEEIT VINPALDKYFP DSGVR+IAEPGRYYVASAFTLAVNIIAKKL
Sbjct: 241 SEDVKLKFEEITSVINPALDKYFPADSGVRVIAEPGRYYVASAFTLAVNIIAKKL----- 295
Query: 959 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTC 1138
+SEQTFMYYVNDGVYGSFNCILYDHAHV+PLLQKRPKPDEKYYS+SIWGPTC
Sbjct: 296 --------SSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSTSIWGPTC 347
Query: 1139 DGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI 1318
DGLDRIVERC LPE+HVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGPTWQLMQQI
Sbjct: 348 DGLDRIVERCDLPEIHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLMQQI 407
Query: 1319 RNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
+NHDFPPEV EQDV LPVSCAWESGM+R PAACASA INV
Sbjct: 408 QNHDFPPEVEEQDVSTLPVSCAWESGMKRPPAACASASINV 448
>ref|XP_856472.1| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 3 [Canis
familiaris].
Length = 436
Score = 805 bits (2078), Expect = 0.0
Identities = 402/464 (86%), Positives = 418/464 (90%), Gaps = 3/464 (0%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MN+F+N E DCHFLDEGFTAKDILDQKINEVS++DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNNFNNAEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSRTIV+TLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYA+NNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYASNNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERAR+L+IDVIGVSFHVGSGCTDPETF QAISDARCVFDMG
Sbjct: 181 LERARELNIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMG------------------ 222
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
IT VINPALDKYFP DSGVR+IAEPGRYYVASAFTLAVNIIAKKLVLKEQ
Sbjct: 223 ----------ITSVINPALDKYFPADSGVRVIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 272
Query: 959 TGSD---DEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWG 1129
T DE+E+SEQTFMYYVNDGVYGSFNCILYDHAHV+PLLQKRPKPDEKYYS+SIWG
Sbjct: 273 TDYSAFLDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSTSIWG 332
Query: 1130 PTCDGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLM 1309
PTCDGLDRIVERC LPE+HVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGPTWQLM
Sbjct: 333 PTCDGLDRIVERCDLPEIHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLM 392
Query: 1310 QQIRNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
QQI+NHDFPPEV EQDV LPVSCAWESGM+R PAACASA INV
Sbjct: 393 QQIQNHDFPPEVEEQDVSTLPVSCAWESGMKRPPAACASASINV 436
>ref|XP_532874.2| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 1 [Canis
familiaris].
Length = 331
Score = 637 bits (1644), Expect = 0.0
Identities = 310/331 (93%), Positives = 321/331 (96%)
Frame = +2
Query: 449 MTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDID 628
MTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAR+L+ID
Sbjct: 1 MTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARELNID 60
Query: 629 VIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEE 808
VIGVSFHVGSGCTDPETF QAISDARCVFDMGAEVGF+MYLLDIGGGFPGSEDVKLKFEE
Sbjct: 61 VIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGGFPGSEDVKLKFEE 120
Query: 809 ITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEEAS 988
IT VINPALDKYFP DSGVR+IAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDE+E+S
Sbjct: 121 ITSVINPALDKYFPADSGVRVIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEDESS 180
Query: 989 EQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERC 1168
EQTFMYYVNDGVYGSFNCILYDHAHV+PLLQKRPKPDEKYYS+SIWGPTCDGLDRIVERC
Sbjct: 181 EQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSTSIWGPTCDGLDRIVERC 240
Query: 1169 RLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQIRNHDFPPEVG 1348
LPE+HVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGPTWQLMQQI+NHDFPPEV
Sbjct: 241 DLPEIHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTWQLMQQIQNHDFPPEVE 300
Query: 1349 EQDVGPLPVSCAWESGMERHPAACASARINV 1441
EQDV LPVSCAWESGM+R PAACASA INV
Sbjct: 301 EQDVSTLPVSCAWESGMKRPPAACASASINV 331
>ref|XP_535320.2| PREDICTED: similar to ornithine decarboxylase-like protein isoform 1
[Canis familiaris].
Length = 460
Score = 462 bits (1190), Expect = e-130
Identities = 229/440 (52%), Positives = 308/440 (70%), Gaps = 3/440 (0%)
Frame = +2
Query: 80 ELDCHFLDEGFTAKDILDQKINEVS--ATDDKDAFYVADLGDILKKHLRWLKALPRVTPF 253
E D ++EGF+ +D+L++ S D AF+VADLG +++KH LK LPRV PF
Sbjct: 7 ETDFVMVEEGFSTRDLLEELTLGASQATAGDVAAFFVADLGAVVRKHFCLLKCLPRVRPF 66
Query: 254 YAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAAN 433
Y VKCN S +++ LA +G GF CA+K E++LVQ +GVP +I+YANPCKQ++QIKYAA
Sbjct: 67 YTVKCNSSPGVLKVLAELGLGFSCANKAEMELVQRIGVPASKIVYANPCKQIAQIKYAAK 126
Query: 434 NGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAR 613
+GV++++FD+EVEL KV ++HP AK+VL IATDDS ++ LS KFGA+LK+ R LLE A+
Sbjct: 127 HGVRLLSFDNEVELAKVVKSHPSAKMVLCIATDDSHSLSHLSFKFGASLKSCRHLLENAK 186
Query: 614 DLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVK 793
++V+GVSFHVGSGC D + Q+I+DAR VF+MGAE+G M++LD+GGGFPG E K
Sbjct: 187 RSHVEVVGVSFHVGSGCPDLHAYTQSIADARLVFEMGAELGHRMHILDLGGGFPGLEGAK 246
Query: 794 LKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDD 973
++FEEI VIN ALD YFP GV I+A GRYYV SAFTLAV+IIAKK VL +Q G ++
Sbjct: 247 VRFEEIATVINSALDLYFPEGCGVDILARLGRYYVTSAFTLAVSIIAKKEVLLDQPGREE 306
Query: 974 EEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDR 1153
E ++ +T +Y++ +GVYG FN +L+D+ P+LQK+ ++ YSSS+WGP DG D
Sbjct: 307 ETGSTPKTIVYHLGEGVYGIFNSVLFDNTCPTPILQKKSSTEQPLYSSSLWGPVADGSDC 366
Query: 1154 IVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQIRNHDF 1333
+ E LP++HVGDW++FENMGAYTV S F G Q + Y MS W + +R
Sbjct: 367 VAEGLWLPQLHVGDWLVFENMGAYTVGMGSLFGGTQTCRVTYAMSRVAW---EALRGQLL 423
Query: 1334 PPEVGEQDVGPL-PVSCAWE 1390
P E E G P+SC WE
Sbjct: 424 PAEQDEDTEGMCKPLSCGWE 443
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,237,147
Number of extensions: 2097636
Number of successful extensions: 6535
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 6500
Number of HSP's successfully gapped: 25
Length of query: 597
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 488
Effective length of database: 15,240,880
Effective search space: 7437549440
Effective search space used: 7437549440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008854
(1793 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116455.1| ornithine decarboxylase [Sus scrofa]. 936 0.0
Alignment gi|NP_001116665.1| arginine decarboxylase [Sus scrofa]. 474 e-134
Alignment gi|NP_001121960.1| antizyme inhibitor 1 [Sus scrofa]. 441 e-124
Alignment gi|XP_003127815.2| PREDICTED: ornithine decarboxylase-like [Sus... 362 e-100
Alignment gi|XP_003356315.1| PREDICTED: ornithine decarboxylase-like [Sus... 264 1e-70
Alignment gi|XP_003361625.1| PREDICTED: arginine decarboxylase-like, part... 72 1e-12
>ref|NP_001116455.1| ornithine decarboxylase [Sus scrofa].
Length = 461
Score = 936 bits (2419), Expect = 0.0
Identities = 460/461 (99%), Positives = 460/461 (99%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG
Sbjct: 181 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ
Sbjct: 241 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 300
Query: 959 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTC 1138
TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTC
Sbjct: 301 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTC 360
Query: 1139 DGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI 1318
DGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI
Sbjct: 361 DGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI 420
Query: 1319 RNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
RNHDFPPEV EQDVGPLPVSCAWESGMERHPAACASARINV
Sbjct: 421 RNHDFPPEVEEQDVGPLPVSCAWESGMERHPAACASARINV 461
>ref|NP_001116665.1| arginine decarboxylase [Sus scrofa].
Length = 460
Score = 474 bits (1220), Expect = e-134
Identities = 233/440 (52%), Positives = 316/440 (71%), Gaps = 3/440 (0%)
Frame = +2
Query: 80 ELDCHFLDEGFTAKDILDQ-KINEVSATDDK-DAFYVADLGDILKKHLRWLKALPRVTPF 253
E D ++EGF+ +D+L++ + AT DK AF++ADLG +++KH +LK LPRV PF
Sbjct: 7 ETDFVMVEEGFSTRDLLEELTLGASQATTDKVAAFFLADLGAVVRKHFYFLKCLPRVRPF 66
Query: 254 YAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAAN 433
YAVKCN S +++ LA +G GF CA+K E++LVQ +GVP +IIYANPCKQ++QIKYAA
Sbjct: 67 YAVKCNSSPGVLKVLAELGLGFSCANKAEMELVQHIGVPTSKIIYANPCKQIAQIKYAAK 126
Query: 434 NGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAR 613
+GVQ+++FD+E+EL KV ++HP AK+VL IATDDS ++ LS KFGA+LK+ R LLE A+
Sbjct: 127 HGVQLLSFDNEMELAKVVKSHPSAKMVLCIATDDSHSLSHLSFKFGASLKSCRHLLENAK 186
Query: 614 DLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVK 793
++V+GVSFH+GSGC DP+ +AQ+I+DAR VF+MGAE+G M++LD+GGGFPG E K
Sbjct: 187 RNHMEVVGVSFHIGSGCPDPQAYAQSIADARLVFEMGAELGHRMHILDLGGGFPGVEGAK 246
Query: 794 LKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDD 973
++FEEI VIN ALD YFP G+ I+A+ GRYYV SAFTLAV+IIAKK VL +Q G ++
Sbjct: 247 VRFEEIASVINSALDLYFPEGCGIDILAKLGRYYVTSAFTLAVSIIAKKEVLLDQPGREE 306
Query: 974 EEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDR 1153
E ++ +T +Y++ +GVYG FN +L+D+ P+L K+P P++ YSSS+WGP DG D
Sbjct: 307 ETGSAPKTIVYHLGEGVYGIFNSVLFDNTCPTPVLPKKPSPEQPLYSSSLWGPVVDGCDC 366
Query: 1154 IVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQIRNHDF 1333
+ E LP +HVGDW++FENMGAYTV S G Q I Y MS W + +R
Sbjct: 367 VAEGLWLPSLHVGDWLVFENMGAYTVGMGSLLGGTQTCRITYAMSRVAW---EALRGQLL 423
Query: 1334 PPEVGEQDVGPL-PVSCAWE 1390
P E E G P+SC WE
Sbjct: 424 PAEQDEDTEGMCKPLSCGWE 443
>ref|NP_001121960.1| antizyme inhibitor 1 [Sus scrofa].
Length = 446
Score = 441 bits (1135), Expect = e-124
Identities = 218/405 (53%), Positives = 290/405 (71%)
Frame = +2
Query: 98 LDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDS 277
LDEG +++D + E + T K+AF+V DLG I+KKH +W + ++ PFY VKCN +
Sbjct: 15 LDEGTNLGNVIDNYVYEHTLTG-KNAFFVGDLGKIVKKHSQWQNIVAQIKPFYTVKCNST 73
Query: 278 RTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTF 457
+++ LAA+GTGF C+SKTE+ LVQ LGV PE IIY +PCKQVSQIKYAA GV +MT
Sbjct: 74 PAVLEILAALGTGFACSSKTEMALVQELGVSPENIIYISPCKQVSQIKYAAKVGVNIMTC 133
Query: 458 DSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDIDVIG 637
D+EVEL K+AR HP AK++L IAT+D+ ++KFG TLK R LLE A++LD+ +IG
Sbjct: 134 DNEVELKKIARNHPNAKVLLHIATEDNIGGEEGNMKFGTTLKNCRHLLECAKELDVQIIG 193
Query: 638 VSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITG 817
V FHV S C + + + A+SDARCVFDM E GF+M +LDIGGGF G++ + EE+
Sbjct: 194 VKFHVSSACKESQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFTGTQ---FQLEEVNH 250
Query: 818 VINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEEASEQT 997
VI+P LD YFP SG++II+EPG YYV+SAFTLAVNIIAKK+V + + + + E
Sbjct: 251 VISPLLDVYFPEGSGIKIISEPGSYYVSSAFTLAVNIIAKKVVENKFSSGVGKTGSDEPA 310
Query: 998 FMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCRLP 1177
FMYY+NDGVYGSF L + + P + K+ K DE ++SS+WGP+CD LD+I+E C LP
Sbjct: 311 FMYYLNDGVYGSFASKLSEDLNTIPEVHKKYKEDEPLFTSSLWGPSCDELDQIMENCLLP 370
Query: 1178 EMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQ 1312
E++VGDW++F+NMGA ++ S FN FQRPAIYY+MS W MQ
Sbjct: 371 ELNVGDWLIFDNMGADSLHEPSAFNDFQRPAIYYMMSYSDWYEMQ 415
>ref|XP_003127815.2| PREDICTED: ornithine decarboxylase-like [Sus scrofa].
Length = 577
Score = 362 bits (929), Expect = e-100
Identities = 202/425 (47%), Positives = 269/425 (63%), Gaps = 15/425 (3%)
Frame = +2
Query: 86 DCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVK 265
D L+ G TA ++ +KI E+S D +D F VA+L + ++H + +ALPRV+PFYAVK
Sbjct: 37 DLILLEPGETAWQVVLKKIRELSDGDVQDPFMVANLDVLPRRHQLFHQALPRVSPFYAVK 96
Query: 266 CNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ 445
CN++ +++ LAA+GTGFDCAS+ E++ V LGVPP RIIYANPCK VS I YAA++GVQ
Sbjct: 97 CNNNPWVLRVLAALGTGFDCASQGELEQVLGLGVPPSRIIYANPCKPVSHILYAAHHGVQ 156
Query: 446 MMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDI 625
++TFDSE EL+KVA+ +P A+LVLR+ T DS+++ LS KFGA L+ LL+ ARDL +
Sbjct: 157 LLTFDSEEELIKVAQHYPGARLVLRLWTQDSESIFSLSTKFGARLELCEHLLKSARDLGV 216
Query: 626 DVIGVSFHVGSGCTDPE--------------TFAQAISDARCVFDMGAEVGFSMYLLDIG 763
V+G S +G D E T QAI+D RC+F+MG +G M LDIG
Sbjct: 217 AVVGTS----TGTADSERTXXXXXGXXXPATTVQQAIADCRCLFEMGLRIGHDMNFLDIG 272
Query: 764 GGFPGSEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKL 943
GGFPG E + KFEE VIN L + FP SGV IIAEPGR+Y A T+AVNIIAKK
Sbjct: 273 GGFPGEEGLDPKFEE--XVINATLAQDFPEGSGVEIIAEPGRFYAAPVCTIAVNIIAKKA 330
Query: 944 VLKEQTGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSI 1123
V+ + + +YY+NDG YG F L D P++ K P+ +S +
Sbjct: 331 VV---------QPGGHRKLLYYLNDGYYGDFRVFLRDPEPKIPIVVKELGPEPPLFSCIL 381
Query: 1124 WGPTCDGLDRI-VERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTW 1300
+GPTCD D++ +E +LPE++VGDW++F MGAYT STFNGF PA GP
Sbjct: 382 FGPTCDAFDKLFLEELQLPELNVGDWLVFPTMGAYTNVMTSTFNGFP-PASICCTVGPEL 440
Query: 1301 QLMQQ 1315
Q+
Sbjct: 441 STCQE 445
>ref|XP_003356315.1| PREDICTED: ornithine decarboxylase-like [Sus scrofa].
Length = 266
Score = 264 bits (674), Expect = 1e-70
Identities = 133/244 (54%), Positives = 178/244 (72%)
Frame = +2
Query: 86 DCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVK 265
D L+ G TA ++ +KI E+S D +D F VA+L + ++H + +ALPRV+PFYAVK
Sbjct: 22 DLILLEPGETAWQVVLKKIRELSDGDVQDPFMVANLDVLPRRHQLFHQALPRVSPFYAVK 81
Query: 266 CNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQ 445
CN++ +++ LAA+GTGFDCAS+ E++ V LGVPP RIIYANPCK VS I YAA++GVQ
Sbjct: 82 CNNNPWVLRVLAALGTGFDCASQGELEQVLGLGVPPSRIIYANPCKPVSHILYAAHHGVQ 141
Query: 446 MMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDI 625
++TFDSE EL+KVA+ +P A+LVLR+ T DS+++ LS KFGA L+ LL+ ARDL +
Sbjct: 142 LLTFDSEEELIKVAQHYPGARLVLRLWTQDSESIFSLSTKFGARLELCEHLLKSARDLGV 201
Query: 626 DVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFE 805
V+G SFHVGS C P +F QAI+D R +F+MG +G M LDIGGGFPG E + KFE
Sbjct: 202 AVVGTSFHVGSSCQTPNSFKQAIADCRRLFEMGLRIGHDMNFLDIGGGFPGEEGLDPKFE 261
Query: 806 EITG 817
E+ G
Sbjct: 262 EVRG 265
>ref|XP_003361625.1| PREDICTED: arginine decarboxylase-like, partial [Sus scrofa].
Length = 82
Score = 71.6 bits (174), Expect = 1e-12
Identities = 36/76 (47%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Frame = +2
Query: 80 ELDCHFLDEGFTAKDILDQ-KINEVSATDDK-DAFYVADLGDILKKHLRWLKALPRVTPF 253
E D ++EGF+ +D+L++ + AT DK AF++ADLG +++KH +LK LPRV PF
Sbjct: 7 ETDFVMVEEGFSTRDLLEELTLGASQATTDKVAAFFLADLGAVVRKHFYFLKCLPRVRPF 66
Query: 254 YAVKCNDSRTIVQTLA 301
YAVKCN S +++ LA
Sbjct: 67 YAVKCNSSPGVLKVLA 82
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,048,603
Number of extensions: 1396697
Number of successful extensions: 4070
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4059
Number of HSP's successfully gapped: 6
Length of query: 597
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 492
Effective length of database: 8,729,747
Effective search space: 4295035524
Effective search space used: 4295035524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008854
(1793 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038642.2| ornithine decarboxylase [Mus musculus]. 847 0.0
Alignment gi|NP_766463.1| antizyme inhibitor 2 [Mus musculus]. 445 e-125
Alignment gi|NP_001095928.1| antizyme inhibitor 1 [Mus musculus]. 436 e-122
Alignment gi|NP_061215.1| antizyme inhibitor 1 [Mus musculus]. 436 e-122
Alignment gi|NP_001030044.1| ornithine decarboxylase-like [Mus musculus]. 372 e-103
>ref|NP_038642.2| ornithine decarboxylase [Mus musculus].
Length = 461
Score = 847 bits (2189), Expect = 0.0
Identities = 413/461 (89%), Positives = 435/461 (94%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
M+SF+ +E DCH LDEGFTAKDILDQKINEVS++DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MSSFTKDEFDCHILDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDSR IV TLAAIGTGFDCASKTEIQLVQ LGVP ER+IYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYAA+NGVQMMTFDSE+ELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL
Sbjct: 121 KYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERA++L+IDVIGVSFHVGSGCTDPETF QA+SDARCVFDM EVGFSM+LLDIGGGFPG
Sbjct: 181 LERAKELNIDVIGVSFHVGSGCTDPETFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SED KLKFEEIT VINPALDKYFP DSGVRIIAEPGRYYVASAFTLAVNIIAKK V KEQ
Sbjct: 241 SEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQ 300
Query: 959 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTC 1138
GSDDE+E++EQTFMYYVNDGVYGSFNCILYDHAHV+ LLQKRPKPDEKYYSSSIWGPTC
Sbjct: 301 PGSDDEDESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTC 360
Query: 1139 DGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI 1318
DGLDRIVERC LPEMHVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMS P WQLM+QI
Sbjct: 361 DGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLMKQI 420
Query: 1319 RNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
++H FPPEV EQD G LP+SCA ESGM+RHPAACASARINV
Sbjct: 421 QSHGFPPEVEEQDDGTLPMSCAQESGMDRHPAACASARINV 461
>ref|NP_766463.1| antizyme inhibitor 2 [Mus musculus].
Length = 459
Score = 445 bits (1145), Expect = e-125
Identities = 222/440 (50%), Positives = 310/440 (70%), Gaps = 3/440 (0%)
Frame = +2
Query: 80 ELDCHFLDEGFTAKDILDQ-KINEVSATDDK-DAFYVADLGDILKKHLRWLKALPRVTPF 253
E D ++EGF+ +D+L++ + AT K AF+VADLG +++KH +LK LPRV PF
Sbjct: 7 ESDFVMVEEGFSTRDLLEELTLGASQATSGKVAAFFVADLGAVVRKHFCFLKHLPRVRPF 66
Query: 254 YAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAAN 433
YAV CN S +++ LA +G GF CA+K E++LVQ +GVP +II ANPCKQV+QIKYAA
Sbjct: 67 YAVGCNSSLGVLKVLAELGLGFSCANKAEMELVQHIGVPASKIICANPCKQVAQIKYAAK 126
Query: 434 NGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAR 613
+GV++++FD+EVEL KV ++HP AK+VL IAT DS ++ LS++FGA+LK+ R LLE A+
Sbjct: 127 HGVRLLSFDNEVELAKVVKSHPSAKMVLCIATQDSHSLNHLSLRFGASLKSCRHLLENAK 186
Query: 614 DLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVK 793
++V+GVSFH+GSGC DP+ +AQ+I+DAR VF MG E+G +M +LD+GGGFPG E K
Sbjct: 187 KSHVEVVGVSFHIGSGCPDPQAYAQSIADARLVFQMGEELGHTMNILDLGGGFPGLEGAK 246
Query: 794 LKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDD 973
++FEE+ VIN ALD YFP GV I+AE GRYYV SAFT+AV+I+AK+ VL +Q ++
Sbjct: 247 VRFEEMASVINSALDLYFPEGCGVDILAELGRYYVTSAFTVAVSIVAKREVL-DQASREE 305
Query: 974 EEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDR 1153
+ A+ ++ +YY+++GVYG FN +L+D+ P LQK+P D+ YSSS+WGP +G D
Sbjct: 306 QTGAAPKSIVYYLDEGVYGVFNSVLFDNTCPTPALQKKPSADQPLYSSSLWGPAVEGCDC 365
Query: 1154 IVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQIRNHDF 1333
+ E LP++ VGDW++F+NMGAYTV S G Q + Y MS W + +R
Sbjct: 366 VAEGLWLPQLQVGDWLVFDNMGAYTVDTKSLLGGTQARRVTYAMSRLAW---EALRGQLL 422
Query: 1334 PPEVGEQDVGPL-PVSCAWE 1390
P E + G P+SC WE
Sbjct: 423 PAEEDQDAEGVCKPLSCGWE 442
>ref|NP_001095928.1| antizyme inhibitor 1 [Mus musculus].
Length = 448
Score = 436 bits (1122), Expect = e-122
Identities = 218/406 (53%), Positives = 291/406 (71%), Gaps = 1/406 (0%)
Frame = +2
Query: 98 LDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDS 277
LDEG +++D + E + T K+AF+V DLG I+KKH +W + ++ PFY VKCN +
Sbjct: 15 LDEGTNLGNVIDNYVYEHTLTG-KNAFFVGDLGKIVKKHSQWQTVVAQIKPFYTVKCNST 73
Query: 278 RTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTF 457
+++ LAA+GTGF C+SK E+ LVQ LGV PE II+ +PCKQVSQIKYAA GV +MT
Sbjct: 74 PAVLEILAALGTGFACSSKNEMALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTC 133
Query: 458 DSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDIDVIG 637
D+E+EL K+AR HP AK++L IAT+D+ ++KFG TLK R LLE A++LD+ +IG
Sbjct: 134 DNEIELKKIARNHPNAKVLLHIATEDNIGGEDGNMKFGTTLKNCRHLLECAKELDVQIIG 193
Query: 638 VSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITG 817
V FHV S C + + + A+SDARCVFDM E GF+M +LDIGGGF G+E ++ EE+
Sbjct: 194 VKFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFTGTE---IQLEEVNH 250
Query: 818 VINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEEAS-EQ 994
VI+P LD YFP SG++II+EPG YYV+SAFTLAVNIIAKK+V ++ S E+ S E
Sbjct: 251 VISPLLDIYFPEGSGIQIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEP 310
Query: 995 TFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCRL 1174
F+YY+NDGVYGSF L + + P + K+ K DE ++SS+WGP+CD LD+IVE C L
Sbjct: 311 AFVYYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDEPLFTSSLWGPSCDELDQIVESCLL 370
Query: 1175 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQ 1312
PE++VGDW++F+NMGA + S FN FQRPAIY++MS W MQ
Sbjct: 371 PELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYFMMSFSDWYEMQ 416
>ref|NP_061215.1| antizyme inhibitor 1 [Mus musculus].
Length = 448
Score = 436 bits (1122), Expect = e-122
Identities = 218/406 (53%), Positives = 291/406 (71%), Gaps = 1/406 (0%)
Frame = +2
Query: 98 LDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDS 277
LDEG +++D + E + T K+AF+V DLG I+KKH +W + ++ PFY VKCN +
Sbjct: 15 LDEGTNLGNVIDNYVYEHTLTG-KNAFFVGDLGKIVKKHSQWQTVVAQIKPFYTVKCNST 73
Query: 278 RTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTF 457
+++ LAA+GTGF C+SK E+ LVQ LGV PE II+ +PCKQVSQIKYAA GV +MT
Sbjct: 74 PAVLEILAALGTGFACSSKNEMALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTC 133
Query: 458 DSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDIDVIG 637
D+E+EL K+AR HP AK++L IAT+D+ ++KFG TLK R LLE A++LD+ +IG
Sbjct: 134 DNEIELKKIARNHPNAKVLLHIATEDNIGGEDGNMKFGTTLKNCRHLLECAKELDVQIIG 193
Query: 638 VSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITG 817
V FHV S C + + + A+SDARCVFDM E GF+M +LDIGGGF G+E ++ EE+
Sbjct: 194 VKFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFTGTE---IQLEEVNH 250
Query: 818 VINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEEAS-EQ 994
VI+P LD YFP SG++II+EPG YYV+SAFTLAVNIIAKK+V ++ S E+ S E
Sbjct: 251 VISPLLDIYFPEGSGIQIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEP 310
Query: 995 TFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCRL 1174
F+YY+NDGVYGSF L + + P + K+ K DE ++SS+WGP+CD LD+IVE C L
Sbjct: 311 AFVYYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDEPLFTSSLWGPSCDELDQIVESCLL 370
Query: 1175 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQ 1312
PE++VGDW++F+NMGA + S FN FQRPAIY++MS W MQ
Sbjct: 371 PELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYFMMSFSDWYEMQ 416
>ref|NP_001030044.1| ornithine decarboxylase-like [Mus musculus].
Length = 425
Score = 372 bits (956), Expect = e-103
Identities = 193/408 (47%), Positives = 268/408 (65%), Gaps = 1/408 (0%)
Frame = +2
Query: 98 LDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDS 277
L G +A ++ +KI E+S + +DAF VADL ++ +H +L+ALPRV PFYAVKCN +
Sbjct: 26 LGPGASAWQLVLKKIKELSISGRQDAFMVADLDVLVSRHRTFLQALPRVQPFYAVKCNSN 85
Query: 278 RTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTF 457
++ LAA+GTGFDCAS+ E++ V LGV P RII+ANPCK VS I++AA GVQ++TF
Sbjct: 86 PWVLLVLAALGTGFDCASQGELEQVLGLGVAPSRIIFANPCKAVSHIQFAARCGVQLLTF 145
Query: 458 DSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDIDVIG 637
D+E EL+K+AR HP+A+LVLRI T DS++ L KFGA L+ LL+ AR+L + V+G
Sbjct: 146 DNEEELIKLARYHPRARLVLRIQTLDSQSTFPLHTKFGAHLEACGHLLQVARELGLAVVG 205
Query: 638 VSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITG 817
SFHVGS C PE++ QAI+D VF+MG + G M LLD+GGGFPG + + KFEE+
Sbjct: 206 ASFHVGSDCHTPESYRQAIADCHRVFEMGCKAGHHMSLLDLGGGFPGVKGSEAKFEEVAR 265
Query: 818 VINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEEASEQT 997
VIN AL +YFP ++G+ +IAEPGR+Y S T AVNII KK L + +
Sbjct: 266 VINTALAQYFPEETGIEVIAEPGRFYAGSVCTAAVNIIVKKSSL---------DPGGHRK 316
Query: 998 FMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVE-RCRL 1174
YY+N+G YG F L D P++ K + + +++GPTCD DR+ +L
Sbjct: 317 LAYYLNEGHYGVFRLFLRDPVPRIPIVVKEFPSEPPLFPCTLYGPTCDAYDRLFSTEVQL 376
Query: 1175 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI 1318
PE+ VGDW++F +MGAY+ + +STFNGF +Y MS L++ +
Sbjct: 377 PELDVGDWLIFPDMGAYSSSMSSTFNGFPIATVYDAMSPQLRSLLETV 424
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,985,847
Number of extensions: 1750633
Number of successful extensions: 5986
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5962
Number of HSP's successfully gapped: 5
Length of query: 597
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 490
Effective length of database: 12,403,707
Effective search space: 6077816430
Effective search space used: 6077816430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008854
(1793 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002530.1| ornithine decarboxylase [Homo sapiens]. 880 0.0
Alignment gi|NP_443724.1| arginine decarboxylase [Homo sapiens]. 465 e-131
Alignment gi|NP_680479.1| antizyme inhibitor 1 [Homo sapiens]. 445 e-125
Alignment gi|NP_056962.2| antizyme inhibitor 1 [Homo sapiens]. 445 e-125
>ref|NP_002530.1| ornithine decarboxylase [Homo sapiens].
Length = 461
Score = 880 bits (2273), Expect = 0.0
Identities = 428/461 (92%), Positives = 444/461 (96%)
Frame = +2
Query: 59 MNSFSNEELDCHFLDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALP 238
MN+F NEE DCHFLDEGFTAKDILDQKINEVS++DDKDAFYVADLGDILKKHLRWLKALP
Sbjct: 1 MNNFGNEEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP 60
Query: 239 RVTPFYAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 418
RVTPFYAVKCNDS+ IV+TLAA GTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI
Sbjct: 61 RVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQI 120
Query: 419 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 598
KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATL+TSRLL
Sbjct: 121 KYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLRTSRLL 180
Query: 599 LERARDLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 778
LERA++L+IDV+GVSFHVGSGCTDPETF QAISDARCVFDMGAEVGFSMYLLDIGGGFPG
Sbjct: 181 LERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPG 240
Query: 779 SEDVKLKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQ 958
SEDVKLKFEEITGVINPALDKYFP DSGVRIIAEPGRYYVASAFTLAVNIIAKK+VLKEQ
Sbjct: 241 SEDVKLKFEEITGVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQ 300
Query: 959 TGSDDEEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTC 1138
TGSDDE+E+SEQTFMYYVNDGVYGSFNCILYDHAHV+PLLQKRPKPDEKYYSSSIWGPTC
Sbjct: 301 TGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTC 360
Query: 1139 DGLDRIVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQI 1318
DGLDRIVERC LPEMHVGDWMLFENMGAYTVAAASTFNGFQRP IYYVMSGP WQLMQQ
Sbjct: 361 DGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQF 420
Query: 1319 RNHDFPPEVGEQDVGPLPVSCAWESGMERHPAACASARINV 1441
+N DFPPEV EQD LPVSCAWESGM+RH AACASA INV
Sbjct: 421 QNPDFPPEVEEQDASTLPVSCAWESGMKRHRAACASASINV 461
>ref|NP_443724.1| arginine decarboxylase [Homo sapiens].
Length = 460
Score = 465 bits (1197), Expect = e-131
Identities = 228/441 (51%), Positives = 316/441 (71%), Gaps = 4/441 (0%)
Frame = +2
Query: 80 ELDCHFLDEGFTAKDILDQKINEVS--ATDDKDAFYVADLGDILKKHLRWLKALPRVTPF 253
E D ++EGF+ +D+L + S TD+ AF+VADLG I++KH +LK LPRV PF
Sbjct: 7 ESDFVMVEEGFSTRDLLKELTLGASQATTDEVAAFFVADLGAIVRKHFCFLKCLPRVRPF 66
Query: 254 YAVKCNDSRTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAAN 433
YAVKCN S +++ LA +G GF CA+K E++LVQ +G+P +II ANPCKQ++QIKYAA
Sbjct: 67 YAVKCNSSPGVLKVLAQLGLGFSCANKAEMELVQHIGIPASKIICANPCKQIAQIKYAAK 126
Query: 434 NGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAR 613
+G+Q+++FD+E+EL KV ++HP AK+VL IATDDS ++ LS+KFG +LK+ R LLE A+
Sbjct: 127 HGIQLLSFDNEMELAKVVKSHPSAKMVLCIATDDSHSLSCLSLKFGVSLKSCRHLLENAK 186
Query: 614 DLDIDVIGVSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVK 793
++V+GVSFH+GSGC DP+ +AQ+I+DAR VF+MG E+G M++LD+GGGFPG+E K
Sbjct: 187 KHHVEVVGVSFHIGSGCPDPQAYAQSIADARLVFEMGTELGHKMHVLDLGGGFPGTEGAK 246
Query: 794 LKFEEITGVINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDD 973
++FEEI VIN ALD YFP GV I AE GRYYV SAFT+AV+IIAKK VL +Q G ++
Sbjct: 247 VRFEEIASVINSALDLYFPEGCGVDIFAELGRYYVTSAFTVAVSIIAKKEVLLDQPGREE 306
Query: 974 EEEASEQTFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDR 1153
E ++ +T +Y++++GVYG FN +L+D+ P+LQK+P ++ YSSS+WGP DG D
Sbjct: 307 ENGSTSKTIVYHLDEGVYGIFNSVLFDNICPTPILQKKPSTEQPLYSSSLWGPAVDGCDC 366
Query: 1154 IVERCRLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQQIRNHDF 1333
+ E LP++HVGDW++F+NMGAYTV S F G Q I Y MS W+ +++
Sbjct: 367 VAEGLWLPQLHVGDWLVFDNMGAYTVGMGSPFWGTQACHITYAMSRVAWEALRR----QL 422
Query: 1334 PPEVGEQDVGPL--PVSCAWE 1390
E DV + P+SC WE
Sbjct: 423 MAAEQEDDVEGVCKPLSCGWE 443
>ref|NP_680479.1| antizyme inhibitor 1 [Homo sapiens].
Length = 448
Score = 445 bits (1144), Expect = e-125
Identities = 222/406 (54%), Positives = 292/406 (71%), Gaps = 1/406 (0%)
Frame = +2
Query: 98 LDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDS 277
LDEG +++D + E + T K+AF+V DLG I+KKH +W + ++ PFY VKCN +
Sbjct: 15 LDEGTNLGNVIDNYVYEHTLTG-KNAFFVGDLGKIVKKHSQWQNVVAQIKPFYTVKCNSA 73
Query: 278 RTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTF 457
+++ LAA+GTGF C+SK E+ LVQ LGVPPE IIY +PCKQVSQIKYAA GV ++T
Sbjct: 74 PAVLEILAALGTGFACSSKNEMALVQELGVPPENIIYISPCKQVSQIKYAAKVGVNILTC 133
Query: 458 DSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDIDVIG 637
D+E+EL K+AR HP AK++L IAT+D+ ++KFG TLK R LLE A++LD+ +IG
Sbjct: 134 DNEIELKKIARNHPNAKVLLHIATEDNIGGEEGNMKFGTTLKNCRHLLECAKELDVQIIG 193
Query: 638 VSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITG 817
V FHV S C + + + A+SDARCVFDM E+GF+M +LDIGGGF G+E + EE+
Sbjct: 194 VKFHVSSACKESQVYVHALSDARCVFDMAGEIGFTMNMLDIGGGFTGTE---FQLEEVNH 250
Query: 818 VINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEEAS-EQ 994
VI+P LD YFP SGV+II+EPG YYV+SAFTLAVNIIAKK+V ++ S E+ S E
Sbjct: 251 VISPLLDIYFPEGSGVKIISEPGSYYVSSAFTLAVNIIAKKVVENDKFPSGVEKTGSDEP 310
Query: 995 TFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCRL 1174
FMYY+NDGVYGSF L + + P + K+ K DE ++SS+WGP+CD LD+IVE C L
Sbjct: 311 AFMYYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDEPLFTSSLWGPSCDELDQIVESCLL 370
Query: 1175 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQ 1312
PE++VGDW++F+NMGA + S FN FQRPAIYY+MS W MQ
Sbjct: 371 PELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYYMMSFSDWYEMQ 416
>ref|NP_056962.2| antizyme inhibitor 1 [Homo sapiens].
Length = 448
Score = 445 bits (1144), Expect = e-125
Identities = 222/406 (54%), Positives = 292/406 (71%), Gaps = 1/406 (0%)
Frame = +2
Query: 98 LDEGFTAKDILDQKINEVSATDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDS 277
LDEG +++D + E + T K+AF+V DLG I+KKH +W + ++ PFY VKCN +
Sbjct: 15 LDEGTNLGNVIDNYVYEHTLTG-KNAFFVGDLGKIVKKHSQWQNVVAQIKPFYTVKCNSA 73
Query: 278 RTIVQTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTF 457
+++ LAA+GTGF C+SK E+ LVQ LGVPPE IIY +PCKQVSQIKYAA GV ++T
Sbjct: 74 PAVLEILAALGTGFACSSKNEMALVQELGVPPENIIYISPCKQVSQIKYAAKVGVNILTC 133
Query: 458 DSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERARDLDIDVIG 637
D+E+EL K+AR HP AK++L IAT+D+ ++KFG TLK R LLE A++LD+ +IG
Sbjct: 134 DNEIELKKIARNHPNAKVLLHIATEDNIGGEEGNMKFGTTLKNCRHLLECAKELDVQIIG 193
Query: 638 VSFHVGSGCTDPETFAQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITG 817
V FHV S C + + + A+SDARCVFDM E+GF+M +LDIGGGF G+E + EE+
Sbjct: 194 VKFHVSSACKESQVYVHALSDARCVFDMAGEIGFTMNMLDIGGGFTGTE---FQLEEVNH 250
Query: 818 VINPALDKYFPPDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEEAS-EQ 994
VI+P LD YFP SGV+II+EPG YYV+SAFTLAVNIIAKK+V ++ S E+ S E
Sbjct: 251 VISPLLDIYFPEGSGVKIISEPGSYYVSSAFTLAVNIIAKKVVENDKFPSGVEKTGSDEP 310
Query: 995 TFMYYVNDGVYGSFNCILYDHAHVQPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCRL 1174
FMYY+NDGVYGSF L + + P + K+ K DE ++SS+WGP+CD LD+IVE C L
Sbjct: 311 AFMYYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDEPLFTSSLWGPSCDELDQIVESCLL 370
Query: 1175 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPAIYYVMSGPTWQLMQ 1312
PE++VGDW++F+NMGA + S FN FQRPAIYY+MS W MQ
Sbjct: 371 PELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYYMMSFSDWYEMQ 416
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 74,008,637
Number of extensions: 2068591
Number of successful extensions: 6586
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6572
Number of HSP's successfully gapped: 4
Length of query: 597
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 489
Effective length of database: 14,737,052
Effective search space: 7206418428
Effective search space used: 7206418428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008854
(1793 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894404.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 890 0.0
Sscrofa_Chr13 505 e-140
gb|GL896234.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 163 4e-37
Sscrofa_Chr02 163 4e-37
Sscrofa_ChrX 153 4e-34
Sscrofa_Chr04 109 5e-21
Sscrofa_Chr05 60 4e-06
>gb|GL894404.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3072
Length = 18524
Score = 890 bits (449), Expect = 0.0
Identities = 449/449 (100%)
Strand = Plus / Minus
Query: 1299 ggcaactgatgcagcagatccggaaccacgacttccccccggaggtgggggagcaggatg 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7479 ggcaactgatgcagcagatccggaaccacgacttccccccggaggtgggggagcaggatg 7420
Query: 1359 tcggccctttgcccgtgtcgtgtgcttgggagagcggcatggagcgtcacccggcagcct 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7419 tcggccctttgcccgtgtcgtgtgcttgggagagcggcatggagcgtcacccggcagcct 7360
Query: 1419 gtgcttcggcgcgcatcaatgtgtagacaccactcttgtagcacctgttcactgcgagtt 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7359 gtgcttcggcgcgcatcaatgtgtagacaccactcttgtagcacctgttcactgcgagtt 7300
Query: 1479 tagcttgaataagggtttggggggaccgtttaacttaatcaccgctagttgggagacgtc 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7299 tagcttgaataagggtttggggggaccgtttaacttaatcaccgctagttgggagacgtc 7240
Query: 1539 tatgagtaggctggcacagatgcagcaatgtgggagacaaggagatgggtcacacttatc 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239 tatgagtaggctggcacagatgcagcaatgtgggagacaaggagatgggtcacacttatc 7180
Query: 1599 tgtgttcctatggaaactatttgaatatttgttttatatggatttttattcaccttgcaa 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7179 tgtgttcctatggaaactatttgaatatttgttttatatggatttttattcaccttgcaa 7120
Query: 1659 ccatgctactagagtgcccttcacctgccgagcaagcgtttgtagcttgtgcgttggcag 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7119 ccatgctactagagtgcccttcacctgccgagcaagcgtttgtagcttgtgcgttggcag 7060
Query: 1719 gatgggccggaagctcagtgctgtgacct 1747
|||||||||||||||||||||||||||||
Sbjct: 7059 gatgggccggaagctcagtgctgtgacct 7031
Score = 432 bits (218), Expect = e-118
Identities = 218/218 (100%)
Strand = Plus / Minus
Query: 1083 agagacccaaaccggatgagaagtactactcatccagcatctggggaccgacctgtgacg 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9358 agagacccaaaccggatgagaagtactactcatccagcatctggggaccgacctgtgacg 9299
Query: 1143 gcctggatcgcattgtcgagcgctgtcgtttgcccgagatgcatgtcggcgattggatgc 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9298 gcctggatcgcattgtcgagcgctgtcgtttgcccgagatgcatgtcggcgattggatgc 9239
Query: 1203 tctttgaaaacatgggtgcttacacggtggctgctgcttccacgttcaatggattccaga 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9238 tctttgaaaacatgggtgcttacacggtggctgctgcttccacgttcaatggattccaga 9179
Query: 1263 ggccagccatctactatgtgatgtcggggcccacgtgg 1300
||||||||||||||||||||||||||||||||||||||
Sbjct: 9178 ggccagccatctactatgtgatgtcggggcccacgtgg 9141
Score = 351 bits (177), Expect = 8e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 333 agactgaaatacaactggtgcagagtctcggggtgcctccagagaggattatctatgcaa 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11944 agactgaaatacaactggtgcagagtctcggggtgcctccagagaggattatctatgcaa 11885
Query: 393 atccttgtaaacaagtgtctcagattaagtatgccgccaataatggagtccagatgatga 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11884 atccttgtaaacaagtgtctcagattaagtatgccgccaataatggagtccagatgatga 11825
Query: 453 cctttgacagtgaagtggagctgatgaaagtcgccagggcgcatcccaaggccaagt 509
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11824 cctttgacagtgaagtggagctgatgaaagtcgccagggcgcatcccaaggccaagt 11768
Score = 345 bits (174), Expect = 5e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 161 gatgataaggatgccttctacgtggcggacctgggagacattctaaagaagcacctgaga 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12311 gatgataaggatgccttctacgtggcggacctgggagacattctaaagaagcacctgaga 12252
Query: 221 tggctcaaagcgcttcctcgggtcacccccttttatgcggtcaaatgcaacgatagcaga 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12251 tggctcaaagcgcttcctcgggtcacccccttttatgcggtcaaatgcaacgatagcaga 12192
Query: 281 accatagtgcagaccctcgctgccatcgggacaggatttgactgtgccagcaag 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12191 accatagtgcagaccctcgctgccatcgggacaggatttgactgtgccagcaag 12138
Score = 327 bits (165), Expect = 1e-86
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 807 agatcaccggtgtcatcaacccagcgttggacaagtattttcccccagactccggagtga 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9797 agatcaccggtgtcatcaacccagcgttggacaagtattttcccccagactccggagtga 9738
Query: 867 gaatcatagcggagccaggcagatactatgttgcatcagccttcacgcttgcagttaaca 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9737 gaatcatagcggagccaggcagatactatgttgcatcagccttcacgcttgcagttaaca 9678
Query: 927 tcattgccaaaaaactcgtgttaaaggaacaaacaggctctgacg 971
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9677 tcattgccaaaaaactcgtgttaaaggaacaaacaggctctgacg 9633
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 508 gttggttttgcgcatcgccactgatgattccaaagcagtctgtcgcctcagtgtcaaatt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11513 gttggttttgcgcatcgccactgatgattccaaagcagtctgtcgcctcagtgtcaaatt 11454
Query: 568 tggtgccacactcaaaaccagcaggctgcttttggagcgggcgagggatcttgatattga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11453 tggtgccacactcaaaaccagcaggctgcttttggagcgggcgagggatcttgatattga 11394
Query: 628 tgtcattggtgtcag 642
|||||||||||||||
Sbjct: 11393 tgtcattggtgtcag 11379
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 971 gacgaggaggaggccagtgagcagacgttcatgtattacgtgaacgacggcgtgtacggc 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9550 gacgaggaggaggccagtgagcagacgttcatgtattacgtgaacgacggcgtgtacggc 9491
Query: 1031 tccttcaactgcatcctgtacgaccacgcccatgtgcagccgctcctgcagaag 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9490 tccttcaactgcatcctgtacgaccacgcccatgtgcagccgctcctgcagaag 9437
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 640 cagcttccacgtgggaagtggctgtactgatcccgagaccttcgcacaggccatctctga 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11261 cagcttccacgtgggaagtggctgtactgatcccgagaccttcgcacaggccatctctga 11202
Query: 700 tgcccgctgtgtcttcgacatgggcg 725
||||||||||||||||||||||||||
Sbjct: 11201 tgcccgctgtgtcttcgacatgggcg 11176
Score = 167 bits (84), Expect = 3e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 725 gctgaggtcggtttcagcatgtatctgcttgatatcggtggtggatttcctggatctgag 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10996 gctgaggtcggtttcagcatgtatctgcttgatatcggtggtggatttcctggatctgag 10937
Query: 785 gatgtaaagcttaagttcgaagag 808
||||||||||||||||||||||||
Sbjct: 10936 gatgtaaagcttaagttcgaagag 10913
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 106 aggctttactgccaaggacatcctggaccaaaaaattaatgaagtgtctgccactg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12723 aggctttactgccaaggacatcctggaccaaaaaattaatgaagtgtctgccactg 12668
>Sscrofa_Chr13
|| Length = 218635234
Score = 505 bits (255), Expect = e-140
Identities = 589/691 (85%), Gaps = 12/691 (1%)
Strand = Plus / Minus
Query: 1063 tgtgcagccgctcctgcagaagagacccaaaccggatgagaagtactactcatccagcat 1122
||||||||| |||||||| |||||||||||||| ||||||||| | || |||||||||||
Sbjct: 217536911 tgtgcagcccctcctgca-aagagacccaaaccagatgagaagaattattcatccagcat 217536853
Query: 1123 ctggggaccgacctgtgacggcctggatcgcattgtcgagcgctgtcgtttgcccgagat 1182
|||||||||||||||||| ||||||| | ||||||| ||||||||| |||| |||||
Sbjct: 217536852 ctggggaccgacctgtgatggcctggctggcattgttgagcgctgtaacgtgcctgagat 217536793
Query: 1183 gcatgtcggcgattggatgctctttgaaaacatgggtgcttacacggtggctgctgcttc 1242
|| || |||||||||||||||||||||||||| ||| |||||||| |||| |||||||||
Sbjct: 217536792 gcgtgccggcgattggatgctctttgaaaacacgggcgcttacacagtggttgctgcttc 217536733
Query: 1243 cacgttcaatggattccagaggccagccatctactatgtgatgtcggggcccacgtggca 1302
||| | |||||||||||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct: 217536732 cacttgcaatggattccagaggccgaccatctacaatgtgaagtcggggcccacgtggca 217536673
Query: 1303 actgatgcagcagatccggaaccacgacttccccccggaggtgggggagcaggatgtcgg 1362
||||| || ||||||| | |||||||| ||||||||||||||| ||||||||||| ||
Sbjct: 217536672 actgacgcggcagatctaggaccacgacgtccccccggaggtggaggagcaggatgctgg 217536613
Query: 1363 ccctttgcccgtgtcgtgtgcttgggagagcggcatggagcgtcacccggcagcctgtgc 1422
||||||||||||||| |||||| | | |||||| ||||||||||||||||||||| | ||
Sbjct: 217536612 ccctttgcccgtgtcttgtgctcgcgggagcgggatggagcgtcacccggcagccggggc 217536553
Query: 1423 ttcggcgcgcatcaatgtgtagacaccactcttgtagcacctgttcactgcgagtttagc 1482
||| ||||| |||| ||||| ||||| ||||| ||| ||| |||||||||||| |||
Sbjct: 217536552 ttcagcgcgtatcatcgtgtaaacaccgctctt---gcagctgctcactgcgagttcagc 217536496
Query: 1483 ttgaa-taagggtttggggggaccgtttaacttaatcaccgctagttgggagacgtctat 1541
||||| ||||||||||||||||| | || |||||| | || | ||||| ||||||
Sbjct: 217536495 ttgaattaagggtttggggggactgctttccttaattcctgccaagtggga-ctgtctat 217536437
Query: 1542 --gagtaggctggcacagatgcagc--aatgtgggagacaaggagat-gggtcacactta 1596
||| || ||||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct: 217536436 gcgagagggttggcacagatgcagcaaaatgtgggagacgaggagatggggtcacaccag 217536377
Query: 1597 tctgtgttcctatggaaactatttgaatatttgttttatatggatttttattcaccttgc 1656
|||| | |||| |||||||||| |||||||| ||||||| || |||| |||||| ||||
Sbjct: 217536376 tctgcgctcctgtggaaactatctgaatattcgttttatgcgggttttaattcactttgc 217536317
Query: 1657 aaccatgctactagagtgcccttcacctgccgagcaagcgtttgtagcttgtgcgttggc 1716
||| |||||||| ||| |||| || ||||| ||||||| ||||||||| |||| ||||||
Sbjct: 217536316 aacgatgctact-gagggcccctcgcctgcagagcaagggtttgtagcctgtgtgttggc 217536258
Query: 1717 aggatgggccggaagctcagtgctgtgacct 1747
||||||| || ||||||||||||||||||||
Sbjct: 217536257 aggatggcccagaagctcagtgctgtgacct 217536227
>gb|GL896234.1| Sus scrofa unplaced genomic scaffold chrU_scaffold595
Length = 47932
Score = 163 bits (82), Expect = 4e-37
Identities = 122/134 (91%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 1603 ttcctatggaaactatttgaatatttgttttatatggatttttattcaccttgcaaccat 1662
||||||||||||||| |||| |||| |||||||||||||||||||||| |||||| |||
Sbjct: 7546 ttcctatggaaactagctgaacattt-ttttatatggatttttattcactttgcaaacat 7604
Query: 1663 gctactagagtgcccttcacctgccgagcaagcgtttgtagcttgtgcgttggcaggatg 1722
||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||
Sbjct: 7605 gctactagagtgcccctcacctgctgagcaagcatttgtagctcttgcgttggcaggatg 7664
Query: 1723 ggccggaagctcag 1736
||| ||||||||||
Sbjct: 7665 ggctggaagctcag 7678
>Sscrofa_Chr02
|| Length = 162569375
Score = 163 bits (82), Expect = 4e-37
Identities = 122/134 (91%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 1603 ttcctatggaaactatttgaatatttgttttatatggatttttattcaccttgcaaccat 1662
||||||||||||||| |||| |||| |||||||||||||||||||||| |||||| |||
Sbjct: 67443804 ttcctatggaaactagctgaacattt-ttttatatggatttttattcactttgcaaacat 67443746
Query: 1663 gctactagagtgcccttcacctgccgagcaagcgtttgtagcttgtgcgttggcaggatg 1722
||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||
Sbjct: 67443745 gctactagagtgcccctcacctgctgagcaagcatttgtagctcttgcgttggcaggatg 67443686
Query: 1723 ggccggaagctcag 1736
||| ||||||||||
Sbjct: 67443685 ggctggaagctcag 67443672
Score = 83.8 bits (42), Expect = 3e-13
Identities = 104/121 (85%), Gaps = 4/121 (3%)
Strand = Plus / Minus
Query: 1460 cacctgttcactgcgagtttagcttgaat-aagggtttggggggaccgtttaacttaatc 1518
|||| ||| |||| |||||||| |||||| ||||||||||||||| |||||| ||||||
Sbjct: 67443929 caccagttaactgtgagtttagtttgaattaagggtttggggggaacgtttaccttaatt 67443870
Query: 1519 accgctagttgggagacgtcta--tgagta-ggctggcacagatgcagcaatgtgggaga 1575
|| | ||||||||| | ||||| |||||| || |||||||||||||| |||||||||||
Sbjct: 67443869 actgttagttgggacatgtctatgtgagtagggttggcacagatgcagtaatgtgggaga 67443810
Query: 1576 c 1576
|
Sbjct: 67443809 c 67443809
>Sscrofa_ChrX
|| Length = 144288218
Score = 153 bits (77), Expect = 4e-34
Identities = 178/208 (85%), Gaps = 4/208 (1%)
Strand = Plus / Minus
Query: 1497 ggggggaccgtttaacttaatcaccgctagttgggagacgtctatg--agtaggct-ggc 1553
||||||| | ||||||||||| || ||| ||| ||||| ||||||| |||||| | |||
Sbjct: 72459038 ggggggagcatttaacttaattactgctggtttggagatgtctatgtgagtaggattggc 72458979
Query: 1554 acagatgcagcaatgtgggagacaaggagatggg-tcacacttatctgtgttcctatgga 1612
||||||||| || ||||||||| |||||||||| | ||||| || ||||| | ||||||
Sbjct: 72458978 acagatgcaacattgtgggagattaggagatgggcttacactaatttgtgtccttatgga 72458919
Query: 1613 aactatttgaatatttgttttatatggatttttattcaccttgcaaccatgctactagag 1672
|||||||||||||| |||||||||||||||||||||||| || | | |||||||||||||
Sbjct: 72458918 aactatttgaatatctgttttatatggatttttattcacttttctaacatgctactagag 72458859
Query: 1673 tgcccttcacctgccgagcaagcgtttg 1700
||||| ||| |||| ||||||| |||||
Sbjct: 72458858 tgcccctcaactgctgagcaagagtttg 72458831
>Sscrofa_Chr04
|| Length = 143465943
Score = 109 bits (55), Expect = 5e-21
Identities = 329/418 (78%), Gaps = 3/418 (0%)
Strand = Plus / Plus
Query: 188 gacctgggagacattctaaagaagcacctgagatggctcaaagcgcttcctcgggtcacc 247
||||||||||| ||||| ||||| || ||||||||| | ||| ||||||| ||||| |
Sbjct: 54519626 gacctgggagatattctgaagaaacatctgagatggttaaaaagtcttcctctggtcatc 54519685
Query: 248 cccttttatgcggtcaaatgcaacgatagcagaaccatagtgcagaccctcgctgccatc 307
|||||| |||| ||||||||||| || |||||||||||||| | | | |||||||||
Sbjct: 54519686 ccctttaatgcagtcaaatgcaatgaatgcagaaccatagtgaaaaatttagctgccatc 54519745
Query: 308 gggacaggatttgactgtgccagcaagactgaaatacaactggtgcagagtctcggggtg 367
| |||| |||||| ||||||||| |||||||| |||| ||||||||||| ||| | ||
Sbjct: 54519746 agaacagaatttgatcgtgccagcatgactgaaaaacaattggtgcagagtgtcgagatg 54519805
Query: 368 cctccagagaggattatctatgcaaatccttgtaaacaa--gtgtctcagattaagtatg 425
|||||| |||| | |||| || |||| ||| | |||| || |||| |||||
Sbjct: 54519806 tctccagggaggtacctgtatg-aattcctataaaaagattgtgtagcaaattaggtatg 54519864
Query: 426 ccgccaataatggagtccagatgatgacctttgacagtgaagtggagctgatgaaagtcg 485
| | |||||||| ||| ||||| ||||| ||||| |||||||| || |||||| |||
Sbjct: 54519865 ctgtcaataatgtagttcagattatgacttttgatagtgaagtcaagttgatgacagttt 54519924
Query: 486 ccagggcgcatcccaaggccaagttggttttgcgcatcgccactgatgattccaaagcag 545
||||| ||| | |||| |||||||||||| | || || ||| |||||||||||||
Sbjct: 54519925 tcagggaacattcaaaggtaaagttggttttgtggattgcaactagtgattccaaagcaa 54519984
Query: 546 tctgtcgcctcagtgtcaaatttggtgccacactcaaaaccagcaggctgcttttgga 603
|||||| || ||||| |||||||| |||||||||| || |||||||| ||||||||
Sbjct: 54519985 tctgtctccacagtgctaaatttggcaccacactcaagactagcaggcttcttttgga 54520042
>Sscrofa_Chr05
|| Length = 111506441
Score = 60.0 bits (30), Expect = 4e-06
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 1178 gagatgcatgtcggcgattggatgctctttgaaaacatgggtgcttacacggtggctgct 1237
|||| |||||| ||| ||||||||||||||| |||| |||||||| |||| | ||||||
Sbjct: 581813 gagaggcatgtgggccattggatgctctttggaaacgtgggtgctcacaccgctgctgct 581754
Query: 1238 gcttcc 1243
||||||
Sbjct: 581753 gcttcc 581748
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,273,343
Number of extensions: 267
Number of successful extensions: 267
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 19
Length of query: 1793
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1771
Effective length of database: 2,808,408,574
Effective search space: 4973691584554
Effective search space used: 4973691584554
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)