Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008877
(1043 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014857.1| claudin-10 isoform a [Bos taurus]. 437 e-123
Alignment gi|NP_001099079.1| claudin-10 isoform b [Bos taurus]. 331 7e-91
Alignment gi|NP_001039651.1| claudin-15 [Bos taurus]. 184 1e-46
Alignment gi|NP_001094554.1| claudin-19 [Bos taurus]. 153 3e-37
Alignment gi|NP_001035609.1| claudin-7 [Bos taurus]. 148 9e-36
Alignment gi|NP_001001854.1| claudin-1 [Bos taurus]. 142 4e-34
Alignment gi|NP_001014413.1| claudin-4 [Bos taurus]. 141 8e-34
Alignment gi|NP_991370.1| claudin-3 [Bos taurus]. 135 6e-32
Alignment gi|NP_001068984.1| claudin-18 [Bos taurus]. 130 2e-30
Alignment gi|NP_001069928.1| claudin-5 [Bos taurus]. 127 2e-29
>ref|NP_001014857.1| claudin-10 isoform a [Bos taurus].
Length = 231
Score = 437 bits (1124), Expect = e-123
Identities = 215/226 (95%), Positives = 218/226 (96%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWK CVTDSTGVSNCKDF
Sbjct: 7 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKTCVTDSTGVSNCKDF 66
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
PSMLALDGYIQACRGLMIAAVSLGFFGSIFAL GMKCTKVGGSDKAKAK+ACLAGIVFIL
Sbjct: 67 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALIGMKCTKVGGSDKAKAKIACLAGIVFIL 126
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP +VEQKYELGAALFIGWAGASLC+IGGVIFCFSISDN
Sbjct: 127 SGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCLIGGVIFCFSISDN 186
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
NK PRMGYTYNGATSVMSSRTKYH G GDLKT NPSKQFDKNAYV
Sbjct: 187 NKAPRMGYTYNGATSVMSSRTKYH-GREGDLKTPNPSKQFDKNAYV 231
>ref|NP_001099079.1| claudin-10 isoform b [Bos taurus].
Length = 229
Score = 331 bits (848), Expect = 7e-91
Identities = 164/226 (72%), Positives = 186/226 (82%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
+I A + + G+ + + ++ WKV+T +VIT + LW C ++ G +C+
Sbjct: 5 QISALVFGVGGFGALVAATASNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPH 64
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
++ ++GYIQACRGLMIAAVSLGFFGSIFAL GMKCTKVGGSDKAKAK+ACLAGIVFIL
Sbjct: 65 FTIFKVEGYIQACRGLMIAAVSLGFFGSIFALIGMKCTKVGGSDKAKAKIACLAGIVFIL 124
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP +VEQKYELGAALFIGWAGASLC+IGGVIFCFSISDN
Sbjct: 125 SGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCLIGGVIFCFSISDN 184
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
NK PRMGYTYNGATSVMSSRTKYH G GDLKT NPSKQFDKNAYV
Sbjct: 185 NKAPRMGYTYNGATSVMSSRTKYH-GREGDLKTPNPSKQFDKNAYV 229
>ref|NP_001039651.1| claudin-15 [Bos taurus].
Length = 235
Score = 184 bits (467), Expect = 1e-46
Identities = 96/230 (41%), Positives = 130/230 (56%), Gaps = 4/230 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
EI F ++ G +++ TL W+VST+ G VITT T + NLW +C TDS GV NC +F
Sbjct: 6 EIFGFFLTAVGLLMLGVTLAHSSWRVSTVHGNVITTNTIFENLWYSCATDSMGVHNCWEF 65
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKMACLAGIVFI 474
PSMLAL GYIQACR LMI A+ LGF G + G++CT +GG + K K+A AG + I
Sbjct: 66 PSMLALSGYIQACRALMITAILLGFLGLFLGMVGLRCTNIGGLELSRKTKLAATAGALHI 125
Query: 475 LSGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIF---CFS 645
L+G+C M S YA IT +FF+P Y KYELG AL++GW+ L I+GG+ C
Sbjct: 126 LAGICGMVAVSWYAFNITRDFFNPLYAGTKYELGPALYLGWSACLLAILGGICLFSNCCC 185
Query: 646 ISDNNKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
D + + Y +S D + + ++ KNAYV
Sbjct: 186 SRDRDPATGVQLPYKAPVIPAASLAARLPAAASDEEGDSSFGKYGKNAYV 235
>ref|NP_001094554.1| claudin-19 [Bos taurus].
Length = 211
Score = 153 bits (386), Expect = 3e-37
Identities = 74/177 (41%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTAT-YWANLWKACVTDSTGVSNCKD 294
+++ + +++ GWV + ++ WK S+ G I TA + LW +C + STG CK
Sbjct: 7 QLLGYFLAMGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKL 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDK-AKAKMACLAGIVF 471
+ S+LAL+G+IQ+ R LM+ AV LGF + ++ GMKCT+VG S+ AK ++A G +F
Sbjct: 67 YDSLLALEGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGALF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFC 639
+L+GLC++T S YA +T EFF+P V +YE G ALF+GWA A L ++GG C
Sbjct: 127 LLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWAAAGLALLGGSFLC 183
>ref|NP_001035609.1| claudin-7 [Bos taurus].
Length = 211
Score = 148 bits (373), Expect = 9e-36
Identities = 72/186 (38%), Positives = 115/186 (61%), Gaps = 3/186 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDG-TVITTATYWANLWKACVTDSTGVSNCKD 294
+++ F +++ GWV + + W++S+ G +IT + LW CVT STG+ +CK
Sbjct: 7 QLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKM 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKMACLAGIVF 471
+ S+L+L +QA R LM+ ++ LGF + A GMKCT GG DK KA++A GI+F
Sbjct: 67 YDSVLSLPAALQATRALMVVSLVLGFLATFVATMGMKCTNCGGDDKVKKARIAMTGGIIF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFCFSI 648
IL+GL ++ CS Y ++I ++F++P + KYE G A+FIGWAG++L ++GG + S
Sbjct: 127 ILAGLAALIACSWYGHQIVSDFYNPLVPMNVKYEFGPAIFIGWAGSALVLLGGALLSCSC 186
Query: 649 SDNNKK 666
+ K
Sbjct: 187 PGSESK 192
>ref|NP_001001854.1| claudin-1 [Bos taurus].
Length = 211
Score = 142 bits (359), Expect = 4e-34
Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 5/181 (2%)
Frame = +1
Query: 118 EIIAFMVSISGWV--LVSSTLPTDYWKV-STIDGTVITTATYWANLWKACVTDSTGVSNC 288
+++ F+++ GW+ +VS+ LP WKV S ++T + LW +CV+ STG C
Sbjct: 7 QLLGFILAFLGWIGSIVSTALPQ--WKVYSYASDNIVTAQAIYEGLWMSCVSQSTGQIQC 64
Query: 289 KDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKMACLAGI 465
K F S+L L+ +QA R LM+ + LG A GMKC K D+A K +MA G+
Sbjct: 65 KVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATVGMKCMKCMEDDEAQKMRMAVFGGV 124
Query: 466 VFILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFCF 642
+F++SGL + + Y N+I EF+DP V +YE G ALFIGWA ASLC++GG + C
Sbjct: 125 IFLISGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFIGWAAASLCLLGGALLCC 184
Query: 643 S 645
S
Sbjct: 185 S 185
>ref|NP_001014413.1| claudin-4 [Bos taurus].
Length = 209
Score = 141 bits (356), Expect = 8e-34
Identities = 74/203 (36%), Positives = 118/203 (58%), Gaps = 4/203 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWV--LVSSTLPTDYWKVSTIDGT-VITTATYWANLWKACVTDSTGVSNC 288
+++ +++ GW+ ++S LP W+V+ G+ ++T+ T W LW CV STG C
Sbjct: 7 QVMGIALAVLGWLGAILSCALPM--WRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQC 64
Query: 289 KDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIV 468
K + S+LAL +QA R L++ + L FG + ++ G KCT + +KAK+ +AG+V
Sbjct: 65 KVYDSLLALPQDLQAARALIVICIILAVFGVLLSVVGGKCTNCVDDESSKAKIMIVAGVV 124
Query: 469 FILSGLCSMTGCSLYANKITTEFFDPHYVE-QKYELGAALFIGWAGASLCIIGGVIFCFS 645
F+L+GL M S AN + +F++P QK E+GA+L++GWA A L I+GG + CF+
Sbjct: 125 FLLAGLLVMVPVSWTANNVIRDFYNPLVASGQKREMGASLYVGWAAAGLLILGGALLCFN 184
Query: 646 ISDNNKKPRMGYTYNGATSVMSS 714
N KP Y+ A S +S
Sbjct: 185 CPPRNDKP-YSAKYSAARSAPAS 206
>ref|NP_991370.1| claudin-3 [Bos taurus].
Length = 219
Score = 135 bits (340), Expect = 6e-32
Identities = 76/208 (36%), Positives = 113/208 (54%), Gaps = 5/208 (2%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATY-WANLWKACVTDSTGVSNCKD 294
EI +++ GW+ W+V+ G+ I TA W LW CV STG CK
Sbjct: 6 EIAGTSLAVLGWLCTIVCCALPMWRVTAFIGSSIITAQITWEGLWMNCVVQSTGQMQCKV 65
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFI 474
+ S+LAL +QA R L++ A+ L FG + AL G +CT D AKAK+ +AG++F+
Sbjct: 66 YDSLLALPQDLQAARALIVIAILLAVFGLLVALVGAQCTNCVQDDTAKAKITIVAGVLFL 125
Query: 475 LSGLCSMTGCSLYANKITTEFFDPHYVE-QKYELGAALFIGWAGASLCIIGGVIFCFSIS 651
L+ L ++ S AN I +F++P E QK E+GAAL++GWA ++L ++GG + C S
Sbjct: 126 LAALLTLVPVSWSANTIIRDFYNPLVPEAQKREMGAALYVGWAASALQLLGGALLCCSCP 185
Query: 652 DNNKKPRMGYTYNGATS---VMSSRTKY 726
+ R Y+ S V S+ T Y
Sbjct: 186 PRDNYARTKIVYSAPRSTGPVTSTGTAY 213
>ref|NP_001068984.1| claudin-18 [Bos taurus].
Length = 261
Score = 130 bits (327), Expect = 2e-30
Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 32/253 (12%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
+++ F++SI G D W + +T + LW++CV S+G + C+ +
Sbjct: 7 QVVGFLLSILGLAGCIVATEMDMWSTQDLYDNPVTAVFQYEGLWRSCVQQSSGFTECRPY 66
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGG-SDKAKAKMACLAGIVFI 474
++L L +QA R LMI + L G + A+F +KC ++G D AKAKM +GI+FI
Sbjct: 67 LTILGLPAMLQAVRALMIVGIVLSVIGLLVAIFALKCIRMGNMDDSAKAKMTLTSGIMFI 126
Query: 475 LSGLCSMTGCSLYANKITTEFFDP------------HYVEQKYELGAALFIGWAGASLCI 618
++GLC++ G S++AN + T F+ V+ +Y GAALF+GW L +
Sbjct: 127 IAGLCAIAGVSVFANMLVTNFWMSTASMFTSMGGMVQTVQTRYTFGAALFVGWVAGGLTL 186
Query: 619 IGGVIFCF-------------SISDNNKKPRMGYTYNG--ATSVMSSRTK----YHGGGG 741
IGGV+ C ++S + + Y G A+S S T+ Y GG
Sbjct: 187 IGGVLMCIACRGLAPEETNYKAVSYHASGHNVAYRPGGFKASSGFESNTRNKKIYDGGAR 246
Query: 742 GDLKTTNPSKQFD 780
+ + +P ++D
Sbjct: 247 TEDEGQSPPSKYD 259
>ref|NP_001069928.1| claudin-5 [Bos taurus].
Length = 218
Score = 127 bits (318), Expect = 2e-29
Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 2/176 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVST-IDGTVITTATYWANLWKACVTDSTGVSNCKD 294
EI+ ++ + GWV + W+V+ +D ++T T W LW +CV STG CK
Sbjct: 7 EILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKV 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFI 474
+ S+LAL +QA R L + AV L L G +CT AKA++A G ++
Sbjct: 67 YDSVLALSPEVQAARALTVGAVLLALVALFVTLAGAQCTTCVAPGPAKARVALTGGALYA 126
Query: 475 LSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFC 639
L GL ++ +AN + EF+DP + QKYELGAAL+IGWA ++L + GG + C
Sbjct: 127 LCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASALLMCGGGLVC 182
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,385,536
Number of extensions: 984756
Number of successful extensions: 2766
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 2713
Number of HSP's successfully gapped: 30
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008877
(1043 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534163.1| PREDICTED: similar to claudin 10 isoform b isof... 436 e-122
Alignment gi|XP_858900.1| PREDICTED: similar to claudin 10 isoform b isof... 346 2e-95
Alignment gi|XP_858821.1| PREDICTED: similar to claudin 10 isoform a isof... 330 1e-90
Alignment gi|XP_848612.1| PREDICTED: similar to claudin 19 (predicted) [C... 155 8e-38
Alignment gi|XP_546584.2| PREDICTED: similar to Claudin-7 (CLDN-7) [Canis... 142 4e-34
Alignment gi|XP_850248.1| PREDICTED: similar to Claudin-1 [Canis familiar... 139 4e-33
Alignment gi|XP_546920.2| PREDICTED: similar to claudin 4 [Canis familiar... 134 1e-31
Alignment gi|XP_850281.1| PREDICTED: similar to Claudin-15 [Canis familia... 132 4e-31
Alignment gi|NP_001003088.1| claudin-3 [Canis lupus familiaris]. 132 7e-31
Alignment gi|XP_852057.1| PREDICTED: similar to claudin 18 isoform 2 isof... 129 5e-30
>ref|XP_534163.1| PREDICTED: similar to claudin 10 isoform b isoform 1 [Canis
familiaris].
Length = 231
Score = 436 bits (1122), Expect = e-122
Identities = 215/226 (95%), Positives = 217/226 (96%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWK CVTDSTGVSNCKDF
Sbjct: 7 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKTCVTDSTGVSNCKDF 66
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAK+ACLAGIVFIL
Sbjct: 67 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFIL 126
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP YVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN
Sbjct: 127 SGLCSMTGCSLYANKITTEFFDPLYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 186
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
NK PRMGY YNGATSV+SSRTKY G GD KTTNPSKQFDKNAYV
Sbjct: 187 NKPPRMGYAYNGATSVLSSRTKY-PGAEGDFKTTNPSKQFDKNAYV 231
>ref|XP_858900.1| PREDICTED: similar to claudin 10 isoform b isoform 3 [Canis
familiaris].
Length = 195
Score = 346 bits (888), Expect = 2e-95
Identities = 180/226 (79%), Positives = 182/226 (80%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWK CVTDSTGVSNCKDF
Sbjct: 7 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKTCVTDSTGVSNCKDF 66
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAK+ACLAGIVFIL
Sbjct: 67 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFIL 126
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP YVEQK
Sbjct: 127 SGLCSMTGCSLYANKITTEFFDPLYVEQK------------------------------- 155
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
MGY YNGATSV+SSRTKY G GD KTTNPSKQFDKNAYV
Sbjct: 156 -----MGYAYNGATSVLSSRTKY-PGAEGDFKTTNPSKQFDKNAYV 195
>ref|XP_858821.1| PREDICTED: similar to claudin 10 isoform a isoform 2 [Canis
familiaris].
Length = 229
Score = 330 bits (846), Expect = 1e-90
Identities = 164/226 (72%), Positives = 185/226 (81%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
+I A + + G+ + + ++ WKV+T +VIT + LW C ++ G +C+
Sbjct: 5 QISALVFGVGGFGALVAATASNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPH 64
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
++ ++GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAK+ACLAGIVFIL
Sbjct: 65 FTIFKVEGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFIL 124
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP YVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN
Sbjct: 125 SGLCSMTGCSLYANKITTEFFDPLYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 184
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
NK PRMGY YNGATSV+SSRTKY G GD KTTNPSKQFDKNAYV
Sbjct: 185 NKPPRMGYAYNGATSVLSSRTKY-PGAEGDFKTTNPSKQFDKNAYV 229
>ref|XP_848612.1| PREDICTED: similar to claudin 19 (predicted) [Canis familiaris].
Length = 302
Score = 155 bits (391), Expect = 8e-38
Identities = 74/177 (41%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTAT-YWANLWKACVTDSTGVSNCKD 294
+++ + +++ GWV + ++ WK S+ G I TA + LW +C + STG CK
Sbjct: 98 QLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKL 157
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKMACLAGIVF 471
+ S+LAL+G+IQ+ R LM+ AV LGF + ++ GMKCT+VG S+ AK ++A G++F
Sbjct: 158 YDSLLALEGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKGRIAISGGVLF 217
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFC 639
+L+GLC++T S YA +T EFF+P V +YE G+ALF+GWA A L ++GG C
Sbjct: 218 LLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGSALFVGWASAGLAMLGGSFLC 274
>ref|XP_546584.2| PREDICTED: similar to Claudin-7 (CLDN-7) [Canis familiaris].
Length = 217
Score = 142 bits (359), Expect = 4e-34
Identities = 73/192 (38%), Positives = 113/192 (58%), Gaps = 9/192 (4%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDG-TVITTATYWANLWKACVTDSTGVSNCKD 294
+++ F +++ GW + ++ W++S+ G +IT + LW CVT STG+ +CK
Sbjct: 7 QLLGFALALVGWAGLVASTAIPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTGMMSCKM 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKMACLAGIVF 471
+ S+LAL +QA R LM+ ++ LGF A GMKCT GG DK KA++A GI+F
Sbjct: 67 YDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTNCGGDDKVKKARIAMTGGIIF 126
Query: 472 ILS------GLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGV 630
I+ GL ++ CS Y ++I T+F++P + KYE G A+FIGWAG++L I+GG
Sbjct: 127 IVGGEQQAPGLAALVACSWYGHQIVTDFYNPLVPMNIKYEFGPAIFIGWAGSALVILGGA 186
Query: 631 IFCFSISDNNKK 666
+ S + K
Sbjct: 187 LLSCSCPGSESK 198
>ref|XP_850248.1| PREDICTED: similar to Claudin-1 [Canis familiaris].
Length = 211
Score = 139 bits (350), Expect = 4e-33
Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 5/181 (2%)
Frame = +1
Query: 118 EIIAFMVSISGWV--LVSSTLPTDYWKVSTIDG-TVITTATYWANLWKACVTDSTGVSNC 288
+++ F+++ GWV +VS+ LP WK+ + G ++T + LW +CV+ STG C
Sbjct: 7 QLLGFLLAFLGWVGSIVSTALPQ--WKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQC 64
Query: 289 KDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKMACLAGI 465
K F S+L L+ +QA R LM+ + LG A GMKC K D+ K +MA + G+
Sbjct: 65 KVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATIGMKCMKCMEDDEVQKMRMAVIGGV 124
Query: 466 VFILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFCF 642
+F+++GL + + Y N+I +F+DP V +YE G ALF GWA ASLC++GG + C
Sbjct: 125 IFLIAGLAVLVATAWYGNRIVQDFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLCC 184
Query: 643 S 645
S
Sbjct: 185 S 185
>ref|XP_546920.2| PREDICTED: similar to claudin 4 [Canis familiaris].
Length = 210
Score = 134 bits (338), Expect = 1e-31
Identities = 69/188 (36%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Frame = +1
Query: 118 EIIAFMVSISGWV--LVSSTLPTDYWKVSTIDGT-VITTATYWANLWKACVTDSTGVSNC 288
+++ +++ GW+ ++S LP W+V+ G+ ++T+ T W LW CV STG C
Sbjct: 7 QVMGIALAVLGWLGAILSCALPM--WRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQC 64
Query: 289 KDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIV 468
K + S+LAL +QA R LM+ ++ L G + ++ G KCT + AKAK +AG+V
Sbjct: 65 KVYDSLLALPQDLQAARALMVVSIILAALGVLLSVVGGKCTNCVEDESAKAKTMIVAGVV 124
Query: 469 FILSGLCSMTGCSLYANKITTEFFDPHYVE-QKYELGAALFIGWAGASLCIIGGVIFCFS 645
F+L+GL M S AN I +F++P V QK E+GA+L++GWA + L ++GG + C +
Sbjct: 125 FLLAGLLVMVPASWTANNIIRDFYNPLVVSGQKREMGASLYVGWAASGLLLLGGALLCCN 184
Query: 646 ISDNNKKP 669
KP
Sbjct: 185 CPPRADKP 192
>ref|XP_850281.1| PREDICTED: similar to Claudin-15 [Canis familiaris].
Length = 179
Score = 132 bits (333), Expect = 4e-31
Identities = 60/123 (48%), Positives = 85/123 (69%), Gaps = 1/123 (0%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
E F ++ G +++ TLP YW+VST+ G+VITT T + NLW +C TDS GV +C++F
Sbjct: 6 ETFGFFMAALGLLMLGVTLPNSYWRVSTVHGSVITTNTIFENLWFSCATDSLGVYSCREF 65
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKMACLAGIVFI 474
PS+LAL GY+QACR LMI A+ LGF G + G++C +GG + KAK+A AG++ I
Sbjct: 66 PSLLALSGYLQACRALMITAIFLGFLGLFLGMVGLRCINIGGMELSRKAKLAATAGVLHI 125
Query: 475 LSG 483
L+G
Sbjct: 126 LAG 128
>ref|NP_001003088.1| claudin-3 [Canis lupus familiaris].
Length = 218
Score = 132 bits (331), Expect = 7e-31
Identities = 69/185 (37%), Positives = 105/185 (56%), Gaps = 2/185 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATY-WANLWKACVTDSTGVSNCKD 294
EI +++ GW+ W+V+ G+ I TA W LW CV STG CK
Sbjct: 6 EIAGTSLAVLGWLSTIVCCALPMWRVTAFIGSSIITAQITWEGLWMNCVVQSTGQMQCKV 65
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFI 474
+ S+LAL +QA R L++ ++ L FG + AL G +CT D AKAK+ +AG++F+
Sbjct: 66 YDSLLALPQDLQAARALIVVSILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAGVLFL 125
Query: 475 LSGLCSMTGCSLYANKITTEFFDPHYVE-QKYELGAALFIGWAGASLCIIGGVIFCFSIS 651
L+ L ++ S AN I +F++P + QK E+GA L++GWA A+L ++GG + C S
Sbjct: 126 LAALLTLVPVSWSANTIIRDFYNPLVPDAQKREMGAGLYVGWAAAALQLLGGALLCCSCP 185
Query: 652 DNNKK 666
+KK
Sbjct: 186 PRDKK 190
>ref|XP_852057.1| PREDICTED: similar to claudin 18 isoform 2 isoform 2 [Canis
familiaris].
Length = 261
Score = 129 bits (324), Expect = 5e-30
Identities = 62/187 (33%), Positives = 103/187 (55%), Gaps = 13/187 (6%)
Frame = +1
Query: 124 IAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDFPS 303
+ F+VS+ G + + D W + +T + LW++CV +S+G + C+ + +
Sbjct: 9 LGFIVSLIGIAGIIAATCMDQWSTQDLYNNPVTAVFNYQGLWRSCVRESSGFTECRGYFT 68
Query: 304 MLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGG-SDKAKAKMACLAGIVFILS 480
+L L +QA R LMI + LG G + ++F +KC ++G D AKA M +GI+FI+S
Sbjct: 69 LLGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFIIS 128
Query: 481 GLCSMTGCSLYANKITTEFFDP------------HYVEQKYELGAALFIGWAGASLCIIG 624
GLC++ G S++AN + T F+ V+ +Y G+ALF+GW L +IG
Sbjct: 129 GLCAIVGVSVFANMLVTNFWMSTANMYTGLGGMVQTVQTRYTFGSALFVGWVAGGLTLIG 188
Query: 625 GVIFCFS 645
GV+ C +
Sbjct: 189 GVMMCIA 195
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,519,995
Number of extensions: 954342
Number of successful extensions: 2807
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 2763
Number of HSP's successfully gapped: 25
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008877
(1043 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230373.1| claudin-10 [Sus scrofa]. 467 e-132
Alignment gi|NP_001155115.1| claudin-15 [Sus scrofa]. 191 4e-49
Alignment gi|NP_001153556.1| claudin-19 [Sus scrofa]. 156 2e-38
Alignment gi|NP_001153548.1| claudin-7 [Sus scrofa]. 149 3e-36
Alignment gi|XP_003358291.1| PREDICTED: claudin-7-like [Sus scrofa]. 149 3e-36
Alignment gi|XP_003358797.1| PREDICTED: claudin-1-like [Sus scrofa]. 140 1e-33
Alignment gi|NP_001153553.1| claudin-18 [Sus scrofa]. 132 3e-31
Alignment gi|NP_001155109.1| claudin-4 [Sus scrofa]. 130 1e-30
Alignment gi|NP_001155107.1| claudin-1 [Sus scrofa]. 129 2e-30
Alignment gi|NP_001155108.1| claudin-5 [Sus scrofa]. 125 3e-29
>ref|NP_001230373.1| claudin-10 [Sus scrofa].
Length = 232
Score = 467 bits (1201), Expect = e-132
Identities = 226/226 (100%), Positives = 226/226 (100%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF
Sbjct: 7 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 66
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL
Sbjct: 67 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 126
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN
Sbjct: 127 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 186
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV
Sbjct: 187 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 232
>ref|NP_001155115.1| claudin-15 [Sus scrofa].
Length = 234
Score = 191 bits (486), Expect = 4e-49
Identities = 104/230 (45%), Positives = 134/230 (58%), Gaps = 4/230 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
EI F ++ G VL+ TLP W+VST+ G VITT T + NLW +C TDS GV NC +F
Sbjct: 6 EIFGFFMAALGLVLLGVTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYNCWEF 65
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKMACLAGIVFI 474
PSMLAL GYIQACR LMI A+ LGF G + G++CT +GG + K K+A AG + I
Sbjct: 66 PSMLALSGYIQACRALMITAILLGFLGLFLGMVGLRCTNIGGLELSRKTKLAATAGALHI 125
Query: 475 LSGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFS--- 645
L+G+C M S YA IT +FFDP Y KYELG AL++GW + L I+GG+ C S
Sbjct: 126 LAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWTASLLSILGGICLCSSCCC 185
Query: 646 ISDNNKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
D++ + Y A SS T D + ++ KNAYV
Sbjct: 186 AQDDDPAANVRVPYK-APMPASSLTARLPAVASDEDGDSSFGKYGKNAYV 234
>ref|NP_001153556.1| claudin-19 [Sus scrofa].
Length = 224
Score = 156 bits (395), Expect = 2e-38
Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 3/177 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTAT-YWANLWKACVTDSTGVSNCKD 294
+++ + +++ GWV + ++ WK S+ G I TA + LW +C + STG CK
Sbjct: 7 QLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKL 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDK-AKAKMACLAGIVF 471
+ S+LAL+G+IQ+ R LM+ AV LGF G + ++ GMKCT+VG S+ AK+++A G +F
Sbjct: 67 YDSLLALEGHIQSARALMVVAVLLGFVGMVLSVVGMKCTRVGDSNPIAKSRVAIAGGALF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFC 639
+L+GLC++T S YA +T EFF P V +YE G ALF+GWA A L I+GG C
Sbjct: 127 LLAGLCTLTAVSWYATLVTQEFFSPSTPVNARYEFGPALFVGWAAAGLAILGGSFLC 183
>ref|NP_001153548.1| claudin-7 [Sus scrofa].
Length = 211
Score = 149 bits (376), Expect = 3e-36
Identities = 72/179 (40%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDG-TVITTATYWANLWKACVTDSTGVSNCKD 294
+++ F +++ GWV + + W++S+ G +IT + LW CVT STG+ +CK
Sbjct: 7 QLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKT 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKMACLAGIVF 471
+ S+LAL +QA R LM+ ++ LG GMKCT GG DK KA++A GI+F
Sbjct: 67 YDSVLALSAALQATRALMVVSLVLGLMAMFVGTMGMKCTNCGGDDKVKKARIAMTGGIIF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFCFS 645
I++GLC++ CS Y ++I T+F++P KYE G A+FIGWAG+SL ++GG + S
Sbjct: 127 IVAGLCALIACSWYGHQIVTDFYNPLVPTNVKYEFGPAIFIGWAGSSLVLLGGALLSCS 185
>ref|XP_003358291.1| PREDICTED: claudin-7-like [Sus scrofa].
Length = 211
Score = 149 bits (376), Expect = 3e-36
Identities = 72/179 (40%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDG-TVITTATYWANLWKACVTDSTGVSNCKD 294
+++ F +++ GWV + + W++S+ G +IT + LW CVT STG+ +CK
Sbjct: 7 QLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKT 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKMACLAGIVF 471
+ S+LAL +QA R LM+ ++ LG GMKCT GG DK KA++A GI+F
Sbjct: 67 YDSVLALSAALQATRALMVVSLVLGLMAMFVGTMGMKCTNCGGDDKVKKARIAMTGGIIF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFCFS 645
I++GLC++ CS Y ++I T+F++P KYE G A+FIGWAG+SL ++GG + S
Sbjct: 127 IVAGLCALIACSWYGHQIVTDFYNPLVPTNVKYEFGPAIFIGWAGSSLVLLGGALLSCS 185
>ref|XP_003358797.1| PREDICTED: claudin-1-like [Sus scrofa].
Length = 211
Score = 140 bits (353), Expect = 1e-33
Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 5/181 (2%)
Frame = +1
Query: 118 EIIAFMVSISGWV--LVSSTLPTDYWKVSTIDG-TVITTATYWANLWKACVTDSTGVSNC 288
+++ F+++ GW+ +VS+ LP WK+ + G ++T + LW +CV+ STG C
Sbjct: 7 QLLGFILAFLGWIGSIVSTALPQ--WKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQC 64
Query: 289 KDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKMACLAGI 465
K F S+L L+ +QA R LM+ + LG A GMKC K D+ K +MA + G+
Sbjct: 65 KVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATVGMKCMKCMEDDEVQKMRMAVIGGV 124
Query: 466 VFILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFCF 642
+F++SGL + + Y N+I EF+DP V +YE G ALF GWA ASLC++GG + C
Sbjct: 125 IFLISGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLCC 184
Query: 643 S 645
S
Sbjct: 185 S 185
>ref|NP_001153553.1| claudin-18 [Sus scrofa].
Length = 261
Score = 132 bits (332), Expect = 3e-31
Identities = 62/189 (32%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
+++ F++S+ G + D W + +T+ + LW++CV S+G + C+ +
Sbjct: 7 QVVGFLLSVLGLAGCIAATGMDMWSTQDLYDNPVTSVFQYEGLWRSCVQQSSGFTECRPY 66
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGG-SDKAKAKMACLAGIVFI 474
++L L +QA R LMI + LG G + A+F +KC ++G D +KAKM +GI+FI
Sbjct: 67 FTILGLPAMLQAVRALMIVGIVLGVIGLLVAIFALKCIRIGNMDDPSKAKMTLTSGIMFI 126
Query: 475 LSGLCSMTGCSLYANKITTEFFDP------------HYVEQKYELGAALFIGWAGASLCI 618
+SGLC++ G S++AN + T F+ V+ +Y GAALF+GW L +
Sbjct: 127 ISGLCTIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGGLTL 186
Query: 619 IGGVIFCFS 645
IGG++ C +
Sbjct: 187 IGGIMMCIA 195
>ref|NP_001155109.1| claudin-4 [Sus scrofa].
Length = 209
Score = 130 bits (327), Expect = 1e-30
Identities = 70/203 (34%), Positives = 114/203 (56%), Gaps = 4/203 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWV--LVSSTLPTDYWKVSTIDGT-VITTATYWANLWKACVTDSTGVSNC 288
+++ +++ GW+ ++S LP W+V+ G+ ++T+ T W LW CV STG C
Sbjct: 7 QVMGIALAVLGWLGAILSCALPM--WRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQC 64
Query: 289 KDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIV 468
K + S+LAL +QA R L++ + L G + ++ G KCT + AKAK +AG+V
Sbjct: 65 KVYDSLLALPQDLQAARALIVICIILAVLGVLLSVVGGKCTNCVDDESAKAKTMIVAGVV 124
Query: 469 FILSGLCSMTGCSLYANKITTEFFDPHYVE-QKYELGAALFIGWAGASLCIIGGVIFCFS 645
F+L+GL M S A+ + +F++P QK E+GA+L+IGWA + L ++GG + C +
Sbjct: 125 FLLAGLLVMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWAASGLLMLGGALLCCN 184
Query: 646 ISDNNKKPRMGYTYNGATSVMSS 714
KP Y+ A S +S
Sbjct: 185 CPPRTDKP-YSAKYSAARSAPAS 206
>ref|NP_001155107.1| claudin-1 [Sus scrofa].
Length = 211
Score = 129 bits (325), Expect = 2e-30
Identities = 68/181 (37%), Positives = 104/181 (57%), Gaps = 5/181 (2%)
Frame = +1
Query: 118 EIIAFMVSISGWV--LVSSTLPTDYWKVSTIDG-TVITTATYWANLWKACVTDSTGVSNC 288
+++ F+++ GW+ +VS+ L WK+ + G ++T + LW +CV+ STG C
Sbjct: 7 QLLGFILAFLGWIGSIVSTALLQ--WKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQC 64
Query: 289 KDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKMACLAGI 465
K F S+L L+ +QA R LM+ + LG A GMKC K D+ K +MA + G+
Sbjct: 65 KVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATVGMKCMKCMEDDEVQKMRMAVIGGV 124
Query: 466 VFILSGLCSMTGCSLYANKITTEFFD-PHYVEQKYELGAALFIGWAGASLCIIGGVIFCF 642
+F++SGL + + Y N+I EF+ V +YE G ALF GWA ASLC++GG + C
Sbjct: 125 IFLISGLAILVATARYGNRIVQEFYHLMTPVNARYEFGQALFTGWAAASLCLLGGALLCR 184
Query: 643 S 645
S
Sbjct: 185 S 185
>ref|NP_001155108.1| claudin-5 [Sus scrofa].
Length = 218
Score = 125 bits (315), Expect = 3e-29
Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 2/190 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVST-IDGTVITTATYWANLWKACVTDSTGVSNCKD 294
EI+ ++ + GWV + W+V+ +D ++T T W LW +CV STG CK
Sbjct: 7 EILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKV 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFI 474
+ S+LAL +QA R L + AV L L G +CT KA++A G ++
Sbjct: 67 YDSVLALSTEVQAARALTVGAVLLALVALFVTLAGAQCTTCVAPGPGKARVALTGGALYA 126
Query: 475 LSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFCFSIS 651
L GL ++ +AN + EF+DP + QKYELGAAL+IGWA ++L + GG + C
Sbjct: 127 LCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASALLMCGGGLVCCGAW 186
Query: 652 DNNKKPRMGY 681
+P +G+
Sbjct: 187 LCAGRPDLGF 196
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,864,458
Number of extensions: 707579
Number of successful extensions: 1757
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 1715
Number of HSP's successfully gapped: 23
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008877
(1043 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067361.2| claudin-10A isoform b [Mus musculus]. 425 e-119
Alignment gi|NP_001153571.1| claudin-10A isoform b_i1 [Mus musculus]. 335 3e-92
Alignment gi|NP_076367.2| claudin-10A isoform a [Mus musculus]. 328 6e-90
Alignment gi|NP_001153568.1| claudin-10A isoform a_i1 [Mus musculus]. 312 3e-85
Alignment gi|NP_001153569.1| claudin-10A isoform a_i2 [Mus musculus]. 238 8e-63
Alignment gi|NP_001153570.1| claudin-10A isoform a_i3 [Mus musculus]. 222 4e-58
Alignment gi|NP_068365.1| claudin-15 [Mus musculus]. 192 3e-49
Alignment gi|NP_001033679.1| claudin-19 isoform 1 [Mus musculus]. 155 5e-38
Alignment gi|NP_694745.1| claudin-19 isoform 2 [Mus musculus]. 155 5e-38
Alignment gi|NP_001180548.1| claudin-7 [Mus musculus]. 151 7e-37
>ref|NP_067361.2| claudin-10A isoform b [Mus musculus].
Length = 231
Score = 425 bits (1093), Expect = e-119
Identities = 208/226 (92%), Positives = 216/226 (95%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
EI+AF+VSISGWVLVSSTLPTDYWKVSTIDGTVITTATY+ANLWK CVTDSTGV+NCK+F
Sbjct: 7 EIVAFVVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYFANLWKICVTDSTGVANCKEF 66
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD+AKAK+ACLAGIVFIL
Sbjct: 67 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDQAKAKIACLAGIVFIL 126
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP Y+EQKYELGAALFIGWAGASLCIIGGVIFCFSISDN
Sbjct: 127 SGLCSMTGCSLYANKITTEFFDPLYMEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 186
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
NK PRMGYTYNG TS MSSRTKY GG GD KTT PSKQFDKNAYV
Sbjct: 187 NKTPRMGYTYNGPTSAMSSRTKYQ-GGEGDFKTTGPSKQFDKNAYV 231
>ref|NP_001153571.1| claudin-10A isoform b_i1 [Mus musculus].
Length = 195
Score = 335 bits (859), Expect = 3e-92
Identities = 173/226 (76%), Positives = 181/226 (80%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
EI+AF+VSISGWVLVSSTLPTDYWKVSTIDGTVITTATY+ANLWK CVTDSTGV+NCK+F
Sbjct: 7 EIVAFVVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYFANLWKICVTDSTGVANCKEF 66
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD+AKAK+ACLAGIVFIL
Sbjct: 67 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDQAKAKIACLAGIVFIL 126
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP Y+EQK
Sbjct: 127 SGLCSMTGCSLYANKITTEFFDPLYMEQK------------------------------- 155
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
MGYTYNG TS MSSRTKY GG GD KTT PSKQFDKNAYV
Sbjct: 156 -----MGYTYNGPTSAMSSRTKYQ-GGEGDFKTTGPSKQFDKNAYV 195
>ref|NP_076367.2| claudin-10A isoform a [Mus musculus].
Length = 229
Score = 328 bits (840), Expect = 6e-90
Identities = 162/226 (71%), Positives = 184/226 (81%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
+I A + + G+ + + ++ WKV+T +VIT + LW C ++ G +C+
Sbjct: 5 QISALVCGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPH 64
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
++ ++GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD+AKAK+ACLAGIVFIL
Sbjct: 65 FTIFKVEGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDQAKAKIACLAGIVFIL 124
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP Y+EQKYELGAALFIGWAGASLCIIGGVIFCFSISDN
Sbjct: 125 SGLCSMTGCSLYANKITTEFFDPLYMEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 184
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
NK PRMGYTYNG TS MSSRTKY GG GD KTT PSKQFDKNAYV
Sbjct: 185 NKTPRMGYTYNGPTSAMSSRTKYQ-GGEGDFKTTGPSKQFDKNAYV 229
>ref|NP_001153568.1| claudin-10A isoform a_i1 [Mus musculus].
Length = 210
Score = 312 bits (799), Expect = 3e-85
Identities = 160/226 (70%), Positives = 174/226 (76%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
+I A + + G+ + + ++ WKV+T +VIT + LW C
Sbjct: 5 QISALVCGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCA------------ 52
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD+AKAK+ACLAGIVFIL
Sbjct: 53 -------GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDQAKAKIACLAGIVFIL 105
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP Y+EQKYELGAALFIGWAGASLCIIGGVIFCFSISDN
Sbjct: 106 SGLCSMTGCSLYANKITTEFFDPLYMEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 165
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
NK PRMGYTYNG TS MSSRTKY GG GD KTT PSKQFDKNAYV
Sbjct: 166 NKTPRMGYTYNGPTSAMSSRTKYQ-GGEGDFKTTGPSKQFDKNAYV 210
>ref|NP_001153569.1| claudin-10A isoform a_i2 [Mus musculus].
Length = 193
Score = 238 bits (606), Expect = 8e-63
Identities = 127/226 (56%), Positives = 149/226 (65%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
+I A + + G+ + + ++ WKV+T +VIT + LW C ++ G +C+
Sbjct: 5 QISALVCGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPH 64
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
++ ++GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD+AKAK+ACLAGIVFIL
Sbjct: 65 FTIFKVEGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDQAKAKIACLAGIVFIL 124
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP Y+EQK
Sbjct: 125 SGLCSMTGCSLYANKITTEFFDPLYMEQK------------------------------- 153
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
MGYTYNG TS MSSRTKY GG GD KTT PSKQFDKNAYV
Sbjct: 154 -----MGYTYNGPTSAMSSRTKYQ-GGEGDFKTTGPSKQFDKNAYV 193
>ref|NP_001153570.1| claudin-10A isoform a_i3 [Mus musculus].
Length = 174
Score = 222 bits (565), Expect = 4e-58
Identities = 125/226 (55%), Positives = 139/226 (61%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
+I A + + G+ + + ++ WKV+T +VIT + LW C
Sbjct: 5 QISALVCGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCA------------ 52
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD+AKAK+ACLAGIVFIL
Sbjct: 53 -------GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDQAKAKIACLAGIVFIL 105
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP Y+EQK
Sbjct: 106 SGLCSMTGCSLYANKITTEFFDPLYMEQK------------------------------- 134
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
MGYTYNG TS MSSRTKY GG GD KTT PSKQFDKNAYV
Sbjct: 135 -----MGYTYNGPTSAMSSRTKYQ-GGEGDFKTTGPSKQFDKNAYV 174
>ref|NP_068365.1| claudin-15 [Mus musculus].
Length = 227
Score = 192 bits (489), Expect = 3e-49
Identities = 104/230 (45%), Positives = 133/230 (57%), Gaps = 4/230 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
E F +S G +++ TL YW+VST+ G VITT T + NLW +C TDS GVSNC DF
Sbjct: 6 ETFGFFMSALGLLMLGLTLSNSYWRVSTVHGNVITTNTIFENLWYSCATDSLGVSNCWDF 65
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKMACLAGIVFI 474
PSMLAL GY+Q CR LMI A+ LGF G + G++CT VG D KAK+ +AG + I
Sbjct: 66 PSMLALSGYVQGCRALMITAILLGFLGLFLGMVGLRCTNVGNMDLSKKAKLLAIAGTLHI 125
Query: 475 LSGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIF---CFS 645
L+G C M S YA ITT+FF+P Y KYELG AL++GW+ + L I+GG+ C
Sbjct: 126 LAGACGMVAISWYAVNITTDFFNPLYAGTKYELGPALYLGWSASLLSILGGICVFSTCCC 185
Query: 646 ISDNNKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
S R G Y +T V+ T D + K + KNAYV
Sbjct: 186 SSKEEPATRAGLPYKPSTVVIPRAT-------SDESDISFGK-YGKNAYV 227
>ref|NP_001033679.1| claudin-19 isoform 1 [Mus musculus].
Length = 224
Score = 155 bits (392), Expect = 5e-38
Identities = 77/198 (38%), Positives = 119/198 (60%), Gaps = 3/198 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTAT-YWANLWKACVTDSTGVSNCKD 294
+++ + +++ GWV + ++ WK S+ G I TA + LW +C + STG CK
Sbjct: 7 QLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKL 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKMACLAGIVF 471
+ S+LALDG+IQ+ R LM+ AV LGF + ++ GMKCT+VG S+ AK+++A G +F
Sbjct: 67 YDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKSRVAISGGALF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFCFSI 648
+L+GLC++T S YA +T EFF+P V +YE G ALF+GWA A L ++GG C +
Sbjct: 127 LLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAMLGGSFLCCTC 186
Query: 649 SDNNKKPRMGYTYNGATS 702
+ + + Y S
Sbjct: 187 PEPERANSIPQPYRSGPS 204
>ref|NP_694745.1| claudin-19 isoform 2 [Mus musculus].
Length = 211
Score = 155 bits (392), Expect = 5e-38
Identities = 77/198 (38%), Positives = 119/198 (60%), Gaps = 3/198 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTAT-YWANLWKACVTDSTGVSNCKD 294
+++ + +++ GWV + ++ WK S+ G I TA + LW +C + STG CK
Sbjct: 7 QLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKL 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKMACLAGIVF 471
+ S+LALDG+IQ+ R LM+ AV LGF + ++ GMKCT+VG S+ AK+++A G +F
Sbjct: 67 YDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKSRVAISGGALF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFCFSI 648
+L+GLC++T S YA +T EFF+P V +YE G ALF+GWA A L ++GG C +
Sbjct: 127 LLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAMLGGSFLCCTC 186
Query: 649 SDNNKKPRMGYTYNGATS 702
+ + + Y S
Sbjct: 187 PEPERANSIPQPYRSGPS 204
>ref|NP_001180548.1| claudin-7 [Mus musculus].
Length = 211
Score = 151 bits (382), Expect = 7e-37
Identities = 75/186 (40%), Positives = 117/186 (62%), Gaps = 3/186 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDG-TVITTATYWANLWKACVTDSTGVSNCKD 294
+++ F +++ GWV + ++ W++S+ G +IT + LW CVT STG+ +CK
Sbjct: 7 QLLGFSMAMLGWVGLIASTAIPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTGMMSCKM 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKMACLAGIVF 471
+ S+LAL G +QA R LM+ ++ LGF A GMKCT+ GG DKA KA++A GIVF
Sbjct: 67 YDSVLALPGALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKAKKARIAMTGGIVF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDP-HYVEQKYELGAALFIGWAGASLCIIGGVIFCFSI 648
I++GL ++ CS ++I T+F++P + KYE G A+FIGWAG++L ++GG + S
Sbjct: 127 IVAGLAALVACSWIGHQIVTDFYNPLTPMNVKYEFGPAIFIGWAGSALVLLGGALLSCSC 186
Query: 649 SDNNKK 666
+ K
Sbjct: 187 PGSESK 192
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,782,039
Number of extensions: 816257
Number of successful extensions: 2340
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 2276
Number of HSP's successfully gapped: 37
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008877
(1043 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008915.1| claudin-10 isoform b [Homo sapiens]. 434 e-122
Alignment gi|NP_878268.1| claudin-10 isoform a [Homo sapiens]. 323 1e-88
Alignment gi|NP_001153572.1| claudin-10 isoform a_i1 [Homo sapiens]. 309 2e-84
Alignment gi|NP_001172009.1| claudin-15 [Homo sapiens]. 194 1e-49
Alignment gi|NP_055158.1| claudin-15 [Homo sapiens]. 194 1e-49
Alignment gi|NP_001116867.1| claudin-19 isoform b [Homo sapiens]. 156 3e-38
Alignment gi|NP_683763.2| claudin-19 isoform a [Homo sapiens]. 156 3e-38
Alignment gi|NP_001171951.1| claudin-7 isoform 1 [Homo sapiens]. 151 1e-36
Alignment gi|NP_001298.3| claudin-7 isoform 1 [Homo sapiens]. 151 1e-36
Alignment gi|NP_001297.1| claudin-3 [Homo sapiens]. 138 1e-32
>ref|NP_008915.1| claudin-10 isoform b [Homo sapiens].
Length = 228
Score = 434 bits (1115), Expect = e-122
Identities = 216/226 (95%), Positives = 218/226 (96%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF
Sbjct: 7 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 66
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAK+ACLAGIVFIL
Sbjct: 67 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFIL 126
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP +VEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN
Sbjct: 127 SGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 186
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
NK PR YTYNGATSVMSSRTKYH GG D KTTNPSKQFDKNAYV
Sbjct: 187 NKTPR--YTYNGATSVMSSRTKYH--GGEDFKTTNPSKQFDKNAYV 228
>ref|NP_878268.1| claudin-10 isoform a [Homo sapiens].
Length = 226
Score = 323 bits (829), Expect = 1e-88
Identities = 164/226 (72%), Positives = 184/226 (81%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
+I A + + G+ + + ++ WKV+T +VIT + LW C ++ G +C+
Sbjct: 5 QIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPH 64
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
++ + GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAK+ACLAGIVFIL
Sbjct: 65 FTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFIL 124
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP +VEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN
Sbjct: 125 SGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 184
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
NK PR YTYNGATSVMSSRTKYH GG D KTTNPSKQFDKNAYV
Sbjct: 185 NKTPR--YTYNGATSVMSSRTKYH--GGEDFKTTNPSKQFDKNAYV 226
>ref|NP_001153572.1| claudin-10 isoform a_i1 [Homo sapiens].
Length = 207
Score = 309 bits (792), Expect = 2e-84
Identities = 162/226 (71%), Positives = 175/226 (77%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
+I A + + G+ + + ++ WKV+T +VIT + LW C
Sbjct: 5 QIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCA------------ 52
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIVFIL 477
GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAK+ACLAGIVFIL
Sbjct: 53 -------GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFIL 105
Query: 478 SGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 657
SGLCSMTGCSLYANKITTEFFDP +VEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN
Sbjct: 106 SGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDN 165
Query: 658 NKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
NK PR YTYNGATSVMSSRTKYH GG D KTTNPSKQFDKNAYV
Sbjct: 166 NKTPR--YTYNGATSVMSSRTKYH--GGEDFKTTNPSKQFDKNAYV 207
>ref|NP_001172009.1| claudin-15 [Homo sapiens].
Length = 228
Score = 194 bits (493), Expect = 1e-49
Identities = 101/230 (43%), Positives = 137/230 (59%), Gaps = 4/230 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
E F ++ G +++ TLP YW+VST+ G VITT T + NLW +C TDS GV NC +F
Sbjct: 6 ETFGFFMATVGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSCATDSLGVYNCWEF 65
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKMACLAGIVFI 474
PSMLAL GYIQACR LMI A+ LGF G + + G++CT +GG + KAK+A AG + I
Sbjct: 66 PSMLALSGYIQACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALHI 125
Query: 475 LSGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSI-- 648
L+G+C M S YA IT +FFDP Y KYELG AL++GW+ + + I+GG+ C +
Sbjct: 126 LAGICGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWSASLISILGGLCLCSACCC 185
Query: 649 -SDNNKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
SD + Y SVM T D + + ++ +NAYV
Sbjct: 186 GSDEDPAASARRPYQAPVSVMPVAT-------SDQEGDSSFGKYGRNAYV 228
>ref|NP_055158.1| claudin-15 [Homo sapiens].
Length = 228
Score = 194 bits (493), Expect = 1e-49
Identities = 101/230 (43%), Positives = 137/230 (59%), Gaps = 4/230 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDF 297
E F ++ G +++ TLP YW+VST+ G VITT T + NLW +C TDS GV NC +F
Sbjct: 6 ETFGFFMATVGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSCATDSLGVYNCWEF 65
Query: 298 PSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKMACLAGIVFI 474
PSMLAL GYIQACR LMI A+ LGF G + + G++CT +GG + KAK+A AG + I
Sbjct: 66 PSMLALSGYIQACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALHI 125
Query: 475 LSGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCFSI-- 648
L+G+C M S YA IT +FFDP Y KYELG AL++GW+ + + I+GG+ C +
Sbjct: 126 LAGICGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWSASLISILGGLCLCSACCC 185
Query: 649 -SDNNKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 795
SD + Y SVM T D + + ++ +NAYV
Sbjct: 186 GSDEDPAASARRPYQAPVSVMPVAT-------SDQEGDSSFGKYGRNAYV 228
>ref|NP_001116867.1| claudin-19 isoform b [Homo sapiens].
Length = 211
Score = 156 bits (394), Expect = 3e-38
Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTAT-YWANLWKACVTDSTGVSNCKD 294
+++ + +++ GWV + ++ WK S+ G I TA + LW +C + STG CK
Sbjct: 7 QLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKL 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDK-AKAKMACLAGIVF 471
+ S+LALDG+IQ+ R LM+ AV LGF + ++ GMKCT+VG S+ AK ++A G +F
Sbjct: 67 YDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGALF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFC 639
IL+GLC++T S YA +T EFF+P V +YE G ALF+GWA A L ++GG C
Sbjct: 127 ILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGGSFLC 183
>ref|NP_683763.2| claudin-19 isoform a [Homo sapiens].
Length = 224
Score = 156 bits (394), Expect = 3e-38
Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTAT-YWANLWKACVTDSTGVSNCKD 294
+++ + +++ GWV + ++ WK S+ G I TA + LW +C + STG CK
Sbjct: 7 QLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKL 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDK-AKAKMACLAGIVF 471
+ S+LALDG+IQ+ R LM+ AV LGF + ++ GMKCT+VG S+ AK ++A G +F
Sbjct: 67 YDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGALF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFC 639
IL+GLC++T S YA +T EFF+P V +YE G ALF+GWA A L ++GG C
Sbjct: 127 ILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGGSFLC 183
>ref|NP_001171951.1| claudin-7 isoform 1 [Homo sapiens].
Length = 211
Score = 151 bits (381), Expect = 1e-36
Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 3/186 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDG-TVITTATYWANLWKACVTDSTGVSNCKD 294
+++ F +++ GWV + + W++S+ G +IT + LW CVT STG+ +CK
Sbjct: 7 QLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKM 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKMACLAGIVF 471
+ S+LAL +QA R LM+ ++ LGF A GMKCT+ GG DK KA++A GI+F
Sbjct: 67 YDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGIIF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFCFSI 648
I++GL ++ CS Y ++I T+F++P KYE G A+FIGWAG++L I+GG + S
Sbjct: 127 IVAGLAALVACSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSALVILGGALLSCSC 186
Query: 649 SDNNKK 666
N K
Sbjct: 187 PGNESK 192
>ref|NP_001298.3| claudin-7 isoform 1 [Homo sapiens].
Length = 211
Score = 151 bits (381), Expect = 1e-36
Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 3/186 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWVLVSSTLPTDYWKVSTIDG-TVITTATYWANLWKACVTDSTGVSNCKD 294
+++ F +++ GWV + + W++S+ G +IT + LW CVT STG+ +CK
Sbjct: 7 QLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKM 66
Query: 295 FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKMACLAGIVF 471
+ S+LAL +QA R LM+ ++ LGF A GMKCT+ GG DK KA++A GI+F
Sbjct: 67 YDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGIIF 126
Query: 472 ILSGLCSMTGCSLYANKITTEFFDPHY-VEQKYELGAALFIGWAGASLCIIGGVIFCFSI 648
I++GL ++ CS Y ++I T+F++P KYE G A+FIGWAG++L I+GG + S
Sbjct: 127 IVAGLAALVACSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSALVILGGALLSCSC 186
Query: 649 SDNNKK 666
N K
Sbjct: 187 PGNESK 192
>ref|NP_001297.1| claudin-3 [Homo sapiens].
Length = 220
Score = 138 bits (347), Expect = 1e-32
Identities = 82/211 (38%), Positives = 119/211 (56%), Gaps = 4/211 (1%)
Frame = +1
Query: 118 EIIAFMVSISGWV--LVSSTLPTDYWKVSTIDGT-VITTATYWANLWKACVTDSTGVSNC 288
EI +++ GW+ +V LP W+VS G+ +IT+ W LW CV STG C
Sbjct: 6 EITGTALAVLGWLGTIVCCALPM--WRVSAFIGSNIITSQNIWEGLWMNCVVQSTGQMQC 63
Query: 289 KDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAGIV 468
K + S+LAL +QA R L++ A+ L FG + AL G +CT D AKAK+ +AG++
Sbjct: 64 KVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAGVL 123
Query: 469 FILSGLCSMTGCSLYANKITTEFFDPHYVE-QKYELGAALFIGWAGASLCIIGGVIFCFS 645
F+L+ L ++ S AN I +F++P E QK E+GA L++GWA A+L ++GG + C S
Sbjct: 124 FLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKREMGAGLYVGWAAAALQLLGGALLCCS 183
Query: 646 ISDNNKKPRMGYTYNGATSVMSSRTKYHGGG 738
KK YT AT V+ S + G G
Sbjct: 184 CPPREKK----YT---ATKVVYSAPRSTGPG 207
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,048,398
Number of extensions: 943192
Number of successful extensions: 2822
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 2755
Number of HSP's successfully gapped: 36
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008877
(1043 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 735 0.0
>Sscrofa_Chr11
|| Length = 87690581
Score = 735 bits (371), Expect = 0.0
Identities = 374/375 (99%)
Strand = Plus / Plus
Query: 669 cagaatgggatacacatacaatggggccacatctgtcatgtcttctcggacaaagtatca 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72006352 cagaatgggatacacatacaatggggccacatctgtcatgtcttctcggacaaagtatca 72006411
Query: 729 cggaggaggaggaggagatctgaaaaccacaaacccttccaaacagtttgacaaaaatgc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72006412 cggaggaggaggaggagatctgaaaaccacaaacccttccaaacagtttgacaaaaatgc 72006471
Query: 789 ttatgtctaagaagagcactgccgcaagctgtgtcttgagcttgttagaaacgtgaactg 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72006472 ttatgtctaagaagagcactgccgcaagctgtgtcttgagcttgttagaaacgtgaactg 72006531
Query: 849 ttcacagaatgatcccctcaaggccctcctgtaattaacactcgaaaaaactatttttca 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72006532 ttcacagaatgatcccctcaaggccctcctgtaattaacactcgaaaaaactatttttca 72006591
Query: 909 aatgcgaatgtgaagaatttgttgattgcatggatgtaaatgttcttacatagttacata 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72006592 aatgcgaatgtgaagaatttgttgattgcatggatgtaaatgttcttacatagttacata 72006651
Query: 969 ctaatcactttctgttgtggctttctataacaaataaacaagctatttacaagatttgta 1028
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 72006652 ctaatcactttctgttgtggctttctataacaaataaacaagctatttacaggatttgta 72006711
Query: 1029 tatattttatacatc 1043
|||||||||||||||
Sbjct: 72006712 tatattttatacatc 72006726
Score = 490 bits (247), Expect = e-136
Identities = 253/255 (99%)
Strand = Plus / Plus
Query: 67 agagcgagctcaagcgcagctgcagcgggcagtatggcgagcacggcgtcggagatcatt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71983313 agagcgagctcaagcgcagctgcagcgggcagtatggcgagcacggcgtcggagatcatt 71983372
Query: 127 gccttcatggtctccatctccggctgggtgttggtgtcctccacgctgcccaccgactac 186
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 71983373 gccttcatggtctccatctccggctgggtgctggtgtcctccacgctgcccaccgactac 71983432
Query: 187 tggaaagtgtccaccatcgacggcacggtcatcaccaccgccacctattgggccaacctg 246
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71983433 tggaaggtgtccaccatcgacggcacggtcatcaccaccgccacctattgggccaacctg 71983492
Query: 247 tggaaggcatgcgttaccgactccacgggcgtctccaattgcaaggatttcccctccatg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71983493 tggaaggcatgcgttaccgactccacgggcgtctccaattgcaaggatttcccctccatg 71983552
Query: 307 ctggcgctggacggt 321
|||||||||||||||
Sbjct: 71983553 ctggcgctggacggt 71983567
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 319 ggttatatccaggcatgtcgaggacttatgattgccgctgtcagcctgggcttttttggt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71990077 ggttatatccaggcatgtcgaggacttatgattgccgctgtcagcctgggcttttttggt 71990136
Query: 379 tccatatttgccctgtttggaatgaaatgtaccaaggtcggaggctcagataaagccaaa 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71990137 tccatatttgccctgtttggaatgaaatgtaccaaggtcggaggctcagataaagccaaa 71990196
Query: 439 gctaaaatggcttgtttggctgggattgtattcatactgtcagg 482
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71990197 gctaaaatggcttgtttggctgggattgtattcatactgtcagg 71990240
Score = 206 bits (104), Expect = 2e-50
Identities = 107/108 (99%)
Strand = Plus / Plus
Query: 564 gtatgaattgggagctgctctgtttattggatgggcaggagcctcactctgcataattgg 623
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72005542 gtatgaattaggagctgctctgtttattggatgggcaggagcctcactctgcataattgg 72005601
Query: 624 tggtgtcatattttgcttttcaatatctgacaacaacaaaaaacccag 671
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72005602 tggtgtcatattttgcttttcaatatctgacaacaacaaaaaacccag 72005649
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 480 agggctgtgctcaatgaccgggtgttccctgtatgcaaacaaaatcacaacggaattctt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71990326 agggctgtgctcaatgaccgggtgttccctgtatgcaaacaaaatcacaacggaattctt 71990385
Query: 540 tgatccccactacgtggagcagaagta 566
|||||||||||||||||||||||||||
Sbjct: 71990386 tgatccccactacgtggagcagaagta 71990412
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,792,804
Number of extensions: 584
Number of successful extensions: 584
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 5
Length of query: 1043
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1022
Effective length of database: 2,808,413,156
Effective search space: 2870198245432
Effective search space used: 2870198245432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)