Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008856
(1071 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160085.1| 2-oxoglutarate and iron-dependent oxygenase ... 553 e-165
>ref|NP_001160085.1| 2-oxoglutarate and iron-dependent oxygenase domain-containing
protein 1 [Bos taurus].
Length = 542
Score = 553 bits (1425), Expect(2) = e-165
Identities = 265/284 (93%), Positives = 273/284 (96%)
Frame = +2
Query: 104 MNGKRSTELGPGRAGKKVKKEVMANISDAVTEETLKKQVAEAWSRRTPFRHEAIVMDMDP 283
MNGKR E G RAGKKVKKEVMA SDAVTEETLKKQVAEAWSRRTPFRHEAIVMDMDP
Sbjct: 1 MNGKRPAEPGSDRAGKKVKKEVMAKFSDAVTEETLKKQVAEAWSRRTPFRHEAIVMDMDP 60
Query: 284 FLHCVIPNFIQSQSFLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALRKILF 463
FLHCVIPNFIQSQ+FLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALRKILF
Sbjct: 61 FLHCVIPNFIQSQNFLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALRKILF 120
Query: 464 EHFRAWLSDISKIDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWDRSLGG 643
EHFR+W+SDISKIDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWD SLGG
Sbjct: 121 EHFRSWISDISKIDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWDASLGG 180
Query: 644 TLDMYSVDEHFQPKQIVKSLIPSWNTLVFFEVSPISFHQVSEVLSEEKSRLSISGWFHGP 823
TLD++SVDEHFQPKQIVKSLIPSWNTLVFFEVSP+SFHQVSEVLSEEKSRLSISGWFHGP
Sbjct: 181 TLDLFSVDEHFQPKQIVKSLIPSWNTLVFFEVSPVSFHQVSEVLSEEKSRLSISGWFHGP 240
Query: 824 SLTRPPTYFEPLLPRSPHIPQDHEVLCDWINPTYLDMEYQGQIQ 955
SLTRPPTYFEPL+ RSPHIPQDHE+L DWINPTYLDMEYQ QIQ
Sbjct: 241 SLTRPPTYFEPLIARSPHIPQDHEILYDWINPTYLDMEYQAQIQ 284
Score = 49.7 bits (117), Expect(2) = e-165
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +1
Query: 988 KEFLKPEKFAEVCEAFGKGNVEWTTQGP 1071
KEFL+PEKFAEVCEA +G VEW+++GP
Sbjct: 296 KEFLQPEKFAEVCEALERGRVEWSSRGP 323
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,865,950
Number of extensions: 1084909
Number of successful extensions: 3153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3145
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 254
Effective length of database: 14,273,310
Effective search space: 3625420740
Effective search space used: 3625420740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008856
(1071 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535297.2| PREDICTED: similar to CG31120-PA, isoform A iso... 546 e-164
Alignment gi|XP_863140.1| PREDICTED: similar to CG31120-PA, isoform A iso... 51 2e-06
>ref|XP_535297.2| PREDICTED: similar to CG31120-PA, isoform A isoform 1 [Canis
familiaris].
Length = 545
Score = 546 bits (1407), Expect(2) = e-164
Identities = 260/284 (91%), Positives = 271/284 (95%)
Frame = +2
Query: 104 MNGKRSTELGPGRAGKKVKKEVMANISDAVTEETLKKQVAEAWSRRTPFRHEAIVMDMDP 283
MNGKR E PGRAGKK KKEV+A SDAVTEETLKKQV+EAWSRRTPFRHEAIVMDMDP
Sbjct: 1 MNGKRPAEPSPGRAGKKGKKEVIAEFSDAVTEETLKKQVSEAWSRRTPFRHEAIVMDMDP 60
Query: 284 FLHCVIPNFIQSQSFLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALRKILF 463
FLHCVIPNFIQSQ+FLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALRK+LF
Sbjct: 61 FLHCVIPNFIQSQNFLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALRKVLF 120
Query: 464 EHFRAWLSDISKIDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWDRSLGG 643
E FR WL+DIS+IDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWDRSLGG
Sbjct: 121 EDFRTWLADISQIDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWDRSLGG 180
Query: 644 TLDMYSVDEHFQPKQIVKSLIPSWNTLVFFEVSPISFHQVSEVLSEEKSRLSISGWFHGP 823
TLD+Y VDEHFQPKQIVKSLIPSWNTLVFFEVSP+SFHQVSEVLSEEKSRLSISGWFHGP
Sbjct: 181 TLDLYDVDEHFQPKQIVKSLIPSWNTLVFFEVSPVSFHQVSEVLSEEKSRLSISGWFHGP 240
Query: 824 SLTRPPTYFEPLLPRSPHIPQDHEVLCDWINPTYLDMEYQGQIQ 955
SLTRPP YFEPL+PRSPHIPQDHE+L DWINPTYLDM+YQ QIQ
Sbjct: 241 SLTRPPNYFEPLIPRSPHIPQDHEILYDWINPTYLDMDYQVQIQ 284
Score = 51.2 bits (121), Expect(2) = e-164
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = +1
Query: 988 KEFLKPEKFAEVCEAFGKGNVEWTTQGP 1071
KEFLKPEKFAEVCEA KG+V+W+++GP
Sbjct: 296 KEFLKPEKFAEVCEALEKGDVKWSSRGP 323
>ref|XP_863140.1| PREDICTED: similar to CG31120-PA, isoform A isoform 2 [Canis
familiaris].
Length = 269
Score = 51.2 bits (121), Expect = 2e-06
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = +1
Query: 988 KEFLKPEKFAEVCEAFGKGNVEWTTQGP 1071
KEFLKPEKFAEVCEA KG+V+W+++GP
Sbjct: 20 KEFLKPEKFAEVCEALEKGDVKWSSRGP 47
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,749,455
Number of extensions: 1122797
Number of successful extensions: 3148
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3145
Number of HSP's successfully gapped: 3
Length of query: 357
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 253
Effective length of database: 15,407,560
Effective search space: 3898112680
Effective search space used: 3898112680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008856
(1071 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361072.1| PREDICTED: LOW QUALITY PROTEIN: 2-oxoglutara... 564 e-171
>ref|XP_003361072.1| PREDICTED: LOW QUALITY PROTEIN: 2-oxoglutarate and iron-dependent
oxygenase domain-containing protein 1-like [Sus scrofa].
Length = 550
Score = 564 bits (1453), Expect(2) = e-171
Identities = 277/288 (96%), Positives = 278/288 (96%), Gaps = 4/288 (1%)
Frame = +2
Query: 104 MNGKRSTELGPGRAGKKVKKEVMANISDAVTEETLKKQVAEAWSRRTPFRH----EAIVM 271
MNGKRSTELGPGRAGKKVKKEVMANISDAVTEETLKKQVAEAWSR+ EAIVM
Sbjct: 1 MNGKRSTELGPGRAGKKVKKEVMANISDAVTEETLKKQVAEAWSRKAIHNAFLPTEAIVM 60
Query: 272 DMDPFLHCVIPNFIQSQSFLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALR 451
DMDPFLHCVIPNFIQSQSFLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALR
Sbjct: 61 DMDPFLHCVIPNFIQSQSFLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALR 120
Query: 452 KILFEHFRAWLSDISKIDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWDR 631
KILFEHFRAWLSDISKIDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWDR
Sbjct: 121 KILFEHFRAWLSDISKIDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWDR 180
Query: 632 SLGGTLDMYSVDEHFQPKQIVKSLIPSWNTLVFFEVSPISFHQVSEVLSEEKSRLSISGW 811
SLGGTLDMYSVDEHFQPKQIVKSLIPSWNTLVFFEVSPISFHQVSEVLSEEKSRLSISGW
Sbjct: 181 SLGGTLDMYSVDEHFQPKQIVKSLIPSWNTLVFFEVSPISFHQVSEVLSEEKSRLSISGW 240
Query: 812 FHGPSLTRPPTYFEPLLPRSPHIPQDHEVLCDWINPTYLDMEYQGQIQ 955
FHGPSLTRPPTYFEPLLPRSPHIPQDHEVLCDWINPTYLDMEYQ QIQ
Sbjct: 241 FHGPSLTRPPTYFEPLLPRSPHIPQDHEVLCDWINPTYLDMEYQVQIQ 288
Score = 55.8 bits (133), Expect(2) = e-171
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +1
Query: 988 KEFLKPEKFAEVCEAFGKGNVEWTTQGP 1071
KEFLKPEKFAEVCEA KG+VEWT+QGP
Sbjct: 300 KEFLKPEKFAEVCEALEKGDVEWTSQGP 327
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,302,022
Number of extensions: 693471
Number of successful extensions: 2063
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2056
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,854,232
Effective search space: 2275537624
Effective search space used: 2275537624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008856
(1071 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_808435.3| 2-oxoglutarate and iron-dependent oxygenase dom... 488 e-147
Alignment gi|NP_001087226.1| 2-oxoglutarate and iron-dependent oxygenase ... 387 e-116
>ref|NP_808435.3| 2-oxoglutarate and iron-dependent oxygenase domain-containing
protein 1 isoform 1 [Mus musculus].
Length = 545
Score = 488 bits (1256), Expect(2) = e-147
Identities = 232/284 (81%), Positives = 251/284 (88%)
Frame = +2
Query: 104 MNGKRSTELGPGRAGKKVKKEVMANISDAVTEETLKKQVAEAWSRRTPFRHEAIVMDMDP 283
MNGKR + GP R KK KK+V A SDAVTEE L+KQVAEAWS RTPF HEAI +DMDP
Sbjct: 1 MNGKRPADPGPARPMKKGKKQVSAEFSDAVTEEILRKQVAEAWSCRTPFSHEAIALDMDP 60
Query: 284 FLHCVIPNFIQSQSFLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALRKILF 463
FLHCVIPNFIQSQ FLEGL KELL+LDFHEKYNDLYKFQQSDDLK R+EPHI ALRK++F
Sbjct: 61 FLHCVIPNFIQSQDFLEGLHKELLSLDFHEKYNDLYKFQQSDDLKNRKEPHISALRKLMF 120
Query: 464 EHFRAWLSDISKIDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWDRSLGG 643
E FRAWLS +S IDLE TIDMSCAKYEF+DALLCHDDELEGRRIAFILYLVP WDR LGG
Sbjct: 121 EDFRAWLSKVSGIDLEPTIDMSCAKYEFTDALLCHDDELEGRRIAFILYLVPSWDRDLGG 180
Query: 644 TLDMYSVDEHFQPKQIVKSLIPSWNTLVFFEVSPISFHQVSEVLSEEKSRLSISGWFHGP 823
TLD+Y DEH QPKQIVKSLIPSWN LVFFEVSP+SFHQVSEVLSEE SRLSISGWF+GP
Sbjct: 181 TLDLYDTDEHLQPKQIVKSLIPSWNKLVFFEVSPVSFHQVSEVLSEETSRLSISGWFYGP 240
Query: 824 SLTRPPTYFEPLLPRSPHIPQDHEVLCDWINPTYLDMEYQGQIQ 955
SLTRPPTYFEP +PR+PHIPQDHE+L +WINP YL+M+YQ QIQ
Sbjct: 241 SLTRPPTYFEPPIPRNPHIPQDHEILYEWINPAYLEMDYQMQIQ 284
Score = 51.6 bits (122), Expect(2) = e-147
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +1
Query: 988 KEFLKPEKFAEVCEAFGKGNVEWTTQGP 1071
KEFLKPEKFAEVCEA KG+VEW + GP
Sbjct: 296 KEFLKPEKFAEVCEALEKGDVEWKSHGP 323
>ref|NP_001087226.1| 2-oxoglutarate and iron-dependent oxygenase domain-containing
protein 1 isoform 2 [Mus musculus].
Length = 502
Score = 387 bits (994), Expect(2) = e-116
Identities = 194/284 (68%), Positives = 210/284 (73%)
Frame = +2
Query: 104 MNGKRSTELGPGRAGKKVKKEVMANISDAVTEETLKKQVAEAWSRRTPFRHEAIVMDMDP 283
MNGKR + GP R KK KK+V A SDAVTEE L+KQVAEAWS RTPF HEAI +DMDP
Sbjct: 1 MNGKRPADPGPARPMKKGKKQVSAEFSDAVTEEILRKQVAEAWSCRTPFSHEAIALDMDP 60
Query: 284 FLHCVIPNFIQSQSFLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALRKILF 463
FLHCVIPNFIQSQ FLEGL KELL+LDFHEKYNDLYKFQQSDDLK R+EPHI ALRK++F
Sbjct: 61 FLHCVIPNFIQSQDFLEGLHKELLSLDFHEKYNDLYKFQQSDDLKNRKEPHISALRKLMF 120
Query: 464 EHFRAWLSDISKIDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWDRSLGG 643
E FRAWLS +S IDLE TIDMSCAKYEF+DALLCHDDELEGRRIAFILYLVP WDR LGG
Sbjct: 121 EDFRAWLSKVSGIDLEPTIDMSCAKYEFTDALLCHDDELEGRRIAFILYLVPSWDRDLGG 180
Query: 644 TLDMYSVDEHFQPKQIVKSLIPSWNTLVFFEVSPISFHQVSEVLSEEKSRLSISGWFHGP 823
TLD+Y DEH QPKQIVKSLIPSWN LVFFEVSP+SFHQ
Sbjct: 181 TLDLYDTDEHLQPKQIVKSLIPSWNKLVFFEVSPVSFHQ--------------------- 219
Query: 824 SLTRPPTYFEPLLPRSPHIPQDHEVLCDWINPTYLDMEYQGQIQ 955
HE+L +WINP YL+M+YQ QIQ
Sbjct: 220 ----------------------HEILYEWINPAYLEMDYQMQIQ 241
Score = 51.6 bits (122), Expect(2) = e-116
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +1
Query: 988 KEFLKPEKFAEVCEAFGKGNVEWTTQGP 1071
KEFLKPEKFAEVCEA KG+VEW + GP
Sbjct: 253 KEFLKPEKFAEVCEALEKGDVEWKSHGP 280
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,621,013
Number of extensions: 929495
Number of successful extensions: 2739
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2735
Number of HSP's successfully gapped: 5
Length of query: 357
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 255
Effective length of database: 12,553,887
Effective search space: 3201241185
Effective search space used: 3201241185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008856
(1071 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060703.3| 2-oxoglutarate and iron-dependent oxygenase dom... 535 e-159
>ref|NP_060703.3| 2-oxoglutarate and iron-dependent oxygenase domain-containing
protein 1 [Homo sapiens].
Length = 542
Score = 535 bits (1377), Expect(2) = e-159
Identities = 255/284 (89%), Positives = 265/284 (93%)
Frame = +2
Query: 104 MNGKRSTELGPGRAGKKVKKEVMANISDAVTEETLKKQVAEAWSRRTPFRHEAIVMDMDP 283
MNGKR E GP R GKK KKEVMA SDAVTEETLKKQVAEAWSRRTPF HE IVMDMDP
Sbjct: 1 MNGKRPAEPGPARVGKKGKKEVMAEFSDAVTEETLKKQVAEAWSRRTPFSHEVIVMDMDP 60
Query: 284 FLHCVIPNFIQSQSFLEGLQKELLNLDFHEKYNDLYKFQQSDDLKKRREPHICALRKILF 463
FLHCVIPNFIQSQ FLEGLQKEL+NLDFHEKYNDLYKFQQSDDLKKRREPHI LRKILF
Sbjct: 61 FLHCVIPNFIQSQDFLEGLQKELMNLDFHEKYNDLYKFQQSDDLKKRREPHISTLRKILF 120
Query: 464 EHFRAWLSDISKIDLESTIDMSCAKYEFSDALLCHDDELEGRRIAFILYLVPPWDRSLGG 643
E FR+WLSDISKIDLESTIDMSCAKYEF+DALLCHDDELEGRRIAFILYLVPPWDRS+GG
Sbjct: 121 EDFRSWLSDISKIDLESTIDMSCAKYEFTDALLCHDDELEGRRIAFILYLVPPWDRSMGG 180
Query: 644 TLDMYSVDEHFQPKQIVKSLIPSWNTLVFFEVSPISFHQVSEVLSEEKSRLSISGWFHGP 823
TLD+YS+DEHFQPKQIVKSLIPSWN LVFFEVSP+SFHQVSEVLSEEKSRLSISGWFHGP
Sbjct: 181 TLDLYSIDEHFQPKQIVKSLIPSWNKLVFFEVSPVSFHQVSEVLSEEKSRLSISGWFHGP 240
Query: 824 SLTRPPTYFEPLLPRSPHIPQDHEVLCDWINPTYLDMEYQGQIQ 955
SLTRPP YFEP +PRSPHIPQDHE+L DWINPTYLDM+YQ QIQ
Sbjct: 241 SLTRPPNYFEPPIPRSPHIPQDHEILYDWINPTYLDMDYQVQIQ 284
Score = 47.4 bits (111), Expect(2) = e-159
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +1
Query: 988 KEFLKPEKFAEVCEAFGKGNVEWTTQGP 1071
KEFLKPEKF +VCEA G+VEW+++GP
Sbjct: 296 KEFLKPEKFTKVCEALEHGHVEWSSRGP 323
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,971,950
Number of extensions: 1107250
Number of successful extensions: 3093
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3088
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 253
Effective length of database: 14,868,908
Effective search space: 3761833724
Effective search space used: 3761833724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008856
(1071 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893413.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 428 e-117
>gb|GL893413.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2180
Length = 45090
Score = 428 bits (216), Expect = e-117
Identities = 230/237 (97%)
Strand = Plus / Minus
Query: 2 ttggatagccctgggaaccacggaaagtcggcattctggaaggtctctgtaggaaaataa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33335 ttggatagccctgggaaccacggaaagtcggcattctggaaggtctctgtaggaaaataa 33276
Query: 62 ttgcttgatcagtgtggcgtgggtcttgtacattgcgaagagatgaatgggaaacggtcg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33275 ttgcttgatcagtgtggcgtgggtcttgtacattgcgaagagatgaatgggaaacggtcg 33216
Query: 122 actgagcttggccctggtcgggcgggnnnnnnngtaaagaaggaggtgatggcgaatatt 181
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 33215 actgagcttggccctggtcgggcgggaaaaaaagtaaagaaggaggtgatggcgaatatt 33156
Query: 182 tcggatgctgtcacggaggaaaccttgaaaaagcaggtggctgaggcctggagtcgt 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33155 tcggatgctgtcacggaggaaaccttgaaaaagcaggtggctgaggcctggagtcgt 33099
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 257 gaagccattgttatggacatggacccctttcttcactgcgtgatcccaaacttcatccaa 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31503 gaagccattgttatggacatggacccctttcttcactgcgtgatcccaaacttcatccaa 31444
Query: 317 agccaaagcttcttggaaggacttcagaaggaacttttgaacttggacttccatgaaaag 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31443 agccaaagcttcttggaaggacttcagaaggaacttttgaacttggacttccatgaaaag 31384
Query: 377 tataacgatttatataagttccaacag 403
|||||||||||||||||||||||||||
Sbjct: 31383 tataacgatttatataagttccaacag 31357
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 757 ccaggtgtctgaagtcctgtctgaagagaagtctcgtttgtctatcagtggctggtttca 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17140 ccaggtgtctgaagtcctgtctgaagagaagtctcgtttgtctatcagtggctggtttca 17081
Query: 817 tggtccttcgctgaccaggcctcccacctactttgaacctctcctacctcggagccctca 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17080 tggtccttcgctgaccaggcctcccacctactttgaacctctcctacctcggagccctca 17021
Query: 877 catcccacaagat 889
|||||||||||||
Sbjct: 17020 catcccacaagat 17008
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 549 cagatgctctgctctgccatgatgacgagctggaagggcgccggatcgccttcattcttt 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18211 cagatgctctgctctgccatgatgacgagctggaagggcgccggatcgccttcattcttt 18152
Query: 609 acctggttcctccctgggacaggagcctggggggcaccttggacatgtacagtgttgatg 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18151 acctggttcctccctgggacaggagcctggggggcaccttggacatgtacagtgttgatg 18092
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 449 aggaaaattctgtttgaacatttccgggcttggctttctgacatttccaagattgatctg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23445 aggaaaattctgtttgaacatttccgggcttggctttctgacatttccaagattgatctg 23386
Query: 509 gaatcaaccattgacatgtcttgtgctaaatatgaattttcag 551
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23385 gaatcaaccattgacatgtcttgtgctaaatatgaattttcag 23343
Score = 202 bits (102), Expect = 3e-49
Identities = 112/114 (98%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 890 catgaagttttgtgtgactggatcaaccctacttatcttgacatggaataccaaggtcaa 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 16288 catgaagttttgtgtgactggatcaaccctacttatcttgacatggaataccaagttcaa 16229
Query: 950 atacaagaagaatttgaagaaagctccgaaattctcct-aaagagttccttaag 1002
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 16228 atacaagaagaatttgaagaaagctccgaaattctcctaaaagagttccttaag 16175
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 668 gagcactttcagccgaagcagattgtcaagtcccttatcccatcatggaacacactggtt 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17411 gagcactttcagccgaagcagattgtcaagtcccttatcccatcatggaacacactggtt 17352
Query: 728 ttcttcgaagtatctccaatatcctttcaccaggt 762
|||||||||||||||||||||||||||||||||||
Sbjct: 17351 ttcttcgaagtatctccaatatcctttcaccaggt 17317
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 402 agtctgatgatttgaagaaaagaagagagcctcacatctgtgctttaagg 451
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26986 agtctgatgatttgaagaaaagaagagagcctcacatctgtgctttaagg 26937
Score = 87.7 bits (44), Expect = 1e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 1001 agcctgagaaatttgcagaggtgtgtgaggcttttggaaaaggaaatgtggaatggacca 1060
|||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 14364 agcctgagaaatttgcagaggtgtgtgaggctttggagaaaggagatgtggaatggacca 14305
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,274,631
Number of extensions: 223
Number of successful extensions: 223
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 9
Length of query: 1071
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1050
Effective length of database: 2,808,413,156
Effective search space: 2948833813800
Effective search space used: 2948833813800
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)