Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008866
(1021 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070565.1| beta-1,3-galactosyltransferase 4 [Bos taurus]. 266 2e-71
Alignment gi|XP_002685155.1| PREDICTED: UDP-Gal:betaGlcNAc beta 1,3-galac... 99 4e-23
Alignment gi|XP_871608.2| PREDICTED: UDP-Gal:betaGlcNAc beta 1,3-galactos... 99 4e-23
Alignment gi|XP_002690006.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 91 5e-22
Alignment gi|XP_001252680.2| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 91 5e-22
Alignment gi|NP_001069656.1| beta-1,3-galactosyltransferase 2 [Bos taurus]. 101 1e-21
Alignment gi|XP_002685372.1| PREDICTED: UDP-Gal:betaGlcNAc beta 1,3-galac... 100 2e-21
Alignment gi|XP_584336.2| PREDICTED: UDP-Gal:betaGlcNAc beta 1,3-galactos... 100 2e-21
Alignment gi|NP_001070431.1| UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltr... 99 8e-21
Alignment gi|XP_001252556.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 95 9e-20
>ref|NP_001070565.1| beta-1,3-galactosyltransferase 4 [Bos taurus].
Length = 378
Score = 266 bits (681), Expect = 2e-71
Identities = 131/156 (83%), Positives = 137/156 (87%), Gaps = 2/156 (1%)
Frame = +1
Query: 382 IPNEEACGGPGVPPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGG 561
IPNE ACG PG PPFLLILVCTAPDNLNQRNAIRASWGRLRE RGLRVQT+FLLGEP G
Sbjct: 58 IPNEAACGAPGPPPFLLILVCTAPDNLNQRNAIRASWGRLREVRGLRVQTVFLLGEPGWG 117
Query: 562 SRENDLARESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNV 741
SR +DL ESAAHGDI+QAAFQDSYRNLTLKTLSGL+WAD+HCP ARYILKTDDDVFVNV
Sbjct: 118 SRGSDLVWESAAHGDIMQAAFQDSYRNLTLKTLSGLSWADRHCPTARYILKTDDDVFVNV 177
Query: 742 PELVSELVRRGGHWEQWEQ--EPQRKAKVGDEEGGG 843
PELVSELVRRGG WEQWE P RKAK GDE+ G
Sbjct: 178 PELVSELVRRGGRWEQWETGVGPPRKAKAGDEKWDG 213
Score = 114 bits (284), Expect = 2e-25
Identities = 51/76 (67%), Positives = 57/76 (75%)
Frame = +3
Query: 792 GAGAPEKG*XXXXXXXXXXSPTSGSQPVPLLYLGRVHWRVHPSRTPGSRHQIAEEQWPPA 971
G G P K SPT GSQPVPLLYLGRVHWRV PSR+PG +HQ++EEQWPP+
Sbjct: 197 GVGPPRKA--KAGDEKWDGSPTLGSQPVPLLYLGRVHWRVQPSRSPGGKHQVSEEQWPPS 254
Query: 972 WGPFPPYASRTGYLLS 1019
WGPFPPYAS TGY+LS
Sbjct: 255 WGPFPPYASGTGYVLS 270
>ref|XP_002685155.1| PREDICTED: UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5-like
[Bos taurus].
Length = 311
Score = 99.4 bits (246), Expect(2) = 4e-23
Identities = 46/118 (38%), Positives = 72/118 (61%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAA 597
PPFL++LV ++ + R IR++WG+ + +G R++T FLLG ++A+ES
Sbjct: 57 PPFLILLVASSHEQWFVRLVIRSTWGKEKIIKGKRIKTFFLLGTSPSKHISREVAKESQK 116
Query: 598 HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRR 771
DI+Q F D Y NLTLKT+ G+ W CP +++KTD D+FVN+ L L+++
Sbjct: 117 FRDIIQKDFTDDYFNLTLKTMMGMQWIYSFCPQTTFVMKTDSDMFVNIYYLTELLLKK 174
Score = 27.7 bits (60), Expect(2) = 4e-23
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 885 YLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
+ G + +P R ++ +++ ++P W +PP+ S TGY+ S
Sbjct: 181 FTGFLKLNEYPIRKRFNKWFVSKYEYP--WDKYPPFCSGTGYVFS 223
>ref|XP_871608.2| PREDICTED: UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 [Bos
taurus].
Length = 311
Score = 99.4 bits (246), Expect(2) = 4e-23
Identities = 46/118 (38%), Positives = 72/118 (61%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAA 597
PPFL++LV ++ + R IR++WG+ + +G R++T FLLG ++A+ES
Sbjct: 57 PPFLILLVASSHEQWFVRLVIRSTWGKEKIIKGKRIKTFFLLGTSPSKHISREVAKESQK 116
Query: 598 HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRR 771
DI+Q F D Y NLTLKT+ G+ W CP +++KTD D+FVN+ L L+++
Sbjct: 117 FRDIIQKDFTDDYFNLTLKTMMGMQWIYSFCPQTTFVMKTDSDMFVNIYYLTELLLKK 174
Score = 27.7 bits (60), Expect(2) = 4e-23
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 885 YLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
+ G + +P R ++ +++ ++P W +PP+ S TGY+ S
Sbjct: 181 FTGFLKLNEYPIRKRFNKWFVSKYEYP--WDKYPPFCSGTGYVFS 223
>ref|XP_002690006.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 5-like [Bos
taurus].
Length = 510
Score = 91.3 bits (225), Expect(2) = 5e-22
Identities = 48/135 (35%), Positives = 74/135 (54%)
Frame = +1
Query: 382 IPNEEACGGPGVPPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGG 561
+ E C G V FLL L+ ++P+N +R+ IR +WG + G + TLF LG P
Sbjct: 214 LSQSEVCKGKSV--FLLSLIFSSPENGTRRDLIRKTWGNVTSVGGHPILTLFALGMPVLV 271
Query: 562 SRENDLARESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNV 741
+ + ++ +E + DI+ DS N TLK ++ WA CP A ++LK D+++FVN+
Sbjct: 272 TTQQEIDKEPQKNNDIIGGILLDSAENQTLKIIAMTQWAVAFCPNALFVLKVDEEMFVNI 331
Query: 742 PELVSELVRRGGHWE 786
P LV L+ H E
Sbjct: 332 PSLVDYLLNLKEHVE 346
Score = 32.0 bits (71), Expect(2) = 5e-22
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 882 LYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
+Y+GRV + P+R P S+ + Q+P + +P Y SR +++S
Sbjct: 348 IYVGRVIHQDTPNRDPNSQEFVPFSQYPEKY--YPDYCSREAFVMS 391
>ref|XP_001252680.2| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 5-like [Bos
taurus].
Length = 510
Score = 91.3 bits (225), Expect(2) = 5e-22
Identities = 48/135 (35%), Positives = 74/135 (54%)
Frame = +1
Query: 382 IPNEEACGGPGVPPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGG 561
+ E C G V FLL L+ ++P+N +R+ IR +WG + G + TLF LG P
Sbjct: 214 LSQSEVCKGKSV--FLLSLIFSSPENGTRRDLIRKTWGNVTSVGGHPILTLFALGMPVLV 271
Query: 562 SRENDLARESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNV 741
+ + ++ +E + DI+ DS N TLK ++ WA CP A ++LK D+++FVN+
Sbjct: 272 TTQQEIDKEPQKNNDIIGGILLDSAENQTLKIIAMTQWAVAFCPNALFVLKVDEEMFVNI 331
Query: 742 PELVSELVRRGGHWE 786
P LV L+ H E
Sbjct: 332 PSLVDYLLNLKEHVE 346
Score = 32.0 bits (71), Expect(2) = 5e-22
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 882 LYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
+Y+GRV + P+R P S+ + Q+P + +P Y SR +++S
Sbjct: 348 IYVGRVIHQDTPNRDPNSQEFVPFSQYPEKY--YPDYCSREAFVMS 391
>ref|NP_001069656.1| beta-1,3-galactosyltransferase 2 [Bos taurus].
Length = 422
Score = 101 bits (251), Expect = 1e-21
Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEP--SGGSRENDLARESA 594
PFL++L+ P + R AIR +WG A G+++ +FLLG S G + + ES
Sbjct: 151 PFLILLIAAEPGQIEARRAIRQTWGNESLAPGIQITRIFLLGVSIKSSGYLQRAILEESR 210
Query: 595 AHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVR 768
+ DI+Q + D+Y NLT+KTL G+NW +CP Y++KTD D+FVN L+ +L++
Sbjct: 211 QYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPRIPYVMKTDSDMFVNTEYLIHKLLK 268
>ref|XP_002685372.1| PREDICTED: UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase,
polypeptide 1 [Bos taurus].
Length = 326
Score = 100 bits (250), Expect = 2e-21
Identities = 48/116 (41%), Positives = 71/116 (61%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAAH 600
PFL+IL+ T + R AIR +WG +G+++ TLFLLG+ + + +ES
Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIF 137
Query: 601 GDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVR 768
DI+ F DSY NLTLKTL G+ W C A+Y++KTD D+FVN+ L+ +L++
Sbjct: 138 HDIIVEDFIDSYHNLTLKTLMGMRWVATFCAKAKYVMKTDSDIFVNMDNLIYKLLK 193
>ref|XP_584336.2| PREDICTED: UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 [Bos
taurus].
Length = 326
Score = 100 bits (250), Expect = 2e-21
Identities = 48/116 (41%), Positives = 71/116 (61%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAAH 600
PFL+IL+ T + R AIR +WG +G+++ TLFLLG+ + + +ES
Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIF 137
Query: 601 GDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVR 768
DI+ F DSY NLTLKTL G+ W C A+Y++KTD D+FVN+ L+ +L++
Sbjct: 138 HDIIVEDFIDSYHNLTLKTLMGMRWVATFCAKAKYVMKTDSDIFVNMDNLIYKLLK 193
>ref|NP_001070431.1| UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 [Bos
taurus].
Length = 331
Score = 98.6 bits (244), Expect = 8e-21
Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSREN---DLARES 591
PFL+ILV + P ++ R AIR +WG + G V T FLLG+ + + L E
Sbjct: 78 PFLVILVTSHPSDVKARQAIRVTWGEKKSWWGYEVLTFFLLGQQAEKEDKMLALSLEDEH 137
Query: 592 AAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELV 765
+GDI++ F D+Y NLTLKT+ W + CP ARYI+KTD DVF+N LV L+
Sbjct: 138 LLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNARYIMKTDTDVFINTGNLVKYLL 195
>ref|XP_001252556.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 6 (core 3
synthase)-like [Bos taurus].
Length = 379
Score = 95.1 bits (235), Expect = 9e-20
Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 6/117 (5%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPS--GGSRENDLAR--- 585
PFLL+ V +AP N +R IR +WG+ R G V+ LFLLG P+ R LA
Sbjct: 112 PFLLLAVKSAPANFERRELIRRTWGQERSYGGRPVRRLFLLGTPAPEDAERAEQLAELAA 171
Query: 586 -ESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELV 753
E+ HGD++Q AF D++ NLTLK + L+W + CP AR++L DDDVFV+ ++
Sbjct: 172 LEAREHGDVLQWAFTDTFLNLTLKQVHLLDWLEARCPHARFLLSGDDDVFVHTANVL 228
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,288,112
Number of extensions: 1190462
Number of successful extensions: 7102
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 7048
Number of HSP's successfully gapped: 34
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008866
(1021 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074191.1| beta-1,3-galactosyltransferase 4 [Canis lupu... 253 2e-94
Alignment gi|XP_544891.2| PREDICTED: similar to Beta-1,3-galactosyltransf... 103 2e-22
Alignment gi|XP_545508.2| PREDICTED: similar to Beta-1,3-galactosyltransf... 100 2e-21
Alignment gi|XP_849233.1| PREDICTED: similar to UDP-Gal:betaGlcNAc beta 1... 97 2e-20
Alignment gi|XP_541947.1| PREDICTED: similar to UDP-GlcNAc:betaGal beta-1... 93 1e-19
Alignment gi|XP_542294.2| PREDICTED: similar to beta-1,3-N-acetylglucosam... 90 4e-18
Alignment gi|XP_546887.2| PREDICTED: similar to UDP-GlcNAc:betaGal beta-1... 86 6e-17
Alignment gi|XP_543284.2| PREDICTED: similar to UDP-GlcNAc:betaGal beta-1... 83 4e-16
Alignment gi|XP_543380.2| PREDICTED: similar to beta-1,3-N-acetylglucosam... 82 6e-16
Alignment gi|XP_531841.1| PREDICTED: similar to UDP-GlcNAc:betaGal beta-1... 77 8e-16
>ref|NP_001074191.1| beta-1,3-galactosyltransferase 4 [Canis lupus familiaris].
Length = 383
Score = 253 bits (647), Expect(2) = 2e-94
Identities = 132/199 (66%), Positives = 142/199 (71%), Gaps = 7/199 (3%)
Frame = +1
Query: 259 VIIWTLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPNEEACGGPGVPPFLLIL 438
VIIWTLF IPNE+ACGGPG PPFLLIL
Sbjct: 17 VIIWTLFGPSGIGEELLSLSLASLSPAPASPGPPLALPRLLIPNEKACGGPGSPPFLLIL 76
Query: 439 VCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPS-----GGSRENDLARESAAHG 603
VCTAP+NLNQRNAIRASWG LREA+G RVQ LFLLGEPS + DL RE+AA G
Sbjct: 77 VCTAPENLNQRNAIRASWGGLREAQGFRVQILFLLGEPSLWHPTKEPHDIDLVREAAAQG 136
Query: 604 DIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRRGGHW 783
DI+QAAF+DSYRNLTLKTLSGLNWADKHC MARYILKTDDDVFVNVPELVSEL+RRGGHW
Sbjct: 137 DILQAAFRDSYRNLTLKTLSGLNWADKHCSMARYILKTDDDVFVNVPELVSELIRRGGHW 196
Query: 784 EQWE--QEPQRKAKVGDEE 834
EQWE +EP R K GD+E
Sbjct: 197 EQWEKGKEPPRAVKAGDKE 215
Score = 111 bits (278), Expect(2) = 2e-94
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +3
Query: 852 PTSGSQPVPLLYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
P SQP+PLLYLGRVHWRVHPSRTPGS+HQI+EEQWPP WGPFPPYAS TGY+LS
Sbjct: 220 PILKSQPMPLLYLGRVHWRVHPSRTPGSKHQISEEQWPPTWGPFPPYASGTGYVLS 275
>ref|XP_544891.2| PREDICTED: similar to Beta-1,3-galactosyltransferase 5
(Beta-1,3-GalTase 5) (Beta3Gal-T5) (b3Gal-T5)
(UDP-galactose:beta-N-acetylglucosamine
beta-1,3-galactosyltransferase 5) (UDP-Gal:beta-GlcNAc
beta-1,3-galactosyltransferase 5) (Beta-3-Gx-T5)...
[Canis familiaris].
Length = 377
Score = 103 bits (258), Expect = 2e-22
Identities = 48/118 (40%), Positives = 74/118 (62%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAA 597
PPFL++LV ++ + + R IR +WG+ + G ++T FLLG + +A+ES
Sbjct: 123 PPFLVLLVTSSHEQVFVRTVIRNTWGKEKNVHGRPIKTFFLLGATASKDLSKVVAQESQR 182
Query: 598 HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRR 771
H DI+Q F D+Y NLTLKT+ G+ W + CP A +++KTD D+FVNV L L+++
Sbjct: 183 HRDIIQKDFVDAYFNLTLKTMMGIEWIHRFCPQATFVMKTDSDMFVNVYYLTELLLKK 240
>ref|XP_545508.2| PREDICTED: similar to Beta-1,3-galactosyltransferase 1
(Beta-1,3-GalTase 1) (Beta3GalT1)
(UDP-galactose:beta-N-acetyl-glucosamine-beta-1,
3-galactosyltransferase 1) (UDP-Gal:betaGlcNAc beta
1,3-galactosyltranferase-I) [Canis familiaris].
Length = 326
Score = 100 bits (250), Expect = 2e-21
Identities = 48/116 (41%), Positives = 71/116 (61%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAAH 600
PFL+IL+ T + R AIR +WG +G+++ TLFLLG+ + + +ES
Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIF 137
Query: 601 GDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVR 768
DI+ F DSY NLTLKTL G+ W C A+Y++KTD D+FVN+ L+ +L++
Sbjct: 138 HDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLK 193
>ref|XP_849233.1| PREDICTED: similar to UDP-Gal:betaGlcNAc beta
1,3-galactosyltransferase 2 [Canis familiaris].
Length = 422
Score = 97.4 bits (241), Expect = 2e-20
Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPS--GGSRENDLARESA 594
PFL++L+ P R AIR +WG A G+++ +FLLG G + + ES
Sbjct: 151 PFLILLIAAEPGQTEARRAIRQTWGNESLAPGIQITRIFLLGVSIKLNGYLQRAILEESR 210
Query: 595 AHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVR 768
+ DI+Q + D+Y NLT+KTL G+NW +CP Y++KTD D+FVN L+ +L++
Sbjct: 211 QYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHIPYVMKTDSDMFVNTEYLIHKLLK 268
>ref|XP_541947.1| PREDICTED: similar to UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 3 (Beta3Gn-T3)
(BGnT-3) (Core 1 extending
beta-1,3-N-acetylglucosaminyltransferase)
(Core1-beta3GlcNAcT) (Beta-1,3-galactosyltransferase 8)
(Beta-1,3-GalTase 8) (Beta3Gal-T8) (b... [Canis
familiaris].
Length = 372
Score = 92.8 bits (229), Expect(2) = 1e-19
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 4/119 (3%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLG---EPSGGSRENDL-AR 585
P FLL+++ ++P N +R +R +WG R+ +G++++ LFL+G P + N L A
Sbjct: 106 PVFLLLVIKSSPKNYERRELVRRTWGSERQVKGVQLRRLFLVGTAPNPMEAHKVNRLLAM 165
Query: 586 ESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSEL 762
E+ AHGDI+Q F DS+ NLTLK + L W + C A ++L DDDVF + +VS L
Sbjct: 166 EAQAHGDILQWNFHDSFFNLTLKQVLFLQWQETRCTNASFVLNGDDDVFAHTDNMVSYL 224
Score = 22.7 bits (47), Expect(2) = 1e-19
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +3
Query: 882 LYLGRVHWRVHPSRTPGSRHQI----AEEQWPPAWGPFPPYASRTGYLLS 1019
L++G + V P R S++ + EE+ +PPY G+LLS
Sbjct: 233 LFVGHLIRNVGPIRVTWSKYYVPKIVTEEE------RYPPYCGGGGFLLS 276
>ref|XP_542294.2| PREDICTED: similar to beta-1,3-N-acetylglucosaminyltransferase
protein [Canis familiaris].
Length = 460
Score = 89.7 bits (221), Expect = 4e-18
Identities = 50/126 (39%), Positives = 73/126 (57%), Gaps = 8/126 (6%)
Frame = +1
Query: 400 CGGPGVPPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDL 579
C GP FLL+ V ++P N +R IR +WG+ R G +V+ LFLLG + G + +
Sbjct: 119 CAGPR-GAFLLLAVKSSPANYERRELIRRTWGQERSYGGQQVRRLFLLGTAAPGDADAER 177
Query: 580 ARESAA--------HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFV 735
A AA H D++Q AF D++ NLTLK + L+W + CP AR++L DDDVFV
Sbjct: 178 AERLAALVGLEAREHRDVLQWAFADTFLNLTLKHVHLLDWLAERCPHARFLLSCDDDVFV 237
Query: 736 NVPELV 753
+ ++
Sbjct: 238 HTANVL 243
>ref|XP_546887.2| PREDICTED: similar to UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 7 (predicted)
[Canis familiaris].
Length = 504
Score = 85.9 bits (211), Expect = 6e-17
Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 17/141 (12%)
Frame = +1
Query: 400 CGGPGVP---PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRE 570
C G G P P LLI V + + +R A+R +WG +G V+ +FLLG P G +
Sbjct: 208 CRGDGSPAGGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRGAGTD 267
Query: 571 ND--------------LARESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYI 708
L ES A+ DI+ AF D++ NLTLK + L WA +CP R++
Sbjct: 268 GADAEGEGPRSHWPALLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASAYCPQVRFV 327
Query: 709 LKTDDDVFVNVPELVSELVRR 771
K D DVFV+V L++ L R
Sbjct: 328 FKGDADVFVHVGNLLAFLAPR 348
>ref|XP_543284.2| PREDICTED: similar to UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 7 [Canis
familiaris].
Length = 530
Score = 83.2 bits (204), Expect = 4e-16
Identities = 59/153 (38%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Frame = +1
Query: 394 EACGGPGVPPFLLILVCTAPDNLNQRNAIRASWGRLREA----RGLRVQTLFLLGEPSGG 561
E CGG LL++V + ++R AIR +WGR +E+ RG ++TLFLLG S
Sbjct: 257 EKCGGH---VHLLVVVKSIITQHDRREAIRQTWGREQESVSGGRGA-IRTLFLLGTASKQ 312
Query: 562 SREND----LARESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDV 729
LA E +GDI+Q F DS+ NLTLK + L W D +CP ++I K DDDV
Sbjct: 313 EERTHYQQLLAYEDRLYGDILQWDFLDSFFNLTLKEIHFLKWFDIYCPNVQFIFKGDDDV 372
Query: 730 FVNVPELVSELVRRGGHWEQWEQEPQRKAKVGD 828
FVN L+ L + +P+ VGD
Sbjct: 373 FVNPTNLLEFLA---------DWQPREDLFVGD 396
>ref|XP_543380.2| PREDICTED: similar to beta-1,3-N-acetylglucosaminyltransferase
bGnT-4 [Canis familiaris].
Length = 536
Score = 82.4 bits (202), Expect = 6e-16
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = +1
Query: 424 FLLILVCTAPDNLNQRNAIRASWGRLRE-ARGLRVQTLFLLGEPSGGSRENDLARESAAH 600
FLL+ + + P ++ +R AIR++WGR+ ARG R++ +FLLG LA ES
Sbjct: 273 FLLLAIKSQPGHVERRAAIRSTWGRVGGWARGRRLKLVFLLGVAGPAPPAQLLAYESREF 332
Query: 601 GDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRRGGH 780
DI+Q F + + NLTLK L W C R++LK DDDVFV+VP ++ L
Sbjct: 333 DDILQWDFAEDFFNLTLKELHLQRWVAVACSQTRFMLKGDDDVFVHVPNVLEFL------ 386
Query: 781 WEQWEQEPQRKAKVGD 828
+ W +P + VGD
Sbjct: 387 -DGW--DPAQDLLVGD 399
>ref|XP_531841.1| PREDICTED: similar to UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 1 [Canis
familiaris].
Length = 397
Score = 77.4 bits (189), Expect(2) = 8e-16
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLAR----E 588
PFLL+ + + + +R AIR SWGR V +FLLG+ DL+ E
Sbjct: 142 PFLLLAIKSLIPHFARRQAIRESWGRETNVGNQTVVRVFLLGQTPPEDNHPDLSDMLKFE 201
Query: 589 SAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSEL 762
S H DI+ ++D++ NL+LK + L W CP A ++ K DDDVFVN +++ L
Sbjct: 202 SEKHQDILMWNYRDTFFNLSLKEVLFLRWVSASCPNAEFVFKGDDDVFVNTHHILNYL 259
Score = 25.0 bits (53), Expect(2) = 8e-16
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 882 LYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
L++G V P R ++ I E + G +PPYA G+L S
Sbjct: 270 LFIGDVIHNAGPHRDKKLKYYIPEVVYT---GVYPPYAGGGGFLYS 312
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,132,001
Number of extensions: 1238304
Number of successful extensions: 7227
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 7204
Number of HSP's successfully gapped: 16
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008866
(1021 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927603.1| PREDICTED: beta-1,3-galactosyltransferase 4-... 322 3e-88
Alignment gi|XP_003132823.1| PREDICTED: beta-1,3-galactosyltransferase 5-... 105 6e-25
Alignment gi|XP_003130525.1| PREDICTED: beta-1,3-galactosyltransferase 2-... 103 2e-22
Alignment gi|XP_001924755.2| PREDICTED: beta-1,3-galactosyltransferase 1 ... 100 1e-21
Alignment gi|NP_999516.1| UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltrans... 99 4e-21
Alignment gi|NP_999492.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 96 2e-20
Alignment gi|XP_003123547.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 88 1e-19
Alignment gi|XP_003129726.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 86 4e-17
Alignment gi|XP_003360741.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 79 2e-16
Alignment gi|XP_003125160.2| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 79 2e-16
>ref|XP_001927603.1| PREDICTED: beta-1,3-galactosyltransferase 4-like [Sus scrofa].
Length = 377
Score = 322 bits (824), Expect = 3e-88
Identities = 164/213 (76%), Positives = 167/213 (78%)
Frame = +1
Query: 259 VIIWTLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPNEEACGGPGVPPFLLIL 438
VIIWTLF IPNEEACGGPGVPPFLLIL
Sbjct: 17 VIIWTLFGPSGLGEELLSLSLASLLPAPASPGPPLALPRLLIPNEEACGGPGVPPFLLIL 76
Query: 439 VCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAAHGDIVQA 618
VCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAAHGDIVQA
Sbjct: 77 VCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAAHGDIVQA 136
Query: 619 AFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRRGGHWEQWEQ 798
AFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRRGGHWEQWEQ
Sbjct: 137 AFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRRGGHWEQWEQ 196
Query: 799 EPQRKAKVGDEEGGGKEAPPRGASRCLSCTWAG 897
EPQRKAKVGDEEGG E P S+ + + G
Sbjct: 197 EPQRKAKVGDEEGG--EGSPTSGSQPVPLLYLG 227
Score = 125 bits (314), Expect = 4e-29
Identities = 55/57 (96%), Positives = 55/57 (96%)
Frame = +3
Query: 849 SPTSGSQPVPLLYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
SPTSGSQPVPLLYLGRVHWRVHPSRTPG RHQIAEEQWPPAWGPFPPYAS TGYLLS
Sbjct: 213 SPTSGSQPVPLLYLGRVHWRVHPSRTPGGRHQIAEEQWPPAWGPFPPYASGTGYLLS 269
>ref|XP_003132823.1| PREDICTED: beta-1,3-galactosyltransferase 5-like [Sus scrofa].
Length = 311
Score = 105 bits (261), Expect(2) = 6e-25
Identities = 48/118 (40%), Positives = 74/118 (62%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAA 597
PPFL++LV ++ + L R AIR +WG+ +G R+++ FLLG + G +A+E
Sbjct: 57 PPFLVLLVTSSHEQLLARKAIRQTWGKASTVQGKRIRSFFLLGTTNSGDLSRAVAQEIEQ 116
Query: 598 HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRR 771
+ DI+Q F D Y NLTLKT+ G+ W + CP A +++KTD D+FVN+ L L+ +
Sbjct: 117 YHDIIQKDFLDVYFNLTLKTMMGMEWVSRFCPQATFVMKTDSDMFVNIYYLTDLLLAK 174
Score = 27.3 bits (59), Expect(2) = 6e-25
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 885 YLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
+ G + +P R ++ +++ ++P W +PP+ S TGY+ S
Sbjct: 181 FTGFLKLNEYPIRRRYNKWFVSKYEYP--WEKYPPFCSGTGYVFS 223
>ref|XP_003130525.1| PREDICTED: beta-1,3-galactosyltransferase 2-like [Sus scrofa].
Length = 422
Score = 103 bits (257), Expect = 2e-22
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSG--GSRENDLARESA 594
PFL++L+ P + R AIR +WG A G+R+ +FLLG G + + ES
Sbjct: 151 PFLILLIAAEPGQIEARRAIRQTWGNESLAPGIRITRIFLLGVSVKLQGHLQRAILEESR 210
Query: 595 AHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVR 768
H DI+Q + D+Y NLT+KTL G+NW +CP + Y++KTD D+FVN L+ +L++
Sbjct: 211 QHHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPQSPYVMKTDSDMFVNTEYLIHKLLK 268
>ref|XP_001924755.2| PREDICTED: beta-1,3-galactosyltransferase 1 [Sus scrofa].
Length = 326
Score = 100 bits (250), Expect = 1e-21
Identities = 48/116 (41%), Positives = 71/116 (61%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAAH 600
PFL+IL+ T + R AIR +WG +G+++ TLFLLG+ + + +ES
Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIF 137
Query: 601 GDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVR 768
DI+ F DSY NLTLKTL G+ W C A+Y++KTD D+FVN+ L+ +L++
Sbjct: 138 HDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLK 193
>ref|NP_999516.1| UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 [Sus
scrofa].
Length = 331
Score = 99.0 bits (245), Expect = 4e-21
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSREN-----DLAR 585
PFL+ILV + P ++ R AIR +WG + G V T FLLG+ + RE+ L
Sbjct: 78 PFLVILVTSHPADVKARQAIRVTWGEKKSWWGYEVLTFFLLGQQA--EREDKVLALSLED 135
Query: 586 ESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELV 765
E +GDI++ F D+Y NLTLKT+ W + CP ARYI+KTD DVF+N LV L+
Sbjct: 136 EHLLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNARYIMKTDTDVFINTGNLVKYLL 195
>ref|NP_999492.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 [Sus
scrofa].
Length = 377
Score = 96.3 bits (238), Expect = 2e-20
Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 7/134 (5%)
Frame = +1
Query: 382 IPNEEACGGPGVPPFLLILVCTAPDNLNQRNAIRASWGR---LREARGLRVQTLFLLGEP 552
I +EE C V LL+ V TAP+N N+R+AIR +WG ++ ++TLF+LG P
Sbjct: 75 INHEEKCQAQDV--LLLLFVKTAPENYNRRSAIRNTWGNEKYVQSQLNANIKTLFVLGTP 132
Query: 553 SGGSRENDLAR----ESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTD 720
S L R E + DI+Q F DS+ NLTLK L WA+ CP A++++ D
Sbjct: 133 SDPLMRERLQRRLVWEDHMYSDIIQQDFVDSFYNLTLKFLLQFKWANSFCPHAKFLMTAD 192
Query: 721 DDVFVNVPELVSEL 762
DD+F+++P L+ L
Sbjct: 193 DDIFIHMPNLIEYL 206
>ref|XP_003123547.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 3-like [Sus
scrofa].
Length = 374
Score = 87.8 bits (216), Expect(2) = 1e-19
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLG---EPSGGSRENDL-AR 585
P FLL+++ ++P N +R +R +WG R+ G V+ LFL+G P + N L A
Sbjct: 108 PVFLLLVIKSSPSNYERRELVRRTWGHERQVHGFLVRRLFLVGTDPNPLEALKVNRLLAM 167
Query: 586 ESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSEL 762
E+ HGDI+Q F DS+ NLTLK + L W + C A ++L DDDVF + +V+ L
Sbjct: 168 EAQMHGDILQWDFYDSFFNLTLKQVLFLQWQETRCTNASFVLNGDDDVFAHTGNMVTYL 226
Score = 26.6 bits (57), Expect(2) = 1e-19
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 861 GSQPVPLLYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
G P L++G + V P R P S++ + + +PPY G+LLS
Sbjct: 228 GHNPDHHLFVGHLIHNVGPIRFPWSKYYVPKVVMEDEH--YPPYCGGGGFLLS 278
>ref|XP_003129726.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 6-like [Sus
scrofa].
Length = 379
Score = 85.5 bits (210), Expect = 4e-17
Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Frame = +1
Query: 424 FLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLG--EPSGGSRENDLAR---- 585
FLL+ + ++P N +R+ IR +WG+ R G +V+ LFLLG P R LA
Sbjct: 113 FLLLAIKSSPANYERRDLIRRTWGQERSYIGRQVRRLFLLGIAAPEDAERAEQLAALVAL 172
Query: 586 ESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELV 753
E+ HGD++Q AF D++ NLTLK + L+W + C ++L DDDVFV+ +V
Sbjct: 173 EAREHGDVLQWAFADTFLNLTLKHVHLLDWLEARCSRVHFLLSGDDDVFVHTANVV 228
>ref|XP_003360741.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 2-like [Sus
scrofa].
Length = 397
Score = 78.6 bits (192), Expect(2) = 2e-16
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLAR----E 588
PFLL+ + + + ++R AIR SWG+ V +FLLG+ DL+ E
Sbjct: 142 PFLLLAIKSLTSHFDRRQAIRESWGKETNVGNQTVVRVFLLGQTPPEDNHPDLSDMLKFE 201
Query: 589 SAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSEL 762
S H DI+ ++D++ NL+LK + L W CP A ++ K DDDVFVN +++ L
Sbjct: 202 SEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPNAEFVFKGDDDVFVNTHHILNYL 259
Score = 25.0 bits (53), Expect(2) = 2e-16
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 882 LYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
L++G V P R ++ I E + G +PPYA G+L S
Sbjct: 270 LFIGDVIHNAGPHRDKKLKYYIPEVVYT---GVYPPYAGGGGFLYS 312
>ref|XP_003125160.2| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 2-like [Sus
scrofa].
Length = 397
Score = 78.6 bits (192), Expect(2) = 2e-16
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLAR----E 588
PFLL+ + + + ++R AIR SWG+ V +FLLG+ DL+ E
Sbjct: 142 PFLLLAIKSLTSHFDRRQAIRESWGKETNVGNQTVVRVFLLGQTPPEDNHPDLSDMLKFE 201
Query: 589 SAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSEL 762
S H DI+ ++D++ NL+LK + L W CP A ++ K DDDVFVN +++ L
Sbjct: 202 SEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPNAEFVFKGDDDVFVNTHHILNYL 259
Score = 25.0 bits (53), Expect(2) = 2e-16
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 882 LYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
L++G V P R ++ I E + G +PPYA G+L S
Sbjct: 270 LFIGDVIHNAGPHRDKKLKYYIPEVVYT---GVYPPYAGGGGFLYS 312
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,534,639
Number of extensions: 780767
Number of successful extensions: 4472
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4447
Number of HSP's successfully gapped: 20
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008866
(1021 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062293.1| beta-1,3-galactosyltransferase 4 [Mus musculus]. 223 2e-79
Alignment gi|NP_001116465.1| beta-1,3-galactosyltransferase 5 [Mus muscul... 104 1e-22
Alignment gi|NP_149161.1| beta-1,3-galactosyltransferase 5 [Mus musculus]. 104 1e-22
Alignment gi|XP_892911.1| PREDICTED: putative UDP-GlcNAc:betaGal beta-1,3... 94 2e-22
Alignment gi|XP_920569.1| PREDICTED: putative UDP-GlcNAc:betaGal beta-1,3... 94 2e-22
Alignment gi|NP_064679.2| beta-1,3-galactosyltransferase 1 [Mus musculus]. 100 1e-21
Alignment gi|NP_064410.1| UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltrans... 99 7e-21
Alignment gi|NP_064409.3| beta-1,3-galactosyltransferase 2 [Mus musculus]. 98 1e-20
Alignment gi|NP_001074636.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosam... 89 7e-18
Alignment gi|NP_082465.3| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 83 9e-18
>ref|NP_062293.1| beta-1,3-galactosyltransferase 4 [Mus musculus].
Length = 371
Score = 223 bits (567), Expect(2) = 2e-79
Identities = 119/201 (59%), Positives = 136/201 (67%), Gaps = 2/201 (0%)
Frame = +1
Query: 259 VIIWTLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPNEEACGGPGVPPFLLIL 438
VIIWTLF I N ACGG G PPFLLIL
Sbjct: 17 VIIWTLFGPSGLGEELLSLSLASLLPAPASPGPPLALPRLLISNSHACGGSGPPPFLLIL 76
Query: 439 VCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAAHGDIVQA 618
VCTAP++LNQRNAIRASWG +REARG RVQTLFLLG+P + DL+ ESAAH DI+QA
Sbjct: 77 VCTAPEHLNQRNAIRASWGAIREARGFRVQTLFLLGKPRR-QQLADLSSESAAHRDILQA 135
Query: 619 AFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRRGGHWEQWE- 795
+FQDSYRNLTLKTLSGLNW +K+CPMARYILKTDDDV+VNVPELVSEL++RGG EQW+
Sbjct: 136 SFQDSYRNLTLKTLSGLNWVNKYCPMARYILKTDDDVYVNVPELVSELIQRGGPSEQWQK 195
Query: 796 -QEPQRKAKVGDEEGGGKEAP 855
+E Q + EE G+ P
Sbjct: 196 GKEAQEETTAIHEEHRGQAVP 216
Score = 92.4 bits (228), Expect(2) = 2e-79
Identities = 39/51 (76%), Positives = 43/51 (84%)
Frame = +3
Query: 867 QPVPLLYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
Q VPLLYLGRVHWRV P+RTP SRH ++EE WP WGPFPPYAS TGY+LS
Sbjct: 213 QAVPLLYLGRVHWRVRPTRTPESRHHVSEELWPENWGPFPPYASGTGYVLS 263
>ref|NP_001116465.1| beta-1,3-galactosyltransferase 5 [Mus musculus].
Length = 308
Score = 104 bits (260), Expect = 1e-22
Identities = 51/118 (43%), Positives = 71/118 (60%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAA 597
PPFL++LV ++ L R AIR +WGR +G +V+T FLLG + ES
Sbjct: 54 PPFLVLLVTSSHKQLAARMAIRKTWGRETSVQGQQVRTFFLLGTSDSTEEMDATTLESEQ 113
Query: 598 HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRR 771
H DI+Q F+D+Y NLTLKT+ G+ W CP Y++KTD D+FVNV L L+++
Sbjct: 114 HRDIIQKDFKDAYFNLTLKTMMGMEWVYHFCPQTAYVMKTDSDMFVNVGYLTELLLKK 171
>ref|NP_149161.1| beta-1,3-galactosyltransferase 5 [Mus musculus].
Length = 308
Score = 104 bits (260), Expect = 1e-22
Identities = 51/118 (43%), Positives = 71/118 (60%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAA 597
PPFL++LV ++ L R AIR +WGR +G +V+T FLLG + ES
Sbjct: 54 PPFLVLLVTSSHKQLAARMAIRKTWGRETSVQGQQVRTFFLLGTSDSTEEMDATTLESEQ 113
Query: 598 HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRR 771
H DI+Q F+D+Y NLTLKT+ G+ W CP Y++KTD D+FVNV L L+++
Sbjct: 114 HRDIIQKDFKDAYFNLTLKTMMGMEWVYHFCPQTAYVMKTDSDMFVNVGYLTELLLKK 171
>ref|XP_892911.1| PREDICTED: putative UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase LOC402377-like
[Mus musculus].
Length = 368
Score = 94.4 bits (233), Expect(2) = 2e-22
Identities = 51/131 (38%), Positives = 76/131 (58%)
Frame = +1
Query: 394 EACGGPGVPPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSREN 573
E C G + FLL L+ ++P N +R+ IR +WG + +G + TLF LG P+ + +
Sbjct: 77 EVCNGKTI--FLLSLIFSSPGNGTRRDLIRKAWGSVTTVQGYPILTLFALGMPALVTTQE 134
Query: 574 DLARESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELV 753
++ ES + DI++ F DS N TLK +S WA CP A +ILK D++F+N+P LV
Sbjct: 135 EIDAESQKNNDIIEGIFLDSSENQTLKIISMTQWAVAFCPSALFILKA-DEMFINLPGLV 193
Query: 754 SELVRRGGHWE 786
L+ GH E
Sbjct: 194 DYLLNLKGHLE 204
Score = 30.0 bits (66), Expect(2) = 2e-22
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 882 LYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
+YLGRV + P+R P S+ ++ ++P + +P Y S ++LS
Sbjct: 206 IYLGRVIHQDIPNRDPHSQEFVSLSEYPEKY--YPDYCSGEAFILS 249
>ref|XP_920569.1| PREDICTED: putative UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase LOC402377-like
[Mus musculus].
Length = 368
Score = 94.4 bits (233), Expect(2) = 2e-22
Identities = 51/131 (38%), Positives = 76/131 (58%)
Frame = +1
Query: 394 EACGGPGVPPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSREN 573
E C G + FLL L+ ++P N +R+ IR +WG + +G + TLF LG P+ + +
Sbjct: 77 EVCNGKTI--FLLSLIFSSPGNGTRRDLIRKAWGSVTTVQGYPILTLFALGMPALVTTQE 134
Query: 574 DLARESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELV 753
++ ES + DI++ F DS N TLK +S WA CP A +ILK D++F+N+P LV
Sbjct: 135 EIDAESQKNNDIIEGIFLDSSENQTLKIISMTQWAVAFCPSALFILKA-DEMFINLPGLV 193
Query: 754 SELVRRGGHWE 786
L+ GH E
Sbjct: 194 DYLLNLKGHLE 204
Score = 30.0 bits (66), Expect(2) = 2e-22
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 882 LYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
+YLGRV + P+R P S+ ++ ++P + +P Y S ++LS
Sbjct: 206 IYLGRVIHQDIPNRDPHSQEFVSLSEYPEKY--YPDYCSGEAFILS 249
>ref|NP_064679.2| beta-1,3-galactosyltransferase 1 [Mus musculus].
Length = 326
Score = 100 bits (250), Expect = 1e-21
Identities = 48/116 (41%), Positives = 71/116 (61%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAAH 600
PFL+IL+ T + R AIR +WG +G+++ TLFLLG+ + + +ES
Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIF 137
Query: 601 GDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVR 768
DI+ F DSY NLTLKTL G+ W C A+Y++KTD D+FVN+ L+ +L++
Sbjct: 138 HDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLK 193
>ref|NP_064410.1| UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 [Mus
musculus].
Length = 331
Score = 98.6 bits (244), Expect = 7e-21
Identities = 52/120 (43%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSREN-----DLAR 585
PFL+ILV + P ++ R AIR +WG + G V T FLLG+ + RE+ L
Sbjct: 78 PFLVILVTSRPSDVKARQAIRVTWGEKKSWWGYEVLTFFLLGQQA--EREDKTLALSLED 135
Query: 586 ESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELV 765
E +GDI++ F D+Y NLTLKT+ W + CP A+YI+KTD DVF+N LV L+
Sbjct: 136 EHVLYGDIIRQDFLDTYNNLTLKTIMAFRWVMEFCPNAKYIMKTDTDVFINTGNLVKYLL 195
>ref|NP_064409.3| beta-1,3-galactosyltransferase 2 [Mus musculus].
Length = 422
Score = 97.8 bits (242), Expect = 1e-20
Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPS--GGSRENDLARESA 594
PFL++L+ P + R AIR +WG A G+++ +FLLG G ++ + ES
Sbjct: 151 PFLILLIAAEPGQIEARRAIRQTWGNETLAPGIQIIRVFLLGISIKLNGYLQHAIQEESR 210
Query: 595 AHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVR 768
+ DI+Q + D+Y NLT+KTL G+NW +CP Y++KTD D+FVN L+ +L++
Sbjct: 211 QYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHTPYVMKTDSDMFVNTEYLIHKLLK 268
>ref|NP_001074636.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 [Mus
musculus].
Length = 391
Score = 88.6 bits (218), Expect = 7e-18
Identities = 53/128 (41%), Positives = 76/128 (59%), Gaps = 7/128 (5%)
Frame = +1
Query: 400 CGGP-GVPPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGE--PSGGSRE 570
C GP GV FLL+ V ++P + +R IR +WG+ R G +V LFL+G P +RE
Sbjct: 106 CAGPRGV--FLLLAVKSSPAHYERRELIRRTWGQERSYSGRQVLRLFLVGTSPPEEAARE 163
Query: 571 NDLAR----ESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVN 738
LA E+ +GD++Q F D++ NLTLK L L+W +HCP ++L DDDVFV+
Sbjct: 164 PQLADLLSLEAREYGDVLQWDFSDTFLNLTLKHLHLLDWTAEHCPGVSFLLSCDDDVFVH 223
Query: 739 VPELVSEL 762
++S L
Sbjct: 224 TANVLSFL 231
>ref|NP_082465.3| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 [Mus
musculus].
Length = 372
Score = 82.8 bits (203), Expect(2) = 9e-18
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLG---EPSGGSRENDLAR- 585
P FLL+ + ++P N +R +R +W R R RG ++ LFL+G +P + N L
Sbjct: 106 PVFLLLAIKSSPANYGRRQMLRTTWARERRVRGAPLRRLFLVGSDRDPQQARKYNRLLEL 165
Query: 586 ESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSEL 762
E+ +GDI+Q F DS+ NLTLK + L W +C A ++L DDDVF + +V+ L
Sbjct: 166 EAQKYGDILQWDFHDSFFNLTLKQVLFLEWQLTYCTNASFVLNGDDDVFAHTDNMVTYL 224
Score = 25.8 bits (55), Expect(2) = 9e-18
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 882 LYLGRVHWRVHPSRTPGSRHQI-----AEEQWPPAWGPFPPYASRTGYLLS 1019
L++G + V P R P S++ I AE++ +PPY G+LLS
Sbjct: 233 LFVGHLIQNVGPIRVPWSKYFIPALVMAEDR-------YPPYCGGGGFLLS 276
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,183,690
Number of extensions: 953783
Number of successful extensions: 4781
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 4751
Number of HSP's successfully gapped: 29
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008866
(1021 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003773.1| beta-1,3-galactosyltransferase 4 [Homo sapiens]. 254 5e-91
Alignment gi|NP_149363.1| beta-1,3-galactosyltransferase 5 [Homo sapiens]. 114 2e-25
Alignment gi|NP_149362.1| beta-1,3-galactosyltransferase 5 [Homo sapiens]. 114 2e-25
Alignment gi|NP_149361.1| beta-1,3-galactosyltransferase 5 [Homo sapiens]. 114 2e-25
Alignment gi|NP_149360.1| beta-1,3-galactosyltransferase 5 [Homo sapiens]. 114 2e-25
Alignment gi|NP_006048.1| beta-1,3-galactosyltransferase 5 [Homo sapiens]. 114 2e-25
Alignment gi|NP_066191.1| beta-1,3-galactosyltransferase 1 [Homo sapiens]. 100 2e-21
Alignment gi|NP_003774.1| beta-1,3-galactosyltransferase 2 [Homo sapiens]. 99 6e-21
Alignment gi|NP_114436.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 97 2e-20
Alignment gi|NP_149358.1| UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltrans... 97 2e-20
>ref|NP_003773.1| beta-1,3-galactosyltransferase 4 [Homo sapiens].
Length = 378
Score = 254 bits (650), Expect(2) = 5e-91
Identities = 133/201 (66%), Positives = 147/201 (73%), Gaps = 7/201 (3%)
Frame = +1
Query: 259 VIIWTLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPNEEACGGPGVPPFLLIL 438
VI+WTLF IPN+EAC GPG PPFLLIL
Sbjct: 17 VIVWTLFGPSGLGEELLSLSLASLLPAPASPGPPLALPRLLIPNQEACSGPGAPPFLLIL 76
Query: 439 VCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSG-----GSRENDLARESAAHG 603
VCTAP+NLNQRNAIRASWG LREARGLRVQTLFLLGEP+ GS+ +DLA ESAA G
Sbjct: 77 VCTAPENLNQRNAIRASWGGLREARGLRVQTLFLLGEPNAQHPVWGSQGSDLASESAAQG 136
Query: 604 DIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRRGGHW 783
DI+QAAFQDSYRNLTLKTLSGLNWA+KHCPMARY+LKTDDDV+VNVPELVSELV RGG W
Sbjct: 137 DILQAAFQDSYRNLTLKTLSGLNWAEKHCPMARYVLKTDDDVYVNVPELVSELVLRGGRW 196
Query: 784 EQWEQ--EPQRKAKVGDEEGG 840
QWE+ EPQR+A ++EGG
Sbjct: 197 GQWERSTEPQREA---EQEGG 214
Score = 99.4 bits (246), Expect(2) = 5e-91
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = +3
Query: 864 SQPVPLLYLGRVHWRVHPSRTPGSRHQIAEEQWPPAWGPFPPYASRTGYLLS 1019
S+ VPLLYLGRVHWRV+PSRTPG RH+++EEQWP WGPFPPYAS TGY+LS
Sbjct: 219 SEEVPLLYLGRVHWRVNPSRTPGGRHRVSEEQWPHTWGPFPPYASGTGYVLS 270
>ref|NP_149363.1| beta-1,3-galactosyltransferase 5 [Homo sapiens].
Length = 310
Score = 114 bits (284), Expect = 2e-25
Identities = 51/118 (43%), Positives = 78/118 (66%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAA 597
PPFL++LV ++ L +R AIR +WG+ R +G +++T FLLG S + ++ +ES
Sbjct: 56 PPFLVLLVTSSHKQLAERMAIRQTWGKERMVKGKQLKTFFLLGTTSSAAETKEVDQESQR 115
Query: 598 HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRR 771
HGDI+Q F D Y NLTLKT+ G+ W + CP A +++KTD D+F+NV L L+++
Sbjct: 116 HGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKK 173
>ref|NP_149362.1| beta-1,3-galactosyltransferase 5 [Homo sapiens].
Length = 310
Score = 114 bits (284), Expect = 2e-25
Identities = 51/118 (43%), Positives = 78/118 (66%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAA 597
PPFL++LV ++ L +R AIR +WG+ R +G +++T FLLG S + ++ +ES
Sbjct: 56 PPFLVLLVTSSHKQLAERMAIRQTWGKERMVKGKQLKTFFLLGTTSSAAETKEVDQESQR 115
Query: 598 HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRR 771
HGDI+Q F D Y NLTLKT+ G+ W + CP A +++KTD D+F+NV L L+++
Sbjct: 116 HGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKK 173
>ref|NP_149361.1| beta-1,3-galactosyltransferase 5 [Homo sapiens].
Length = 310
Score = 114 bits (284), Expect = 2e-25
Identities = 51/118 (43%), Positives = 78/118 (66%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAA 597
PPFL++LV ++ L +R AIR +WG+ R +G +++T FLLG S + ++ +ES
Sbjct: 56 PPFLVLLVTSSHKQLAERMAIRQTWGKERMVKGKQLKTFFLLGTTSSAAETKEVDQESQR 115
Query: 598 HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRR 771
HGDI+Q F D Y NLTLKT+ G+ W + CP A +++KTD D+F+NV L L+++
Sbjct: 116 HGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKK 173
>ref|NP_149360.1| beta-1,3-galactosyltransferase 5 [Homo sapiens].
Length = 310
Score = 114 bits (284), Expect = 2e-25
Identities = 51/118 (43%), Positives = 78/118 (66%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAA 597
PPFL++LV ++ L +R AIR +WG+ R +G +++T FLLG S + ++ +ES
Sbjct: 56 PPFLVLLVTSSHKQLAERMAIRQTWGKERMVKGKQLKTFFLLGTTSSAAETKEVDQESQR 115
Query: 598 HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRR 771
HGDI+Q F D Y NLTLKT+ G+ W + CP A +++KTD D+F+NV L L+++
Sbjct: 116 HGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKK 173
>ref|NP_006048.1| beta-1,3-galactosyltransferase 5 [Homo sapiens].
Length = 310
Score = 114 bits (284), Expect = 2e-25
Identities = 51/118 (43%), Positives = 78/118 (66%)
Frame = +1
Query: 418 PPFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAA 597
PPFL++LV ++ L +R AIR +WG+ R +G +++T FLLG S + ++ +ES
Sbjct: 56 PPFLVLLVTSSHKQLAERMAIRQTWGKERMVKGKQLKTFFLLGTTSSAAETKEVDQESQR 115
Query: 598 HGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVRR 771
HGDI+Q F D Y NLTLKT+ G+ W + CP A +++KTD D+F+NV L L+++
Sbjct: 116 HGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKK 173
>ref|NP_066191.1| beta-1,3-galactosyltransferase 1 [Homo sapiens].
Length = 326
Score = 100 bits (250), Expect = 2e-21
Identities = 48/116 (41%), Positives = 71/116 (61%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSRENDLARESAAH 600
PFL+IL+ T + R AIR +WG +G+++ TLFLLG+ + + +ES
Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIF 137
Query: 601 GDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVR 768
DI+ F DSY NLTLKTL G+ W C A+Y++KTD D+FVN+ L+ +L++
Sbjct: 138 HDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLK 193
>ref|NP_003774.1| beta-1,3-galactosyltransferase 2 [Homo sapiens].
Length = 422
Score = 99.0 bits (245), Expect = 6e-21
Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPS--GGSRENDLARESA 594
PFL++L+ P + R AIR +WG A G+++ +FLLG G + + ES
Sbjct: 151 PFLILLIAAEPGQIEARRAIRQTWGNESLAPGIQITRIFLLGLSIKLNGYLQRAILEESR 210
Query: 595 AHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELVR 768
+ DI+Q + D+Y NLT+KTL G+NW +CP Y++KTD D+FVN L+++L++
Sbjct: 211 QYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHIPYVMKTDSDMFVNTEYLINKLLK 268
>ref|NP_114436.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 [Homo
sapiens].
Length = 378
Score = 97.1 bits (240), Expect = 2e-20
Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 6/133 (4%)
Frame = +1
Query: 382 IPNEEACGGPGVPPFLLILVCTAPDNLNQRNAIRASWGR---LREARGLRVQTLFLLGEP 552
I ++E C V LL+ V TAP+N ++R+ IR +WG +R ++TLF LG P
Sbjct: 77 INHKEKCQAQDV--LLLLFVKTAPENYDRRSGIRRTWGNENYVRSQLNANIKTLFALGTP 134
Query: 553 S---GGSRENDLARESAAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDD 723
+ G + LA E + DI+Q F DS+ NLTLK L +WA+ +CP A++++ DD
Sbjct: 135 NPLEGEELQRKLAWEDQRYNDIIQQDFVDSFYNLTLKLLMQFSWANTYCPHAKFLMTADD 194
Query: 724 DVFVNVPELVSEL 762
D+F+++P L+ L
Sbjct: 195 DIFIHMPNLIEYL 207
>ref|NP_149358.1| UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 [Homo
sapiens].
Length = 331
Score = 97.1 bits (240), Expect = 2e-20
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Frame = +1
Query: 421 PFLLILVCTAPDNLNQRNAIRASWGRLREARGLRVQTLFLLGEPSGGSREN---DLARES 591
PFL+ILV + P ++ R AIR +WG + G V T FLLG+ + + L E
Sbjct: 78 PFLVILVTSHPSDVKARQAIRVTWGEKKSWWGYEVLTFFLLGQEAEKEDKMLALSLEDEH 137
Query: 592 AAHGDIVQAAFQDSYRNLTLKTLSGLNWADKHCPMARYILKTDDDVFVNVPELVSELV 765
+GDI++ F D+Y NLTLKT+ W + CP A+Y++KTD DVF+N LV L+
Sbjct: 138 LLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNAKYVMKTDTDVFINTGNLVKYLL 195
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,884,511
Number of extensions: 1182660
Number of successful extensions: 6509
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 6473
Number of HSP's successfully gapped: 25
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008866
(1021 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1608 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1608 bits (811), Expect = 0.0
Identities = 832/838 (99%), Gaps = 2/838 (0%)
Strand = Plus / Plus
Query: 184 ccagctcaccaacgaccgtcgcccaccatgcgcctaagcctctcccggcgcctgctcctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147245 ccagctcaccaacgaccgtcgcccaccatgcgcctaagcctctcccggcgcctgctcctc 34147304
Query: 244 gccgccctgctgttggtgattatctggactctatttggaccctcaggcctcggggaggag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147305 gccgccctgctgttggtgattatctggactctatttggaccctcaggcctcggggaggag 34147364
Query: 304 ctgctgagcctctcgctggcctccctgctcccagccccggcctctcctgggccgcccctg 363
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147365 ctgctgagtctctcgctggcctccctgctcccagccccggcctctcctgggccgcccctg 34147424
Query: 364 gccttgcctcgcctcttgatccccaacgaggaggcgtgtggcgggcccggcgttcctccg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147425 gccttgcctcgcctcttgatccccaacgaggaggcgtgtggcgggcccggcgttcctccg 34147484
Query: 424 ttcctgctaatcctggtttgcacagccccggacaacctgaaccagaggaatgccattcgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147485 ttcctgctaatcctggtttgcacagccccggacaacctgaaccagaggaatgccattcgg 34147544
Query: 484 gcctcgtggggccggctgcgcgaggcccgggggctcagggtgcagactctctttctgctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147545 gcctcgtggggccggctgcgcgaggcccgggggctcagggtgcagactctctttctgctg 34147604
Query: 544 ggagagcctagcggaggctccagagagaacgacctggccagggagtcagctgcccatggg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147605 ggagagcctagcggaggctccagagagaacgacctggccagggagtcagctgcccatggg 34147664
Query: 604 gatatcgtgcaggcggccttccaggactcctatcgcaatctcaccctcaagaccctcagc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147665 gatatcgtgcaggcggccttccaggactcctatcgcaatctcaccctcaagaccctcagc 34147724
Query: 664 gggctgaactgggctgacaaacactgccccatggcccgctacattctcaagactgacgac 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147725 gggctgaactgggctgacaaacactgccccatggcccgctacattctcaagactgacgac 34147784
Query: 724 gacgtgtttgtcaatgtcccagagctggtatcagagctggtccggcgagggggccattgg 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147785 gacgtgtttgtcaatgtcccagagctggtatcagagctggtccggcgagggggccattgg 34147844
Query: 784 gagcaatgggagcaggagccccagagaaaggctaaggttggtgatgaggagggtggggga 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147845 gagcaatgggagcaggagccccagagaaaggctaaggttggtgatgaggagggtgggg-- 34147902
Query: 844 aaggaagccccacctcggggagccagccggtgcctctcttgtacttgggccgggtgcact 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147903 aaggaagccccacctcggggagccagccggtgcctctcttgtacttgggccgggtgcact 34147962
Query: 904 ggcgggtgcacccttctaggacgccaggaagcaggcaccagatagcagaggagcagtggc 963
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 34147963 ggcgggtgcacccttctaggacgccaggaggcaggcaccagatagcagaggagcagtggc 34148022
Query: 964 ctcccgcctggggccccttccccccttacgcctcaagaactggatacctgctgtcagc 1021
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 34148023 ctcccgcctggggccccttccccccttacgcctcaggaacgggatacctgctgtcagc 34148080
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 1 gttccgtgtttgggaggaggtcgctgcggatcgtcccgcggccccgaacccactcctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34146955 gttccgtgtttgggaggaggtcgctgcggatcgtcccgcggccccgaacccactcctgcc 34147014
Query: 61 gcgtctcggcgagaacgccgcgccctccgttcaggttctgccttccgagggggcgagagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147015 gcgtctcggcgagaacgccgcgccctccgttcaggttctgccttccgagggggcgagagc 34147074
Query: 121 ttcaccccggacgccgggacctgcaggccccgcccacccagcgaggggcggggccggggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34147075 ttcaccccggacgccgggacctgcaggccccgcccacccagcgaggggcggggccggggc 34147134
Query: 181 tgaccag 187
|||||||
Sbjct: 34147135 tgaccag 34147141
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,044,636
Number of extensions: 229
Number of successful extensions: 229
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 2
Length of query: 1021
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1000
Effective length of database: 2,808,413,156
Effective search space: 2808413156000
Effective search space used: 2808413156000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)