Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008878
(953 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179935.1| WD repeat-containing protein 8 [Bos taurus]. 568 e-162
Alignment gi|XP_002694166.1| PREDICTED: WD repeat domain 8 [Bos taurus]. 568 e-162
Alignment gi|XP_001790573.1| PREDICTED: hypothetical protein, partial [Bo... 240 1e-63
>ref|NP_001179935.1| WD repeat-containing protein 8 [Bos taurus].
Length = 458
Score = 568 bits (1464), Expect = e-162
Identities = 264/294 (89%), Positives = 282/294 (95%)
Frame = +3
Query: 51 MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
MNFSEVFKLS+LLCKFSPDGKYLASC+QYRLVVRDA+TLQILQLYTCLDQIQH+EWSADS
Sbjct: 1 MNFSEVFKLSSLLCKFSPDGKYLASCIQYRLVVRDANTLQILQLYTCLDQIQHLEWSADS 60
Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
LFILCALY+RGLVQVWSLEQP+WHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61 LFILCALYKRGLVQVWSLEQPEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120
Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRD+VSIFVCSDWQLLRHF+TDTQD
Sbjct: 121 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDYVSIFVCSDWQLLRHFDTDTQD 180
Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
LAGIEWAPNGCVLA WD+CLEYK+LLYSLDGRLLS +CAYEWSLGIKSVAWSPSSQFLA+
Sbjct: 181 LAGIEWAPNGCVLAVWDSCLEYKVLLYSLDGRLLSAFCAYEWSLGIKSVAWSPSSQFLAI 240
Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQP 932
GSYDGKVR+LNHVTWK++ E GHPA V++P VVY+EAEKSPP LG LA P P
Sbjct: 241 GSYDGKVRILNHVTWKMITEFGHPATVNNPKIVVYKEAEKSPP--LGHLACPPP 292
>ref|XP_002694166.1| PREDICTED: WD repeat domain 8 [Bos taurus].
Length = 458
Score = 568 bits (1464), Expect = e-162
Identities = 264/294 (89%), Positives = 282/294 (95%)
Frame = +3
Query: 51 MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
MNFSEVFKLS+LLCKFSPDGKYLASC+QYRLVVRDA+TLQILQLYTCLDQIQH+EWSADS
Sbjct: 1 MNFSEVFKLSSLLCKFSPDGKYLASCIQYRLVVRDANTLQILQLYTCLDQIQHLEWSADS 60
Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
LFILCALY+RGLVQVWSLEQP+WHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61 LFILCALYKRGLVQVWSLEQPEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120
Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRD+VSIFVCSDWQLLRHF+TDTQD
Sbjct: 121 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDYVSIFVCSDWQLLRHFDTDTQD 180
Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
LAGIEWAPNGCVLA WD+CLEYK+LLYSLDGRLLS +CAYEWSLGIKSVAWSPSSQFLA+
Sbjct: 181 LAGIEWAPNGCVLAVWDSCLEYKVLLYSLDGRLLSAFCAYEWSLGIKSVAWSPSSQFLAI 240
Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQP 932
GSYDGKVR+LNHVTWK++ E GHPA V++P VVY+EAEKSPP LG LA P P
Sbjct: 241 GSYDGKVRILNHVTWKMITEFGHPATVNNPKIVVYKEAEKSPP--LGHLACPPP 292
>ref|XP_001790573.1| PREDICTED: hypothetical protein, partial [Bos taurus].
Length = 296
Score = 240 bits (613), Expect = 1e-63
Identities = 109/132 (82%), Positives = 120/132 (90%)
Frame = +3
Query: 537 FVCSDWQLLRHFETDTQDLAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEW 716
FVCSDWQLLRHF+TDTQDLAGIEWAPNGCVLA WD+CLEYK+LLYSLDGRLLS +CAYEW
Sbjct: 1 FVCSDWQLLRHFDTDTQDLAGIEWAPNGCVLAVWDSCLEYKVLLYSLDGRLLSAFCAYEW 60
Query: 717 SLGIKSVAWSPSSQFLAVGSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSP 896
SLGIKSVAWSPSSQFLA+GSYDGKVR+LNHVTWK++ E GHPA V++P VVY+EAEKSP
Sbjct: 61 SLGIKSVAWSPSSQFLAIGSYDGKVRILNHVTWKMITEFGHPATVNNPKIVVYKEAEKSP 120
Query: 897 PLALGRLAFPQP 932
P LG LA P P
Sbjct: 121 P--LGHLACPPP 130
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,744,672
Number of extensions: 1431805
Number of successful extensions: 10198
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9560
Number of HSP's successfully gapped: 3
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008878
(953 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536722.2| PREDICTED: similar to WD-repeat protein 8 [Cani... 581 e-166
>ref|XP_536722.2| PREDICTED: similar to WD-repeat protein 8 [Canis familiaris].
Length = 460
Score = 581 bits (1498), Expect = e-166
Identities = 267/300 (89%), Positives = 286/300 (95%)
Frame = +3
Query: 51 MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRD +TLQILQLYTCLDQIQHIEWSADS
Sbjct: 1 MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDVNTLQILQLYTCLDQIQHIEWSADS 60
Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
LFILCA+Y+RGLVQVWSLEQP+WHC+IDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61 LFILCAMYKRGLVQVWSLEQPEWHCRIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120
Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
LCTKSVSYIKYPKACQQGITFTRDGRY+ALAERRDC+DHVS+FVCSDWQLLRHF+T+TQD
Sbjct: 121 LCTKSVSYIKYPKACQQGITFTRDGRYMALAERRDCKDHVSVFVCSDWQLLRHFDTETQD 180
Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
LAGIEWAPNGCVLA WDTCLEYK+LLYSLDGRLLS YCAYEWSLG+KSVAWSPSSQFLAV
Sbjct: 181 LAGIEWAPNGCVLAVWDTCLEYKVLLYSLDGRLLSAYCAYEWSLGVKSVAWSPSSQFLAV 240
Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQPEPRPVP 950
GSYDGKVR+LNHVTWK++ E GHPA V++P VVY+EAEK+P LALGRLAFP P P P
Sbjct: 241 GSYDGKVRILNHVTWKMITEFGHPATVNNPKIVVYKEAEKNPRLALGRLAFPPPRAAPGP 300
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,403,360
Number of extensions: 1461899
Number of successful extensions: 10732
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10239
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008878
(953 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127564.1| PREDICTED: WD repeat-containing protein 8-li... 613 e-176
>ref|XP_003127564.1| PREDICTED: WD repeat-containing protein 8-like [Sus scrofa].
Length = 460
Score = 613 bits (1580), Expect = e-176
Identities = 293/294 (99%), Positives = 293/294 (99%)
Frame = +3
Query: 51 MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS
Sbjct: 1 MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 60
Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120
Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD
Sbjct: 121 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 180
Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV
Sbjct: 181 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 240
Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQP 932
GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFP P
Sbjct: 241 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPPP 294
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,656,273
Number of extensions: 927880
Number of successful extensions: 6510
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6152
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008878
(953 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067474.2| WD repeat domain 8 [Mus musculus]. 572 e-163
>ref|NP_067474.2| WD repeat domain 8 [Mus musculus].
Length = 462
Score = 572 bits (1474), Expect = e-163
Identities = 263/294 (89%), Positives = 281/294 (95%)
Frame = +3
Query: 51 MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
MNFSE FKLS LLC+FSPDGKYLASCVQYRLV+RD +TLQILQLYTCLDQIQHIEWSADS
Sbjct: 1 MNFSESFKLSGLLCRFSPDGKYLASCVQYRLVIRDVTTLQILQLYTCLDQIQHIEWSADS 60
Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
LFILCA+YRRGLVQVWSLEQP+WHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61 LFILCAMYRRGLVQVWSLEQPEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120
Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
LCTKSVSYIKYPKACQQG+TFTRDGRYLALAERRDCRD+VSIFVCSDWQLLRHF+TDTQD
Sbjct: 121 LCTKSVSYIKYPKACQQGLTFTRDGRYLALAERRDCRDYVSIFVCSDWQLLRHFDTDTQD 180
Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
L GIEWAPNGCVLAAWDTCLEYK+LLYSLDGRLLS YCAYEWSLGIKSVAWSPSSQFLA+
Sbjct: 181 LTGIEWAPNGCVLAAWDTCLEYKVLLYSLDGRLLSAYCAYEWSLGIKSVAWSPSSQFLAI 240
Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQP 932
GSYDGKVR+LNHVTWK++ E GHPA +++P TVVY+EAEKSP L LG L+FP P
Sbjct: 241 GSYDGKVRLLNHVTWKMITEFGHPATINNPKTVVYKEAEKSPLLGLGHLSFPPP 294
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,429,377
Number of extensions: 1166616
Number of successful extensions: 7500
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7119
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008878
(953 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060288.3| WD repeat-containing protein WRAP73 [Homo sapie... 568 e-162
>ref|NP_060288.3| WD repeat-containing protein WRAP73 [Homo sapiens].
Length = 460
Score = 568 bits (1463), Expect = e-162
Identities = 264/294 (89%), Positives = 280/294 (95%)
Frame = +3
Query: 51 MNFSEVFKLSNLLCKFSPDGKYLASCVQYRLVVRDASTLQILQLYTCLDQIQHIEWSADS 230
MNFSEVFKLS+LLCKFSPDGKYLASCVQYRLVVRD +TLQILQLYTCLDQIQHIEWSADS
Sbjct: 1 MNFSEVFKLSSLLCKFSPDGKYLASCVQYRLVVRDVNTLQILQLYTCLDQIQHIEWSADS 60
Query: 231 LFILCALYRRGLVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 410
LFILCA+Y+RGLVQVWSLEQP+WHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS
Sbjct: 61 LFILCAMYKRGLVQVWSLEQPEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWS 120
Query: 411 LCTKSVSYIKYPKACQQGITFTRDGRYLALAERRDCRDHVSIFVCSDWQLLRHFETDTQD 590
LCTKSVSYIKYPKAC QGITFTRDGRY+ALAERRDC+D+VSIFVCSDWQLLRHF+TDTQD
Sbjct: 121 LCTKSVSYIKYPKACLQGITFTRDGRYMALAERRDCKDYVSIFVCSDWQLLRHFDTDTQD 180
Query: 591 LAGIEWAPNGCVLAAWDTCLEYKILLYSLDGRLLSTYCAYEWSLGIKSVAWSPSSQFLAV 770
L GIEWAPNGCVLA WDTCLEYKILLYSLDGRLLSTY AYEWSLGIKSVAWSPSSQFLAV
Sbjct: 181 LTGIEWAPNGCVLAVWDTCLEYKILLYSLDGRLLSTYSAYEWSLGIKSVAWSPSSQFLAV 240
Query: 771 GSYDGKVRVLNHVTWKLLAELGHPAAVSSPSTVVYREAEKSPPLALGRLAFPQP 932
GSYDGKVR+LNHVTWK++ E GHPAA++ P VVY+EAEKSP L LG L+FP P
Sbjct: 241 GSYDGKVRILNHVTWKMITEFGHPAAINDPKIVVYKEAEKSPQLGLGCLSFPPP 294
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,402,837
Number of extensions: 1423045
Number of successful extensions: 9605
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9092
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008878
(953 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 311 4e-82
>Sscrofa_Chr06
|| Length = 157765593
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 119 ggcctcctgcgtccagtaccggttggtggttcgagatgccagcacccttcagatcctcca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59875823 ggcctcctgcgtccagtaccggttggtggttcgagatgccagcacccttcagatcctcca 59875882
Query: 179 gctgtacacgtgcctggaccagatccagcacatcgagtggtcggccgactcgctcttcat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59875883 gctgtacacgtgcctggaccagatccagcacatcgagtggtcggccgactcgctcttcat 59875942
Query: 239 cctgtgcgccctctacaggcgggggctggtgcaggtg 275
|||||||||||||||||||||||||||||||||||||
Sbjct: 59875943 cctgtgcgccctctacaggcgggggctggtgcaggtg 59875979
Score = 278 bits (140), Expect = 5e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 652 agtacaagatcctgctctactccctggacggccggctgctgtccacctactgcgcctacg 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59881247 agtacaagatcctgctctactccctggacggccggctgctgtccacctactgcgcctacg 59881306
Query: 712 agtggtccctgggcatcaagtcggtggcttggagccccagcagtcagttcctggcagtcg 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59881307 agtggtccctgggcatcaagtcggtggcttggagccccagcagtcagttcctggcagtcg 59881366
Query: 772 ggagctacgacggaaaggtg 791
||||||||||||||||||||
Sbjct: 59881367 ggagctacgacggaaaggtg 59881386
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 gaaggggcggttgcggcggggctccgcgggcccgggatccagcggctgccatgaacttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59872092 gaaggggcggttgcggcggggctccgcgggcccgggatccagcggctgccatgaacttct 59872151
Query: 61 cggaggtgttcaagctctccaacctgctctgcaagttctcccccgacggcaagtacctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59872152 cggaggtgttcaagctctccaacctgctctgcaagttctcccccgacggcaagtacctgg 59872211
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 270 caggtgtggtctttggagcagccagactggcactgcaaaatagatgagggctctgcaggg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59876365 caggtgtggtctttggagcagccagactggcactgcaaaatagatgagggctctgcaggg 59876424
Query: 330 ctggtggcttcctgctggagcccagacgggcggcacatcctcaacacaacagagttccac 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59876425 ctggtggcttcctgctggagcccagacgggcggcacatcctcaacacaacagagttccac 59876484
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 462 ggaataacctttaccagggacggccgctacctggccttggcggagagacgggactgcagg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59880215 ggaataacctttaccagggacggccgctacctggccttggcggagagacgggactgcagg 59880274
Query: 522 gaccacgtgagcatctttgtctgcagcgactggcagctcctgcgg 566
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59880275 gaccacgtgagcatctttgtctgcagcgactggcagctcctgcgg 59880319
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 566 gcactttgagacggacacacaggacctggcagggatcgagtgggcccccaacggctgcgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59880863 gcactttgagacggacacacaggacctggcagggatcgagtgggcccccaacggctgcgt 59880922
Query: 626 gctggcggcctgggacacctgcctggag 653
||||||||||||||||||||||||||||
Sbjct: 59880923 gctggcggcctgggacacctgcctggag 59880950
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 787 aggtgcgcgttctcaaccacgtgacgtggaagctgctcgcagagctggggcatcctgcgg 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59881453 aggtgcgcgttctcaaccacgtgacgtggaagctgctcgcagagctggggcatcctgcgg 59881512
Query: 847 ctgtcagcagccccagcacagt 868
||||||||||||||||||||||
Sbjct: 59881513 ctgtcagcagccccagcacagt 59881534
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 390 ctgcggataactgtctggtccttatgcacgaagtctgtgtcctacatcaaataccctaaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59878853 ctgcggataactgtctggtccttatgcacgaagtctgtgtcctacatcaaataccctaaa 59878912
Query: 450 gcttgtcagcaggg 463
||||||||||||||
Sbjct: 59878913 gcttgtcagcaggg 59878926
Score = 143 bits (72), Expect = 2e-31
Identities = 85/88 (96%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 867 gtggtgtacagggaggcagagaaaagcccgccactggcgctgggccgcctggccttccct 926
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 59882191 gtggtgtacagggaggcagagaagagcccgccactggcgctgggccgcctggccttccct 59882250
Query: 927 -caaccagagccccggccggtccccggg 953
|| ||||||||||||||||||||||||
Sbjct: 59882251 ccacccagagccccggccggtccccggg 59882278
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,377,095
Number of extensions: 149
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 9
Length of query: 953
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 932
Effective length of database: 2,808,413,156
Effective search space: 2617441061392
Effective search space used: 2617441061392
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)