Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008864
(1131 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002693914.1| PREDICTED: hypothetical protein [Bos taurus]. 199 4e-51
Alignment gi|XP_611589.3| PREDICTED: hypothetical protein [Bos taurus]. 199 4e-51
>ref|XP_002693914.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 144
Score = 199 bits (506), Expect = 4e-51
Identities = 104/145 (71%), Positives = 113/145 (77%), Gaps = 7/145 (4%)
Frame = +1
Query: 229 DQNPLGGLFGKMNWTN-------ETTTTMKPGADPKGLSGLGPTATVLSGSIGVIALILL 387
+Q PLGG GKMN T+ E TT G P S L AT +SGSIGV+ALILL
Sbjct: 2 EQKPLGGPLGKMNLTDHMFQDSSENITTSTSG--PTLPSSLDTAATAVSGSIGVVALILL 59
Query: 388 LMGLMSMPLKKWRHERLFKKQLKHQMNYLHKSSEFSCHADAIYSNVINLAPRKEEDFAVY 567
L+GL+S+ LKKWRHERLFKKQ KHQ N+LHKS E SCHADAIYSNVINLAPRKE+DFAVY
Sbjct: 60 LVGLLSVTLKKWRHERLFKKQQKHQTNFLHKSLELSCHADAIYSNVINLAPRKEDDFAVY 119
Query: 568 ANVPPFNRPRRTSPDQVEYASIVFH 642
ANVPPFNRPRRTSPD VEYASIVFH
Sbjct: 120 ANVPPFNRPRRTSPDHVEYASIVFH 144
>ref|XP_611589.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 144
Score = 199 bits (506), Expect = 4e-51
Identities = 104/145 (71%), Positives = 113/145 (77%), Gaps = 7/145 (4%)
Frame = +1
Query: 229 DQNPLGGLFGKMNWTN-------ETTTTMKPGADPKGLSGLGPTATVLSGSIGVIALILL 387
+Q PLGG GKMN T+ E TT G P S L AT +SGSIGV+ALILL
Sbjct: 2 EQKPLGGPLGKMNLTDHMFQDSSENITTSTSG--PTLPSSLDTAATAVSGSIGVVALILL 59
Query: 388 LMGLMSMPLKKWRHERLFKKQLKHQMNYLHKSSEFSCHADAIYSNVINLAPRKEEDFAVY 567
L+GL+S+ LKKWRHERLFKKQ KHQ N+LHKS E SCHADAIYSNVINLAPRKE+DFAVY
Sbjct: 60 LVGLLSVTLKKWRHERLFKKQQKHQTNFLHKSLELSCHADAIYSNVINLAPRKEDDFAVY 119
Query: 568 ANVPPFNRPRRTSPDQVEYASIVFH 642
ANVPPFNRPRRTSPD VEYASIVFH
Sbjct: 120 ANVPPFNRPRRTSPDHVEYASIVFH 144
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,546,972
Number of extensions: 1384470
Number of successful extensions: 4699
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4691
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,240,222
Effective search space: 3887580606
Effective search space used: 3887580606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008864
(1131 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849056.1| PREDICTED: hypothetical protein XP_843963 [Cani... 189 5e-48
>ref|XP_849056.1| PREDICTED: hypothetical protein XP_843963 [Canis familiaris].
Length = 350
Score = 189 bits (479), Expect = 5e-48
Identities = 90/120 (75%), Positives = 104/120 (86%)
Frame = +1
Query: 274 NETTTTMKPGADPKGLSGLGPTATVLSGSIGVIALILLLMGLMSMPLKKWRHERLFKKQL 453
+E TT+KP P LS LG AT +SGS+GV+ALILLL+GL+SM LKKWRHERLFKKQL
Sbjct: 28 SENFTTLKPETKPDELSSLGTAATAISGSVGVVALILLLVGLLSMTLKKWRHERLFKKQL 87
Query: 454 KHQMNYLHKSSEFSCHADAIYSNVINLAPRKEEDFAVYANVPPFNRPRRTSPDQVEYASI 633
+HQ N+LH++SE SCHADAIYSNVINLA KE+DFAVYANVPPFNRPR+TSPD+VEYASI
Sbjct: 88 RHQTNFLHRTSELSCHADAIYSNVINLASWKEDDFAVYANVPPFNRPRKTSPDRVEYASI 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,156,407
Number of extensions: 1360531
Number of successful extensions: 4760
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4752
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 273
Effective length of database: 15,407,560
Effective search space: 4206263880
Effective search space used: 4206263880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008864
(1131 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357461.1| PREDICTED: hypothetical protein LOC100627879... 240 1e-63
>ref|XP_003357461.1| PREDICTED: hypothetical protein LOC100627879 [Sus scrofa].
Length = 117
Score = 240 bits (612), Expect = 1e-63
Identities = 117/117 (100%), Positives = 117/117 (100%)
Frame = +1
Query: 292 MKPGADPKGLSGLGPTATVLSGSIGVIALILLLMGLMSMPLKKWRHERLFKKQLKHQMNY 471
MKPGADPKGLSGLGPTATVLSGSIGVIALILLLMGLMSMPLKKWRHERLFKKQLKHQMNY
Sbjct: 1 MKPGADPKGLSGLGPTATVLSGSIGVIALILLLMGLMSMPLKKWRHERLFKKQLKHQMNY 60
Query: 472 LHKSSEFSCHADAIYSNVINLAPRKEEDFAVYANVPPFNRPRRTSPDQVEYASIVFH 642
LHKSSEFSCHADAIYSNVINLAPRKEEDFAVYANVPPFNRPRRTSPDQVEYASIVFH
Sbjct: 61 LHKSSEFSCHADAIYSNVINLAPRKEEDFAVYANVPPFNRPRRTSPDQVEYASIVFH 117
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,916,134
Number of extensions: 972138
Number of successful extensions: 3024
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3018
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 276
Effective length of database: 8,829,335
Effective search space: 2436896460
Effective search space used: 2436896460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008864
(1131 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,153,135
Number of extensions: 1118855
Number of successful extensions: 3979
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3970
Number of HSP's successfully gapped: 0
Length of query: 377
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 274
Effective length of database: 12,523,851
Effective search space: 3431535174
Effective search space used: 3431535174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008864
(1131 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,237,043
Number of extensions: 1335932
Number of successful extensions: 4749
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4747
Number of HSP's successfully gapped: 0
Length of query: 377
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,868,908
Effective search space: 4059211884
Effective search space used: 4059211884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008864
(1131 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 484 e-134
>Sscrofa_Chr09
|| Length = 153670197
Score = 484 bits (244), Expect = e-134
Identities = 247/248 (99%)
Strand = Plus / Plus
Query: 786 ctttgaaatgcattaaacttattctgatggagacaagtggctaagtatttcttctcattt 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72972373 ctttgaaatgcattaaacttattctgatggagacaagtggctaagtatttcttctcattt 72972432
Query: 846 attggaagcaaagtgcagctctaatggaaaggagtgacacttgtaagataagggacacaa 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72972433 attggaagcaaagtgcagctctaatggaaaggagtgacacttgtaagataagggacacaa 72972492
Query: 906 tcgttctgagccccttgagctccagaaatgccttcccgagagagactggccaatagcaga 965
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 72972493 tcgttctgagccccttgagctccagaaatgctttcccgagagagactggccaatagcaga 72972552
Query: 966 ggatcccttcttagcttctgcccctcctgaggatagggctgaggagtggagcttctggga 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72972553 ggatcccttcttagcttctgcccctcctgaggatagggctgaggagtggagcttctggga 72972612
Query: 1026 ccagcttc 1033
||||||||
Sbjct: 72972613 ccagcttc 72972620
Score = 470 bits (237), Expect = e-130
Identities = 237/237 (100%)
Strand = Plus / Plus
Query: 486 ggagttttcctgccatgccgatgccatatattccaacgtgatcaacctggcccccaggaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72972091 ggagttttcctgccatgccgatgccatatattccaacgtgatcaacctggcccccaggaa 72972150
Query: 546 ggaggaggacttcgctgtctatgccaacgtgccccctttcaatcgccccagaaggacatc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72972151 ggaggaggacttcgctgtctatgccaacgtgccccctttcaatcgccccagaaggacatc 72972210
Query: 606 cccagaccaagtggaatatgcctccattgtgttccactgatgggaagccaacgagatgct 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72972211 cccagaccaagtggaatatgcctccattgtgttccactgatgggaagccaacgagatgct 72972270
Query: 666 tcagggtggagagtcagacctgtgccctagctggctcacaatgcagcttttgcttta 722
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72972271 tcagggtggagagtcagacctgtgccctagctggctcacaatgcagcttttgcttta 72972327
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 326 gcttaggaccaacagccaccgttctttctggctccatcggtgtcatagccctcatcttgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72971011 gcttaggaccaacagccaccgttctttctggctccatcggtgtcatagccctcatcttgc 72971070
Query: 386 tcctgatggggctcatgtccatgccactgaagaaatggaggcacgagag 434
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72971071 tcctgatggggctcatgtccatgccactgaagaaatggaggcacgagag 72971119
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 tagggtggaggagagcagtgagagcagctgcctcttcaacatggaaggctcctcccgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72893721 tagggtggaggagagcagtgagagcagctgcctcttcaacatggaaggctcctcccgctg 72893780
Query: 61 ctgctgttcgcccaggagacaggt 84
||||||||||||||||||||||||
Sbjct: 72893781 ctgctgttcgcccaggagacaggt 72893804
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 434 gactatttaagaaacaactgaagcatcagatgaactatctccacaaatcctcgg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72971772 gactatttaagaaacaactgaagcatcagatgaactatctccacaaatcctcgg 72971825
Score = 83.8 bits (42), Expect = 2e-13
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 277 gagactaccaccaccatgaagccaggggctgaccctaaaggactcagtgg 326
||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 72970676 gagaccaccacctccatgaagccaggggctgaccctaaaggactcagtgg 72970725
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,953,791
Number of extensions: 321
Number of successful extensions: 321
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 6
Length of query: 1131
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1110
Effective length of database: 2,808,413,156
Effective search space: 3117338603160
Effective search space used: 3117338603160
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)