Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008880
(1225 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192752.1| major facilitator superfamily domain-contain... 447 e-136
Alignment gi|XP_002694401.1| PREDICTED: hypothetical protein [Bos taurus]. 447 e-136
Alignment gi|XP_002691232.1| PREDICTED: major facilitator superfamily dom... 50 3e-06
Alignment gi|XP_591971.3| PREDICTED: major facilitator superfamily domain... 50 3e-06
>ref|NP_001192752.1| major facilitator superfamily domain-containing protein 8 [Bos
taurus].
Length = 519
Score = 447 bits (1151), Expect(2) = e-136
Identities = 228/268 (85%), Positives = 234/268 (87%)
Frame = +1
Query: 421 IDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHL 600
IDQTADASFLGWVIA++SLGQM ASP+FGLWSNYRPRKEPLIVSIFISVAANCLYAYVH+
Sbjct: 68 IDQTADASFLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHV 127
Query: 601 PPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPVF 780
P SHNKYYML ARGLVGFGAGNVAVIRSYIAGATSLQERTS+MANTSACQALGFILGPVF
Sbjct: 128 PASHNKYYMLAARGLVGFGAGNVAVIRSYIAGATSLQERTSSMANTSACQALGFILGPVF 187
Query: 781 QTCFALIGEKGVTWDTIKLQINMYTAPVLLSVFXXXXXXXXXXXXXREHRVDDSGRQCKN 960
QTCFALIGEKGVTWD IKLQINMYTAPVLL F REHRVDDSGRQCKN
Sbjct: 188 QTCFALIGEKGVTWDVIKLQINMYTAPVLLGAFLGILNIILILTILREHRVDDSGRQCKN 247
Query: 961 INFEEVSTDEVQVPQGNIDQVAVVATNXXXXXXXXXXXXXETIVTPLTMDMYAWTREQAV 1140
INFEE STDEVQVPQ NIDQVAVVATN ETIVTPLTMDMYAWTREQAV
Sbjct: 248 INFEEASTDEVQVPQENIDQVAVVATNILFFVILFIFALFETIVTPLTMDMYAWTREQAV 307
Query: 1141 LYDGIILAALGVEAVIIFMGIKLVSKKI 1224
LYDGIILAALGVEAVIIFMGIKL+SKKI
Sbjct: 308 LYDGIILAALGVEAVIIFMGIKLLSKKI 335
Score = 58.2 bits (139), Expect(2) = e-136
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +3
Query: 336 DIIETEEHYKSRWRSIRILYFTMFLSSV 419
DIIETEEHYKSRWRSIRILY TMFLSSV
Sbjct: 25 DIIETEEHYKSRWRSIRILYLTMFLSSV 52
>ref|XP_002694401.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 519
Score = 447 bits (1151), Expect(2) = e-136
Identities = 228/268 (85%), Positives = 234/268 (87%)
Frame = +1
Query: 421 IDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHL 600
IDQTADASFLGWVIA++SLGQM ASP+FGLWSNYRPRKEPLIVSIFISVAANCLYAYVH+
Sbjct: 68 IDQTADASFLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHV 127
Query: 601 PPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPVF 780
P SHNKYYML ARGLVGFGAGNVAVIRSYIAGATSLQERTS+MANTSACQALGFILGPVF
Sbjct: 128 PASHNKYYMLAARGLVGFGAGNVAVIRSYIAGATSLQERTSSMANTSACQALGFILGPVF 187
Query: 781 QTCFALIGEKGVTWDTIKLQINMYTAPVLLSVFXXXXXXXXXXXXXREHRVDDSGRQCKN 960
QTCFALIGEKGVTWD IKLQINMYTAPVLL F REHRVDDSGRQCKN
Sbjct: 188 QTCFALIGEKGVTWDVIKLQINMYTAPVLLGAFLGILNIILILTILREHRVDDSGRQCKN 247
Query: 961 INFEEVSTDEVQVPQGNIDQVAVVATNXXXXXXXXXXXXXETIVTPLTMDMYAWTREQAV 1140
INFEE STDEVQVPQ NIDQVAVVATN ETIVTPLTMDMYAWTREQAV
Sbjct: 248 INFEEASTDEVQVPQENIDQVAVVATNILFFVILFIFALFETIVTPLTMDMYAWTREQAV 307
Query: 1141 LYDGIILAALGVEAVIIFMGIKLVSKKI 1224
LYDGIILAALGVEAVIIFMGIKL+SKKI
Sbjct: 308 LYDGIILAALGVEAVIIFMGIKLLSKKI 335
Score = 58.2 bits (139), Expect(2) = e-136
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +3
Query: 336 DIIETEEHYKSRWRSIRILYFTMFLSSV 419
DIIETEEHYKSRWRSIRILY TMFLSSV
Sbjct: 25 DIIETEEHYKSRWRSIRILYLTMFLSSV 52
>ref|XP_002691232.1| PREDICTED: major facilitator superfamily domain containing 10-like
[Bos taurus].
Length = 474
Score = 50.4 bits (119), Expect = 3e-06
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Frame = +1
Query: 376 DLLGFCILLCFSAV*IDQT-ADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVS 552
DL G +++ +V + A + G V +++ + Q+ +S L G WS+ R+ L+V
Sbjct: 48 DLFGVSMVVPLLSVHVKSLGASPTVAGIVGSSYGILQLFSSTLVGCWSDVVGRRSSLLVC 107
Query: 553 IFISVAANCLYAYVHLPPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMA 732
I S Y+ L S N + +AR G +++ R+ +A + +ER +
Sbjct: 108 ILCSALG-----YLLLGASTNVFLFTLARVPAGIFKHTLSISRALLADLVTEEERPVVLG 162
Query: 733 NTSACQALGFILGPV 777
+ ++GFILGPV
Sbjct: 163 QFNTASSMGFILGPV 177
>ref|XP_591971.3| PREDICTED: major facilitator superfamily domain containing 10-like
[Bos taurus].
Length = 474
Score = 50.4 bits (119), Expect = 3e-06
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Frame = +1
Query: 376 DLLGFCILLCFSAV*IDQT-ADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVS 552
DL G +++ +V + A + G V +++ + Q+ +S L G WS+ R+ L+V
Sbjct: 48 DLFGVSMVVPLLSVHVKSLGASPTVAGIVGSSYGILQLFSSTLVGCWSDVVGRRSSLLVC 107
Query: 553 IFISVAANCLYAYVHLPPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMA 732
I S Y+ L S N + +AR G +++ R+ +A + +ER +
Sbjct: 108 ILCSALG-----YLLLGASTNVFLFTLARVPAGIFKHTLSISRALLADLVTEEERPVVLG 162
Query: 733 NTSACQALGFILGPV 777
+ ++GFILGPV
Sbjct: 163 QFNTASSMGFILGPV 177
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,541,724
Number of extensions: 1032549
Number of successful extensions: 1845
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1842
Number of HSP's successfully gapped: 6
Length of query: 408
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,207,134
Effective search space: 4304761602
Effective search space used: 4304761602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008880
(1225 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533294.2| PREDICTED: similar to CG8596-PA [Canis familiar... 324 9e-89
>ref|XP_533294.2| PREDICTED: similar to CG8596-PA [Canis familiaris].
Length = 514
Score = 324 bits (831), Expect = 9e-89
Identities = 188/297 (63%), Positives = 207/297 (69%), Gaps = 4/297 (1%)
Frame = +1
Query: 346 KLRSIIRADGDLLGFCILLCFSAV*IDQTADASFLGWVIATFSLGQMAASPLFGLWSNYR 525
KL +I D + I+ + IDQTADASFLGWVIA+FSLGQM ASP+FGLWSNYR
Sbjct: 19 KLNKLITDD-----YQIIYIHKGLKIDQTADASFLGWVIASFSLGQMVASPVFGLWSNYR 73
Query: 526 PRKEPLIVSIFISVAANCLYAYVHLPPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATS 705
PRKEPLI+S+ ISVAANCLYAYVH+P SHNKYYMLVARGLVGFGAGNVAVIRSYIAGATS
Sbjct: 74 PRKEPLIISLSISVAANCLYAYVHVPASHNKYYMLVARGLVGFGAGNVAVIRSYIAGATS 133
Query: 706 LQERTSAMANTSACQALGFILGPVFQTCFALIGEKGVTW----DTIKLQINMYTAPVLLS 873
LQERTS+MANTSACQALGFILGP + + W D++K+ I VLL+
Sbjct: 134 LQERTSSMANTSACQALGFILGP-----------ENIMWMTQDDSVKMLI---LKKVLLT 179
Query: 874 VFXXXXXXXXXXXXXREHRVDDSGRQCKNINFEEVSTDEVQVPQGNIDQVAVVATNXXXX 1053
D + STDEVQV QGNIDQVAVVATN
Sbjct: 180 CLTNYCNIIKMYLMILFAIYLDFASGDSTV----ASTDEVQVLQGNIDQVAVVATNIVFF 235
Query: 1054 XXXXXXXXXETIVTPLTMDMYAWTREQAVLYDGIILAALGVEAVIIFMGIKLVSKKI 1224
ETIVTPLTMDMYAWTREQAVLYDGIILAALGVEA+IIFMGIKL+SKKI
Sbjct: 236 VILFIFALFETIVTPLTMDMYAWTREQAVLYDGIILAALGVEALIIFMGIKLLSKKI 292
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,127,864
Number of extensions: 872886
Number of successful extensions: 1818
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1818
Number of HSP's successfully gapped: 3
Length of query: 408
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 303
Effective length of database: 15,374,224
Effective search space: 4658389872
Effective search space used: 4658389872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008880
(1225 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129247.1| PREDICTED: major facilitator superfamily dom... 468 e-144
Alignment gi|XP_003129250.1| PREDICTED: major facilitator superfamily dom... 80 2e-15
>ref|XP_003129247.1| PREDICTED: major facilitator superfamily domain-containing protein 8
[Sus scrofa].
Length = 518
Score = 468 bits (1204), Expect(2) = e-144
Identities = 241/268 (89%), Positives = 241/268 (89%)
Frame = +1
Query: 421 IDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHL 600
IDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHL
Sbjct: 67 IDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHL 126
Query: 601 PPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPVF 780
PPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPVF
Sbjct: 127 PPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPVF 186
Query: 781 QTCFALIGEKGVTWDTIKLQINMYTAPVLLSVFXXXXXXXXXXXXXREHRVDDSGRQCKN 960
QTCFALIGEKGVTWDTIKLQINMYTAPVLLSVF REHRVDDSGRQCKN
Sbjct: 187 QTCFALIGEKGVTWDTIKLQINMYTAPVLLSVFLGILNIILILTILREHRVDDSGRQCKN 246
Query: 961 INFEEVSTDEVQVPQGNIDQVAVVATNXXXXXXXXXXXXXETIVTPLTMDMYAWTREQAV 1140
INFEEVSTDEVQVPQGNIDQVAVVATN ETIVTPLTMDMYAWTREQAV
Sbjct: 247 INFEEVSTDEVQVPQGNIDQVAVVATNVLFFVVLFIFALFETIVTPLTMDMYAWTREQAV 306
Query: 1141 LYDGIILAALGVEAVIIFMGIKLVSKKI 1224
LYDGIILAALGVEAVIIFMGIKLVSK I
Sbjct: 307 LYDGIILAALGVEAVIIFMGIKLVSKTI 334
Score = 62.4 bits (150), Expect(2) = e-144
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 333 GDIIETEEHYKSRWRSIRILYFTMFLSSV 419
GD+IETEEHYKSRWRSIRILYFTMFLSSV
Sbjct: 23 GDVIETEEHYKSRWRSIRILYFTMFLSSV 51
>ref|XP_003129250.1| PREDICTED: major facilitator superfamily domain-containing protein
8-like [Sus scrofa].
Length = 224
Score = 80.1 bits (196), Expect = 2e-15
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 1105 MDMYAWTREQAVLYDGIILAALGVEAVIIFMGIKLVSKKI 1224
MDMYAWTREQAVLYDGIILAALGVEAVIIFMGIKLVSKKI
Sbjct: 1 MDMYAWTREQAVLYDGIILAALGVEAVIIFMGIKLVSKKI 40
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,802,087
Number of extensions: 945702
Number of successful extensions: 1141
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 3
Length of query: 408
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,829,335
Effective search space: 2710605845
Effective search space used: 2710605845
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008880
(1225 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082416.2| major facilitator superfamily domain-containing... 423 e-127
>ref|NP_082416.2| major facilitator superfamily domain-containing protein 8 [Mus
musculus].
Length = 519
Score = 423 bits (1088), Expect(2) = e-127
Identities = 207/268 (77%), Positives = 231/268 (86%)
Frame = +1
Query: 421 IDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHL 600
IDQTADASFLGWVIA++SLGQM ASPLFGLWSNYRPRKEPLIVSI ISVAANCLYAYVH+
Sbjct: 68 IDQTADASFLGWVIASYSLGQMVASPLFGLWSNYRPRKEPLIVSISISVAANCLYAYVHV 127
Query: 601 PPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPVF 780
P +HNKYYML+ARGLVGFGAGNVAV+RSYIAGATSLQERT+AMANTS CQALGFILGPVF
Sbjct: 128 PAAHNKYYMLIARGLVGFGAGNVAVVRSYIAGATSLQERTNAMANTSTCQALGFILGPVF 187
Query: 781 QTCFALIGEKGVTWDTIKLQINMYTAPVLLSVFXXXXXXXXXXXXXREHRVDDSGRQCKN 960
QTCFALIGEKGVTWD IKLQ+NMYTAPVLL+ F REHRVDD GRQCK+
Sbjct: 188 QTCFALIGEKGVTWDIIKLQVNMYTAPVLLAAFLGILNIILILFILREHRVDDLGRQCKS 247
Query: 961 INFEEVSTDEVQVPQGNIDQVAVVATNXXXXXXXXXXXXXETIVTPLTMDMYAWTREQAV 1140
+NF+E +TDE Q+P+G+IDQVAVVATN ETI+TPLT+DMYAWT+EQAV
Sbjct: 248 VNFQEENTDEPQIPEGSIDQVAVVATNIVFFVVLFIFAVYETILTPLTLDMYAWTQEQAV 307
Query: 1141 LYDGIILAALGVEAVIIFMGIKLVSKKI 1224
LYDGI+L A GVEAV++FMG+KL+SKKI
Sbjct: 308 LYDGILLVAFGVEAVLVFMGVKLLSKKI 335
Score = 51.6 bits (122), Expect(2) = e-127
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +3
Query: 342 IETEEHYKSRWRSIRILYFTMFLSSV 419
IET+EHYKSRW+S+RILY TMFLSSV
Sbjct: 27 IETQEHYKSRWKSVRILYLTMFLSSV 52
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,036,760
Number of extensions: 737228
Number of successful extensions: 1486
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1484
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 304
Effective length of database: 12,493,815
Effective search space: 3798119760
Effective search space used: 3798119760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008880
(1225 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689991.1| major facilitator superfamily domain-containing... 420 e-128
>ref|NP_689991.1| major facilitator superfamily domain-containing protein 8 [Homo
sapiens].
Length = 518
Score = 420 bits (1079), Expect(2) = e-128
Identities = 208/268 (77%), Positives = 225/268 (83%)
Frame = +1
Query: 421 IDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHL 600
ID TAD SFLGWVIA++SLGQM ASP+FGLWSNYRPRKEPLIVSI ISVAANCLYAY+H+
Sbjct: 67 IDPTADTSFLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSILISVAANCLYAYLHI 126
Query: 601 PPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPVF 780
P SHNKYYMLVARGL+G GAGNVAV+RSY AGATSLQERTS+MAN S CQALGFILGPVF
Sbjct: 127 PASHNKYYMLVARGLLGIGAGNVAVVRSYTAGATSLQERTSSMANISMCQALGFILGPVF 186
Query: 781 QTCFALIGEKGVTWDTIKLQINMYTAPVLLSVFXXXXXXXXXXXXXREHRVDDSGRQCKN 960
QTCF +GEKGVTWD IKLQINMYT PVLLS F REHRVDDSGRQCK+
Sbjct: 187 QTCFTFLGEKGVTWDVIKLQINMYTTPVLLSAFLGILNIILILAILREHRVDDSGRQCKS 246
Query: 961 INFEEVSTDEVQVPQGNIDQVAVVATNXXXXXXXXXXXXXETIVTPLTMDMYAWTREQAV 1140
INFEE STDE QVPQGNIDQVAVVA N ETI+TPLTMDMYAWT+EQAV
Sbjct: 247 INFEEASTDEAQVPQGNIDQVAVVAINVLFFVTLFIFALFETIITPLTMDMYAWTQEQAV 306
Query: 1141 LYDGIILAALGVEAVIIFMGIKLVSKKI 1224
LY+GIILAALGVEAV+IF+G+KL+SKKI
Sbjct: 307 LYNGIILAALGVEAVVIFLGVKLLSKKI 334
Score = 57.4 bits (137), Expect(2) = e-128
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +3
Query: 336 DIIETEEHYKSRWRSIRILYFTMFLSSV 419
DI+ETEEHYKSRWRSIRILY TMFLSSV
Sbjct: 24 DILETEEHYKSRWRSIRILYLTMFLSSV 51
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,418,089
Number of extensions: 848595
Number of successful extensions: 1724
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1723
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,835,944
Effective search space: 4495291032
Effective search space used: 4495291032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008880
(1225 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 484 e-134
>Sscrofa_Chr08
|| Length = 148491826
Score = 484 bits (244), Expect = e-134
Identities = 244/244 (100%)
Strand = Plus / Plus
Query: 419 agattgatcagacagccgatgcaagttttttgggctgggttattgctacatttagccttg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103818985 agattgatcagacagccgatgcaagttttttgggctgggttattgctacatttagccttg 103819044
Query: 479 gccaaatggcagcttcacctttatttggtttgtggtctaattatagaccaagaaaagaac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103819045 gccaaatggcagcttcacctttatttggtttgtggtctaattatagaccaagaaaagaac 103819104
Query: 539 ctctcatcgtttccattttcatttcggtggcagccaactgcctctatgcctatgtccacc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103819105 ctctcatcgtttccattttcatttcggtggcagccaactgcctctatgcctatgtccacc 103819164
Query: 599 taccaccttctcataataaatactacatgttggttgctcgtggattagtgggatttggag 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103819165 taccaccttctcataataaatactacatgttggttgctcgtggattagtgggatttggag 103819224
Query: 659 cagg 662
||||
Sbjct: 103819225 cagg 103819228
Score = 291 bits (147), Expect = 5e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 774 agtttttcagacttgttttgcactcattggagaaaagggtgtgacatgggataccattaa 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103823526 agtttttcagacttgttttgcactcattggagaaaagggtgtgacatgggataccattaa 103823585
Query: 834 gctgcagataaacatgtatacagcacctgttttacttagtgtcttcctgggaatattaaa 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103823586 gctgcagataaacatgtatacagcacctgttttacttagtgtcttcctgggaatattaaa 103823645
Query: 894 tattattctgatccttactatattaag 920
|||||||||||||||||||||||||||
Sbjct: 103823646 tattattctgatccttactatattaag 103823672
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 4 ccttcgggcctcctggaatgggagagagtaggaggtgtcgcgagagttgacctctagctt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103792021 ccttcgggcctcctggaatgggagagagtaggaggtgtcgcgagagttgacctctagctt 103792080
Query: 64 tgtgggagctttaactatggcgagctttggggtcggggctgaacaggagcccctcttagg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103792081 tgtgggagctttaactatggcgagctttggggtcggggctgaacaggagcccctcttagg 103792140
Query: 124 agaccatacaccagga 139
||||||||||||||||
Sbjct: 103792141 agaccatacaccagga 103792156
Score = 258 bits (130), Expect = 6e-66
Identities = 133/134 (99%)
Strand = Plus / Plus
Query: 1086 catcgttactccattaacaatggatatgtatgcctggaccagagaacaagctgtattata 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103832863 catcgttactccattaacaatggatatgtatgcctggaccagagaacaagctgtattata 103832922
Query: 1146 tgatggaataatacttgctgctcttggagttgaagcagttattattttcatggggataaa 1205
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 103832923 tgatggaataatacttgctgctcttggagttgaggcagttattattttcatggggataaa 103832982
Query: 1206 attagtttccaaaa 1219
||||||||||||||
Sbjct: 103832983 attagtttccaaaa 103832996
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 660 aggaaatgtagctgttattagatcatatattgctggtgctacctctcttcaagaaagaac 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103820299 aggaaatgtagctgttattagatcatatattgctggtgctacctctcttcaagaaagaac 103820358
Query: 720 aagtgccatggcaaacacaagtgcatgccaagcattaggttttatcctaggtccag 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103820359 aagtgccatggcaaacacaagtgcatgccaagcattaggttttatcctaggtccag 103820414
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 975 agtaagtaccgatgaagttcaggttccccaaggaaatattgatcaagttgctgttgtggc 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103829113 agtaagtaccgatgaagttcaggttccccaaggaaatattgatcaagttgctgttgtggc 103829172
Query: 1035 caccaatgttctgtttttcgtggttctgtttatctttgccctttttgaaac 1085
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103829173 caccaatgttctgtttttcgtggttctgtttatctttgccctttttgaaac 103829223
Score = 168 bits (85), Expect = 5e-39
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 332 aggggatattatagaaactgaggagcattataagagccgatggagatctattaggattct 391
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103801474 aggggatgttatagaaactgaggagcattataagagccgatggagatctattaggattct 103801533
Query: 392 gtattttactatgtttctcagcagtgtag 420
|||||||||||||||||||||||||||||
Sbjct: 103801534 gtattttactatgtttctcagcagtgtag 103801562
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 916 ttaagagaacatcgtgtggatgactcaggacgacagtgtaaaaatattaattttgaagaa 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103824337 ttaagagaacatcgtgtggatgactcaggacgacagtgtaaaaatattaattttgaagaa 103824396
Query: 976 g 976
|
Sbjct: 103824397 g 103824397
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,540,101
Number of extensions: 235
Number of successful extensions: 235
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 8
Length of query: 1225
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1204
Effective length of database: 2,808,413,156
Effective search space: 3381329439824
Effective search space used: 3381329439824
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)