Animal-Genome cDNA 20110601C-008878


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008878
         (953 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001179935.1| WD repeat-containing protein 8 [Bos taurus].      568   e-162
Alignment   gi|XP_002694166.1| PREDICTED: WD repeat domain 8 [Bos taurus].       568   e-162
Alignment   gi|XP_001790573.1| PREDICTED: hypothetical protein, partial [Bo...   240   1e-63

>ref|NP_001179935.1| WD repeat-containing protein 8 [Bos taurus].
          Length = 458

 Score =  568 bits (1464), Expect = e-162
 Identities = 264/294 (89%), Positives = 282/294 (95%)
 Frame = +3

Query: 51  MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
           MNFSEVFKLS+LLCKFSPDGKYLASC+QYRLVVRDA+TLQILQLYTCLDQIQH+EWSADS
Sbjct: 1   MNFSEVFKLSSLLCKFSPDGKYLASCIQYRLVVRDANTLQILQLYTCLDQIQHLEWSADS 60

Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
           LFILCALY+RGLVQVWSLEQP+WHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61  LFILCALYKRGLVQVWSLEQPEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120

Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
           LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRD+VSIFVCSDWQLLRHF+TDTQD
Sbjct: 121 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDYVSIFVCSDWQLLRHFDTDTQD 180

Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
           LAGIEWAPNGCVLA WD+CLEYK+LLYSLDGRLLS +CAYEWSLGIKSVAWSPSSQFLA+
Sbjct: 181 LAGIEWAPNGCVLAVWDSCLEYKVLLYSLDGRLLSAFCAYEWSLGIKSVAWSPSSQFLAI 240

Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQP 932
           GSYDGKVR+LNHVTWK++ E GHPA V++P  VVY+EAEKSPP  LG LA P P
Sbjct: 241 GSYDGKVRILNHVTWKMITEFGHPATVNNPKIVVYKEAEKSPP--LGHLACPPP 292


>ref|XP_002694166.1| PREDICTED: WD repeat domain 8 [Bos taurus].
          Length = 458

 Score =  568 bits (1464), Expect = e-162
 Identities = 264/294 (89%), Positives = 282/294 (95%)
 Frame = +3

Query: 51  MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
           MNFSEVFKLS+LLCKFSPDGKYLASC+QYRLVVRDA+TLQILQLYTCLDQIQH+EWSADS
Sbjct: 1   MNFSEVFKLSSLLCKFSPDGKYLASCIQYRLVVRDANTLQILQLYTCLDQIQHLEWSADS 60

Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
           LFILCALY+RGLVQVWSLEQP+WHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61  LFILCALYKRGLVQVWSLEQPEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120

Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
           LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRD+VSIFVCSDWQLLRHF+TDTQD
Sbjct: 121 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDYVSIFVCSDWQLLRHFDTDTQD 180

Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
           LAGIEWAPNGCVLA WD+CLEYK+LLYSLDGRLLS +CAYEWSLGIKSVAWSPSSQFLA+
Sbjct: 181 LAGIEWAPNGCVLAVWDSCLEYKVLLYSLDGRLLSAFCAYEWSLGIKSVAWSPSSQFLAI 240

Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQP 932
           GSYDGKVR+LNHVTWK++ E GHPA V++P  VVY+EAEKSPP  LG LA P P
Sbjct: 241 GSYDGKVRILNHVTWKMITEFGHPATVNNPKIVVYKEAEKSPP--LGHLACPPP 292


>ref|XP_001790573.1| PREDICTED: hypothetical protein, partial [Bos taurus].
          Length = 296

 Score =  240 bits (613), Expect = 1e-63
 Identities = 109/132 (82%), Positives = 120/132 (90%)
 Frame = +3

Query: 537 FVCSDWQLLRHFETDTQDLAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEW 716
           FVCSDWQLLRHF+TDTQDLAGIEWAPNGCVLA WD+CLEYK+LLYSLDGRLLS +CAYEW
Sbjct: 1   FVCSDWQLLRHFDTDTQDLAGIEWAPNGCVLAVWDSCLEYKVLLYSLDGRLLSAFCAYEW 60

Query: 717 SLGIKSVAWSPSSQFLAVGSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSP 896
           SLGIKSVAWSPSSQFLA+GSYDGKVR+LNHVTWK++ E GHPA V++P  VVY+EAEKSP
Sbjct: 61  SLGIKSVAWSPSSQFLAIGSYDGKVRILNHVTWKMITEFGHPATVNNPKIVVYKEAEKSP 120

Query: 897 PLALGRLAFPQP 932
           P  LG LA P P
Sbjct: 121 P--LGHLACPPP 130


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,744,672
Number of extensions: 1431805
Number of successful extensions: 10198
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9560
Number of HSP's successfully gapped: 3
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008878
         (953 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536722.2| PREDICTED: similar to WD-repeat protein 8 [Cani...   581   e-166

>ref|XP_536722.2| PREDICTED: similar to WD-repeat protein 8 [Canis familiaris].
          Length = 460

 Score =  581 bits (1498), Expect = e-166
 Identities = 267/300 (89%), Positives = 286/300 (95%)
 Frame = +3

Query: 51  MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
           MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRD +TLQILQLYTCLDQIQHIEWSADS
Sbjct: 1   MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDVNTLQILQLYTCLDQIQHIEWSADS 60

Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
           LFILCA+Y+RGLVQVWSLEQP+WHC+IDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61  LFILCAMYKRGLVQVWSLEQPEWHCRIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120

Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
           LCTKSVSYIKYPKACQQGITFTRDGRY+ALAERRDC+DHVS+FVCSDWQLLRHF+T+TQD
Sbjct: 121 LCTKSVSYIKYPKACQQGITFTRDGRYMALAERRDCKDHVSVFVCSDWQLLRHFDTETQD 180

Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
           LAGIEWAPNGCVLA WDTCLEYK+LLYSLDGRLLS YCAYEWSLG+KSVAWSPSSQFLAV
Sbjct: 181 LAGIEWAPNGCVLAVWDTCLEYKVLLYSLDGRLLSAYCAYEWSLGVKSVAWSPSSQFLAV 240

Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQPEPRPVP 950
           GSYDGKVR+LNHVTWK++ E GHPA V++P  VVY+EAEK+P LALGRLAFP P   P P
Sbjct: 241 GSYDGKVRILNHVTWKMITEFGHPATVNNPKIVVYKEAEKNPRLALGRLAFPPPRAAPGP 300


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,403,360
Number of extensions: 1461899
Number of successful extensions: 10732
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10239
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008878
         (953 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003127564.1| PREDICTED: WD repeat-containing protein 8-li...   613   e-176

>ref|XP_003127564.1| PREDICTED: WD repeat-containing protein 8-like [Sus scrofa].
          Length = 460

 Score =  613 bits (1580), Expect = e-176
 Identities = 293/294 (99%), Positives = 293/294 (99%)
 Frame = +3

Query: 51  MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
           MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS
Sbjct: 1   MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 60

Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
           LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61  LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120

Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
           LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD
Sbjct: 121 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 180

Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
           LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV
Sbjct: 181 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 240

Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQP 932
           GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFP P
Sbjct: 241 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPPP 294


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,656,273
Number of extensions: 927880
Number of successful extensions: 6510
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6152
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008878
         (953 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_067474.2| WD repeat domain 8 [Mus musculus].                   572   e-163

>ref|NP_067474.2| WD repeat domain 8 [Mus musculus].
          Length = 462

 Score =  572 bits (1474), Expect = e-163
 Identities = 263/294 (89%), Positives = 281/294 (95%)
 Frame = +3

Query: 51  MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
           MNFSE FKLS LLC+FSPDGKYLASCVQYRLV+RD +TLQILQLYTCLDQIQHIEWSADS
Sbjct: 1   MNFSESFKLSGLLCRFSPDGKYLASCVQYRLVIRDVTTLQILQLYTCLDQIQHIEWSADS 60

Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
           LFILCA+YRRGLVQVWSLEQP+WHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61  LFILCAMYRRGLVQVWSLEQPEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120

Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
           LCTKSVSYIKYPKACQQG+TFTRDGRYLALAERRDCRD+VSIFVCSDWQLLRHF+TDTQD
Sbjct: 121 LCTKSVSYIKYPKACQQGLTFTRDGRYLALAERRDCRDYVSIFVCSDWQLLRHFDTDTQD 180

Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
           L GIEWAPNGCVLAAWDTCLEYK+LLYSLDGRLLS YCAYEWSLGIKSVAWSPSSQFLA+
Sbjct: 181 LTGIEWAPNGCVLAAWDTCLEYKVLLYSLDGRLLSAYCAYEWSLGIKSVAWSPSSQFLAI 240

Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQP 932
           GSYDGKVR+LNHVTWK++ E GHPA +++P TVVY+EAEKSP L LG L+FP P
Sbjct: 241 GSYDGKVRLLNHVTWKMITEFGHPATINNPKTVVYKEAEKSPLLGLGHLSFPPP 294


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,429,377
Number of extensions: 1166616
Number of successful extensions: 7500
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7119
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008878
         (953 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_060288.3| WD repeat-containing protein WRAP73 [Homo sapie...   568   e-162

>ref|NP_060288.3| WD repeat-containing protein WRAP73 [Homo sapiens].
          Length = 460

 Score =  568 bits (1463), Expect = e-162
 Identities = 264/294 (89%), Positives = 280/294 (95%)
 Frame = +3

Query: 51  MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
           MNFSEVFKLS+LLCKFSPDGKYLASCVQYRLVVRD +TLQILQLYTCLDQIQHIEWSADS
Sbjct: 1   MNFSEVFKLSSLLCKFSPDGKYLASCVQYRLVVRDVNTLQILQLYTCLDQIQHIEWSADS 60

Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
           LFILCA+Y+RGLVQVWSLEQP+WHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61  LFILCAMYKRGLVQVWSLEQPEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120

Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
           LCTKSVSYIKYPKAC QGITFTRDGRY+ALAERRDC+D+VSIFVCSDWQLLRHF+TDTQD
Sbjct: 121 LCTKSVSYIKYPKACLQGITFTRDGRYMALAERRDCKDYVSIFVCSDWQLLRHFDTDTQD 180

Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
           L GIEWAPNGCVLA WDTCLEYKILLYSLDGRLLSTY AYEWSLGIKSVAWSPSSQFLAV
Sbjct: 181 LTGIEWAPNGCVLAVWDTCLEYKILLYSLDGRLLSTYSAYEWSLGIKSVAWSPSSQFLAV 240

Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQP 932
           GSYDGKVR+LNHVTWK++ E GHPAA++ P  VVY+EAEKSP L LG L+FP P
Sbjct: 241 GSYDGKVRILNHVTWKMITEFGHPAAINDPKIVVYKEAEKSPQLGLGCLSFPPP 294


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,402,837
Number of extensions: 1423045
Number of successful extensions: 9605
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9092
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008878
         (953 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         311   4e-82

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  311 bits (157), Expect = 4e-82
 Identities = 157/157 (100%)
 Strand = Plus / Plus

                                                                            
Query: 119      ggcctcctgcgtccagtaccggttggtggttcgagatgccagcacccttcagatcctcca 178
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59875823 ggcctcctgcgtccagtaccggttggtggttcgagatgccagcacccttcagatcctcca 59875882

                                                                            
Query: 179      gctgtacacgtgcctggaccagatccagcacatcgagtggtcggccgactcgctcttcat 238
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59875883 gctgtacacgtgcctggaccagatccagcacatcgagtggtcggccgactcgctcttcat 59875942

                                                     
Query: 239      cctgtgcgccctctacaggcgggggctggtgcaggtg 275
                |||||||||||||||||||||||||||||||||||||
Sbjct: 59875943 cctgtgcgccctctacaggcgggggctggtgcaggtg 59875979



 Score =  278 bits (140), Expect = 5e-72
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                            
Query: 652      agtacaagatcctgctctactccctggacggccggctgctgtccacctactgcgcctacg 711
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59881247 agtacaagatcctgctctactccctggacggccggctgctgtccacctactgcgcctacg 59881306

                                                                            
Query: 712      agtggtccctgggcatcaagtcggtggcttggagccccagcagtcagttcctggcagtcg 771
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59881307 agtggtccctgggcatcaagtcggtggcttggagccccagcagtcagttcctggcagtcg 59881366

                                    
Query: 772      ggagctacgacggaaaggtg 791
                ||||||||||||||||||||
Sbjct: 59881367 ggagctacgacggaaaggtg 59881386



 Score =  238 bits (120), Expect = 5e-60
 Identities = 120/120 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        gaaggggcggttgcggcggggctccgcgggcccgggatccagcggctgccatgaacttct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59872092 gaaggggcggttgcggcggggctccgcgggcccgggatccagcggctgccatgaacttct 59872151

                                                                            
Query: 61       cggaggtgttcaagctctccaacctgctctgcaagttctcccccgacggcaagtacctgg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59872152 cggaggtgttcaagctctccaacctgctctgcaagttctcccccgacggcaagtacctgg 59872211



 Score =  238 bits (120), Expect = 5e-60
 Identities = 120/120 (100%)
 Strand = Plus / Plus

                                                                            
Query: 270      caggtgtggtctttggagcagccagactggcactgcaaaatagatgagggctctgcaggg 329
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59876365 caggtgtggtctttggagcagccagactggcactgcaaaatagatgagggctctgcaggg 59876424

                                                                            
Query: 330      ctggtggcttcctgctggagcccagacgggcggcacatcctcaacacaacagagttccac 389
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59876425 ctggtggcttcctgctggagcccagacgggcggcacatcctcaacacaacagagttccac 59876484



 Score =  208 bits (105), Expect = 4e-51
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                            
Query: 462      ggaataacctttaccagggacggccgctacctggccttggcggagagacgggactgcagg 521
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59880215 ggaataacctttaccagggacggccgctacctggccttggcggagagacgggactgcagg 59880274

                                                             
Query: 522      gaccacgtgagcatctttgtctgcagcgactggcagctcctgcgg 566
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59880275 gaccacgtgagcatctttgtctgcagcgactggcagctcctgcgg 59880319



 Score =  174 bits (88), Expect = 6e-41
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                            
Query: 566      gcactttgagacggacacacaggacctggcagggatcgagtgggcccccaacggctgcgt 625
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59880863 gcactttgagacggacacacaggacctggcagggatcgagtgggcccccaacggctgcgt 59880922

                                            
Query: 626      gctggcggcctgggacacctgcctggag 653
                ||||||||||||||||||||||||||||
Sbjct: 59880923 gctggcggcctgggacacctgcctggag 59880950



 Score =  163 bits (82), Expect = 2e-37
 Identities = 82/82 (100%)
 Strand = Plus / Plus

                                                                            
Query: 787      aggtgcgcgttctcaaccacgtgacgtggaagctgctcgcagagctggggcatcctgcgg 846
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59881453 aggtgcgcgttctcaaccacgtgacgtggaagctgctcgcagagctggggcatcctgcgg 59881512

                                      
Query: 847      ctgtcagcagccccagcacagt 868
                ||||||||||||||||||||||
Sbjct: 59881513 ctgtcagcagccccagcacagt 59881534



 Score =  147 bits (74), Expect = 1e-32
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                            
Query: 390      ctgcggataactgtctggtccttatgcacgaagtctgtgtcctacatcaaataccctaaa 449
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59878853 ctgcggataactgtctggtccttatgcacgaagtctgtgtcctacatcaaataccctaaa 59878912

                              
Query: 450      gcttgtcagcaggg 463
                ||||||||||||||
Sbjct: 59878913 gcttgtcagcaggg 59878926



 Score =  143 bits (72), Expect = 2e-31
 Identities = 85/88 (96%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                            
Query: 867      gtggtgtacagggaggcagagaaaagcccgccactggcgctgggccgcctggccttccct 926
                ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 59882191 gtggtgtacagggaggcagagaagagcccgccactggcgctgggccgcctggccttccct 59882250

                                            
Query: 927      -caaccagagccccggccggtccccggg 953
                 || ||||||||||||||||||||||||
Sbjct: 59882251 ccacccagagccccggccggtccccggg 59882278


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,377,095
Number of extensions: 149
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 9
Length of query: 953
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 932
Effective length of database: 2,808,413,156
Effective search space: 2617441061392
Effective search space used: 2617441061392
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)