Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008871
(987 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039519.1| B-cell linker protein [Bos taurus]. 401 e-112
Alignment gi|NP_001070312.1| lymphocyte cytosolic protein 2 [Bos taurus]. 50 3e-06
>ref|NP_001039519.1| B-cell linker protein [Bos taurus].
Length = 459
Score = 401 bits (1031), Expect = e-112
Identities = 205/270 (75%), Positives = 209/270 (77%)
Frame = +2
Query: 176 MDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE 355
MDKLNKITVPASQKLRQLQK+VHD+KNNEGGIMNKIKKLKVKAPPSVPRRDYA ESPADE
Sbjct: 1 MDKLNKITVPASQKLRQLQKMVHDIKNNEGGIMNKIKKLKVKAPPSVPRRDYAPESPADE 60
Query: 356 EEQWSDDFDSDYENPDEHSDSEMYVLPAEEAGDDSYEPPPAEQETRTVHPALPFTRGEYV 535
EEQWSDDFDSDYENPDEHSDSEMYVLPAEEAGDDSYEPPPAEQETRTVHPALPFTRGEYV
Sbjct: 61 EEQWSDDFDSDYENPDEHSDSEMYVLPAEEAGDDSYEPPPAEQETRTVHPALPFTRGEYV 120
Query: 536 DNRSSQRQSPPFSKTLPSKPSWPXXXXXXXXXXXXXXXXXXXXXXXXQVPPKPKDLLEDE 715
DNRSSQRQSPPFSKTLPSKP+WP QVPPKPK+LLEDE
Sbjct: 121 DNRSSQRQSPPFSKTLPSKPNWP-----SAKARLATSLPANTSLHKPQVPPKPKELLEDE 175
Query: 716 ADYVVPVEDEDENYIHPTEDSSPPSEKAPMVNRXXXXXXXXXXXXXXGTASGRSSGAWDX 895
ADYVVPVEDEDENYIHPTEDSS PSEKAPMVNR GTA GR SGAWD
Sbjct: 176 ADYVVPVEDEDENYIHPTEDSSVPSEKAPMVNRSIKPNNSSKSASPPGTAPGRKSGAWDS 235
Query: 896 XXXXXXXXXXXXXXXGKKPAMQLKTTPSAS 985
GKK AM LKTTP AS
Sbjct: 236 KSTSLPAAPSPLPRAGKKTAMPLKTTPVAS 265
>ref|NP_001070312.1| lymphocyte cytosolic protein 2 [Bos taurus].
Length = 532
Score = 50.1 bits (118), Expect = 3e-06
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Frame = +2
Query: 137 LDGDS*LV*LPKRMDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSV 316
+DG L + K K+ VP KL Q ++ NE ++ P V
Sbjct: 41 IDGPRFLNLAENDIQKFPKLRVPILSKLSQ------EINKNEE------RRSIFTRKPQV 88
Query: 317 PRRDYASESPADEEEQWSDDFDSDYENPDEHSDSE---MYVLPAEE-----AGDDSYEPP 472
R +ES ++ WS + DYE+P++ +D+E Y P EE D YEPP
Sbjct: 89 QRFPEETESHEEDNGGWSSFEEDDYESPNDDADAEDDGDYESPNEEEEAPLEDDADYEPP 148
Query: 473 PAEQE---TRTVHPALPFT--RGEYVDNRSSQR-QSPPF--SKTLPSKPSWP 604
P+ E ++ PA P + Y+D ++ + Q PP + +PS P P
Sbjct: 149 PSNDEEALQNSILPAKPLSNPNSMYIDRPATGKVQQPPVPPQRPMPSLPPLP 200
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,571,308
Number of extensions: 1007804
Number of successful extensions: 4670
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4560
Number of HSP's successfully gapped: 2
Length of query: 329
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,273,310
Effective search space: 3225768060
Effective search space used: 3225768060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008871
(987 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543943.2| PREDICTED: similar to B-cell linker [Canis fami... 342 3e-94
Alignment gi|XP_546244.2| PREDICTED: similar to Lymphocyte cytosolic prot... 52 9e-07
Alignment gi|XP_866864.1| PREDICTED: similar to Lymphocyte cytosolic prot... 52 9e-07
Alignment gi|XP_866852.1| PREDICTED: similar to Lymphocyte cytosolic prot... 52 9e-07
>ref|XP_543943.2| PREDICTED: similar to B-cell linker [Canis familiaris].
Length = 484
Score = 342 bits (877), Expect = 3e-94
Identities = 177/255 (69%), Positives = 186/255 (72%)
Frame = +2
Query: 221 RQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADEEEQWSDDFDSDYENP 400
RQLQK+VHD+KNNEGGIMNKIKKLKVKAPPSVP+RDYASE+P DEEEQWSDDFDSDYE+P
Sbjct: 45 RQLQKMVHDIKNNEGGIMNKIKKLKVKAPPSVPQRDYASENPVDEEEQWSDDFDSDYEHP 104
Query: 401 DEHSDSEMYVLPAEEAGDDSYEPPPAEQETRTVHPALPFTRGEYVDNRSSQRQSPPFSKT 580
DEHSDSEMYVLPAEE GDDSYEPPPAEQETRTVHPALPF RGEYVDNRSSQRQSPP S T
Sbjct: 105 DEHSDSEMYVLPAEETGDDSYEPPPAEQETRTVHPALPFARGEYVDNRSSQRQSPPISMT 164
Query: 581 LPSKPSWPXXXXXXXXXXXXXXXXXXXXXXXXQVPPKPKDLLEDEADYVVPVEDEDENYI 760
LPSKP WP QVPPKP++ LEDE DYVVPVED DENYI
Sbjct: 165 LPSKPDWP---PPKAKARLTSTLPALTSLQKPQVPPKPRE-LEDEVDYVVPVEDGDENYI 220
Query: 761 HPTEDSSPPSEKAPMVNRXXXXXXXXXXXXXXGTASGRSSGAWDXXXXXXXXXXXXXXXX 940
HPTE SS P+EKAPMVNR GTASGR+SGAWD
Sbjct: 221 HPTEGSSLPAEKAPMVNRSTKPSNSSKPASPPGTASGRNSGAWD-AKSSSPAAPSPLPRA 279
Query: 941 GKKPAMQLKTTPSAS 985
GKKP LKTTP AS
Sbjct: 280 GKKPVTPLKTTPVAS 294
>ref|XP_546244.2| PREDICTED: similar to Lymphocyte cytosolic protein 2 (SH2
domain-containing leucocyte protein of 76 kDa) (SLP-76
tyrosine phosphoprotein) (SLP76) isoform 1 [Canis
familiaris].
Length = 526
Score = 52.0 bits (123), Expect = 9e-07
Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 11/167 (6%)
Frame = +2
Query: 137 LDGDS*LV*LPKRMDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSV 316
+DG L + K K+ VP KL Q ++ NE ++ P V
Sbjct: 41 IDGQRFLNLTENDIQKFPKLRVPILSKLSQ------EINKNEE------RRSIFTRKPQV 88
Query: 317 PRRDYASESPADEEEQWSDDFDSDYENPDEHSDSE---MYVLPAEE-----AGDDSYEPP 472
PR +ES ++ WS F+ DYE+P + D E Y P EE D YEPP
Sbjct: 89 PRFPEETESHEEDNGGWSS-FEDDYESPTDDQDGEDNDDYESPNEEEEAPVEDDADYEPP 147
Query: 473 PAEQE---TRTVHPALPFTRGEYVDNRSSQRQSPPFSKTLPSKPSWP 604
P+ E ++ PA PF ++ S+ PP SK +P +P P
Sbjct: 148 PSNDEEALQSSILPAKPFP-----NSNSTYIDRPPTSK-VPQQPPVP 188
>ref|XP_866864.1| PREDICTED: similar to Lymphocyte cytosolic protein 2 (SH2
domain-containing leucocyte protein of 76 kDa) (SLP-76
tyrosine phosphoprotein) (SLP76) isoform 4 [Canis
familiaris].
Length = 533
Score = 52.0 bits (123), Expect = 9e-07
Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Frame = +2
Query: 137 LDGDS*LV*LPKRMDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSV 316
+DG L + K K+ VP KL Q ++ NE ++ P V
Sbjct: 41 IDGQRFLNLTENDIQKFPKLRVPILSKLSQ------EINKNEE------RRSIFTRKPQV 88
Query: 317 PRRDYASESPADEEEQWSDDFDSDYENPDEHSDSE---MYVLPAEE-----AGDDSYEPP 472
PR +ES ++ WS + DYE+P + D E Y P EE D YEPP
Sbjct: 89 PRFPEETESHEEDNGGWSSFEEDDYESPTDDQDGEDNDDYESPNEEEEAPVEDDADYEPP 148
Query: 473 PAEQE---TRTVHPALPFTRGEYVDNRSSQRQSPPFSKTLPSKPSWP 604
P+ E ++ PA PF ++ S+ PP SK +P +P P
Sbjct: 149 PSNDEEALQSSILPAKPFP-----NSNSTYIDRPPTSK-VPQQPPVP 189
>ref|XP_866852.1| PREDICTED: similar to Lymphocyte cytosolic protein 2 (SH2
domain-containing leucocyte protein of 76 kDa) (SLP-76
tyrosine phosphoprotein) (SLP76) isoform 3 [Canis
familiaris].
Length = 532
Score = 52.0 bits (123), Expect = 9e-07
Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 11/167 (6%)
Frame = +2
Query: 137 LDGDS*LV*LPKRMDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSV 316
+DG L + K K+ VP KL Q ++ NE ++ P V
Sbjct: 41 IDGQRFLNLTENDIQKFPKLRVPILSKLSQ------EINKNEE------RRSIFTRKPQV 88
Query: 317 PRRDYASESPADEEEQWSDDFDSDYENPDEHSDSE---MYVLPAEE-----AGDDSYEPP 472
PR +ES ++ WS F+ DYE+P + D E Y P EE D YEPP
Sbjct: 89 PRFPEETESHEEDNGGWSS-FEDDYESPTDDQDGEDNDDYESPNEEEEAPVEDDADYEPP 147
Query: 473 PAEQE---TRTVHPALPFTRGEYVDNRSSQRQSPPFSKTLPSKPSWP 604
P+ E ++ PA PF ++ S+ PP SK +P +P P
Sbjct: 148 PSNDEEALQSSILPAKPFP-----NSNSTYIDRPPTSK-VPQQPPVP 188
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,269,028
Number of extensions: 1045920
Number of successful extensions: 5247
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5020
Number of HSP's successfully gapped: 4
Length of query: 329
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 226
Effective length of database: 15,440,896
Effective search space: 3489642496
Effective search space used: 3489642496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008871
(987 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928268.1| PREDICTED: b-cell linker protein [Sus scrofa]. 425 e-119
Alignment gi|XP_003134116.2| PREDICTED: LOW QUALITY PROTEIN: lymphocyte c... 50 2e-06
>ref|XP_001928268.1| PREDICTED: b-cell linker protein [Sus scrofa].
Length = 463
Score = 425 bits (1093), Expect = e-119
Identities = 215/270 (79%), Positives = 215/270 (79%)
Frame = +2
Query: 176 MDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE 355
MDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE
Sbjct: 1 MDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE 60
Query: 356 EEQWSDDFDSDYENPDEHSDSEMYVLPAEEAGDDSYEPPPAEQETRTVHPALPFTRGEYV 535
EEQWSDDFDSDYENPDEHSDSEMYVLPAEEAGDDSYEPPPAEQETRTVHPALPFTRGEYV
Sbjct: 61 EEQWSDDFDSDYENPDEHSDSEMYVLPAEEAGDDSYEPPPAEQETRTVHPALPFTRGEYV 120
Query: 536 DNRSSQRQSPPFSKTLPSKPSWPXXXXXXXXXXXXXXXXXXXXXXXXQVPPKPKDLLEDE 715
DNRSSQRQSPPFSKTLPSKPSWP QVPPKPKDLLEDE
Sbjct: 121 DNRSSQRQSPPFSKTLPSKPSWPSAKARLVALPAAATLPAPTSLPKPQVPPKPKDLLEDE 180
Query: 716 ADYVVPVEDEDENYIHPTEDSSPPSEKAPMVNRXXXXXXXXXXXXXXGTASGRSSGAWDX 895
ADYVVPVEDEDENYIHPTEDSSPPSEKAPMVNR GTASGRSSGAWD
Sbjct: 181 ADYVVPVEDEDENYIHPTEDSSPPSEKAPMVNRSTKPNNSSKPASPPGTASGRSSGAWDS 240
Query: 896 XXXXXXXXXXXXXXXGKKPAMQLKTTPSAS 985
GKKPAMQLKTTP AS
Sbjct: 241 KSTSSPAAPSPLPRAGKKPAMQLKTTPVAS 270
>ref|XP_003134116.2| PREDICTED: LOW QUALITY PROTEIN: lymphocyte cytosolic protein 2 [Sus
scrofa].
Length = 532
Score = 50.1 bits (118), Expect = 2e-06
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = +2
Query: 308 PSVPRRDYASESPADEEEQWSDDFDSDYENPDEHSDSE---MYVLPAEEAG-----DDSY 463
P V R +ES ++ WS + DYE+P+E D E Y P EE D Y
Sbjct: 86 PQVQRFPEETESHEEDNGGWSSFEEDDYESPNEDQDGEDDGDYESPNEEEAAPMEDDADY 145
Query: 464 EPPPAEQE---TRTVHPALPFTRGE--YVDN-RSSQRQSPPFSKTLP 586
EPPP+ E ++ PA PF+ Y+D S + Q PP P
Sbjct: 146 EPPPSNDEEALQNSILPAKPFSNSNSMYIDRPASGKAQQPPVPPQRP 192
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,602,348
Number of extensions: 651929
Number of successful extensions: 2929
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2853
Number of HSP's successfully gapped: 2
Length of query: 329
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,879,129
Effective search space: 2042199670
Effective search space used: 2042199670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008871
(987 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032554.2| B-cell linker protein [Mus musculus]. 378 e-105
>ref|NP_032554.2| B-cell linker protein [Mus musculus].
Length = 457
Score = 378 bits (970), Expect = e-105
Identities = 191/267 (71%), Positives = 200/267 (74%)
Frame = +2
Query: 176 MDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE 355
MDKLNKITVPASQKLRQLQK+VHD+KNNEGGIM+KIKKLKVK PPSVPRRDYA +SPADE
Sbjct: 1 MDKLNKITVPASQKLRQLQKMVHDIKNNEGGIMDKIKKLKVKGPPSVPRRDYALDSPADE 60
Query: 356 EEQWSDDFDSDYENPDEHSDSEMYVLPAEEAGDDSYEPPPAEQETRTVHPALPFTRGEYV 535
EEQWSDDFDSDYENPDEHSDSEMYV+PAEE GDDSYEPPPAEQ+TR VHPALPFTRGEYV
Sbjct: 61 EEQWSDDFDSDYENPDEHSDSEMYVMPAEETGDDSYEPPPAEQQTRVVHPALPFTRGEYV 120
Query: 536 DNRSSQRQSPPFSKTLPSKPSWPXXXXXXXXXXXXXXXXXXXXXXXXQVPPKPKDLLEDE 715
DNRSSQR SPPFSKTLPSKPSWP QVPPKPKDLLEDE
Sbjct: 121 DNRSSQRHSPPFSKTLPSKPSWP-----SAKARLASTLPAPNSLQKPQVPPKPKDLLEDE 175
Query: 716 ADYVVPVEDEDENYIHPTEDSSPPSEKAPMVNRXXXXXXXXXXXXXXGTASGRSSGAWDX 895
ADYVVPVED DENYIHP E S PP+EKAPMVNR GT +GR+SG WD
Sbjct: 176 ADYVVPVEDNDENYIHPRESSPPPAEKAPMVNRSTKPNSSSKHMSPPGTVAGRNSGVWD- 234
Query: 896 XXXXXXXXXXXXXXXGKKPAMQLKTTP 976
GKKPA LKTTP
Sbjct: 235 SKSSLPAAPSPLPRAGKKPATPLKTTP 261
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,640,711
Number of extensions: 851774
Number of successful extensions: 4006
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3885
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 227
Effective length of database: 12,553,887
Effective search space: 2849732349
Effective search space used: 2849732349
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008871
(987 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037446.1| B-cell linker protein isoform 1 [Homo sapiens]. 379 e-105
Alignment gi|NP_001107566.1| B-cell linker protein isoform 2 [Homo sapien... 355 3e-98
Alignment gi|NP_005556.1| lymphocyte cytosolic protein 2 [Homo sapiens]. 52 8e-07
>ref|NP_037446.1| B-cell linker protein isoform 1 [Homo sapiens].
Length = 456
Score = 379 bits (972), Expect = e-105
Identities = 196/270 (72%), Positives = 202/270 (74%)
Frame = +2
Query: 176 MDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE 355
MDKLNKITVPASQKLRQLQK+VHD+KNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE
Sbjct: 1 MDKLNKITVPASQKLRQLQKMVHDIKNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE 60
Query: 356 EEQWSDDFDSDYENPDEHSDSEMYVLPAEEAGDDSYEPPPAEQETRTVHPALPFTRGEYV 535
EEQWSDDFDSDYENPDEHSDSEMYV+PAEE DDSYEPPP EQETR VHPALPF RGEY+
Sbjct: 61 EEQWSDDFDSDYENPDEHSDSEMYVMPAEENADDSYEPPPVEQETRPVHPALPFARGEYI 120
Query: 536 DNRSSQRQSPPFSKTLPSKPSWPXXXXXXXXXXXXXXXXXXXXXXXXQVPPKPKDLLEDE 715
DNRSSQR SPPFSKTLPSKPSWP QVPPKPK LLEDE
Sbjct: 121 DNRSSQRHSPPFSKTLPSKPSWP-----SEKARLTSTLPALTALQKPQVPPKPKGLLEDE 175
Query: 716 ADYVVPVEDEDENYIHPTEDSSPPSEKAPMVNRXXXXXXXXXXXXXXGTASGRSSGAWDX 895
ADYVVPVED DENYIHPTE SSPP EKAPMVNR GTASGR+SGAW+
Sbjct: 176 ADYVVPVEDNDENYIHPTESSSPPPEKAPMVNR-STKPNSSTPASPPGTASGRNSGAWE- 233
Query: 896 XXXXXXXXXXXXXXXGKKPAMQLKTTPSAS 985
GKKP LKTTP AS
Sbjct: 234 TKSPPPAAPSPLPRAGKKPTTPLKTTPVAS 263
>ref|NP_001107566.1| B-cell linker protein isoform 2 [Homo sapiens].
Length = 433
Score = 355 bits (912), Expect = 3e-98
Identities = 186/270 (68%), Positives = 192/270 (71%)
Frame = +2
Query: 176 MDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE 355
MDKLNKITVPASQKLRQLQK+VHD+KNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE
Sbjct: 1 MDKLNKITVPASQKLRQLQKMVHDIKNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE 60
Query: 356 EEQWSDDFDSDYENPDEHSDSEMYVLPAEEAGDDSYEPPPAEQETRTVHPALPFTRGEYV 535
EEQWSDDFDSDYENPDEHSDSEMYV+PAEE DDSYEPPP EQETR VHPALPF RGEY+
Sbjct: 61 EEQWSDDFDSDYENPDEHSDSEMYVMPAEENADDSYEPPPVEQETRPVHPALPFARGEYI 120
Query: 536 DNRSSQRQSPPFSKTLPSKPSWPXXXXXXXXXXXXXXXXXXXXXXXXQVPPKPKDLLEDE 715
DNRSSQR SPPFSKTLPSKPSWP QVPPKPK LLEDE
Sbjct: 121 DNRSSQRHSPPFSKTLPSKPSWP-----SEKARLTSTLPALTALQKPQVPPKPKGLLEDE 175
Query: 716 ADYVVPVEDEDENYIHPTEDSSPPSEKAPMVNRXXXXXXXXXXXXXXGTASGRSSGAWDX 895
ADYVVPVED DENYIHPTE SSPP EK GR+SGAW+
Sbjct: 176 ADYVVPVEDNDENYIHPTESSSPPPEK------------------------GRNSGAWE- 210
Query: 896 XXXXXXXXXXXXXXXGKKPAMQLKTTPSAS 985
GKKP LKTTP AS
Sbjct: 211 TKSPPPAAPSPLPRAGKKPTTPLKTTPVAS 240
>ref|NP_005556.1| lymphocyte cytosolic protein 2 [Homo sapiens].
Length = 533
Score = 52.0 bits (123), Expect = 8e-07
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Frame = +2
Query: 176 MDKLNKITVPASQKLRQLQKIVHDMKNNEGGIMNKIKKLKVKAPPSVPRRDYASESPADE 355
+ K K+ VP KL Q ++ NE ++ P VPR +ES ++
Sbjct: 54 IQKFPKLRVPILSKLSQ------EINKNEE------RRSIFTRKPQVPRFPEETESHEED 101
Query: 356 EEQWSDDFDSDYENPDEHSDSE---MYVLPAEE-----AGDDSYEPPPAEQE---TRTVH 502
WS + DYE+P++ D E Y P EE D YEPPP+ E ++
Sbjct: 102 NGGWSSFEEDDYESPNDDQDGEDDGDYESPNEEEEAPVEDDADYEPPPSNDEEALQNSIL 161
Query: 503 PALPF--TRGEYVDNRSSQRQSPPFSKTLPSKPSWP 604
PA PF + Y+D PP KT P +P P
Sbjct: 162 PAKPFPNSNSMYIDR-------PPSGKT-PQQPPVP 189
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,425,590
Number of extensions: 1019976
Number of successful extensions: 4719
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4577
Number of HSP's successfully gapped: 3
Length of query: 329
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,901,872
Effective search space: 3367823072
Effective search space used: 3367823072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008871
(987 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 442 e-121
>Sscrofa_Chr14
|| Length = 153851969
Score = 442 bits (223), Expect = e-121
Identities = 223/223 (100%)
Strand = Plus / Minus
Query: 1 ttttacttctccctagtgcaggggtgtgtgccagcaggctgcactctcagaaatcagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117349979 ttttacttctccctagtgcaggggtgtgtgccagcaggctgcactctcagaaatcagtct 117349920
Query: 61 caagtgactgggacccttgcgatcaagggcttaccatgctactcccaaagagcgccaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117349919 caagtgactgggacccttgcgatcaagggcttaccatgctactcccaaagagcgccaagg 117349860
Query: 121 accactgacattaccactggacggtgattcgtagcttgtataattaccaaaaagaatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117349859 accactgacattaccactggacggtgattcgtagcttgtataattaccaaaaagaatgga 117349800
Query: 181 caagcttaataaaataactgtccccgccagccagaagctgagg 223
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117349799 caagcttaataaaataactgtccccgccagccagaagctgagg 117349757
Score = 361 bits (182), Expect = 5e-97
Identities = 182/182 (100%)
Strand = Plus / Minus
Query: 535 agacaatcgatcaagccagaggcagtctccgcccttcagcaagaccctgcccagtaaacc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117300306 agacaatcgatcaagccagaggcagtctccgcccttcagcaagaccctgcccagtaaacc 117300247
Query: 595 cagctggccttcagcaaaagcgaggctggtcgctctgccggccgcagccactctgccggc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117300246 cagctggccttcagcaaaagcgaggctggtcgctctgccggccgcagccactctgccggc 117300187
Query: 655 cccaacctctctgccaaaacctcaagtcccacccaaacccaaagacctcctggaggatga 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117300186 cccaacctctctgccaaaacctcaagtcccacccaaacccaaagacctcctggaggatga 117300127
Query: 715 gg 716
||
Sbjct: 117300126 gg 117300125
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 380 gacagcgattacgaaaatccagacgagcactcagactctgagatgtatgtgctgccggct 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117303220 gacagcgattacgaaaatccagacgagcactcagactctgagatgtatgtgctgccggct 117303161
Query: 440 gaggaggccggggatgacagctatgagccgccgcccgctgaacaggagacacggacagtt 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117303160 gaggaggccggggatgacagctatgagccgccgcccgctgaacaggagacacggacagtt 117303101
Query: 500 cacccggccctgcccttcaccagaggggagtacgtag 536
|||||||||||||||||||||||||||||||||||||
Sbjct: 117303100 cacccggccctgcccttcaccagaggggagtacgtag 117303064
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 714 aggctgattatgtggtccctgtggaagatgaagatgaaaactatattcatcccacagaag 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117293417 aggctgattatgtggtccctgtggaagatgaagatgaaaactatattcatcccacagaag 117293358
Query: 774 acagttcacccccatctgaaaaag 797
||||||||||||||||||||||||
Sbjct: 117293357 acagttcacccccatctgaaaaag 117293334
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 867 caggtcgaagcagtggggcctgggactctaagtcaacttcatcaccggctgcgccgtccc 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117284994 caggtcgaagcagtggggcctgggactctaagtcaacttcatcaccggctgcgccgtccc 117284935
Query: 927 cactgcccagggccggg 943
|||||||||||||||||
Sbjct: 117284934 cactgcccagggccggg 117284918
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 796 agctcccatggtgaatagatcaaccaagccaaataactcctcaaagccagcctctcctcc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117292131 agctcccatggtgaatagatcaaccaagccaaataactcctcaaagccagcctctcctcc 117292072
Query: 856 agggacagcttcaggt 871
||||||||||||||||
Sbjct: 117292071 agggacagcttcaggt 117292056
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 221 aggcagcttcaaaaaatagttcatgacatgaagaacaatgaaggtggaataatgaacaag 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117322698 aggcagcttcaaaaaatagttcatgacatgaagaacaatgaaggtggaataatgaacaag 117322639
Query: 281 atcaaaaag 289
|||||||||
Sbjct: 117322638 atcaaaaag 117322630
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 289 gctgaaagtcaaagcacctccaagtgttcctcgaagggattatgcctcag 338
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117318608 gctgaaagtcaaagcacctccaagtgttcctcgaagggattatgcctcag 117318559
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 335 tcagagagcccagctgacgaagaggagcagtggtcagatgactttg 380
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117308510 tcagagagcccagctgacgaagaggagcagtggtcagatgactttg 117308465
Score = 58.0 bits (29), Expect = 1e-05
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 942 ggaaaaaaccagctatgcaactgaagaca 970
|||||||||||||||||||||||||||||
Sbjct: 117282938 ggaaaaaaccagctatgcaactgaagaca 117282910
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,859,435
Number of extensions: 156
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 10
Length of query: 987
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 966
Effective length of database: 2,808,413,156
Effective search space: 2712927108696
Effective search space used: 2712927108696
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)