Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008859
(1022 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686331.1| PREDICTED: zinc finger, HIT type 6 [Bos taur... 283 1e-76
Alignment gi|XP_873173.2| PREDICTED: zinc finger, HIT type 6 [Bos taurus]. 283 1e-76
>ref|XP_002686331.1| PREDICTED: zinc finger, HIT type 6 [Bos taurus].
Length = 470
Score = 283 bits (725), Expect = 1e-76
Identities = 163/284 (57%), Positives = 179/284 (63%), Gaps = 1/284 (0%)
Frame = +3
Query: 174 MDFAAENEETSGGG-QSGAEGARLGLESDGERVRXXXXXXXXXXXXXXXXXXXXXXXXXX 350
MDFAAE+EE SGGG QS AEGARL L++D ERVR
Sbjct: 1 MDFAAESEEMSGGGLQSEAEGARLSLDTDQERVRTEESGDGEAENGLTGMEKTRAGEEES 60
Query: 351 XXXXXXXXMRVDLTVVKQEVVDWSETEQGVLNDPWAKQEVEDGPEVKEEKPGTLEVKQET 530
MR+DLTVVKQEV+DWSE +G LN W KQE ED EVKEEKPGTLEVK+E
Sbjct: 61 RRRAEE--MRMDLTVVKQEVMDWSEMVEGTLNGQWVKQE-EDRHEVKEEKPGTLEVKEEM 117
Query: 531 DSNLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEIKREEVFLGQNIKTEERV 710
DS+LMV LEIKREEV L QNIK EE +
Sbjct: 118 DSSLMVKEEKVEETEIKEEKVKVKEEVMDWLEVKEEKKDILEIKREEVSLDQNIKKEEIM 177
Query: 711 DGMCXXXXXXXXXXXXMADAQVKEEPQMHPPVGSKRKLAMSRCETCGTEEAKYRCPRCMR 890
D M + +VKEEPQ++P VGSKRKLAMSRCETCGTEEAKYRCPRC+R
Sbjct: 178 DEMYVKEEKYFPKEEMVDYTKVKEEPQINPSVGSKRKLAMSRCETCGTEEAKYRCPRCLR 237
Query: 891 HSCSLPCVKKHKADLTCNGVRDKTAYVSIQQFTEMNLLSDYRFL 1022
+SCSLPCVKKHKA+LTCNGVRDKTAYVSIQQFTEMNLLSDYRFL
Sbjct: 238 YSCSLPCVKKHKAELTCNGVRDKTAYVSIQQFTEMNLLSDYRFL 281
>ref|XP_873173.2| PREDICTED: zinc finger, HIT type 6 [Bos taurus].
Length = 470
Score = 283 bits (725), Expect = 1e-76
Identities = 163/284 (57%), Positives = 179/284 (63%), Gaps = 1/284 (0%)
Frame = +3
Query: 174 MDFAAENEETSGGG-QSGAEGARLGLESDGERVRXXXXXXXXXXXXXXXXXXXXXXXXXX 350
MDFAAE+EE SGGG QS AEGARL L++D ERVR
Sbjct: 1 MDFAAESEEMSGGGLQSEAEGARLSLDTDQERVRTEESGDGEAENGLTGMEKTRAGEEES 60
Query: 351 XXXXXXXXMRVDLTVVKQEVVDWSETEQGVLNDPWAKQEVEDGPEVKEEKPGTLEVKQET 530
MR+DLTVVKQEV+DWSE +G LN W KQE ED EVKEEKPGTLEVK+E
Sbjct: 61 RRRAEE--MRMDLTVVKQEVMDWSEMVEGTLNGQWVKQE-EDRHEVKEEKPGTLEVKEEM 117
Query: 531 DSNLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEIKREEVFLGQNIKTEERV 710
DS+LMV LEIKREEV L QNIK EE +
Sbjct: 118 DSSLMVKEEKVEETEIKEEKVKVKEEVMDWLEVKEEKKDILEIKREEVSLDQNIKKEEIM 177
Query: 711 DGMCXXXXXXXXXXXXMADAQVKEEPQMHPPVGSKRKLAMSRCETCGTEEAKYRCPRCMR 890
D M + +VKEEPQ++P VGSKRKLAMSRCETCGTEEAKYRCPRC+R
Sbjct: 178 DEMYVKEEKYFPKEEMVDYTKVKEEPQINPSVGSKRKLAMSRCETCGTEEAKYRCPRCLR 237
Query: 891 HSCSLPCVKKHKADLTCNGVRDKTAYVSIQQFTEMNLLSDYRFL 1022
+SCSLPCVKKHKA+LTCNGVRDKTAYVSIQQFTEMNLLSDYRFL
Sbjct: 238 YSCSLPCVKKHKAELTCNGVRDKTAYVSIQQFTEMNLLSDYRFL 281
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,413,112
Number of extensions: 908990
Number of successful extensions: 3922
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3898
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008859
(1022 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537090.2| PREDICTED: similar to CG1463-PA [Canis familiar... 273 3e-73
>ref|XP_537090.2| PREDICTED: similar to CG1463-PA [Canis familiaris].
Length = 468
Score = 273 bits (697), Expect = 3e-73
Identities = 156/284 (54%), Positives = 171/284 (60%), Gaps = 1/284 (0%)
Frame = +3
Query: 174 MDFAAENEETSGGG-QSGAEGARLGLESDGERVRXXXXXXXXXXXXXXXXXXXXXXXXXX 350
MD A E+E T GGG QSGAEGARL L SD ERV
Sbjct: 1 MDIAVEDEGTLGGGLQSGAEGARLRLASDRERVGGTAVTEVGSVGAGNGLAGVEKAEDGE 60
Query: 351 XXXXXXXXMRVDLTVVKQEVVDWSETEQGVLNDPWAKQEVEDGPEVKEEKPGTLEVKQET 530
MRVDLTVVKQEV+DWSE E+G W KQE ED PEVKEEKPG EVKQE
Sbjct: 61 RSGQKAEEMRVDLTVVKQEVLDWSEMEEG----RWVKQEAEDAPEVKEEKPGVSEVKQEM 116
Query: 531 DSNLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEIKREEVFLGQNIKTEERV 710
D + V +LEIK EE F+ QNIK EE +
Sbjct: 117 DGSFEVKEEKGSEAEVKEEKVKVKEEVMDWLDVKEEKKGNLEIK-EEAFVTQNIKKEEMM 175
Query: 711 DGMCXXXXXXXXXXXXMADAQVKEEPQMHPPVGSKRKLAMSRCETCGTEEAKYRCPRCMR 890
D + M DA+VKEEP+++PP G KRKLAMSRCETCGTEEAKY+CPRCMR
Sbjct: 176 DEVNVKEEKYLPKEEVMDDAKVKEEPRVNPPAGFKRKLAMSRCETCGTEEAKYKCPRCMR 235
Query: 891 HSCSLPCVKKHKADLTCNGVRDKTAYVSIQQFTEMNLLSDYRFL 1022
+SCSLPCVKKHKA+LTCNGVRDKTAYVSIQQFTEMNLLSDYRFL
Sbjct: 236 YSCSLPCVKKHKAELTCNGVRDKTAYVSIQQFTEMNLLSDYRFL 279
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,255,584
Number of extensions: 836100
Number of successful extensions: 3875
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3862
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008859
(1022 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230378.1| box C/D snoRNA protein 1 [Sus scrofa]. 387 e-108
>ref|NP_001230378.1| box C/D snoRNA protein 1 [Sus scrofa].
Length = 461
Score = 387 bits (995), Expect = e-108
Identities = 204/283 (72%), Positives = 204/283 (72%)
Frame = +3
Query: 174 MDFAAENEETSGGGQSGAEGARLGLESDGERVRXXXXXXXXXXXXXXXXXXXXXXXXXXX 353
MDFAAENEETSGGGQSGAEGARLGLESDGERVR
Sbjct: 1 MDFAAENEETSGGGQSGAEGARLGLESDGERVRGTGGTEEAGGGEAGSALDGTGKIGEGA 60
Query: 354 XXXXXXXMRVDLTVVKQEVVDWSETEQGVLNDPWAKQEVEDGPEVKEEKPGTLEVKQETD 533
MRVDLTVVKQEVVDWSETEQGVLNDPWAKQEVEDGPEVKEEKPGTLEVKQETD
Sbjct: 61 GGGRRAGMRVDLTVVKQEVVDWSETEQGVLNDPWAKQEVEDGPEVKEEKPGTLEVKQETD 120
Query: 534 SNLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEIKREEVFLGQNIKTEERVD 713
SNLMV SLEIKREEVFLGQNIKTEERVD
Sbjct: 121 SNLMVKEEEEEEPEVKEEKVKVKEEVTDWLEVTEEKKDSLEIKREEVFLGQNIKTEERVD 180
Query: 714 GMCXXXXXXXXXXXXMADAQVKEEPQMHPPVGSKRKLAMSRCETCGTEEAKYRCPRCMRH 893
GMC MADAQVKEEPQMHPPVGSKRKLAMSRCETCGTEEAKYRCPRCMRH
Sbjct: 181 GMCVKEEKNVPKEEVMADAQVKEEPQMHPPVGSKRKLAMSRCETCGTEEAKYRCPRCMRH 240
Query: 894 SCSLPCVKKHKADLTCNGVRDKTAYVSIQQFTEMNLLSDYRFL 1022
SCSLPCVKKHKADLTCNGVRDKTAYVSIQQFTEMNLLSDYRFL
Sbjct: 241 SCSLPCVKKHKADLTCNGVRDKTAYVSIQQFTEMNLLSDYRFL 283
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,711,713
Number of extensions: 716819
Number of successful extensions: 2508
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2497
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008859
(1022 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074563.1| box C/D snoRNA protein 1 [Mus musculus]. 246 3e-65
>ref|NP_001074563.1| box C/D snoRNA protein 1 [Mus musculus].
Length = 460
Score = 246 bits (627), Expect = 3e-65
Identities = 147/284 (51%), Positives = 169/284 (59%), Gaps = 1/284 (0%)
Frame = +3
Query: 174 MDFAAENEETSGGG-QSGAEGARLGLESDGERVRXXXXXXXXXXXXXXXXXXXXXXXXXX 350
M+ AAE E T GGG Q AEGAR + GE R
Sbjct: 1 MESAAEKEGTPGGGSQRVAEGARPRPAAGGEGARDLDGSPEAGDGEERNGLAGTKTTEDA 60
Query: 351 XXXXXXXXMRVDLTVVKQEVVDWSETEQGVLNDPWAKQEVEDGPEVKEEKPGTLEVKQET 530
+++DL VVKQEVVDWS+ + GV + W KQEVE GPEVK+EK G LEVKQE
Sbjct: 61 EE------IKMDLAVVKQEVVDWSDLDSGVADSQWVKQEVEGGPEVKDEK-GVLEVKQEA 113
Query: 531 DSNLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEIKREEVFLGQNIKTEERV 710
DS+L+V L IK +E+F+GQN+K E+ +
Sbjct: 114 DSSLVVKEEEVDEPEVKEEKVKVKEEVTDWEEVKEE---DLTIK-QELFVGQNVKEEQVM 169
Query: 711 DGMCXXXXXXXXXXXXMADAQVKEEPQMHPPVGSKRKLAMSRCETCGTEEAKYRCPRCMR 890
D M DA+VKEEPQM+P VGSKRKLA+SRCETCGTEEAKYRCPRCMR
Sbjct: 170 DA-APIKEEGSLKSEAMEDAKVKEEPQMNPRVGSKRKLALSRCETCGTEEAKYRCPRCMR 228
Query: 891 HSCSLPCVKKHKADLTCNGVRDKTAYVSIQQFTEMNLLSDYRFL 1022
SCSLPCVKKHKADLTC+GVRDKTAYVS+QQFTEMNLLSDYRFL
Sbjct: 229 FSCSLPCVKKHKADLTCSGVRDKTAYVSLQQFTEMNLLSDYRFL 272
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,712,052
Number of extensions: 698757
Number of successful extensions: 3555
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3544
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008859
(1022 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060423.3| box C/D snoRNA protein 1 isoform 1 [Homo sapien... 250 2e-66
Alignment gi|NP_001164141.1| box C/D snoRNA protein 1 isoform 2 [Homo sap... 205 5e-53
>ref|NP_060423.3| box C/D snoRNA protein 1 isoform 1 [Homo sapiens].
Length = 470
Score = 250 bits (638), Expect = 2e-66
Identities = 149/286 (52%), Positives = 168/286 (58%), Gaps = 3/286 (1%)
Frame = +3
Query: 174 MDFAAENEETSGGG-QSGAEGARLGLESDGERVRXXXXXXXXXXXXXXXXXXXXXXXXXX 350
M+FAAENE SGGG S AEG RL E E VR
Sbjct: 1 MEFAAENEGKSGGGLHSVAEGVRLSPEPGREGVRDLAGAEEFGGGEEGTGLTGIKEIGDG 60
Query: 351 XXXXXXXXMRV--DLTVVKQEVVDWSETEQGVLNDPWAKQEVEDGPEVKEEKPGTLEVKQ 524
+ DLTVVKQE++DW TE G L W +QEVED PEVK+E G LEVKQ
Sbjct: 61 EEGSGQRPEEIPMDLTVVKQEIIDWPGTE-GRLAGQWVEQEVEDRPEVKDENAGVLEVKQ 119
Query: 525 ETDSNLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEIKREEVFLGQNIKTEE 704
ETDS+L+V +LEIK+EE F+GQ IK EE
Sbjct: 120 ETDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKD---NLEIKQEEKFVGQCIK-EE 175
Query: 705 RVDGMCXXXXXXXXXXXXMADAQVKEEPQMHPPVGSKRKLAMSRCETCGTEEAKYRCPRC 884
+ G C + D +VKEEP ++ PVG KRKLAMSRCETCGTEEAKYRCPRC
Sbjct: 176 LMHGECVKEEKDFLKKEIVDDTKVKEEPPINHPVGCKRKLAMSRCETCGTEEAKYRCPRC 235
Query: 885 MRHSCSLPCVKKHKADLTCNGVRDKTAYVSIQQFTEMNLLSDYRFL 1022
MR+SCSLPCVKKHKA+LTCNGVRDKTAY+SIQQFTEMNLLSDYRFL
Sbjct: 236 MRYSCSLPCVKKHKAELTCNGVRDKTAYISIQQFTEMNLLSDYRFL 281
>ref|NP_001164141.1| box C/D snoRNA protein 1 isoform 2 [Homo sapiens].
Length = 431
Score = 205 bits (522), Expect = 5e-53
Identities = 132/286 (46%), Positives = 152/286 (53%), Gaps = 3/286 (1%)
Frame = +3
Query: 174 MDFAAENEETSGGG-QSGAEGARLGLESDGERVRXXXXXXXXXXXXXXXXXXXXXXXXXX 350
M+FAAENE SGGG S AEG RL E E VR
Sbjct: 1 MEFAAENEGKSGGGLHSVAEGVRLSPEPGREGVRDLAGAEEFGGGEEGTGLTGIKEIGDG 60
Query: 351 XXXXXXXXMRV--DLTVVKQEVVDWSETEQGVLNDPWAKQEVEDGPEVKEEKPGTLEVKQ 524
+ DLTVVKQE ++ + +P K+E +VKEE EVK+
Sbjct: 61 EEGSGQRPEEIPMDLTVVKQETDSSLVVKEAKVGEPEVKEE-----KVKEEVMDWSEVKE 115
Query: 525 ETDSNLMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEIKREEVFLGQNIKTEE 704
E D+ LEIK+EE F+GQ IK EE
Sbjct: 116 EKDN--------------------------------------LEIKQEEKFVGQCIK-EE 136
Query: 705 RVDGMCXXXXXXXXXXXXMADAQVKEEPQMHPPVGSKRKLAMSRCETCGTEEAKYRCPRC 884
+ G C + D +VKEEP ++ PVG KRKLAMSRCETCGTEEAKYRCPRC
Sbjct: 137 LMHGECVKEEKDFLKKEIVDDTKVKEEPPINHPVGCKRKLAMSRCETCGTEEAKYRCPRC 196
Query: 885 MRHSCSLPCVKKHKADLTCNGVRDKTAYVSIQQFTEMNLLSDYRFL 1022
MR+SCSLPCVKKHKA+LTCNGVRDKTAY+SIQQFTEMNLLSDYRFL
Sbjct: 197 MRYSCSLPCVKKHKAELTCNGVRDKTAYISIQQFTEMNLLSDYRFL 242
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,647,787
Number of extensions: 822988
Number of successful extensions: 4019
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4010
Number of HSP's successfully gapped: 6
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008859
(1022 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1088 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1088 bits (549), Expect = 0.0
Identities = 549/549 (100%)
Strand = Plus / Plus
Query: 1 gcgttgctttacgactattcgagcagaggctcggggccggcgtctgccgctcgctttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666130 gcgttgctttacgactattcgagcagaggctcggggccggcgtctgccgctcgctttttc 142666189
Query: 61 tggggtccacacgtgggccgcggtcggtgttctggccggtagttcgtacctgttggcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666190 tggggtccacacgtgggccgcggtcggtgttctggccggtagttcgtacctgttggcttg 142666249
Query: 121 gacgagccacattgaaggacagagtattggcggaagtcaaagatccggagctgatggatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666250 gacgagccacattgaaggacagagtattggcggaagtcaaagatccggagctgatggatt 142666309
Query: 181 tcgctgctgaaaatgaagagacgtcgggaggaggtcagagcggagctgagggggcgcggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666310 tcgctgctgaaaatgaagagacgtcgggaggaggtcagagcggagctgagggggcgcggc 142666369
Query: 241 taggtctggagtccgatggagagagagtccggggcaccggagggaccgaggaggctggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666370 taggtctggagtccgatggagagagagtccggggcaccggagggaccgaggaggctggag 142666429
Query: 301 gtggggaggcggggagtgcactggacggaacggggaagataggggaaggcgcaggaggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666430 gtggggaggcggggagtgcactggacggaacggggaagataggggaaggcgcaggaggtg 142666489
Query: 361 gacgaagggcagggatgcgggtggacctaacggtcgtgaagcaggaagtagtggactggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666490 gacgaagggcagggatgcgggtggacctaacggtcgtgaagcaggaagtagtggactggt 142666549
Query: 421 cagaaacggaacaaggtgtgttgaatgacccgtgggcgaagcaggaggtggaggacgggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666550 cagaaacggaacaaggtgtgttgaatgacccgtgggcgaagcaggaggtggaggacgggc 142666609
Query: 481 ccgaggtgaaagaggaaaaaccaggcaccctggaggtgaagcaggagacggatagcaatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666610 ccgaggtgaaagaggaaaaaccaggcaccctggaggtgaagcaggagacggatagcaatc 142666669
Query: 541 tgatggtaa 549
|||||||||
Sbjct: 142666670 tgatggtaa 142666678
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 647 cagcttggagattaaacgggaggaggtgtttctaggtcagaacataaaaacggaggaaag 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666776 cagcttggagattaaacgggaggaggtgtttctaggtcagaacataaaaacggaggaaag 142666835
Query: 707 agtggatggaatgtgtgtaaaagaagagaagaatgtcccgaaagaagaggtgatggccga 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666836 agtggatggaatgtgtgtaaaagaagagaagaatgtcccgaaagaagaggtgatggccga 142666895
Query: 767 tgcacaggtgaaagaagagcctcagatgcatcccccagtgggctccaagcggaaactggc 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142666896 tgcacaggtgaaagaagagcctcagatgcatcccccagtgggctccaagcggaaactggc 142666955
Query: 827 catgtccag 835
|||||||||
Sbjct: 142666956 catgtccag 142666964
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 899 cagtttgccctgtgtgaagaaacacaaagcagacctgacgtgtaatggagttcgagataa 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142668251 cagtttgccctgtgtgaagaaacacaaagcagacctgacgtgtaatggagttcgagataa 142668310
Query: 959 aactgcatatgtttcaatacagcagtttactgaaatgaatctcctgagtg 1008
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142668311 aactgcatatgtttcaatacagcagtttactgaaatgaatctcctgagtg 142668360
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 833 cagatgtgaaacttgtggtacagaagaagcaaagtacagatgtccgcgttgtatgcgaca 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142668099 cagatgtgaaacttgtggtacagaagaagcaaagtacagatgtccgcgttgtatgcgaca 142668158
Query: 893 ttcctgcag 901
|||||||||
Sbjct: 142668159 ttcctgcag 142668167
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,015,501
Number of extensions: 156
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 4
Length of query: 1022
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1001
Effective length of database: 2,808,413,156
Effective search space: 2811221569156
Effective search space used: 2811221569156
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)