Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008858
(922 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030212.1| ras-related protein Rab-19 [Bos taurus]. 376 e-104
Alignment gi|NP_001069697.1| ras-related protein Rab-30 [Bos taurus]. 180 1e-45
Alignment gi|NP_001069701.1| ras-related protein Rab-1B [Bos taurus]. 176 3e-44
Alignment gi|NP_001069785.1| ras-related protein Rab-8B [Bos taurus]. 175 4e-44
Alignment gi|NP_001098951.1| ras-related protein Rab-8A [Bos taurus]. 173 2e-43
Alignment gi|NP_001039674.1| ras-related protein Rab-26 [Bos taurus]. 171 8e-43
Alignment gi|NP_001019711.1| ras-related protein Rab-13 [Bos taurus]. 171 1e-42
Alignment gi|NP_001179594.1| ras-related protein Rab-2B [Bos taurus]. 163 2e-40
Alignment gi|XP_002690779.1| PREDICTED: RAB2B protein-like [Bos taurus]. 163 2e-40
Alignment gi|NP_001030468.1| ras-related protein Rab-11B [Bos taurus]. 161 7e-40
>ref|NP_001030212.1| ras-related protein Rab-19 [Bos taurus].
Length = 217
Score = 376 bits (966), Expect = e-104
Identities = 190/217 (87%), Positives = 194/217 (89%), Gaps = 1/217 (0%)
Frame = +3
Query: 144 MQFSSSARAADENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALE 323
MQFSSSAR DENFDYLFK+IL+GDSNVGKTCVVQHFKSGVY EAQQNTIGVDFTVRALE
Sbjct: 1 MQFSSSARTVDENFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALE 60
Query: 324 IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA 503
IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA
Sbjct: 61 IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA 120
Query: 504 ANLVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELI 683
ANLVIMLIGNKCDLWEKRHVLFEDAC LAEKYGLLAVLETSAKESKNIDEVFVLMAREL+
Sbjct: 121 ANLVIMLIGNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELM 180
Query: 684 ARNSLPLYAEGA-XXXXXXXXXXXXXXXXREKTQCTC 791
AR+SLPLY EGA REK QCTC
Sbjct: 181 ARHSLPLYGEGAPGSLPLESTPVLMAPAPREKNQCTC 217
>ref|NP_001069697.1| ras-related protein Rab-30 [Bos taurus].
Length = 203
Score = 180 bits (457), Expect = 1e-45
Identities = 84/170 (49%), Positives = 127/170 (74%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
E++D+LFK++L+G++ VGKTC+V+ F G++ Q TIGVDF ++ +EI+G+KVK+Q+W
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFR+ITQSYYRSA+A I+ YD+T +F +P W+ EIE+Y + ++ +L+GNK
Sbjct: 64 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 123
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIA 686
DL E+R V + A +E + LETSAKES N++++F+ +A LI+
Sbjct: 124 IDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLIS 172
>ref|NP_001069701.1| ras-related protein Rab-1B [Bos taurus].
Length = 201
Score = 176 bits (446), Expect = 3e-44
Identities = 82/169 (48%), Positives = 119/169 (70%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+DYLFK++L+GDS VGK+C++ F YTE+ +TIGVDF +R +E+DGK +K+Q+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQERFRTIT SYYR AH I+ YD+T + ++ +V W+ EI++Y + N+ +L+GNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
L K+ V A A+ G + LETSAK + N+++ F+ MA E+ R
Sbjct: 125 LTTKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMAAEIKKR 172
>ref|NP_001069785.1| ras-related protein Rab-8B [Bos taurus].
Length = 207
Score = 175 bits (444), Expect = 4e-44
Identities = 78/171 (45%), Positives = 121/171 (70%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
+ +DYLFK++L+GDS VGKTC++ F + +TIG+DF +R +E+DGKK+K+Q+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFRTIT +YYR A ++ YD+T +F+++ +WI IE++ ++++ M++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
CD+ +KR V E LA YG + LE SAK S N++E F +AR+++ +
Sbjct: 123 CDMNDKRQVSKERGEKLAIDYG-IKFLEASAKSSMNVEEAFFTLARDIMTK 172
>ref|NP_001098951.1| ras-related protein Rab-8A [Bos taurus].
Length = 207
Score = 173 bits (438), Expect = 2e-43
Identities = 78/171 (45%), Positives = 121/171 (70%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
+ +DYLFK++L+GDS VGKTCV+ F + +TIG+DF +R +E+DGK++K+Q+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFRTIT +YYR A ++ YD+T +F+++ +WI IE++ +A++ M++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
CD+ +KR V E LA YG + +ETSAK + N++ F +AR++ A+
Sbjct: 123 CDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFYTLARDIKAK 172
>ref|NP_001039674.1| ras-related protein Rab-26 [Bos taurus].
Length = 256
Score = 171 bits (433), Expect = 8e-43
Identities = 83/181 (45%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Frame = +3
Query: 156 SSARAADENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQ-NTIGVDFTVRALEIDG 332
SS + +D FKV+LVGDS VGKTC++ FK G + +T+G+DF + +++DG
Sbjct: 51 SSVGGGGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDG 110
Query: 333 KKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANL 512
KVK+Q+WDTAGQERFR++T +YYR AHA ++ YD+T +++F+S+ W+ EI+++ ++
Sbjct: 111 MKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDV 170
Query: 513 VIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARN 692
V+ML+GNK D ++R V EDA LA+ YG L +ETSAK N+D F +A+EL R+
Sbjct: 171 VLMLLGNKVDSAQERAVKREDAEKLAKDYG-LPFMETSAKTGLNVDLAFTAIAKELKQRH 229
Query: 693 S 695
+
Sbjct: 230 T 230
>ref|NP_001019711.1| ras-related protein Rab-13 [Bos taurus].
Length = 203
Score = 171 bits (432), Expect = 1e-42
Identities = 78/170 (45%), Positives = 120/170 (70%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+D+LFK++L+GDS VGKTC++ F + +TIG+DF +R ++I+GKK+K+QVWDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDT 64
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQERF+TIT +YYR A I+ YD+T +FE++ +W+ I++ +A + +L+GNKCD
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARN 692
+ KR V E A LA ++G + ETSAK S N+DE F +AR+++ ++
Sbjct: 125 MEAKRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDILLKS 173
>ref|NP_001179594.1| ras-related protein Rab-2B [Bos taurus].
Length = 216
Score = 163 bits (413), Expect = 2e-40
Identities = 76/166 (45%), Positives = 115/166 (69%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+ YLFK I++GD+ VGK+C++ F + TIGV+F R + IDGK++K+Q+WDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQE FR+IT+SYYR A A++ YD+TRR TF + W+ + ++ ++N+VIMLIGNK D
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMAREL 680
L +R V E+ A ++GL+ +ETSAK + N++E F+ A+E+
Sbjct: 123 LESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEI 167
>ref|XP_002690779.1| PREDICTED: RAB2B protein-like [Bos taurus].
Length = 216
Score = 163 bits (413), Expect = 2e-40
Identities = 76/166 (45%), Positives = 115/166 (69%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+ YLFK I++GD+ VGK+C++ F + TIGV+F R + IDGK++K+Q+WDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQE FR+IT+SYYR A A++ YD+TRR TF + W+ + ++ ++N+VIMLIGNK D
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMAREL 680
L +R V E+ A ++GL+ +ETSAK + N++E F+ A+E+
Sbjct: 123 LESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEI 167
>ref|NP_001030468.1| ras-related protein Rab-11B [Bos taurus].
Length = 218
Score = 161 bits (408), Expect = 7e-40
Identities = 75/169 (44%), Positives = 115/169 (68%)
Frame = +3
Query: 174 DENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQV 353
D+ +DYLFKV+L+GDS VGK+ ++ F + ++TIGV+F R++++DGK +K Q+
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 354 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGN 533
WDTAGQER+R IT +YYR A A++ YD+ + T+E+V W+ E+ + +N+VIML+GN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 534 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMAREL 680
K DL R V ++A AEK L+ +ETSA +S N++E F + E+
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEI 172
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,161,090
Number of extensions: 1193671
Number of successful extensions: 6066
Number of sequences better than 1.0e-05: 160
Number of HSP's gapped: 5875
Number of HSP's successfully gapped: 160
Length of query: 307
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,306,398
Effective search space: 2932811590
Effective search space used: 2932811590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008858
(922 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539883.1| PREDICTED: similar to RAB19, member RAS oncogen... 367 e-101
Alignment gi|NP_001003153.1| ras-related protein Rab-1A [Canis lupus fami... 184 1e-46
Alignment gi|XP_533993.1| PREDICTED: similar to RAB30, member RAS oncogen... 180 1e-45
Alignment gi|XP_865976.1| PREDICTED: similar to RAB1B, member RAS oncogen... 176 3e-44
Alignment gi|XP_852545.1| PREDICTED: similar to RAB1B, member RAS oncogen... 176 3e-44
Alignment gi|NP_001003152.1| ras-related protein Rab-8A [Canis lupus fami... 173 2e-43
Alignment gi|XP_855569.1| PREDICTED: RAB8A, member RAS oncogene family [C... 173 2e-43
Alignment gi|XP_855128.1| PREDICTED: similar to Ras-related protein Rab-1... 172 4e-43
Alignment gi|XP_853648.1| PREDICTED: similar to RAB26, member RAS oncogen... 170 2e-42
Alignment gi|XP_538000.2| PREDICTED: similar to RAB2, member RAS oncogene... 164 8e-41
>ref|XP_539883.1| PREDICTED: similar to RAB19, member RAS oncogene family [Canis
familiaris].
Length = 217
Score = 367 bits (941), Expect = e-101
Identities = 185/217 (85%), Positives = 191/217 (88%), Gaps = 1/217 (0%)
Frame = +3
Query: 144 MQFSSSARAADENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALE 323
MQFSSS+RAADENFDYLFK+IL+GDSNVGKTCVVQHFKSGVYTE QQNTIGVDFTVR+LE
Sbjct: 1 MQFSSSSRAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLE 60
Query: 324 IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA 503
IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA
Sbjct: 61 IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA 120
Query: 504 ANLVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELI 683
ANLVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKN+DEVF LMARELI
Sbjct: 121 ANLVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNVDEVFTLMARELI 180
Query: 684 ARNSLPLYAEGA-XXXXXXXXXXXXXXXXREKTQCTC 791
ARNSL L E +EKT C C
Sbjct: 181 ARNSLHLLGERTLDSPAPDSRPVVLAQDPKEKTHCMC 217
>ref|NP_001003153.1| ras-related protein Rab-1A [Canis lupus familiaris].
Length = 205
Score = 184 bits (466), Expect = 1e-46
Identities = 87/179 (48%), Positives = 124/179 (69%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+DYLFK++L+GDS VGK+C++ F YTE+ +TIGVDF +R +E+DGK +K+Q+WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQERFRTIT SYYR AH I+ YD+T + +F +V W+ EI++Y + N+ +L+GNKCD
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARNSLPLYAEGA 719
L K+ V + A A+ G + LETSAK + N+++ F+ MA E+ R A GA
Sbjct: 128 LTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA 185
>ref|XP_533993.1| PREDICTED: similar to RAB30, member RAS oncogene family [Canis
familiaris].
Length = 203
Score = 180 bits (457), Expect = 1e-45
Identities = 84/170 (49%), Positives = 127/170 (74%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
E++D+LFK++L+G++ VGKTC+V+ F G++ Q TIGVDF ++ +EI+G+KVK+Q+W
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFR+ITQSYYRSA+A I+ YD+T +F +P W+ EIE+Y + ++ +L+GNK
Sbjct: 64 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 123
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIA 686
DL E+R V + A +E + LETSAKES N++++F+ +A LI+
Sbjct: 124 IDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLIS 172
>ref|XP_865976.1| PREDICTED: similar to RAB1B, member RAS oncogene family isoform 5
[Canis familiaris].
Length = 201
Score = 176 bits (446), Expect = 3e-44
Identities = 82/169 (48%), Positives = 119/169 (70%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+DYLFK++L+GDS VGK+C++ F YTE+ +TIGVDF +R +E+DGK +K+Q+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQERFRTIT SYYR AH I+ YD+T + ++ +V W+ EI++Y + N+ +L+GNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
L K+ V A A+ G + LETSAK + N+++ F+ MA E+ R
Sbjct: 125 LTTKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMAAEIKKR 172
>ref|XP_852545.1| PREDICTED: similar to RAB1B, member RAS oncogene family isoform 1
[Canis familiaris].
Length = 201
Score = 176 bits (446), Expect = 3e-44
Identities = 82/169 (48%), Positives = 119/169 (70%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+DYLFK++L+GDS VGK+C++ F YTE+ +TIGVDF +R +E+DGK +K+Q+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQERFRTIT SYYR AH I+ YD+T + ++ +V W+ EI++Y + N+ +L+GNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
L K+ V A A+ G + LETSAK + N+++ F+ MA E+ R
Sbjct: 125 LTTKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMAAEIKKR 172
>ref|NP_001003152.1| ras-related protein Rab-8A [Canis lupus familiaris].
Length = 207
Score = 173 bits (438), Expect = 2e-43
Identities = 78/171 (45%), Positives = 121/171 (70%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
+ +DYLFK++L+GDS VGKTCV+ F + +TIG+DF +R +E+DGK++K+Q+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFRTIT +YYR A ++ YD+T +F+++ +WI IE++ +A++ M++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
CD+ +KR V E LA YG + +ETSAK + N++ F +AR++ A+
Sbjct: 123 CDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAK 172
>ref|XP_855569.1| PREDICTED: RAB8A, member RAS oncogene family [Canis familiaris].
Length = 207
Score = 173 bits (438), Expect = 2e-43
Identities = 78/171 (45%), Positives = 121/171 (70%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
+ +DYLFK++L+GDS VGKTCV+ F + +TIG+DF +R +E+DGK++K+Q+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFRTIT +YYR A ++ YD+T +F+++ +WI IE++ +A++ M++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
CD+ +KR V E LA YG + +ETSAK + N++ F +AR++ A+
Sbjct: 123 CDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAK 172
>ref|XP_855128.1| PREDICTED: similar to Ras-related protein Rab-13 [Canis
familiaris].
Length = 248
Score = 172 bits (436), Expect = 4e-43
Identities = 79/179 (44%), Positives = 123/179 (68%)
Frame = +3
Query: 156 SSARAADENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGK 335
S A + +D+LFK++L+GDS VGKTC++ F + +TIG+DF +R ++++GK
Sbjct: 41 SPVSAMAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDSFNNTYISTIGIDFKIRTVDVEGK 100
Query: 336 KVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLV 515
K+K+QVWDTAGQERF+TIT +YYR A I+ YD+T +FE++ +W+ I++ +A +
Sbjct: 101 KIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVE 160
Query: 516 IMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARN 692
+L+GNKCD+ KR V E A LA ++G + ETSAK S N+DE F +AR+++ ++
Sbjct: 161 RLLLGNKCDMEAKRKVQKEQAIKLAREHG-IRFFETSAKSSTNVDEAFSSLARDILLKS 218
>ref|XP_853648.1| PREDICTED: similar to RAB26, member RAS oncogene family [Canis
familiaris].
Length = 244
Score = 170 bits (430), Expect = 2e-42
Identities = 81/171 (47%), Positives = 122/171 (71%), Gaps = 1/171 (0%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQ-NTIGVDFTVRALEIDGKKVKMQVWD 359
+D FKV+LVGDS VGKTC++ FK G + +T+G+DF + L++DG KVK+Q+WD
Sbjct: 48 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQIWD 107
Query: 360 TAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKC 539
TAGQERFR++T +YYR AHA ++ YD+T +++F+++ W+ EI++Y N+V+ML+GNK
Sbjct: 108 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIQEYAQHNVVLMLLGNKV 167
Query: 540 DLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARN 692
D ++R V +D LA++YG L +ETSAK N+D F +A+EL R+
Sbjct: 168 DSAQERVVKRKDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELKQRS 217
>ref|XP_538000.2| PREDICTED: similar to RAB2, member RAS oncogene family [Canis
familiaris].
Length = 271
Score = 164 bits (416), Expect = 8e-41
Identities = 77/166 (46%), Positives = 113/166 (68%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+ YLFK I++GD+ VGK+C++ F + TIGV+F R + IDGK++K+Q+WDT
Sbjct: 61 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKRIKLQIWDT 120
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQE FR+IT+SYYR A A++ YD+TRR TF + W+ + Y +N+VIMLIGNK D
Sbjct: 121 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARHYSNSNMVIMLIGNKSD 180
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMAREL 680
L +R V E+ A ++GL+ +ETSAK + N++E F+ A+E+
Sbjct: 181 LESRREVNKEEGEAFAREHGLI-FMETSAKTASNVEEAFINTAKEI 225
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,877,488
Number of extensions: 1226681
Number of successful extensions: 6264
Number of sequences better than 1.0e-05: 155
Number of HSP's gapped: 6101
Number of HSP's successfully gapped: 156
Length of query: 307
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 205
Effective length of database: 15,474,232
Effective search space: 3172217560
Effective search space used: 3172217560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008858
(922 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134657.1| PREDICTED: ras-related protein Rab-19-like [... 260 8e-70
Alignment gi|NP_001026957.1| ras-related protein Rab-1A [Sus scrofa]. 184 8e-47
Alignment gi|NP_001230731.1| RAB8A, member RAS oncogene family [Sus scrof... 173 1e-43
Alignment gi|NP_001116645.1| ras-related protein Rab-1B [Sus scrofa]. 172 2e-43
Alignment gi|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus s... 171 7e-43
Alignment gi|XP_003124780.1| PREDICTED: ras-related protein Rab-26-like [... 168 4e-42
Alignment gi|XP_003128629.1| PREDICTED: ras-related protein Rab-2B-like [... 163 1e-40
Alignment gi|XP_003128612.1| PREDICTED: ras-related protein Rab-2B-like [... 163 1e-40
Alignment gi|XP_001926739.2| PREDICTED: ras-related protein Rab-2A [Sus s... 163 1e-40
Alignment gi|NP_001026958.1| ras-related protein Rab-11A [Sus scrofa]. 162 2e-40
>ref|XP_003134657.1| PREDICTED: ras-related protein Rab-19-like [Sus scrofa].
Length = 159
Score = 260 bits (664), Expect = 8e-70
Identities = 129/129 (100%), Positives = 129/129 (100%)
Frame = +3
Query: 144 MQFSSSARAADENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALE 323
MQFSSSARAADENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALE
Sbjct: 1 MQFSSSARAADENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALE 60
Query: 324 IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA 503
IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA
Sbjct: 61 IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA 120
Query: 504 ANLVIMLIG 530
ANLVIMLIG
Sbjct: 121 ANLVIMLIG 129
>ref|NP_001026957.1| ras-related protein Rab-1A [Sus scrofa].
Length = 205
Score = 184 bits (466), Expect = 8e-47
Identities = 87/179 (48%), Positives = 124/179 (69%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+DYLFK++L+GDS VGK+C++ F YTE+ +TIGVDF +R +E+DGK +K+Q+WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQERFRTIT SYYR AH I+ YD+T + +F +V W+ EI++Y + N+ +L+GNKCD
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARNSLPLYAEGA 719
L K+ V + A A+ G + LETSAK + N+++ F+ MA E+ R A GA
Sbjct: 128 LTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA 185
>ref|NP_001230731.1| RAB8A, member RAS oncogene family [Sus scrofa].
Length = 207
Score = 173 bits (438), Expect = 1e-43
Identities = 78/171 (45%), Positives = 121/171 (70%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
+ +DYLFK++L+GDS VGKTCV+ F + +TIG+DF +R +E+DGK++K+Q+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFRTIT +YYR A ++ YD+T +F+++ +WI IE++ +A++ M++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
CD+ +KR V E LA YG + +ETSAK + N++ F +AR++ A+
Sbjct: 123 CDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAK 172
>ref|NP_001116645.1| ras-related protein Rab-1B [Sus scrofa].
Length = 201
Score = 172 bits (437), Expect = 2e-43
Identities = 81/169 (47%), Positives = 118/169 (69%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+DYLFK++L+GDS VGK+C++ F YTE+ +TIGVDF +R +E+DGK +K+Q+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQER RTIT SYYR AH I+ YD+T + ++ +V W+ EI++Y + N+ +L+GNK D
Sbjct: 65 AGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
L K+ V A A+ G + LETSAK + N+++ F+ MA E+ R
Sbjct: 125 LTTKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMAAEIKKR 172
>ref|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus scrofa].
Length = 203
Score = 171 bits (432), Expect = 7e-43
Identities = 78/170 (45%), Positives = 120/170 (70%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+D+LFK++L+GDS VGKTC++ F + +TIG+DF +R ++I+GKK+K+QVWDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 64
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQERF+TIT +YYR A I+ YD+T +FE++ +W+ I++ +A + +L+GNKCD
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARN 692
+ KR V E A LA ++G + ETSAK S N+DE F +AR+++ ++
Sbjct: 125 MEAKRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDILLKS 173
>ref|XP_003124780.1| PREDICTED: ras-related protein Rab-26-like [Sus scrofa].
Length = 256
Score = 168 bits (425), Expect = 4e-42
Identities = 81/179 (45%), Positives = 124/179 (69%), Gaps = 1/179 (0%)
Frame = +3
Query: 156 SSARAADENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQ-NTIGVDFTVRALEIDG 332
SS + +D FKV+LVGDS VGKTC++ FK G + +T+G+DF + L++DG
Sbjct: 51 SSLGGGGDIYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKILDVDG 110
Query: 333 KKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANL 512
KVK+Q+WDTAGQERFR++T +YYR AHA ++ YD+T +++F+S+ W+ EI++Y ++
Sbjct: 111 MKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEYAQRDV 170
Query: 513 VIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
V++L+GNK D ++R V ED LA+++G L +ETSA+ N+D F +A+EL R
Sbjct: 171 VLLLLGNKVDSAQERVVRREDGEQLAKEFG-LPFMETSARTGLNVDLAFTAVAKELKQR 228
>ref|XP_003128629.1| PREDICTED: ras-related protein Rab-2B-like [Sus scrofa].
Length = 216
Score = 163 bits (413), Expect = 1e-40
Identities = 76/166 (45%), Positives = 115/166 (69%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+ YLFK I++GD+ VGK+C++ F + TIGV+F R + IDGK++K+Q+WDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQE FR+IT+SYYR A A++ YD+TRR TF + W+ + ++ ++N+VIMLIGNK D
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMAREL 680
L +R V E+ A ++GL+ +ETSAK + N++E F+ A+E+
Sbjct: 123 LESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEI 167
>ref|XP_003128612.1| PREDICTED: ras-related protein Rab-2B-like [Sus scrofa].
Length = 216
Score = 163 bits (413), Expect = 1e-40
Identities = 76/166 (45%), Positives = 115/166 (69%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+ YLFK I++GD+ VGK+C++ F + TIGV+F R + IDGK++K+Q+WDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQE FR+IT+SYYR A A++ YD+TRR TF + W+ + ++ ++N+VIMLIGNK D
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMAREL 680
L +R V E+ A ++GL+ +ETSAK + N++E F+ A+E+
Sbjct: 123 LESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEI 167
>ref|XP_001926739.2| PREDICTED: ras-related protein Rab-2A [Sus scrofa].
Length = 212
Score = 163 bits (413), Expect = 1e-40
Identities = 76/166 (45%), Positives = 114/166 (68%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+ YLFK I++GD+ VGK+C++ F + TIGV+F R + IDGK++K+Q+WDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQE FR+IT+SYYR A A++ YD+TRR TF + W+ + ++ +N+VIMLIGNK D
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMAREL 680
L +R V E+ A ++GL+ +ETSAK + N++E F+ A+E+
Sbjct: 123 LESRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAFINTAKEI 167
>ref|NP_001026958.1| ras-related protein Rab-11A [Sus scrofa].
Length = 216
Score = 162 bits (410), Expect = 2e-40
Identities = 75/169 (44%), Positives = 115/169 (68%)
Frame = +3
Query: 174 DENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQV 353
D+ +DYLFKV+L+GDS VGK+ ++ F + ++TIGV+F R++++DGK +K Q+
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 354 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGN 533
WDTAGQER+R IT +YYR A A++ YD+ + T+E+V W+ E+ + +N+VIML+GN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 534 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMAREL 680
K DL R V ++A AEK G L+ +ETSA +S N++ F + E+
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEI 172
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,285,659
Number of extensions: 770432
Number of successful extensions: 3982
Number of sequences better than 1.0e-05: 121
Number of HSP's gapped: 3836
Number of HSP's successfully gapped: 121
Length of query: 307
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 208
Effective length of database: 8,879,129
Effective search space: 1846858832
Effective search space used: 1846858832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008858
(922 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035356.1| ras-related protein Rab-19 [Mus musculus]. 360 1e-99
Alignment gi|NP_001034483.1| ras-related protein Rab-43 isoform a [Mus mu... 231 5e-61
Alignment gi|NP_033022.1| ras-related protein Rab-1A [Mus musculus]. 184 1e-46
Alignment gi|NP_083770.2| ras-related protein Rab-30 [Mus musculus]. 180 1e-45
Alignment gi|NP_775589.1| ras-related protein Rab-8B [Mus musculus]. 177 1e-44
Alignment gi|NP_083852.1| ras-related protein Rab-1B [Mus musculus]. 176 3e-44
Alignment gi|NP_075615.2| ras-related protein Rab-8A [Mus musculus]. 173 2e-43
Alignment gi|NP_796349.1| ras-related protein Rab-26 [Mus musculus]. 169 3e-42
Alignment gi|NP_080953.1| ras-related protein Rab-13 [Mus musculus]. 166 3e-41
Alignment gi|NP_067493.1| ras-related protein Rab-2A [Mus musculus]. 163 2e-40
>ref|NP_035356.1| ras-related protein Rab-19 [Mus musculus].
Length = 217
Score = 360 bits (923), Expect = 1e-99
Identities = 182/217 (83%), Positives = 192/217 (88%), Gaps = 1/217 (0%)
Frame = +3
Query: 144 MQFSSSARAADENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALE 323
MQFSSS+R +DEN DYLFKVIL+GDSNVGKTCVVQHFKSGVY+E+QQNTIGVDFTVR+LE
Sbjct: 1 MQFSSSSRTSDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLE 60
Query: 324 IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA 503
IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA
Sbjct: 61 IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA 120
Query: 504 ANLVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELI 683
ANLVIMLIGNK DLWEKRHVLFEDACTLAEK+GLLAVLETSAKES+NIDEVFVLMA+ELI
Sbjct: 121 ANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELI 180
Query: 684 ARNSLPLYAEGA-XXXXXXXXXXXXXXXXREKTQCTC 791
ARNSL LY E A E T+CTC
Sbjct: 181 ARNSLHLYGESAQQGLSQDSSPVLVAQVPNESTRCTC 217
>ref|NP_001034483.1| ras-related protein Rab-43 isoform a [Mus musculus].
Length = 210
Score = 231 bits (590), Expect = 5e-61
Identities = 107/180 (59%), Positives = 146/180 (81%)
Frame = +3
Query: 174 DENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQV 353
DE++D+LFK++LVGD++VGKTCVVQ FK+G ++ Q +TIGVDFT++ LEI GK+VK+Q+
Sbjct: 10 DEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQI 69
Query: 354 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGN 533
WDTAGQERFRTITQSYYRSA+ AI+AYD+++RSTF SVPHWI ++ KY +N+V +LIGN
Sbjct: 70 WDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGN 129
Query: 534 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARNSLPLYAE 713
K DL + R V +A +LAE Y +L +ETSAK+S N++E F +A ELI R+ P+++E
Sbjct: 130 KSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMRHGGPMFSE 189
>ref|NP_033022.1| ras-related protein Rab-1A [Mus musculus].
Length = 205
Score = 184 bits (466), Expect = 1e-46
Identities = 87/179 (48%), Positives = 124/179 (69%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+DYLFK++L+GDS VGK+C++ F YTE+ +TIGVDF +R +E+DGK +K+Q+WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQERFRTIT SYYR AH I+ YD+T + +F +V W+ EI++Y + N+ +L+GNKCD
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARNSLPLYAEGA 719
L K+ V + A A+ G + LETSAK + N+++ F+ MA E+ R A GA
Sbjct: 128 LTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA 185
>ref|NP_083770.2| ras-related protein Rab-30 [Mus musculus].
Length = 203
Score = 180 bits (457), Expect = 1e-45
Identities = 84/170 (49%), Positives = 127/170 (74%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
E++D+LFK++L+G++ VGKTC+V+ F G++ Q TIGVDF ++ +EI+G+KVK+Q+W
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFR+ITQSYYRSA+A I+ YD+T +F +P W+ EIE+Y + ++ +L+GNK
Sbjct: 64 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 123
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIA 686
DL E+R V + A +E + LETSAKES N++++F+ +A LI+
Sbjct: 124 IDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLIS 172
>ref|NP_775589.1| ras-related protein Rab-8B [Mus musculus].
Length = 207
Score = 177 bits (449), Expect = 1e-44
Identities = 79/171 (46%), Positives = 122/171 (71%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
+ +DYLFK++L+GDS VGKTC++ F + +TIG+DF +R +E+DGKK+K+Q+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFRTIT +YYR A ++ YD+T +F+++ +WI IE++ ++++ M++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
CD+ +KR V E LA YG + LETSAK S N++E F +AR+++ +
Sbjct: 123 CDMNDKRQVSKERGEKLAIDYG-IKFLETSAKSSTNVEEAFFTLARDIMTK 172
>ref|NP_083852.1| ras-related protein Rab-1B [Mus musculus].
Length = 201
Score = 176 bits (445), Expect = 3e-44
Identities = 82/169 (48%), Positives = 119/169 (70%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+DYLFK++L+GDS VGK+C++ F YTE+ +TIGVDF +R +E+DGK +K+Q+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQERFRTIT SYYR AH I+ YD+T + ++ +V W+ EI++Y + N+ +L+GNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
L K+ V A A+ G + LETSAK + N+++ F+ MA E+ R
Sbjct: 125 LTTKKVVDNTTAKEFADSLG-VPFLETSAKNATNVEQAFMTMAAEIKKR 172
>ref|NP_075615.2| ras-related protein Rab-8A [Mus musculus].
Length = 207
Score = 173 bits (438), Expect = 2e-43
Identities = 78/171 (45%), Positives = 121/171 (70%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
+ +DYLFK++L+GDS VGKTCV+ F + +TIG+DF +R +E+DGK++K+Q+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFRTIT +YYR A ++ YD+T +F+++ +WI IE++ +A++ M++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
CD+ +KR V E LA YG + +ETSAK + N++ F +AR++ A+
Sbjct: 123 CDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAK 172
>ref|NP_796349.1| ras-related protein Rab-26 [Mus musculus].
Length = 260
Score = 169 bits (428), Expect = 3e-42
Identities = 80/172 (46%), Positives = 121/172 (70%), Gaps = 1/172 (0%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQ-NTIGVDFTVRALEIDGKKVKMQVWD 359
+D FKV+LVGDS VGKTC++ FK G + +T+G+DF + L++DG KVK+Q+WD
Sbjct: 64 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWD 123
Query: 360 TAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKC 539
TAGQERFR++T +YYR AHA ++ YD+T + +F+++ W+ EI++Y ++V+ML+GNK
Sbjct: 124 TAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKV 183
Query: 540 DLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARNS 695
D + R V ED LA++YG L +ETSA+ N+D F +A+EL R++
Sbjct: 184 DSTQDRVVKREDGEKLAKEYG-LPFMETSARTGLNVDLAFTAIAKELKQRSA 234
>ref|NP_080953.1| ras-related protein Rab-13 [Mus musculus].
Length = 202
Score = 166 bits (419), Expect = 3e-41
Identities = 76/169 (44%), Positives = 118/169 (69%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+D+LFK++L+GDS VGKTC++ F + +TIG+DF +R ++I+GK++K+QVWDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDT 64
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQERF+TIT +YYR A I+ YD+T +FE++ +W+ I++ +A + +L+GNKCD
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
+ KR V E A LA ++ + ETSAK S N+DE F +AR+++ +
Sbjct: 125 MEAKRQVQREQAEKLAREH-RIRFFETSAKSSVNVDEAFSSLARDILLK 172
>ref|NP_067493.1| ras-related protein Rab-2A [Mus musculus].
Length = 212
Score = 163 bits (413), Expect = 2e-40
Identities = 76/166 (45%), Positives = 114/166 (68%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+ YLFK I++GD+ VGK+C++ F + TIGV+F R + IDGK++K+Q+WDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQE FR+IT+SYYR A A++ YD+TRR TF + W+ + ++ +N+VIMLIGNK D
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMAREL 680
L +R V E+ A ++GL+ +ETSAK + N++E F+ A+E+
Sbjct: 123 LESRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAFINTAKEI 167
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,764,157
Number of extensions: 997460
Number of successful extensions: 5033
Number of sequences better than 1.0e-05: 138
Number of HSP's gapped: 4865
Number of HSP's successfully gapped: 138
Length of query: 307
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 206
Effective length of database: 12,583,923
Effective search space: 2592288138
Effective search space used: 2592288138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008858
(922 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008749.2| ras-related protein Rab-19 [Homo sapiens]. 369 e-102
Alignment gi|NP_001191815.1| ras-related protein Rab-43 isoform a [Homo s... 236 2e-62
Alignment gi|NP_001191814.1| ras-related protein Rab-43 isoform a [Homo s... 236 2e-62
Alignment gi|NP_001191813.1| ras-related protein Rab-43 isoform a [Homo s... 236 2e-62
Alignment gi|NP_001191812.1| ras-related protein Rab-43 isoform a [Homo s... 236 2e-62
Alignment gi|NP_940892.1| ras-related protein Rab-43 isoform a [Homo sapi... 236 2e-62
Alignment gi|NP_004152.1| ras-related protein Rab-1A isoform 1 [Homo sapi... 184 1e-46
Alignment gi|NP_055303.2| ras-related protein Rab-30 [Homo sapiens]. 180 1e-45
Alignment gi|NP_001191816.1| ras-related protein Rab-43 isoform b [Homo s... 179 4e-45
Alignment gi|NP_057614.1| ras-related protein Rab-8B [Homo sapiens]. 177 1e-44
>ref|NP_001008749.2| ras-related protein Rab-19 [Homo sapiens].
Length = 217
Score = 369 bits (947), Expect = e-102
Identities = 185/217 (85%), Positives = 193/217 (88%), Gaps = 1/217 (0%)
Frame = +3
Query: 144 MQFSSSARAADENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALE 323
M FSSSARAADENFDYLFK+IL+GDSNVGKTCVVQHFKSGVYTE QQNTIGVDFTVR+L+
Sbjct: 1 MHFSSSARAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD 60
Query: 324 IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGA 503
IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFES+PHWIHEIEKYGA
Sbjct: 61 IDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGA 120
Query: 504 ANLVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELI 683
AN+VIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNI+EVFVLMA+ELI
Sbjct: 121 ANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELI 180
Query: 684 ARNSLPLYAEGA-XXXXXXXXXXXXXXXXREKTQCTC 791
ARNSL LY E A EKT CTC
Sbjct: 181 ARNSLHLYGESALNGLPLDSSPVLMAQGPSEKTHCTC 217
>ref|NP_001191815.1| ras-related protein Rab-43 isoform a [Homo sapiens].
Length = 212
Score = 236 bits (603), Expect = 2e-62
Identities = 110/180 (61%), Positives = 147/180 (81%)
Frame = +3
Query: 174 DENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQV 353
DE +D+LFK++LVGD++VGKTCVVQ FK+G ++E Q +TIGVDFT++ LEI GK+VK+Q+
Sbjct: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 71
Query: 354 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGN 533
WDTAGQERFRTITQSYYRSA+ AI+AYD+T+RS+F SVPHWI ++ KY +N+V +LIGN
Sbjct: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 131
Query: 534 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARNSLPLYAE 713
K DL E R V +A +LAE Y +L +ETSAK+S N++E F+ +A ELI R+ PL++E
Sbjct: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSE 191
>ref|NP_001191814.1| ras-related protein Rab-43 isoform a [Homo sapiens].
Length = 212
Score = 236 bits (603), Expect = 2e-62
Identities = 110/180 (61%), Positives = 147/180 (81%)
Frame = +3
Query: 174 DENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQV 353
DE +D+LFK++LVGD++VGKTCVVQ FK+G ++E Q +TIGVDFT++ LEI GK+VK+Q+
Sbjct: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 71
Query: 354 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGN 533
WDTAGQERFRTITQSYYRSA+ AI+AYD+T+RS+F SVPHWI ++ KY +N+V +LIGN
Sbjct: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 131
Query: 534 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARNSLPLYAE 713
K DL E R V +A +LAE Y +L +ETSAK+S N++E F+ +A ELI R+ PL++E
Sbjct: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSE 191
>ref|NP_001191813.1| ras-related protein Rab-43 isoform a [Homo sapiens].
Length = 212
Score = 236 bits (603), Expect = 2e-62
Identities = 110/180 (61%), Positives = 147/180 (81%)
Frame = +3
Query: 174 DENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQV 353
DE +D+LFK++LVGD++VGKTCVVQ FK+G ++E Q +TIGVDFT++ LEI GK+VK+Q+
Sbjct: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 71
Query: 354 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGN 533
WDTAGQERFRTITQSYYRSA+ AI+AYD+T+RS+F SVPHWI ++ KY +N+V +LIGN
Sbjct: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 131
Query: 534 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARNSLPLYAE 713
K DL E R V +A +LAE Y +L +ETSAK+S N++E F+ +A ELI R+ PL++E
Sbjct: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSE 191
>ref|NP_001191812.1| ras-related protein Rab-43 isoform a [Homo sapiens].
Length = 212
Score = 236 bits (603), Expect = 2e-62
Identities = 110/180 (61%), Positives = 147/180 (81%)
Frame = +3
Query: 174 DENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQV 353
DE +D+LFK++LVGD++VGKTCVVQ FK+G ++E Q +TIGVDFT++ LEI GK+VK+Q+
Sbjct: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 71
Query: 354 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGN 533
WDTAGQERFRTITQSYYRSA+ AI+AYD+T+RS+F SVPHWI ++ KY +N+V +LIGN
Sbjct: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 131
Query: 534 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARNSLPLYAE 713
K DL E R V +A +LAE Y +L +ETSAK+S N++E F+ +A ELI R+ PL++E
Sbjct: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSE 191
>ref|NP_940892.1| ras-related protein Rab-43 isoform a [Homo sapiens].
Length = 212
Score = 236 bits (603), Expect = 2e-62
Identities = 110/180 (61%), Positives = 147/180 (81%)
Frame = +3
Query: 174 DENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQV 353
DE +D+LFK++LVGD++VGKTCVVQ FK+G ++E Q +TIGVDFT++ LEI GK+VK+Q+
Sbjct: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 71
Query: 354 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGN 533
WDTAGQERFRTITQSYYRSA+ AI+AYD+T+RS+F SVPHWI ++ KY +N+V +LIGN
Sbjct: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 131
Query: 534 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARNSLPLYAE 713
K DL E R V +A +LAE Y +L +ETSAK+S N++E F+ +A ELI R+ PL++E
Sbjct: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSE 191
>ref|NP_004152.1| ras-related protein Rab-1A isoform 1 [Homo sapiens].
Length = 205
Score = 184 bits (466), Expect = 1e-46
Identities = 87/179 (48%), Positives = 124/179 (69%)
Frame = +3
Query: 183 FDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVWDT 362
+DYLFK++L+GDS VGK+C++ F YTE+ +TIGVDF +R +E+DGK +K+Q+WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 363 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCD 542
AGQERFRTIT SYYR AH I+ YD+T + +F +V W+ EI++Y + N+ +L+GNKCD
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
Query: 543 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIARNSLPLYAEGA 719
L K+ V + A A+ G + LETSAK + N+++ F+ MA E+ R A GA
Sbjct: 128 LTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA 185
>ref|NP_055303.2| ras-related protein Rab-30 [Homo sapiens].
Length = 203
Score = 180 bits (457), Expect = 1e-45
Identities = 84/170 (49%), Positives = 127/170 (74%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
E++D+LFK++L+G++ VGKTC+V+ F G++ Q TIGVDF ++ +EI+G+KVK+Q+W
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFR+ITQSYYRSA+A I+ YD+T +F +P W+ EIE+Y + ++ +L+GNK
Sbjct: 64 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 123
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIA 686
DL E+R V + A +E + LETSAKES N++++F+ +A LI+
Sbjct: 124 IDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLIS 172
>ref|NP_001191816.1| ras-related protein Rab-43 isoform b [Homo sapiens].
Length = 155
Score = 179 bits (453), Expect = 4e-45
Identities = 79/118 (66%), Positives = 104/118 (88%)
Frame = +3
Query: 174 DENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQV 353
DE +D+LFK++LVGD++VGKTCVVQ FK+G ++E Q +TIGVDFT++ LEI GK+VK+Q+
Sbjct: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 71
Query: 354 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLI 527
WDTAGQERFRTITQSYYRSA+ AI+AYD+T+RS+F SVPHWI ++ KY +N+V +LI
Sbjct: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI 129
>ref|NP_057614.1| ras-related protein Rab-8B [Homo sapiens].
Length = 207
Score = 177 bits (449), Expect = 1e-44
Identities = 79/171 (46%), Positives = 122/171 (71%)
Frame = +3
Query: 177 ENFDYLFKVILVGDSNVGKTCVVQHFKSGVYTEAQQNTIGVDFTVRALEIDGKKVKMQVW 356
+ +DYLFK++L+GDS VGKTC++ F + +TIG+DF +R +E+DGKK+K+Q+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
Query: 357 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 536
DTAGQERFRTIT +YYR A ++ YD+T +F+++ +WI IE++ ++++ M++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
Query: 537 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIDEVFVLMARELIAR 689
CD+ +KR V E LA YG + LETSAK S N++E F +AR+++ +
Sbjct: 123 CDMNDKRQVSKERGEKLAIDYG-IKFLETSAKSSANVEEAFFTLARDIMTK 172
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,994,996
Number of extensions: 1194474
Number of successful extensions: 6214
Number of sequences better than 1.0e-05: 187
Number of HSP's gapped: 6010
Number of HSP's successfully gapped: 188
Length of query: 307
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,934,836
Effective search space: 3061641380
Effective search space used: 3061641380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008858
(922 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 767 0.0
Sscrofa_Chr13 84 2e-13
Sscrofa_Chr14 64 1e-07
>Sscrofa_Chr18
|| Length = 61220071
Score = 767 bits (387), Expect = 0.0
Identities = 393/395 (99%)
Strand = Plus / Plus
Query: 528 gggaacaaatgcgacctgtgggaaaaacggcacgttctgtttgaggatgcctgcacactg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9824286 gggaacaaatgcgacctgtgggaaaaacggcacgttctgtttgaggatgcctgcacactg 9824345
Query: 588 gccgagaaatacggcctcctggctgttttggagacgtccgccaaggagtctaaaaacatc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9824346 gccgagaaatacggcctcctggctgttttggagacgtccgccaaggagtctaaaaacatc 9824405
Query: 648 gacgaggtcttcgtgctgatggccagggagctgatcgcccgcaacagcctgcccttgtac 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9824406 gacgaggtcttcgtgctgatggccagggagctgatcgcccgcaacagcctgcccttgtac 9824465
Query: 708 gcggagggcgccctgagcagcctgcccctagattccagtcccgttctcacggtcagtccg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9824466 gcggagggcgccctgagcagcctgcccctagattccagtcccgttctcacggtcagtccg 9824525
Query: 768 agggagaagacccagtgcacctgctgagaatggtccccaggctgcttgccaccatcagga 827
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9824526 agggagaagacccagtgcacctgctgagaatggtccccaggctgcttgcaaccatcagga 9824585
Query: 828 gccacctgaaaccaaggatgcgggatgagtagaccttggtctgctgagtagactttggac 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9824586 gccacctgaaaccaaggatgcgggatgagtagaccttggtctgctgagtagactttggac 9824645
Query: 888 cccagcgtggactcgccgcacgtccctactccttc 922
||||||||||||||||||||| |||||||||||||
Sbjct: 9824646 cccagcgtggactcgccgcacatccctactccttc 9824680
Score = 410 bits (207), Expect = e-112
Identities = 213/215 (99%)
Strand = Plus / Minus
Query: 130 aggcagccagagtcatgcaattctccagctcagccagggcagcagacgagaactttgact 189
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9884288 aggcagccagagtcatgcaattctccagctcagccagggcagcagatgagaactttgact 9884229
Query: 190 acttgttcaaggtcatcctcgtcggggattccaacgtgggcaagacgtgcgtggtgcagc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9884228 acttgttcaaggtcatcctcgtcggggattccaacgtgggcaagacgtgcgtggtgcagc 9884169
Query: 250 atttcaagtctggggtctacacagaagcacagcagaatacgattggggtggacttcacgg 309
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9884168 atttcaagtctggggtctacacagaagcacagcagaatactattggggtggacttcacgg 9884109
Query: 310 tgcgtgccctggagatcgacggcaagaaagtgaag 344
|||||||||||||||||||||||||||||||||||
Sbjct: 9884108 tgcgtgccctggagatcgacggcaagaaagtgaag 9884074
Score = 363 bits (183), Expect = 1e-97
Identities = 186/187 (99%)
Strand = Plus / Minus
Query: 343 agatgcaggtgtgggacaccgcaggccaggagcgcttccggaccatcacccaaagctact 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9880986 agatgcaggtgtgggacaccgcaggccaggagcgcttccggaccatcacccaaagctact 9880927
Query: 403 accgcagtgcccacgcggccatcattgcctacgacctcacccggcggtccacgttcgagt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9880926 accgcagtgcccacgcggccatcattgcctacgacctcacccggcggtccacgttcgagt 9880867
Query: 463 ctgttccccactggattcacgagatagagaaatacggagcggccaacttggtcattatgc 522
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9880866 ctgttccgcactggattcacgagatagagaaatacggagcggccaacttggtcattatgc 9880807
Query: 523 tgatcgg 529
|||||||
Sbjct: 9880806 tgatcgg 9880800
Score = 248 bits (125), Expect = 5e-63
Identities = 132/133 (99%), Gaps = 1/133 (0%)
Strand = Plus / Minus
Query: 1 cctgacacctggggac-gaactacagttcccaccgagcctcgaggcaggaggaagaagag 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9890721 cctgacacctggggacagaactacagttcccaccgagcctcgaggcaggaggaagaagag 9890662
Query: 60 gcacggaaggccaaagggaaaaccaggagaaagagctggctgaggtgggagaggcagaca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9890661 gcacggaaggccaaagggaaaaccaggagaaagagctggctgaggtgggagaggcagaca 9890602
Query: 120 ggtacgcaacagg 132
|||||||||||||
Sbjct: 9890601 ggtacgcaacagg 9890589
>Sscrofa_Chr13
|| Length = 218635234
Score = 83.8 bits (42), Expect = 2e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 354 tgggacaccgcaggccaggagcgcttccggaccatcacccaaagctactaccgcagtgcc 413
|||||||| || ||||||||||| ||||| |||||||| || |||||||||||||| |||
Sbjct: 79175852 tgggacacagctggccaggagcgattccgcaccatcacgcagagctactaccgcagcgcc 79175793
Query: 414 cacgcggccatcattgcctacgacctcacc 443
||| ||||||| | ||||||||| |||||
Sbjct: 79175792 aacggggccatcctggcctacgacatcacc 79175763
>Sscrofa_Chr14
|| Length = 153851969
Score = 63.9 bits (32), Expect = 1e-07
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 321 gagatcgacggcaagaaagtgaagatgcaggtgtgggacaccgcaggccaggagcgcttc 380
|||||| |||| ||||||||||| ||||| | |||||||| || || ||||||||||||
Sbjct: 42694588 gagatcaacggggagaaagtgaagctgcagatctgggacacggctgggcaggagcgcttc 42694529
Query: 381 cggaccatcacc 392
|| |||||||||
Sbjct: 42694528 cgcaccatcacc 42694517
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,618,983
Number of extensions: 142
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 6
Length of query: 922
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 901
Effective length of database: 2,808,413,156
Effective search space: 2530380253556
Effective search space used: 2530380253556
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)