Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008873
(1042 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002693035.1| PREDICTED: asparagine-linked glycosylation 9... 511 e-145
Alignment gi|XP_001787665.2| PREDICTED: hypothetical protein [Bos taurus]. 270 2e-72
>ref|XP_002693035.1| PREDICTED: asparagine-linked glycosylation 9,
alpha-1,2-mannosyltransferase homolog (S. cerevisiae)
[Bos taurus].
Length = 844
Score = 511 bits (1316), Expect = e-145
Identities = 252/301 (83%), Positives = 255/301 (84%)
Frame = +2
Query: 74 LAMASRGARQRLKXXXXXXXXXXXXXXKLRELLCSREAGGAEPRPELSGNKAGQVWAPEG 253
LAMASRGARQRLK KLRELLCSREAG AEPRPELSGNKAGQVWAPEG
Sbjct: 232 LAMASRGARQRLKGSGGSGGDTASAADKLRELLCSREAGSAEPRPELSGNKAGQVWAPEG 291
Query: 254 STAFKXXXXXXXXXXXXXNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLL 433
STAFK NISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLL
Sbjct: 292 STAFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLL 351
Query: 434 LHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLV 613
LHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLV
Sbjct: 352 LHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLV 411
Query: 614 LSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSXXXXXXXXXXXXXWPFSAALGLPIA 793
LSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTS WPFSAALGLPIA
Sbjct: 412 LSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSFAVLGVAAGAILGWPFSAALGLPIA 471
Query: 794 FDLLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPTHIGLYNVFTPHGPDLY 973
FDLL+MK RWKSFF WSLVAL+LFLVPVV IDSYYYGKLVIAP +I LYNVFTPHGPDLY
Sbjct: 472 FDLLIMKQRWKSFFHWSLVALVLFLVPVVGIDSYYYGKLVIAPLNIVLYNVFTPHGPDLY 531
Query: 974 G 976
G
Sbjct: 532 G 532
>ref|XP_001787665.2| PREDICTED: hypothetical protein [Bos taurus].
Length = 769
Score = 270 bits (690), Expect = 2e-72
Identities = 132/160 (82%), Positives = 132/160 (82%)
Frame = +2
Query: 74 LAMASRGARQRLKXXXXXXXXXXXXXXKLRELLCSREAGGAEPRPELSGNKAGQVWAPEG 253
LAMASRGARQRLK KLRELLCSREAG AEPRPELSGNKAGQVWAPEG
Sbjct: 232 LAMASRGARQRLKGSGGSGGDTASAADKLRELLCSREAGSAEPRPELSGNKAGQVWAPEG 291
Query: 254 STAFKXXXXXXXXXXXXXNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLL 433
STAFK NISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLL
Sbjct: 292 STAFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLL 351
Query: 434 LHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFY 553
LHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFY
Sbjct: 352 LHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFY 391
Score = 121 bits (304), Expect = 9e-28
Identities = 57/65 (87%), Positives = 60/65 (92%)
Frame = +2
Query: 782 LPIAFDLLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPTHIGLYNVFTPHG 961
LPIAFDLL+MK RWKSFF WSLVAL+LFLVPVV IDSYYYGKLVIAP +I LYNVFTPHG
Sbjct: 393 LPIAFDLLIMKQRWKSFFHWSLVALVLFLVPVVGIDSYYYGKLVIAPLNIVLYNVFTPHG 452
Query: 962 PDLYG 976
PDLYG
Sbjct: 453 PDLYG 457
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,172,194
Number of extensions: 762819
Number of successful extensions: 2342
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2342
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008873
(1042 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850797.1| PREDICTED: similar to disrupted in bipolar diso... 506 e-143
Alignment gi|XP_862316.1| PREDICTED: similar to disrupted in bipolar diso... 506 e-143
>ref|XP_850797.1| PREDICTED: similar to disrupted in bipolar disorder 1 isoform 2
[Canis familiaris].
Length = 611
Score = 506 bits (1303), Expect = e-143
Identities = 248/299 (82%), Positives = 252/299 (84%)
Frame = +2
Query: 80 MASRGARQRLKXXXXXXXXXXXXXXKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGST 259
MASRGARQR K KLRELLCSREA GAEPR ELSGNKAGQVWAPEGST
Sbjct: 1 MASRGARQRPKGVGGSGGDTVSAADKLRELLCSREASGAEPRTELSGNKAGQVWAPEGST 60
Query: 260 AFKXXXXXXXXXXXXXNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLH 439
AFK NISDCDETFNYWEPTHYLIYGKGFQTWEYSP YAIRSYAYLLLH
Sbjct: 61 AFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPVYAIRSYAYLLLH 120
Query: 440 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 619
AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS
Sbjct: 121 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 180
Query: 620 TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSXXXXXXXXXXXXXWPFSAALGLPIAFD 799
TGMFCSSSAFLPSSFCMYTTL+AMTGWYMDKTS WPFSAALGLPIAFD
Sbjct: 181 TGMFCSSSAFLPSSFCMYTTLVAMTGWYMDKTSVAVLGVAAGAILGWPFSAALGLPIAFD 240
Query: 800 LLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPTHIGLYNVFTPHGPDLYG 976
LLVMKHRWKSFF WSLVAL+LFLVPVVVIDSYYYGKLV+AP +I LYNVFTPHGPDLYG
Sbjct: 241 LLVMKHRWKSFFHWSLVALILFLVPVVVIDSYYYGKLVVAPLNIVLYNVFTPHGPDLYG 299
>ref|XP_862316.1| PREDICTED: similar to disrupted in bipolar disorder 1 isoform 3
[Canis familiaris].
Length = 622
Score = 506 bits (1303), Expect = e-143
Identities = 248/299 (82%), Positives = 252/299 (84%)
Frame = +2
Query: 80 MASRGARQRLKXXXXXXXXXXXXXXKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGST 259
MASRGARQR K KLRELLCSREA GAEPR ELSGNKAGQVWAPEGST
Sbjct: 1 MASRGARQRPKGVGGSGGDTVSAADKLRELLCSREASGAEPRTELSGNKAGQVWAPEGST 60
Query: 260 AFKXXXXXXXXXXXXXNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLH 439
AFK NISDCDETFNYWEPTHYLIYGKGFQTWEYSP YAIRSYAYLLLH
Sbjct: 61 AFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPVYAIRSYAYLLLH 120
Query: 440 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 619
AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS
Sbjct: 121 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 180
Query: 620 TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSXXXXXXXXXXXXXWPFSAALGLPIAFD 799
TGMFCSSSAFLPSSFCMYTTL+AMTGWYMDKTS WPFSAALGLPIAFD
Sbjct: 181 TGMFCSSSAFLPSSFCMYTTLVAMTGWYMDKTSVAVLGVAAGAILGWPFSAALGLPIAFD 240
Query: 800 LLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPTHIGLYNVFTPHGPDLYG 976
LLVMKHRWKSFF WSLVAL+LFLVPVVVIDSYYYGKLV+AP +I LYNVFTPHGPDLYG
Sbjct: 241 LLVMKHRWKSFFHWSLVALILFLVPVVVIDSYYYGKLVVAPLNIVLYNVFTPHGPDLYG 299
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,360,890
Number of extensions: 773370
Number of successful extensions: 2227
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2225
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008873
(1042 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129915.2| PREDICTED: alpha-1,2-mannosyltransferase ALG... 513 e-146
Alignment gi|XP_003357338.1| PREDICTED: alpha-1,2-mannosyltransferase ALG... 513 e-146
>ref|XP_003129915.2| PREDICTED: alpha-1,2-mannosyltransferase ALG9 isoform 1 [Sus
scrofa].
Length = 625
Score = 513 bits (1321), Expect = e-146
Identities = 256/306 (83%), Positives = 257/306 (83%), Gaps = 7/306 (2%)
Frame = +2
Query: 80 MASRGARQRLKXXXXXXXXXXXXXXKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGST 259
MASRGARQRLK KLRELLCSREAGGAEPRPELSGNKAGQVWAPEGST
Sbjct: 1 MASRGARQRLKGSGGSGGDPASAADKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGST 60
Query: 260 AFKXXXXXXXXXXXXXNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLH 439
AFK NISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLH
Sbjct: 61 AFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLH 120
Query: 440 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 619
AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS
Sbjct: 121 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 180
Query: 620 TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSXXXXXXXXXXXXXWPFSAALGLPIAFD 799
TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTS WPFSAALGLPIAFD
Sbjct: 181 TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSAALGLPIAFD 240
Query: 800 LLVMKHRWKSFFRWSLVALML-------FLVPVVVIDSYYYGKLVIAPTHIGLYNVFTPH 958
LLVMKHRWKSFFRWSLVALML FLVPVVVIDSYYYGKLVIAP +I LYNVFTPH
Sbjct: 241 LLVMKHRWKSFFRWSLVALMLFSGEFSFFLVPVVVIDSYYYGKLVIAPLNIVLYNVFTPH 300
Query: 959 GPDLYG 976
GPDLYG
Sbjct: 301 GPDLYG 306
>ref|XP_003357338.1| PREDICTED: alpha-1,2-mannosyltransferase ALG9 isoform 2 [Sus
scrofa].
Length = 618
Score = 513 bits (1321), Expect = e-146
Identities = 256/306 (83%), Positives = 257/306 (83%), Gaps = 7/306 (2%)
Frame = +2
Query: 80 MASRGARQRLKXXXXXXXXXXXXXXKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGST 259
MASRGARQRLK KLRELLCSREAGGAEPRPELSGNKAGQVWAPEGST
Sbjct: 1 MASRGARQRLKGSGGSGGDPASAADKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGST 60
Query: 260 AFKXXXXXXXXXXXXXNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLH 439
AFK NISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLH
Sbjct: 61 AFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLH 120
Query: 440 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 619
AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS
Sbjct: 121 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 180
Query: 620 TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSXXXXXXXXXXXXXWPFSAALGLPIAFD 799
TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTS WPFSAALGLPIAFD
Sbjct: 181 TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSAALGLPIAFD 240
Query: 800 LLVMKHRWKSFFRWSLVALML-------FLVPVVVIDSYYYGKLVIAPTHIGLYNVFTPH 958
LLVMKHRWKSFFRWSLVALML FLVPVVVIDSYYYGKLVIAP +I LYNVFTPH
Sbjct: 241 LLVMKHRWKSFFRWSLVALMLFSGEFSFFLVPVVVIDSYYYGKLVIAPLNIVLYNVFTPH 300
Query: 959 GPDLYG 976
GPDLYG
Sbjct: 301 GPDLYG 306
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,277,511
Number of extensions: 483672
Number of successful extensions: 1494
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1492
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008873
(1042 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598742.1| alpha-1,2-mannosyltransferase ALG9 [Mus musculu... 468 e-132
>ref|NP_598742.1| alpha-1,2-mannosyltransferase ALG9 [Mus musculus].
Length = 611
Score = 468 bits (1204), Expect = e-132
Identities = 238/301 (79%), Positives = 242/301 (80%), Gaps = 2/301 (0%)
Frame = +2
Query: 80 MASRGARQRLKXXXXXXXXXXXXXXKLREL--LCSREAGGAEPRPELSGNKAGQVWAPEG 253
MASR ARQRLK +L L SREAG AEPRPE SGNKAGQVWAPEG
Sbjct: 1 MASRRARQRLKGGGGGGGGGGDAGPAAEKLEQLGSREAG-AEPRPE-SGNKAGQVWAPEG 58
Query: 254 STAFKXXXXXXXXXXXXXNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLL 433
STAFK NISDCDETFNYWEPTHYLIYGKGFQTWEYSP YAIRSYAYLL
Sbjct: 59 STAFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPVYAIRSYAYLL 118
Query: 434 LHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLV 613
LHAWPAAFHARILQTNKILVFYFLRCLLAFVSC+CELYFYKAVCKKFGLHVSRMMLAFLV
Sbjct: 119 LHAWPAAFHARILQTNKILVFYFLRCLLAFVSCVCELYFYKAVCKKFGLHVSRMMLAFLV 178
Query: 614 LSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSXXXXXXXXXXXXXWPFSAALGLPIA 793
LSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKT WPFSAALGLPIA
Sbjct: 179 LSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTPIAVLGVAAGAILGWPFSAALGLPIA 238
Query: 794 FDLLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPTHIGLYNVFTPHGPDLY 973
FDLL KHRWKSF WSLVAL LFLVPVVVIDSYYYGKLV+AP +I LYNVFT HGPDLY
Sbjct: 239 FDLLARKHRWKSFLLWSLVALALFLVPVVVIDSYYYGKLVVAPLNIVLYNVFTSHGPDLY 298
Query: 974 G 976
G
Sbjct: 299 G 299
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,243,776
Number of extensions: 676186
Number of successful extensions: 2160
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2159
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008873
(1042 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071158.1| alpha-1,2-mannosyltransferase ALG9 isoform b... 503 e-142
Alignment gi|NP_079016.2| alpha-1,2-mannosyltransferase ALG9 isoform a [H... 503 e-142
Alignment gi|NP_001071160.1| alpha-1,2-mannosyltransferase ALG9 isoform d... 224 1e-58
Alignment gi|NP_001071159.1| alpha-1,2-mannosyltransferase ALG9 isoform c... 224 1e-58
>ref|NP_001071158.1| alpha-1,2-mannosyltransferase ALG9 isoform b [Homo sapiens].
Length = 611
Score = 503 bits (1294), Expect = e-142
Identities = 249/299 (83%), Positives = 253/299 (84%)
Frame = +2
Query: 80 MASRGARQRLKXXXXXXXXXXXXXXKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGST 259
MASRGARQRLK KLRELL SREAGGAE R ELSGNKAGQVWAPEGST
Sbjct: 1 MASRGARQRLKGSGASSGDTAPAADKLRELLGSREAGGAEHRTELSGNKAGQVWAPEGST 60
Query: 260 AFKXXXXXXXXXXXXXNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLH 439
AFK NISDCDETFNYWEPTHYLIYG+GFQTWEYSPAYAIRSYAYLLLH
Sbjct: 61 AFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGEGFQTWEYSPAYAIRSYAYLLLH 120
Query: 440 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 619
AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS
Sbjct: 121 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 180
Query: 620 TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSXXXXXXXXXXXXXWPFSAALGLPIAFD 799
TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTS WPFSAALGLPIAFD
Sbjct: 181 TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSAALGLPIAFD 240
Query: 800 LLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPTHIGLYNVFTPHGPDLYG 976
LLVMKHRWKSFF WSL+AL+LFLVPVVVIDSYYYGKLVIAP +I LYNVFTPHGPDLYG
Sbjct: 241 LLVMKHRWKSFFHWSLMALILFLVPVVVIDSYYYGKLVIAPLNIVLYNVFTPHGPDLYG 299
>ref|NP_079016.2| alpha-1,2-mannosyltransferase ALG9 isoform a [Homo sapiens].
Length = 618
Score = 503 bits (1294), Expect = e-142
Identities = 249/299 (83%), Positives = 253/299 (84%)
Frame = +2
Query: 80 MASRGARQRLKXXXXXXXXXXXXXXKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGST 259
MASRGARQRLK KLRELL SREAGGAE R ELSGNKAGQVWAPEGST
Sbjct: 1 MASRGARQRLKGSGASSGDTAPAADKLRELLGSREAGGAEHRTELSGNKAGQVWAPEGST 60
Query: 260 AFKXXXXXXXXXXXXXNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLH 439
AFK NISDCDETFNYWEPTHYLIYG+GFQTWEYSPAYAIRSYAYLLLH
Sbjct: 61 AFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGEGFQTWEYSPAYAIRSYAYLLLH 120
Query: 440 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 619
AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS
Sbjct: 121 AWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLS 180
Query: 620 TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSXXXXXXXXXXXXXWPFSAALGLPIAFD 799
TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTS WPFSAALGLPIAFD
Sbjct: 181 TGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSAALGLPIAFD 240
Query: 800 LLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPTHIGLYNVFTPHGPDLYG 976
LLVMKHRWKSFF WSL+AL+LFLVPVVVIDSYYYGKLVIAP +I LYNVFTPHGPDLYG
Sbjct: 241 LLVMKHRWKSFFHWSLMALILFLVPVVVIDSYYYGKLVIAPLNIVLYNVFTPHGPDLYG 299
>ref|NP_001071160.1| alpha-1,2-mannosyltransferase ALG9 isoform d [Homo sapiens].
Length = 440
Score = 224 bits (570), Expect = 1e-58
Identities = 109/128 (85%), Positives = 112/128 (87%)
Frame = +2
Query: 593 MMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSXXXXXXXXXXXXXWPFSA 772
MMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTS WPFSA
Sbjct: 1 MMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSA 60
Query: 773 ALGLPIAFDLLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPTHIGLYNVFT 952
ALGLPIAFDLLVMKHRWKSFF WSL+AL+LFLVPVVVIDSYYYGKLVIAP +I LYNVFT
Sbjct: 61 ALGLPIAFDLLVMKHRWKSFFHWSLMALILFLVPVVVIDSYYYGKLVIAPLNIVLYNVFT 120
Query: 953 PHGPDLYG 976
PHGPDLYG
Sbjct: 121 PHGPDLYG 128
>ref|NP_001071159.1| alpha-1,2-mannosyltransferase ALG9 isoform c [Homo sapiens].
Length = 447
Score = 224 bits (570), Expect = 1e-58
Identities = 109/128 (85%), Positives = 112/128 (87%)
Frame = +2
Query: 593 MMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSXXXXXXXXXXXXXWPFSA 772
MMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTS WPFSA
Sbjct: 1 MMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSA 60
Query: 773 ALGLPIAFDLLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPTHIGLYNVFT 952
ALGLPIAFDLLVMKHRWKSFF WSL+AL+LFLVPVVVIDSYYYGKLVIAP +I LYNVFT
Sbjct: 61 ALGLPIAFDLLVMKHRWKSFFHWSLMALILFLVPVVVIDSYYYGKLVIAPLNIVLYNVFT 120
Query: 953 PHGPDLYG 976
PHGPDLYG
Sbjct: 121 PHGPDLYG 128
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,005,009
Number of extensions: 778086
Number of successful extensions: 2191
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2191
Number of HSP's successfully gapped: 4
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008873
(1042 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 420 e-115
>Sscrofa_Chr09
|| Length = 153670197
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 1 gtttgccatcccaggctatatgtctccgtgctcgtcgctttcgtagggtgccgagatcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44410342 gtttgccatcccaggctatatgtctccgtgctcgtcgctttcgtagggtgccgagatcta 44410283
Query: 61 gcttttttccgcgcttgccatggcgagccgaggggcccggcagcgcctgaagggcagtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44410282 gcttttttccgcgcttgccatggcgagccgaggggcccggcagcgcctgaagggcagtgg 44410223
Query: 121 gggcagcggcggggacccggcctcggccgccgacaagctacgggagctgctgtgcagccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44410222 gggcagcggcggggacccggcctcggccgccgacaagctacgggagctgctgtgcagccg 44410163
Query: 181 ggaggcgggcggcgcggagccccggcccgagt 212
||||||||||||||||||||||||||||||||
Sbjct: 44410162 ggaggcgggcggcgcggagccccggcccgagt 44410131
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 211 gttatctgggaacaaagcaggacaagtctgggcacctgaaggatctactgctttcaagtg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44409274 gttatctgggaacaaagcaggacaagtctgggcacctgaaggatctactgctttcaagtg 44409215
Query: 271 tctgctctcagcaaggctgtgtgctgctcttctgagcaacatctccgactgtgatgaaac 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44409214 tctgctctcagcaaggctgtgtgctgctcttctgagcaacatctccgactgtgatgaaac 44409155
Query: 331 attcaactactgggaacca 349
|||||||||||||||||||
Sbjct: 44409154 attcaactactgggaacca 44409136
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 350 acacactacctcatctatgggaaggggtttcagacttgggaatattccccagcttatgcc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44408065 acacactacctcatctatgggaaggggtttcagacttgggaatattccccagcttatgcc 44408006
Query: 410 attcgctcctatgcttacctgttgcttcatgcctggccagctgcatttcatgcgagaatt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44408005 attcgctcctatgcttacctgttgcttcatgcctggccagctgcatttcatgcgagaatt 44407946
Query: 470 ttacaaactaataag 484
|||||||||||||||
Sbjct: 44407945 ttacaaactaataag 44407931
Score = 264 bits (133), Expect = 9e-68
Identities = 139/141 (98%)
Strand = Plus / Minus
Query: 642 cagcattccttcctagcagcttctgcatgtacactaccttgatagccatgactggctggt 701
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 44398629 cagcattccttcctagcagcttctgtatgtacactaccttgatagccatgactggctggt 44398570
Query: 702 atatggacaaaacttccattgctgtgcttggagtagcagctggggctatcttaggctggc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44398569 atatggacaaaacttccattgctgtgcttggagtagcagctggggctatcttaggctggc 44398510
Query: 762 cattcagtgcggctcttgggt 782
||||||| |||||||||||||
Sbjct: 44398509 cattcagcgcggctcttgggt 44398489
Score = 196 bits (99), Expect = 2e-47
Identities = 161/176 (91%), Gaps = 5/176 (2%)
Strand = Plus / Minus
Query: 868 ggtgcctgtggtagtcattgacagctactattatgggaagttggtgattgcacccactca 927
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 44396036 ggtgcctgtggtggtcattgacagctactattatgggaagttggtgattgcacc-actca 44395978
Query: 928 -cattggtctgtataatgtctttactcctcatggacctgatctttatggntagacctttt 986
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 44395977 acattgttctgtataatgtctttactcctcatggacctgatctttatggtaagacctttt 44395918
Query: 987 gaaaattgnnnggagag-taggagatagattattttg-ctcagctttgaaatttta 1040
|||| ||| | |||| |||||||||||||| |||| | ||||||||||||||||
Sbjct: 44395917 gaaatttg-gggaagagttaggagatagattaatttgccccagctttgaaatttta 44395863
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 782 ttacccattgcctttgatttgctggtcatgaaacacaggtggaagagtttctttcgttgg 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44396299 ttacccattgcctttgatttgctggtcatgaaacacaggtggaagagtttctttcgttgg 44396240
Query: 842 tcactggttgccctaatgctctttctggtg 871
||||||||||||||||||||||||||||||
Sbjct: 44396239 tcactggttgccctaatgctctttctggtg 44396210
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 556 ggctgtgtgcaagaagtttgggttgcatgtgagtcgaatgatgctagccttcttggttct 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44401943 ggctgtgtgcaagaagtttgggttgcatgtgagtcgaatgatgctagccttcttggttct 44401884
Query: 616 cagcactggcatgttttgctcatcatcag 644
|||||||||||||||||||||||||||||
Sbjct: 44401883 cagcactggcatgttttgctcatcatcag 44401855
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 483 agattctagtcttttactttttacgatgtcttctggcttttgtgagctgtatatgtgaac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44404522 agattctagtcttttactttttacgatgtcttctggcttttgtgagctgtatatgtgaac 44404463
Query: 543 tttacttttacaag 556
||||||||||||||
Sbjct: 44404462 tttacttttacaag 44404449
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,752,016
Number of extensions: 199
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 8
Length of query: 1042
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1021
Effective length of database: 2,808,413,156
Effective search space: 2867389832276
Effective search space used: 2867389832276
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)