Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008876
(1348 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069867.1| ketosamine-3-kinase [Bos taurus]. 552 e-157
Alignment gi|NP_001069650.1| fructosamine-3-kinase [Bos taurus]. 395 e-110
>ref|NP_001069867.1| ketosamine-3-kinase [Bos taurus].
Length = 309
Score = 552 bits (1422), Expect = e-157
Identities = 265/304 (87%), Positives = 281/304 (92%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
ME LLKRELG SVKA GHSGGGCISQGQSYDTD+GRVFVKVN+K EARRMFEGE+ASLT
Sbjct: 1 MEELLKRELGCDSVKATGHSGGGCISQGQSYDTDKGRVFVKVNSKPEARRMFEGEVASLT 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
AIL+TGTV+VPKPIKVLDAPGGGS+LVMEHLDMR L SHAA LG QLADLHLDNKRLGET
Sbjct: 61 AILRTGTVKVPKPIKVLDAPGGGSMLVMEHLDMRHLSSHAAKLGTQLADLHLDNKRLGET 120
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 569
LQKEAG VG+ V RPFV QFGFDVVTCCGYLPQVNDWQ DWVTFYARQRIQPQM+L+
Sbjct: 121 LQKEAGIVGRRDELVARPFVAQFGFDVVTCCGYLPQVNDWQQDWVTFYARQRIQPQMDLV 180
Query: 570 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 749
EQ SGDREARELWAALQLKIPDLF DLDI+PALLHGDLWGGNVAED SGP+IFDPASFYG
Sbjct: 181 EQRSGDREARELWAALQLKIPDLFHDLDIIPALLHGDLWGGNVAEDSSGPIIFDPASFYG 240
Query: 750 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 929
HSEYELAIAGMFGGFS AFYSAYH ++PKAPGFE+R +LYQLFHYLNHWNHFG+GYRGSS
Sbjct: 241 HSEYELAIAGMFGGFSSAFYSAYHSKIPKAPGFEKRLKLYQLFHYLNHWNHFGSGYRGSS 300
Query: 930 LSIM 941
LSIM
Sbjct: 301 LSIM 304
>ref|NP_001069650.1| fructosamine-3-kinase [Bos taurus].
Length = 309
Score = 395 bits (1016), Expect = e-110
Identities = 189/304 (62%), Positives = 235/304 (77%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
ME LL+ EL +++A G G G IS+G++YDTD G VFVK+N + AR+MFEGE+ASL
Sbjct: 1 MEQLLRAELRTATLRAFGSPGVGGISEGRAYDTDAGPVFVKINHRTLARQMFEGEMASLE 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
A+ TG VRVP+PIKV+D PGGG+ VMEHL MR L S A+ LG Q+ADLHL N++LGE
Sbjct: 61 ALRSTGLVRVPRPIKVIDLPGGGAAFVMEHLKMRGLRSQASKLGDQMADLHLYNQKLGEK 120
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 569
L++E VG+ +V +FGF VTCCG++PQVN+WQ DW TF+ R R+Q Q++L+
Sbjct: 121 LREEENRVGQRAEGAGPQYVAKFGFHTVTCCGFIPQVNEWQDDWPTFFTRHRLQAQLDLI 180
Query: 570 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 749
E+ DREA+ELW+ LQ+KIPDLF L+IVPALLHGDLW GNVAED SGP+I+DPASFYG
Sbjct: 181 EKDYADREAQELWSQLQVKIPDLFCGLEIVPALLHGDLWSGNVAEDDSGPIIYDPASFYG 240
Query: 750 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 929
HSE+ELAIA MFGGF +F++AYH +VPKAPGF+RR LYQLF+YLNHWNHFG YR S
Sbjct: 241 HSEFELAIALMFGGFPRSFFTAYHQKVPKAPGFDRRLLLYQLFNYLNHWNHFGRQYRSPS 300
Query: 930 LSIM 941
L M
Sbjct: 301 LGTM 304
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,787,052
Number of extensions: 1918829
Number of successful extensions: 9076
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9047
Number of HSP's successfully gapped: 2
Length of query: 449
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 344
Effective length of database: 14,207,134
Effective search space: 4887254096
Effective search space used: 4887254096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008876
(1348 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108111.1| ketosamine-3-kinase [Canis lupus familiaris]. 554 e-158
Alignment gi|XP_850422.1| PREDICTED: similar to fructosamine 3 kinase [Ca... 332 4e-91
>ref|NP_001108111.1| ketosamine-3-kinase [Canis lupus familiaris].
Length = 309
Score = 554 bits (1428), Expect = e-158
Identities = 264/304 (86%), Positives = 285/304 (93%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
MEALL+RELG V+A GHSGGGCISQGQSYDTDRGRVFVKVN+KAEARRMFEGE+ASLT
Sbjct: 1 MEALLRRELGCDFVRATGHSGGGCISQGQSYDTDRGRVFVKVNSKAEARRMFEGEMASLT 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
AIL+T TVRVPKPIKVLDAPGGGS LVMEH+DMR+L SHAA LG QLADLHL+NKRLGET
Sbjct: 61 AILRTDTVRVPKPIKVLDAPGGGSALVMEHVDMRALDSHAARLGTQLADLHLENKRLGET 120
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 569
L+KEA TVGKGGGQV+R FVD+FGFDVVTCCGYLPQVNDWQ DWVTFYARQRIQPQM+++
Sbjct: 121 LRKEASTVGKGGGQVDRAFVDKFGFDVVTCCGYLPQVNDWQDDWVTFYARQRIQPQMDMV 180
Query: 570 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 749
E+GSGDREARELW+ALQLKIPDLFRDLDIVPALLHGDLW GNVAED SGPVIFDPASFYG
Sbjct: 181 EKGSGDREARELWSALQLKIPDLFRDLDIVPALLHGDLWAGNVAEDSSGPVIFDPASFYG 240
Query: 750 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 929
H+EYELAIAGMFGGF +FYSAYHG +PKAPGFE R QLYQLFHYLNHWNHFG+GYRGSS
Sbjct: 241 HAEYELAIAGMFGGFGRSFYSAYHGAIPKAPGFEARLQLYQLFHYLNHWNHFGSGYRGSS 300
Query: 930 LSIM 941
L+IM
Sbjct: 301 LNIM 304
>ref|XP_850422.1| PREDICTED: similar to fructosamine 3 kinase [Canis familiaris].
Length = 304
Score = 332 bits (852), Expect = 4e-91
Identities = 166/304 (54%), Positives = 210/304 (69%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
ME LL+ EL +++ G G GCIS+G++YDTD G VFVKVN + + R G
Sbjct: 1 MEHLLRAELRTATLRPFGSPGAGCISEGRAYDTDAGPVFVKVNRRTQVRPPPPGPSTGAA 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
G R P L+ PGGG D+ SL A+ LG Q+A+LHL N+RL +
Sbjct: 61 GPRLQGRTRSGTPGSRLELPGGGGAAFSSR-DVLSL--QASRLGEQMAELHLHNQRLKDR 117
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 569
++E T+G+ +V +FGF VTCCG++PQVN+WQ DW TF+AR R+Q Q++L+
Sbjct: 118 CREEESTLGRRAEGAT--YVSRFGFHTVTCCGFIPQVNEWQDDWPTFFARHRLQAQLDLI 175
Query: 570 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 749
E+ DREARELW+ LQ+KIPDLF L+IVPALLHGDLW GNVAED GPVI+DPASFYG
Sbjct: 176 EKDYADREARELWSQLQVKIPDLFCGLEIVPALLHGDLWSGNVAEDDVGPVIYDPASFYG 235
Query: 750 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 929
HSE+ELAIA MFGGF +F++AYH ++PKAPGF++R LYQLF+YLNHWNHFG GYR S
Sbjct: 236 HSEFELAIALMFGGFPRSFFTAYHRKIPKAPGFDKRLLLYQLFNYLNHWNHFGQGYRSPS 295
Query: 930 LSIM 941
L M
Sbjct: 296 LGTM 299
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,331,578
Number of extensions: 1974518
Number of successful extensions: 9818
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9781
Number of HSP's successfully gapped: 2
Length of query: 449
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 343
Effective length of database: 15,340,888
Effective search space: 5261924584
Effective search space used: 5261924584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008876
(1348 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131177.1| PREDICTED: ketosamine-3-kinase-like isoform ... 626 e-179
Alignment gi|XP_003131178.1| PREDICTED: ketosamine-3-kinase-like isoform ... 582 e-166
Alignment gi|XP_003131179.2| PREDICTED: fructosamine-3-kinase-like [Sus s... 399 e-111
>ref|XP_003131177.1| PREDICTED: ketosamine-3-kinase-like isoform 1 [Sus scrofa].
Length = 309
Score = 626 bits (1614), Expect = e-179
Identities = 304/304 (100%), Positives = 304/304 (100%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT
Sbjct: 1 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET
Sbjct: 61 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 120
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 569
LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL
Sbjct: 121 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 180
Query: 570 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 749
EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG
Sbjct: 181 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 240
Query: 750 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 929
HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS
Sbjct: 241 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 300
Query: 930 LSIM 941
LSIM
Sbjct: 301 LSIM 304
>ref|XP_003131178.1| PREDICTED: ketosamine-3-kinase-like isoform 2 [Sus scrofa].
Length = 294
Score = 582 bits (1499), Expect = e-166
Identities = 289/304 (95%), Positives = 289/304 (95%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT
Sbjct: 1 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET
Sbjct: 61 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 120
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 569
LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLP QRIQPQMELL
Sbjct: 121 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLP---------------QRIQPQMELL 165
Query: 570 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 749
EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG
Sbjct: 166 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 225
Query: 750 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 929
HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS
Sbjct: 226 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 285
Query: 930 LSIM 941
LSIM
Sbjct: 286 LSIM 289
>ref|XP_003131179.2| PREDICTED: fructosamine-3-kinase-like [Sus scrofa].
Length = 309
Score = 399 bits (1025), Expect = e-111
Identities = 190/304 (62%), Positives = 233/304 (76%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
ME LL+ EL +++A G G GCIS+G++YDTD G VFVKVN ++ AR+MFEGE+ SL
Sbjct: 1 MEPLLRAELRTTTLRAFGSPGAGCISEGRAYDTDAGPVFVKVNRRSLARQMFEGEMTSLE 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
A+ TG VR P+PIKV+D PGGG+ VMEHL MR L S AA LG Q+A+LHL N++LGE
Sbjct: 61 ALRSTGLVRAPRPIKVIDLPGGGAAFVMEHLKMRGLSSQAAKLGDQMAELHLYNQKLGEK 120
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 569
L+ E VG+ +V +FGF VTCCG++PQVN+WQ DW TF+AR R+Q Q++L+
Sbjct: 121 LRGEESRVGQRAEGAGPQYVTKFGFHTVTCCGFIPQVNEWQDDWPTFFARHRLQAQLDLI 180
Query: 570 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 749
E+ DREARELW+ LQ+KIPDLF L+IVPALLHGDLW GNVAED GPV++DPASFYG
Sbjct: 181 EKDYADREARELWSRLQVKIPDLFCGLEIVPALLHGDLWSGNVAEDDLGPVVYDPASFYG 240
Query: 750 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 929
HSE+ELAIA MFGGF F++AYH +VPKAPGF+RR LYQLF+YLNHWNHFG YR S
Sbjct: 241 HSEFELAIALMFGGFPRPFFTAYHRKVPKAPGFDRRLLLYQLFNYLNHWNHFGRQYRSPS 300
Query: 930 LSIM 941
L M
Sbjct: 301 LGTM 304
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,511,007
Number of extensions: 1251461
Number of successful extensions: 6070
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6051
Number of HSP's successfully gapped: 3
Length of query: 449
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 347
Effective length of database: 8,804,438
Effective search space: 3055139986
Effective search space used: 3055139986
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008876
(1348 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_852085.2| ketosamine-3-kinase [Mus musculus]. 546 e-155
Alignment gi|NP_071297.1| fructosamine-3-kinase isoform a [Mus musculus]. 400 e-112
Alignment gi|NP_001033788.1| fructosamine-3-kinase isoform b [Mus musculu... 179 4e-45
>ref|NP_852085.2| ketosamine-3-kinase [Mus musculus].
Length = 309
Score = 546 bits (1407), Expect = e-155
Identities = 259/304 (85%), Positives = 281/304 (92%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
ME LLKRELG SVKA GHSGGGCISQGQSYDTD+GRVFVKVN+KAEARRMFEGE+ASLT
Sbjct: 1 METLLKRELGCSSVKATGHSGGGCISQGQSYDTDKGRVFVKVNSKAEARRMFEGEMASLT 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
AILKTGTV+VPKPIKV+DAPGGGS+LVMEHLDMR L SHA LG QLADLHL+NKRLGE
Sbjct: 61 AILKTGTVKVPKPIKVVDAPGGGSMLVMEHLDMRYLSSHATKLGTQLADLHLENKRLGER 120
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 569
L KEAGTVGKGG Q ER +VDQFGFDVVTCCGYLPQVNDWQ +WV FYARQRIQPQM+++
Sbjct: 121 LLKEAGTVGKGGEQAERQYVDQFGFDVVTCCGYLPQVNDWQKNWVEFYARQRIQPQMDMV 180
Query: 570 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 749
E+ SGDREA ELW+ALQLKIPDLFRDL+IVPALLHGDLWGGNVAED SGP+IFDPASFYG
Sbjct: 181 EKKSGDREALELWSALQLKIPDLFRDLEIVPALLHGDLWGGNVAEDSSGPIIFDPASFYG 240
Query: 750 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 929
HSEYELAIAGMFGGFS +FYSAYH ++PK PGFE+R QLYQLFHYLNHWNHFG+GYRGSS
Sbjct: 241 HSEYELAIAGMFGGFSSSFYSAYHSKIPKTPGFEKRLQLYQLFHYLNHWNHFGSGYRGSS 300
Query: 930 LSIM 941
L+IM
Sbjct: 301 LNIM 304
>ref|NP_071297.1| fructosamine-3-kinase isoform a [Mus musculus].
Length = 309
Score = 400 bits (1029), Expect = e-112
Identities = 187/304 (61%), Positives = 235/304 (77%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
ME LL+ +L +++A G SGGGCIS+G +Y TD G VFVKVN + +AR+MFEGE+ASL
Sbjct: 1 MEQLLRAQLHTTTLRAFGSSGGGCISEGYAYYTDSGPVFVKVNRRTQARQMFEGEMASLE 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
A+ TG VRVPKP+KV+D PGGG++ VMEHL M+SL S A+ LG Q+ADLHL N++L E
Sbjct: 61 ALRNTGLVRVPKPMKVIDLPGGGAVFVMEHLKMKSLSSQASKLGEQMADLHLYNQKLREK 120
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 569
+ TVG G E V +FGF VTCCG++PQVN+WQ DW TF+ R R+Q Q++L+
Sbjct: 121 SKTRQNTVGCGAEGAEPQGVTKFGFHTVTCCGFIPQVNEWQEDWPTFFTRHRLQAQLDLI 180
Query: 570 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 749
E+ DRE +ELW+ LQ+KIPDLF ++IVPALLHGDLW GNVAED GPVI+DPASFYG
Sbjct: 181 EKDYADRETQELWSRLQVKIPDLFAGIEIVPALLHGDLWSGNVAEDDQGPVIYDPASFYG 240
Query: 750 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 929
HSE+ELAIA MFGGF +F++AYH ++PKAPGF++R LYQLF+YLNHWNHFG YR S
Sbjct: 241 HSEFELAIASMFGGFPRSFFTAYHRKIPKAPGFDKRLLLYQLFNYLNHWNHFGREYRSPS 300
Query: 930 LSIM 941
L +M
Sbjct: 301 LGVM 304
>ref|NP_001033788.1| fructosamine-3-kinase isoform b [Mus musculus].
Length = 208
Score = 179 bits (454), Expect = 4e-45
Identities = 89/158 (56%), Positives = 115/158 (72%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
ME LL+ +L +++A G SGGGCIS+G +Y TD G VFVKVN + +AR+MFEGE+ASL
Sbjct: 1 MEQLLRAQLHTTTLRAFGSSGGGCISEGYAYYTDSGPVFVKVNRRTQARQMFEGEMASLE 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
A+ TG VRVPKP+KV+D PGGG++ VMEHL M+SL S A+ LG Q+ADLHL N++L E
Sbjct: 61 ALRNTGLVRVPKPMKVIDLPGGGAVFVMEHLKMKSLSSQASKLGEQMADLHLYNQKLREK 120
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVN 503
+ TVG G E V +FGF VTCCG++PQV+
Sbjct: 121 SKTRQNTVGCGAEGAEPQGVTKFGFHTVTCCGFIPQVS 158
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,941,431
Number of extensions: 1548550
Number of successful extensions: 6724
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6704
Number of HSP's successfully gapped: 3
Length of query: 449
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 344
Effective length of database: 12,463,779
Effective search space: 4287539976
Effective search space used: 4287539976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008876
(1348 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078895.2| ketosamine-3-kinase [Homo sapiens]. 544 e-155
Alignment gi|NP_071441.1| fructosamine-3-kinase [Homo sapiens]. 410 e-114
>ref|NP_078895.2| ketosamine-3-kinase [Homo sapiens].
Length = 309
Score = 544 bits (1402), Expect = e-155
Identities = 257/304 (84%), Positives = 282/304 (92%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
ME LL+RELG SV+A GHSGGGCISQG+SYDTD+GRVFVKVN KAEARRMFEGE+ASLT
Sbjct: 1 MEELLRRELGCSSVRATGHSGGGCISQGRSYDTDQGRVFVKVNPKAEARRMFEGEMASLT 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
AILKT TV+VPKPIKVLDAPGGGS+LVMEH+DMR L SHAA LG QLADLHLDNK+LGE
Sbjct: 61 AILKTNTVKVPKPIKVLDAPGGGSVLVMEHMDMRHLSSHAAKLGAQLADLHLDNKKLGEM 120
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 569
KEAGTVG+GGGQ ERPFV +FGFDVVTCCGYLPQVNDWQ DWV FYARQRIQPQM+++
Sbjct: 121 RLKEAGTVGRGGGQEERPFVARFGFDVVTCCGYLPQVNDWQEDWVVFYARQRIQPQMDMV 180
Query: 570 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 749
E+ SGDREA +LW+ALQLKIPDLFRDL+I+PALLHGDLWGGNVAED SGPVIFDPASFYG
Sbjct: 181 EKESGDREALQLWSALQLKIPDLFRDLEIIPALLHGDLWGGNVAEDSSGPVIFDPASFYG 240
Query: 750 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 929
HSEYELAIAGMFGGFS +FYSAYHG++PKAPGFE+R QLYQLFHYLNHWNHFG+GYRGSS
Sbjct: 241 HSEYELAIAGMFGGFSSSFYSAYHGKIPKAPGFEKRLQLYQLFHYLNHWNHFGSGYRGSS 300
Query: 930 LSIM 941
L+IM
Sbjct: 301 LNIM 304
>ref|NP_071441.1| fructosamine-3-kinase [Homo sapiens].
Length = 309
Score = 410 bits (1054), Expect = e-114
Identities = 192/304 (63%), Positives = 241/304 (79%)
Frame = +3
Query: 30 MEALLKRELGYRSVKAAGHSGGGCISQGQSYDTDRGRVFVKVNTKAEARRMFEGELASLT 209
ME LL+ EL +++A G G GCIS+G++YDTD G VFVKVN + +AR+MFEGE+ASL
Sbjct: 1 MEQLLRAELRTATLRAFGGPGAGCISEGRAYDTDAGPVFVKVNRRTQARQMFEGEVASLE 60
Query: 210 AILKTGTVRVPKPIKVLDAPGGGSLLVMEHLDMRSLGSHAATLGVQLADLHLDNKRLGET 389
A+ TG VRVP+P+KV+D PGGG+ VMEHL M+SL S A+ LG Q+ADLHL N++L E
Sbjct: 61 ALRSTGLVRVPRPMKVIDLPGGGAAFVMEHLKMKSLSSQASKLGEQMADLHLYNQKLREK 120
Query: 390 LQKEAGTVGKGGGQVERPFVDQFGFDVVTCCGYLPQVNDWQSDWVTFYARQRIQPQMELL 569
L++E TVG+ G E +VD+FGF VTCCG++PQVN+WQ DW TF+AR R+Q Q++L+
Sbjct: 121 LKEEENTVGRRGEGAEPQYVDKFGFHTVTCCGFIPQVNEWQDDWPTFFARHRLQAQLDLI 180
Query: 570 EQGSGDREARELWAALQLKIPDLFRDLDIVPALLHGDLWGGNVAEDPSGPVIFDPASFYG 749
E+ DREARELW+ LQ+KIPDLF L+IVPALLHGDLW GNVAED GP+I+DPASFYG
Sbjct: 181 EKDYADREARELWSRLQVKIPDLFCGLEIVPALLHGDLWSGNVAEDDVGPIIYDPASFYG 240
Query: 750 HSEYELAIAGMFGGFSGAFYSAYHGRVPKAPGFERRHQLYQLFHYLNHWNHFGAGYRGSS 929
HSE+ELAIA MFGGF +F++AYH ++PKAPGF++R LYQLF+YLNHWNHFG YR S
Sbjct: 241 HSEFELAIALMFGGFPRSFFTAYHRKIPKAPGFDQRLLLYQLFNYLNHWNHFGREYRSPS 300
Query: 930 LSIM 941
L M
Sbjct: 301 LGTM 304
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,680,740
Number of extensions: 1906336
Number of successful extensions: 8922
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8890
Number of HSP's successfully gapped: 2
Length of query: 449
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 343
Effective length of database: 14,802,980
Effective search space: 5077422140
Effective search space used: 5077422140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008876
(1348 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1402 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1402 bits (707), Expect = 0.0
Identities = 727/736 (98%)
Strand = Plus / Plus
Query: 613 ccctgcagttgaagatcccggacctgttccgagacctggacatcgtcccggccctgctcc 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268247 ccctgcagttgaagatcccggacctgttccgagacctggacatcgtcccggccctgctcc 268306
Query: 673 acggagacctctnnnnnnnaaacgtggcggaggacccctccgggccggtcatttttgacc 732
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 268307 acggagacctctgggggggaaacgtggcagaggacccctccgggccggtcatttttgacc 268366
Query: 733 ctgcctccttctacggtcactcggagtacgagctggccatcgccggcatgttcgggggct 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268367 ctgcctccttctacggtcactcggagtacgagctggccatcgccggcatgttcgggggct 268426
Query: 793 tcagcggcgccttctactccgcctaccacggcagggtccccaaggcccccggcttcgaga 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268427 tcagcggcgccttctactccgcctaccacggcagggtccccaaggcccccggcttcgaga 268486
Query: 853 ggcgccatcagctctatcagctgttccactacctgaaccactggaaccactttggggcgg 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268487 ggcgccatcagctctatcagctgttccactacctgaaccactggaaccactttggggcgg 268546
Query: 913 ggtacaggggctcctccctcagcatcatgcggaacctcatcagatgagcccgcgctctcg 972
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 268547 ggtacaggggctcctccctcagcatcatgcggaacctcgtcagatgagcccgcgctctcg 268606
Query: 973 ggaggggccgggttccgtcaccagatccccgccccgacacccctccttcctccttggcct 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268607 ggaggggccgggttccgtcaccagatccccgccccgacacccctccttcctccttggcct 268666
Query: 1033 cccctgggcatcctgcttcacaccctggagcagctcagaccagctttccaggccctgtca 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268667 cccctgggcatcctgcttcacaccctggagcagctcagaccagctttccaggccctgtca 268726
Query: 1093 gcacctcgggggaaaaaaggcttttttgccctgcagttagactttaaactgctcgataaa 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268727 gcacctcgggggaaaaaaggcttttttgccctgcagttagactttaaactgctcgataaa 268786
Query: 1153 aaagataaaactgccctagaaactggatgtgagctggggaccctggggggctgcatccag 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268787 aaagataaaactgccctagaaactggatgtgagctggggaccctggggggctgcatccag 268846
Query: 1213 cctgcagctgcccccgagggaggtagcccgtgggcccaggtcaccttcccttctccgtca 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268847 cctgcagctgcccccgagggaggtagcccgtgggcccaggtcaccttcccttctccgtca 268906
Query: 1273 cctctgggcctgccgtgggctgggcaggtgcgggcaggcgggcagtgagcacaccgctgg 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268907 cctctgggcctgccgtgggctgggcaggtgcgggcaggcgggcagtgagcacaccgctgg 268966
Query: 1333 cctcagtgtccctggc 1348
||||||||||||||||
Sbjct: 268967 cctcagtgtccctggc 268982
Score = 325 bits (164), Expect = 4e-86
Identities = 167/168 (99%)
Strand = Plus / Plus
Query: 4 gggtctgcggaccaggcgcggggaacatggaggcgctgctcaagcgggagctgggctacc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261622 gggtctgcggaccaggcgcggggaacatggaggcgctgctcaagcgggagctgggctacc 261681
Query: 64 gctccgtcaaggccgccggtcactcggggggcggctgcattagccaaggccagagctacg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261682 gctccgtcaaggccgccggtcactcggggggcggctgcattagccaaggccagagctacg 261741
Query: 124 acacggacagaggacgagtgtttgtaaaagtgaacaccaaggcggagg 171
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261742 acacggacagaggacgagtgtttgtgaaagtgaacaccaaggcggagg 261789
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 169 aggccagaaggatgtttgaaggcgagctggcaagtttaaccgccatcctaaagacgggca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265289 aggccagaaggatgtttgaaggcgagctggcaagtttaaccgccatcctaaagacgggca 265348
Query: 229 cagtgagggtgcccaagcccatcaaagtcctggacgcccccgggggcggcagcctgctgg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265349 cagtgagggtgcccaagcccatcaaagtcctggacgcccccgggggcggcagcctgctgg 265408
Query: 289 tgatggagcatctggacatgcgctccctcggcag 322
||||||||||||||||||||||||||||||||||
Sbjct: 265409 tgatggagcatctggacatgcgctccctcggcag 265442
Score = 240 bits (121), Expect = 2e-60
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 496 aggtgaatgactggcagagtgactgggtcacattctatgcccggcagcgcattcagcccc 555
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267921 aggtgaacgactggcagagtgactgggtcacattctatgcccggcagcgcattcagcccc 267980
Query: 556 agatggagctgttggagcaggggtctggggacagggaggcccgcgagctctgggccgccc 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267981 agatggagctgttggagcaggggtctggggacagggaggcccgcgagctctgggccgccc 268040
Query: 616 tgcag 620
|||||
Sbjct: 268041 tgcag 268045
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 320 cagtcatgccgccacgcttggagtccagctggcagacctacacctggacaacaagaggct 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265750 cagtcatgccgccacgcttggagtccagctggcagacctacacctggacaacaagaggct 265809
Query: 380 tggagagactctgcagaaggaggccggcaccgtggg 415
||||||||||||||||||||||||||||||||||||
Sbjct: 265810 tggagagactctgcagaaggaggccggcaccgtggg 265845
Score = 174 bits (88), Expect = 8e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 414 gggaaaggaggcgggcaggtggagcggccctttgtcgaccagtttgggtttgacgtggtg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267306 gggaaaggaggcgggcaggtggagcggccctttgtcgaccagtttgggtttgacgtggtg 267365
Query: 474 acctgctgcgggtacctcccccaggtga 501
||||||||||||||||||||||||||||
Sbjct: 267366 acctgctgcgggtacctcccccaggtga 267393
Score = 91.7 bits (46), Expect = 9e-16
Identities = 222/283 (78%)
Strand = Plus / Plus
Query: 622 tgaagatcccggacctgttccgagacctggacatcgtcccggccctgctccacggagacc 681
||||||||||||| ||||| | | ||| || || ||||| ||||| || ||||| ||||
Sbjct: 286534 tgaagatcccggatctgttttgtggcctagagattgtccccgcccttcttcacggggacc 286593
Query: 682 tctnnnnnnnaaacgtggcggaggacccctccgggccggtcatttttgaccctgcctcct 741
||| |||||||||||||||| || ||||| ||| | | |||||| |||||||
Sbjct: 286594 tctggtccggaaacgtggcggaggacgacttggggcccgtcgtgtatgacccggcctcct 286653
Query: 742 tctacggtcactcggagtacgagctggccatcgccggcatgttcgggggcttcagcggcg 801
||||||| ||||| |||| ||| |||||||| ||| ||||||||||| || | |
Sbjct: 286654 tctacggccactctgagttcgaactggccattgccttgatgttcgggggttttcccaggc 286713
Query: 802 ccttctactccgcctaccacggcagggtccccaaggcccccggcttcgagaggcgccatc 861
|||||| | ||||||||||| | | |||||||||||| ||||| || || ||||| | |
Sbjct: 286714 ccttcttcaccgcctaccaccggaaggtccccaaggctcccgggtttgacaggcggctgc 286773
Query: 862 agctctatcagctgttccactacctgaaccactggaaccactt 904
|||||| ||||| || ||||||| |||||||||||||||||
Sbjct: 286774 tgctctaccagctctttaactacctaaaccactggaaccactt 286816
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,289,850
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 8
Length of query: 1348
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1327
Effective length of database: 2,808,413,156
Effective search space: 3726764258012
Effective search space used: 3726764258012
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)