Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008884
(1227 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116065.1| deiodinase, iodothyronine, type I [Bos tauru... 441 e-124
Alignment gi|XP_001252655.1| PREDICTED: deiodinase, iodothyronine, type I... 236 4e-62
Alignment gi|NP_001010993.1| type III iodothyronine deiodinase [Bos tauru... 144 1e-34
Alignment gi|NP_001010992.1| type II iodothyronine deiodinase [Bos taurus]. 119 4e-27
>ref|NP_001116065.1| deiodinase, iodothyronine, type I [Bos taurus].
Length = 249
Score = 441 bits (1134), Expect = e-124
Identities = 208/249 (83%), Positives = 219/249 (87%)
Frame = +3
Query: 24 MELPLPGLWLKRLWVLFQVALHVAMGKVLMTLFPGRVKQDILAMSQKTGMAKNPHFSHEN 203
M LP PGLWLKRLWVLFQVALHVA+GKVL+TLFP RVKQ+ILAM +KTGM +NPHFSHEN
Sbjct: 1 MGLPSPGLWLKRLWVLFQVALHVAIGKVLLTLFPRRVKQNILAMGEKTGMTRNPHFSHEN 60
Query: 204 WIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSGQRCHIWDFMQGNRPLVLN 383
WIPTFFS QYFWF+LKVRWQRLED TE+GGLAPNCPVV LSG+RC IWDFMQGNRPLVLN
Sbjct: 61 WIPTFFSTQYFWFILKVRWQRLEDMTEQGGLAPNCPVVRLSGERCSIWDFMQGNRPLVLN 120
Query: 384 FGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNVDIKNHQNXXXX 563
FGSCT PSFIFKFDQFKRLIEDF S+ADFLIIYIEEAHASDGWAFKNNVDIKNH+N
Sbjct: 121 FGSCTUPSFIFKFDQFKRLIEDFGSVADFLIIYIEEAHASDGWAFKNNVDIKNHRNLQDR 180
Query: 564 XXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWNYHPEEV 743
SP CPVVVDTM NQSS YAALPERLYVLQ GR+LYKGKPGPWNYHPEEV
Sbjct: 181 LRAAHLLLDRSPPCPVVVDTMTNQSSSCYAALPERLYVLQEGRVLYKGKPGPWNYHPEEV 240
Query: 744 RAVLEKLHS 770
RAVLEKLHS
Sbjct: 241 RAVLEKLHS 249
>ref|XP_001252655.1| PREDICTED: deiodinase, iodothyronine, type I [Bos taurus].
Length = 164
Score = 236 bits (601), Expect = 4e-62
Identities = 114/140 (81%), Positives = 118/140 (84%)
Frame = +3
Query: 351 FMQGNRPLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNV 530
F+ GNRPLVLNFGSCT PSFIFKFDQFKRLIEDF S+ADFLIIYIEEAHASDGWAFKNNV
Sbjct: 25 FVLGNRPLVLNFGSCTXPSFIFKFDQFKRLIEDFGSVADFLIIYIEEAHASDGWAFKNNV 84
Query: 531 DIKNHQNXXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGK 710
DIKNH+N SP CPVVVDTM NQSS YAALPERLYVLQ GR+LYKGK
Sbjct: 85 DIKNHRNLQDRLRAAHLLLDRSPPCPVVVDTMTNQSSSCYAALPERLYVLQEGRVLYKGK 144
Query: 711 PGPWNYHPEEVRAVLEKLHS 770
PGPWNYHPEEVRAVLEKLHS
Sbjct: 145 PGPWNYHPEEVRAVLEKLHS 164
>ref|NP_001010993.1| type III iodothyronine deiodinase [Bos taurus].
Length = 278
Score = 144 bits (364), Expect = 1e-34
Identities = 82/192 (42%), Positives = 110/192 (57%), Gaps = 2/192 (1%)
Frame = +3
Query: 192 SHENWIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSG-QRCHIWDFMQGNR 368
S +N + T S + W K+ + + + EGG APN VV G Q HI D+ +GNR
Sbjct: 77 SDDNRLCTLASLRAVWHGQKLDFFK---QAHEGGPAPNSEVVLPDGFQNQHILDYARGNR 133
Query: 369 PLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNN-VDIKNH 545
PLVLNFGSCT P F+ + F+RL+ + DFLIIYIEEAH SDGW ++ I H
Sbjct: 134 PLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYSIPQH 193
Query: 546 QNXXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWN 725
++ +P+C +V+DTM N SS Y A ERLY++Q+G I+Y+G GP
Sbjct: 194 RSLEDRVSAARVLQQGAPECALVLDTMTNSSSSAYGAYFERLYIIQSGTIMYQGGRGPDG 253
Query: 726 YHPEEVRAVLEK 761
Y EVR LE+
Sbjct: 254 YQVSEVRTWLER 265
>ref|NP_001010992.1| type II iodothyronine deiodinase [Bos taurus].
Length = 269
Score = 119 bits (299), Expect = 4e-27
Identities = 63/155 (40%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Frame = +3
Query: 318 SLSGQRCHIWDFMQGNRPLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAH 497
++ G CH+ DF RPLV+NFGS T P F + F +L+E+FSS+ADFL++YI+EAH
Sbjct: 106 TVDGTECHLLDFASPERPLVVNFGSATUPPFTNQLPAFSKLVEEFSSVADFLLVYIDEAH 165
Query: 498 ASDGWAFKNN----VDIKNHQN---XXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAA 656
SDGWA + ++K H+N PQC VV D M N ++ Y
Sbjct: 166 PSDGWAVPGDSSLFFEVKKHRNQEDRCAAAHQLLERFSLPPQCRVVADRMDNNANVAYGV 225
Query: 657 LPERLYVLQAGRILYKGKPGPWNYHPEEVRAVLEK 761
ER+ ++Q +I Y G GP+ Y+ +EVR LEK
Sbjct: 226 AFERVCIVQRQKIAYLGGKGPFFYNLQEVRRWLEK 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,110,759
Number of extensions: 1263596
Number of successful extensions: 4056
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4036
Number of HSP's successfully gapped: 4
Length of query: 409
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,207,134
Effective search space: 4318968736
Effective search space used: 4318968736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008884
(1227 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007127.1| type I iodothyronine deiodinase [Canis lupus... 394 e-109
Alignment gi|XP_855606.1| PREDICTED: type I iodothyronine deiodinase [Can... 394 e-109
Alignment gi|NP_001157660.1| deiodinase, iodothyronine, type III [Canis l... 141 1e-33
Alignment gi|NP_001116117.1| type II iodothyronine deiodinase [Canis lupu... 120 3e-27
Alignment gi|XP_547984.2| PREDICTED: similar to Type III iodothyronine de... 54 4e-07
>ref|NP_001007127.1| type I iodothyronine deiodinase [Canis lupus familiaris].
Length = 244
Score = 394 bits (1012), Expect = e-109
Identities = 188/249 (75%), Positives = 207/249 (83%)
Frame = +3
Query: 24 MELPLPGLWLKRLWVLFQVALHVAMGKVLMTLFPGRVKQDILAMSQKTGMAKNPHFSHEN 203
M LP P LWL+RLWVL QVA+ VA+GKV + LFP RVKQ I+AM+ KNPHFS++N
Sbjct: 1 MGLPRPVLWLRRLWVLLQVAVQVAVGKVFLKLFPARVKQHIVAMN-----GKNPHFSYDN 55
Query: 204 WIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSGQRCHIWDFMQGNRPLVLN 383
W PT +S QYFWFVLKV+WQRLED+TE GGLAPNCPVV LSGQRC+IWDFMQGNRPLVLN
Sbjct: 56 WAPTLYSMQYFWFVLKVQWQRLEDRTEPGGLAPNCPVVRLSGQRCNIWDFMQGNRPLVLN 115
Query: 384 FGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNVDIKNHQNXXXX 563
FGSCT PSF+FKFDQFKRLIEDF S ADFLIIYIEEAHASDGWAFKNNV+I+ HQ
Sbjct: 116 FGSCTUPSFLFKFDQFKRLIEDFCSTADFLIIYIEEAHASDGWAFKNNVNIRTHQTLQDR 175
Query: 564 XXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWNYHPEEV 743
+P CPVVVDTM+NQSS+ YAALPERL+VLQ GRILYKGKPGPWNYHPEEV
Sbjct: 176 LQAARLLLDRAPPCPVVVDTMRNQSSQFYAALPERLFVLQEGRILYKGKPGPWNYHPEEV 235
Query: 744 RAVLEKLHS 770
RAVLEKLHS
Sbjct: 236 RAVLEKLHS 244
>ref|XP_855606.1| PREDICTED: type I iodothyronine deiodinase [Canis familiaris].
Length = 244
Score = 394 bits (1012), Expect = e-109
Identities = 188/249 (75%), Positives = 207/249 (83%)
Frame = +3
Query: 24 MELPLPGLWLKRLWVLFQVALHVAMGKVLMTLFPGRVKQDILAMSQKTGMAKNPHFSHEN 203
M LP P LWL+RLWVL QVA+ VA+GKV + LFP RVKQ I+AM+ KNPHFS++N
Sbjct: 1 MGLPRPVLWLRRLWVLLQVAVQVAVGKVFLKLFPARVKQHIVAMN-----GKNPHFSYDN 55
Query: 204 WIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSGQRCHIWDFMQGNRPLVLN 383
W PT +S QYFWFVLKV+WQRLED+TE GGLAPNCPVV LSGQRC+IWDFMQGNRPLVLN
Sbjct: 56 WAPTLYSMQYFWFVLKVQWQRLEDRTEPGGLAPNCPVVRLSGQRCNIWDFMQGNRPLVLN 115
Query: 384 FGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNVDIKNHQNXXXX 563
FGSCT PSF+FKFDQFKRLIEDF S ADFLIIYIEEAHASDGWAFKNNV+I+ HQ
Sbjct: 116 FGSCTUPSFLFKFDQFKRLIEDFCSTADFLIIYIEEAHASDGWAFKNNVNIRTHQTLQDR 175
Query: 564 XXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWNYHPEEV 743
+P CPVVVDTM+NQSS+ YAALPERL+VLQ GRILYKGKPGPWNYHPEEV
Sbjct: 176 LQAARLLLDRAPPCPVVVDTMRNQSSQFYAALPERLFVLQEGRILYKGKPGPWNYHPEEV 235
Query: 744 RAVLEKLHS 770
RAVLEKLHS
Sbjct: 236 RAVLEKLHS 244
>ref|NP_001157660.1| deiodinase, iodothyronine, type III [Canis lupus familiaris].
Length = 304
Score = 141 bits (355), Expect = 1e-33
Identities = 81/192 (42%), Positives = 108/192 (56%), Gaps = 2/192 (1%)
Frame = +3
Query: 192 SHENWIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSG-QRCHIWDFMQGNR 368
S +N + T S + W K+ + + + EGG APN VV +G Q HI D+ +GNR
Sbjct: 103 SDDNRLCTLASLKAVWHGQKLDFFK---QAHEGGPAPNSEVVLPNGFQNQHILDYARGNR 159
Query: 369 PLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNN-VDIKNH 545
PLVLNFGSCT P F+ + F RL+ + DFLIIYIEEAH SDGW ++ I H
Sbjct: 160 PLVLNFGSCTUPPFMARMSAFHRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYSIPQH 219
Query: 546 QNXXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWN 725
++ +P C +V+DTM N SS Y A ERLYV+Q G ++Y+G GP
Sbjct: 220 RSLEDRVSAAQVLQQGAPSCSLVLDTMANSSSSAYGAYFERLYVIQNGTVMYQGGRGPDG 279
Query: 726 YHPEEVRAVLEK 761
Y E+R LE+
Sbjct: 280 YQVSELRTWLER 291
>ref|NP_001116117.1| type II iodothyronine deiodinase [Canis lupus familiaris].
Length = 269
Score = 120 bits (300), Expect = 3e-27
Identities = 63/154 (40%), Positives = 87/154 (56%), Gaps = 7/154 (4%)
Frame = +3
Query: 321 LSGQRCHIWDFMQGNRPLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHA 500
+ G CH+ DF RPLV+NFGS T P F + F +L+E+FSS+ADFL++YI+EAH
Sbjct: 107 VDGAECHLLDFASPERPLVVNFGSATUPPFTSQLPAFSKLVEEFSSVADFLLVYIDEAHP 166
Query: 501 SDGWAFKN----NVDIKNHQN---XXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAAL 659
SDGWA + ++K H+N PQC VV D M N ++ Y
Sbjct: 167 SDGWAVPGDSSLSFEVKKHRNQEDRCAAAHQLLERFSLPPQCRVVADRMDNNANVAYGVA 226
Query: 660 PERLYVLQAGRILYKGKPGPWNYHPEEVRAVLEK 761
ER+ ++Q +I Y G GP+ Y+ +EVR LEK
Sbjct: 227 FERVCIVQRQKIAYLGGKGPFYYNLQEVRRWLEK 260
>ref|XP_547984.2| PREDICTED: similar to Type III iodothyronine deiodinase (Type-III
5deiodinase) (DIOIII) (Type 3 DI) (5DIII) [Canis
familiaris].
Length = 169
Score = 53.5 bits (127), Expect = 4e-07
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +3
Query: 192 SHENWIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSG-QRCHIWDFMQGNR 368
S +N + T S + W K+ + + + EGG APN VV +G Q HI D+ +GNR
Sbjct: 103 SDDNRLCTLASLKAVWHGQKLDFFK---QAHEGGPAPNSEVVLPNGFQNQHILDYARGNR 159
Query: 369 PLVLNFGSCT 398
PLVLNFGSCT
Sbjct: 160 PLVLNFGSCT 169
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,078,019
Number of extensions: 1301396
Number of successful extensions: 4227
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4215
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 304
Effective length of database: 15,374,224
Effective search space: 4673764096
Effective search space used: 4673764096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008884
(1227 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001627.1| type I iodothyronine deiodinase [Sus scrofa]. 486 e-137
Alignment gi|NP_001001625.1| type III iodothyronine deiodinase [Sus scrof... 144 1e-34
Alignment gi|NP_001001626.1| type II iodothyronine deiodinase [Sus scrofa]. 122 5e-28
>ref|NP_001001627.1| type I iodothyronine deiodinase [Sus scrofa].
Length = 249
Score = 486 bits (1250), Expect = e-137
Identities = 234/249 (93%), Positives = 234/249 (93%)
Frame = +3
Query: 24 MELPLPGLWLKRLWVLFQVALHVAMGKVLMTLFPGRVKQDILAMSQKTGMAKNPHFSHEN 203
MELPLPGLWLKRLWVLFQVALHVAMGKVLMTLFPGRVKQDILAMSQKTGMAKNPHFSHEN
Sbjct: 1 MELPLPGLWLKRLWVLFQVALHVAMGKVLMTLFPGRVKQDILAMSQKTGMAKNPHFSHEN 60
Query: 204 WIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSGQRCHIWDFMQGNRPLVLN 383
WIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSGQRCHIWDFMQGNRPLVLN
Sbjct: 61 WIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSGQRCHIWDFMQGNRPLVLN 120
Query: 384 FGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNVDIKNHQNXXXX 563
FGSCT PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNVDIKNHQN
Sbjct: 121 FGSCTUPSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNVDIKNHQNLQDR 180
Query: 564 XXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWNYHPEEV 743
SPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWNYHPEEV
Sbjct: 181 LRAAHLLLDRSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWNYHPEEV 240
Query: 744 RAVLEKLHS 770
RAVLEKLHS
Sbjct: 241 RAVLEKLHS 249
>ref|NP_001001625.1| type III iodothyronine deiodinase [Sus scrofa].
Length = 278
Score = 144 bits (362), Expect = 1e-34
Identities = 82/192 (42%), Positives = 110/192 (57%), Gaps = 2/192 (1%)
Frame = +3
Query: 192 SHENWIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSG-QRCHIWDFMQGNR 368
S +N + T S + W K+ + + + EGG APN VV G Q HI D+ +GNR
Sbjct: 77 SDDNRLCTLASLRAVWHGQKLDFFK---QAHEGGPAPNSEVVLPDGFQNQHILDYARGNR 133
Query: 369 PLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNN-VDIKNH 545
PLVLNFGSCT P F+ + F+RL+ + DFLIIYIEEAH SDGW ++ I H
Sbjct: 134 PLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYSIPQH 193
Query: 546 QNXXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWN 725
++ +P+C +V+DTM N SS Y A ERLYV+Q+G I+Y+G GP
Sbjct: 194 RSLEDRVSAARVLQQGAPECSLVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDG 253
Query: 726 YHPEEVRAVLEK 761
Y E+R LE+
Sbjct: 254 YQVSELRTWLER 265
>ref|NP_001001626.1| type II iodothyronine deiodinase [Sus scrofa].
Length = 265
Score = 122 bits (305), Expect = 5e-28
Identities = 64/155 (41%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Frame = +3
Query: 318 SLSGQRCHIWDFMQGNRPLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAH 497
++ G CH+ DF RPLV+NFGS T P F + F +L+E+FSS+ADFL++YI+EAH
Sbjct: 106 TVDGAECHLLDFANPERPLVVNFGSATUPPFTSQLPAFSKLVEEFSSVADFLLVYIDEAH 165
Query: 498 ASDGWAFKN----NVDIKNHQN---XXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAA 656
SDGWA + ++K HQN PQC VV D M N ++ Y
Sbjct: 166 PSDGWAVPGDSSLSFEVKKHQNQEDRCAAAHQLLERFSLPPQCRVVADRMDNNANVAYGV 225
Query: 657 LPERLYVLQAGRILYKGKPGPWNYHPEEVRAVLEK 761
ER+ ++Q +I Y G GP+ Y+ +EVR LEK
Sbjct: 226 AFERVCIVQRQKIAYLGGKGPFYYNLQEVRRWLEK 260
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,376,886
Number of extensions: 814932
Number of successful extensions: 2593
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2588
Number of HSP's successfully gapped: 3
Length of query: 409
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,829,335
Effective search space: 2719435180
Effective search space used: 2719435180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008884
(1227 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031886.3| type I iodothyronine deiodinase [Mus musculus]. 392 e-109
Alignment gi|NP_742117.2| type III iodothyronine deiodinase [Mus musculus]. 137 2e-32
Alignment gi|NP_034180.1| type II iodothyronine deiodinase [Mus musculus]. 123 3e-28
>ref|NP_031886.3| type I iodothyronine deiodinase [Mus musculus].
Length = 257
Score = 392 bits (1007), Expect = e-109
Identities = 188/256 (73%), Positives = 213/256 (83%)
Frame = +3
Query: 24 MELPLPGLWLKRLWVLFQVALHVAMGKVLMTLFPGRVKQDILAMSQKTGMAKNPHFSHEN 203
M LP LWLKRL + QVAL VA+GKVLMTLFPGRVKQ ILAM QKTGMA+NP F+ +N
Sbjct: 1 MGLPQLWLWLKRLVIFLQVALEVAVGKVLMTLFPGRVKQSILAMGQKTGMARNPRFAPDN 60
Query: 204 WIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSGQRCHIWDFMQGNRPLVLN 383
W+PTFFS QYFWFVLKVRWQRLED+ E GGLAPNC VV LSGQ+C+IWDF+QG+RPLVLN
Sbjct: 61 WVPTFFSIQYFWFVLKVRWQRLEDRAEFGGLAPNCTVVCLSGQKCNIWDFIQGSRPLVLN 120
Query: 384 FGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNVDIKNHQNXXXX 563
FGSCT PSF+ KFDQFKRL++DF+S ADFLIIYIEEAHA+DGWAFKNNVDI+ H++
Sbjct: 121 FGSCTUPSFLLKFDQFKRLVDDFASTADFLIIYIEEAHATDGWAFKNNVDIRQHRSLQER 180
Query: 564 XXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWNYHPEEV 743
SPQCPVVVDTM+NQSS+LYAALPERLYV+Q GRI YKGK GPWNY+PEEV
Sbjct: 181 VRAARMLLARSPQCPVVVDTMQNQSSQLYAALPERLYVIQEGRICYKGKAGPWNYNPEEV 240
Query: 744 RAVLEKLHS*SGQMPQ 791
RAVLEKL + +PQ
Sbjct: 241 RAVLEKLCTPPRHVPQ 256
>ref|NP_742117.2| type III iodothyronine deiodinase [Mus musculus].
Length = 304
Score = 137 bits (345), Expect = 2e-32
Identities = 81/192 (42%), Positives = 107/192 (55%), Gaps = 2/192 (1%)
Frame = +3
Query: 192 SHENWIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSG-QRCHIWDFMQGNR 368
S +N + T S + W K+ + + + EGG APN VV G Q I D+ QG R
Sbjct: 103 SDDNRLCTLASLKAVWHGQKLDFFK---QAHEGGPAPNSEVVRPDGFQSQRILDYAQGTR 159
Query: 369 PLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNN-VDIKNH 545
PLVLNFGSCT P F+ + F+RL+ + DFLIIYIEEAH SDGW ++ I H
Sbjct: 160 PLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYVIPQH 219
Query: 546 QNXXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWN 725
++ +P C +V+DTM N SS Y A ERLYV+Q+G I+Y+G GP
Sbjct: 220 RSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDG 279
Query: 726 YHPEEVRAVLEK 761
Y E+R LE+
Sbjct: 280 YQVSELRTWLER 291
>ref|NP_034180.1| type II iodothyronine deiodinase [Mus musculus].
Length = 266
Score = 123 bits (308), Expect = 3e-28
Identities = 69/177 (38%), Positives = 96/177 (54%), Gaps = 22/177 (12%)
Frame = +3
Query: 297 APNCPVVSLS---------------GQRCHIWDFMQGNRPLVLNFGSCT*PSFIFKFDQF 431
APN VV +S G CH+ DF RPLV+NFGS T P F + F
Sbjct: 81 APNSSVVHVSNPESGNNYASEKTADGAECHLLDFASAERPLVVNFGSATUPPFTRQLPAF 140
Query: 432 KRLIEDFSSIADFLIIYIEEAHASDGWAFKN----NVDIKNHQN---XXXXXXXXXXXXX 590
++L+E+FSS+ADFL++YI+EAH SDGWA + ++K H+N
Sbjct: 141 RQLVEEFSSVADFLLVYIDEAHPSDGWAVPGDSSLSFEVKKHRNQEDRCAAAHQLLERFS 200
Query: 591 XSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWNYHPEEVRAVLEK 761
PQC VV D M N ++ Y ER+ ++Q +I Y G GP++Y+ +EVR+ LEK
Sbjct: 201 LPPQCQVVADRMDNNANVAYGVAFERVCIVQRRKIAYLGGKGPFSYNLQEVRSWLEK 257
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,808,419
Number of extensions: 1074760
Number of successful extensions: 3417
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3411
Number of HSP's successfully gapped: 3
Length of query: 409
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 305
Effective length of database: 12,493,815
Effective search space: 3810613575
Effective search space used: 3810613575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008884
(1227 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000783.2| type I iodothyronine deiodinase isoform a [Homo... 428 e-120
Alignment gi|NP_001034804.1| type I iodothyronine deiodinase isoform c [H... 315 7e-86
Alignment gi|NP_001034805.1| type I iodothyronine deiodinase isoform d [H... 290 2e-78
Alignment gi|NP_998758.1| type I iodothyronine deiodinase isoform b [Homo... 233 4e-61
Alignment gi|NP_001353.4| type III iodothyronine deiodinase [Homo sapiens]. 142 6e-34
Alignment gi|NP_054644.1| type II iodothyronine deiodinase isoform a [Hom... 122 5e-28
Alignment gi|NP_001007024.1| type II iodothyronine deiodinase isoform b [... 122 5e-28
Alignment gi|NP_000784.2| type II iodothyronine deiodinase isoform a [Hom... 122 5e-28
>ref|NP_000783.2| type I iodothyronine deiodinase isoform a [Homo sapiens].
Length = 249
Score = 428 bits (1100), Expect = e-120
Identities = 200/249 (80%), Positives = 220/249 (88%)
Frame = +3
Query: 24 MELPLPGLWLKRLWVLFQVALHVAMGKVLMTLFPGRVKQDILAMSQKTGMAKNPHFSHEN 203
M LP PGLWLKRLWVL +VA+HV +GKVL+ LFP RVK++ILAM +KTGM +NPHFSH+N
Sbjct: 1 MGLPQPGLWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTGMTRNPHFSHDN 60
Query: 204 WIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSGQRCHIWDFMQGNRPLVLN 383
WIPTFFS QYFWFVLKVRWQRLED TE GGLAPNCPVV LSGQRC+IW+FMQGNRPLVLN
Sbjct: 61 WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWEFMQGNRPLVLN 120
Query: 384 FGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNVDIKNHQNXXXX 563
FGSCT PSF+FKFDQFKRLIEDFSSIADFL+IYIEEAHASDGWAFKNN+DI+NHQN
Sbjct: 121 FGSCTUPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNNMDIRNHQNLQDR 180
Query: 564 XXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWNYHPEEV 743
SPQCPVVVDTM+NQSS+LYAALPERLY++Q GRILYKGK GPWNY+PEEV
Sbjct: 181 LQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEV 240
Query: 744 RAVLEKLHS 770
RAVLEKLHS
Sbjct: 241 RAVLEKLHS 249
>ref|NP_001034804.1| type I iodothyronine deiodinase isoform c [Homo sapiens].
Length = 201
Score = 315 bits (806), Expect = 7e-86
Identities = 155/249 (62%), Positives = 173/249 (69%)
Frame = +3
Query: 24 MELPLPGLWLKRLWVLFQVALHVAMGKVLMTLFPGRVKQDILAMSQKTGMAKNPHFSHEN 203
M LP PGLWLKRLWVL +VA+HV +GKVL+ LFP RVK++ILAM +KTGM +NPHFSH+N
Sbjct: 1 MGLPQPGLWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTGMTRNPHFSHDN 60
Query: 204 WIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSGQRCHIWDFMQGNRPLVLN 383
WIPTFFS QYFWFVLKVRWQRLED TE GGLAPNCPVV LSGQRC+IW+FMQ
Sbjct: 61 WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWEFMQ-------- 112
Query: 384 FGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNVDIKNHQNXXXX 563
DGWAFKNN+DI+NHQN
Sbjct: 113 ----------------------------------------DGWAFKNNMDIRNHQNLQDR 132
Query: 564 XXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWNYHPEEV 743
SPQCPVVVDTM+NQSS+LYAALPERLY++Q GRILYKGK GPWNY+PEEV
Sbjct: 133 LQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEV 192
Query: 744 RAVLEKLHS 770
RAVLEKLHS
Sbjct: 193 RAVLEKLHS 201
>ref|NP_001034805.1| type I iodothyronine deiodinase isoform d [Homo sapiens].
Length = 161
Score = 290 bits (742), Expect = 2e-78
Identities = 134/160 (83%), Positives = 147/160 (91%)
Frame = +3
Query: 24 MELPLPGLWLKRLWVLFQVALHVAMGKVLMTLFPGRVKQDILAMSQKTGMAKNPHFSHEN 203
M LP PGLWLKRLWVL +VA+HV +GKVL+ LFP RVK++ILAM +KTGM +NPHFSH+N
Sbjct: 1 MGLPQPGLWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTGMTRNPHFSHDN 60
Query: 204 WIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSGQRCHIWDFMQGNRPLVLN 383
WIPTFFS QYFWFVLKVRWQRLED TE GGLAPNCPVV LSGQRC+IW+FMQGNRPLVLN
Sbjct: 61 WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWEFMQGNRPLVLN 120
Query: 384 FGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHAS 503
FGSCT PSF+FKFDQFKRLIEDFSSIADFL+IYIEEAHAS
Sbjct: 121 FGSCTUPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS 160
>ref|NP_998758.1| type I iodothyronine deiodinase isoform b [Homo sapiens].
Length = 185
Score = 233 bits (593), Expect = 4e-61
Identities = 111/137 (81%), Positives = 120/137 (87%)
Frame = +3
Query: 360 GNRPLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNVDIK 539
GNRPLVLNFGSCT PSF+FKFDQFKRLIEDFSSIADFL+IYIEEAHASDGWAFKNN+DI+
Sbjct: 49 GNRPLVLNFGSCTUPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNNMDIR 108
Query: 540 NHQNXXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGP 719
NHQN SPQCPVVVDTM+NQSS+LYAALPERLY++Q GRILYKGK GP
Sbjct: 109 NHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGP 168
Query: 720 WNYHPEEVRAVLEKLHS 770
WNY+PEEVRAVLEKLHS
Sbjct: 169 WNYNPEEVRAVLEKLHS 185
Score = 77.0 bits (188), Expect = 3e-14
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = +3
Query: 24 MELPLPGLWLKRLWVLFQVALHVAMGKVLMTLFPGRVKQDILAMSQKTG 170
M LP PGLWLKRLWVL +VA+HV +GKVL+ LFP RVK++ILAM +KTG
Sbjct: 1 MGLPQPGLWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 49
>ref|NP_001353.4| type III iodothyronine deiodinase [Homo sapiens].
Length = 304
Score = 142 bits (358), Expect = 6e-34
Identities = 83/192 (43%), Positives = 109/192 (56%), Gaps = 2/192 (1%)
Frame = +3
Query: 192 SHENWIPTFFSAQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVSLSG-QRCHIWDFMQGNR 368
S +N + T S + W K+ + + + EGG APN VV G Q HI D+ QGNR
Sbjct: 103 SDDNRLCTLASLKAVWHGQKLDFFK---QAHEGGPAPNSEVVLPDGFQSQHILDYAQGNR 159
Query: 369 PLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNN-VDIKNH 545
PLVLNFGSCT P F+ + F+RL+ + DFLIIYIEEAH SDGW ++ I H
Sbjct: 160 PLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQH 219
Query: 546 QNXXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPERLYVLQAGRILYKGKPGPWN 725
++ +P C +V+DTM N SS Y A ERLYV+Q+G I+Y+G GP
Sbjct: 220 RSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDG 279
Query: 726 YHPEEVRAVLEK 761
Y E+R LE+
Sbjct: 280 YQVSELRTWLER 291
>ref|NP_054644.1| type II iodothyronine deiodinase isoform a [Homo sapiens].
Length = 273
Score = 122 bits (307), Expect = 5e-28
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Frame = +3
Query: 327 GQRCHIWDFMQGNRPLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASD 506
G CH+ DF RPLV+NFGS T P F + F++L+E+FSS+ADFL++YI+EAH SD
Sbjct: 109 GATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSD 168
Query: 507 GWAFKN----NVDIKNHQN---XXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPE 665
GWA + ++K HQN PQC VV D M N ++ Y E
Sbjct: 169 GWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFE 228
Query: 666 RLYVLQAGRILYKGKPGPWNYHPEEVRAVLEK 761
R+ ++Q +I Y G GP++Y+ +EVR LEK
Sbjct: 229 RVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEK 260
>ref|NP_001007024.1| type II iodothyronine deiodinase isoform b [Homo sapiens].
Length = 309
Score = 122 bits (307), Expect = 5e-28
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Frame = +3
Query: 327 GQRCHIWDFMQGNRPLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASD 506
G CH+ DF RPLV+NFGS T P F + F++L+E+FSS+ADFL++YI+EAH SD
Sbjct: 145 GATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSD 204
Query: 507 GWAFKN----NVDIKNHQN---XXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPE 665
GWA + ++K HQN PQC VV D M N ++ Y E
Sbjct: 205 GWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFE 264
Query: 666 RLYVLQAGRILYKGKPGPWNYHPEEVRAVLEK 761
R+ ++Q +I Y G GP++Y+ +EVR LEK
Sbjct: 265 RVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEK 296
>ref|NP_000784.2| type II iodothyronine deiodinase isoform a [Homo sapiens].
Length = 273
Score = 122 bits (307), Expect = 5e-28
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Frame = +3
Query: 327 GQRCHIWDFMQGNRPLVLNFGSCT*PSFIFKFDQFKRLIEDFSSIADFLIIYIEEAHASD 506
G CH+ DF RPLV+NFGS T P F + F++L+E+FSS+ADFL++YI+EAH SD
Sbjct: 109 GATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSD 168
Query: 507 GWAFKN----NVDIKNHQN---XXXXXXXXXXXXXXSPQCPVVVDTMKNQSSRLYAALPE 665
GWA + ++K HQN PQC VV D M N ++ Y E
Sbjct: 169 GWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFE 228
Query: 666 RLYVLQAGRILYKGKPGPWNYHPEEVRAVLEK 761
R+ ++Q +I Y G GP++Y+ +EVR LEK
Sbjct: 229 RVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEK 260
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,198,264
Number of extensions: 1280047
Number of successful extensions: 4171
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4163
Number of HSP's successfully gapped: 10
Length of query: 409
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,835,944
Effective search space: 4510126976
Effective search space used: 4510126976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008884
(1227 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1041 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1041 bits (525), Expect = 0.0
Identities = 525/525 (100%)
Strand = Plus / Minus
Query: 703 agggtaaacctggcccctggaactaccacccagaagaagttcgtgctgttctggaaaagc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146077274 agggtaaacctggcccctggaactaccacccagaagaagttcgtgctgttctggaaaagc 146077215
Query: 763 tccacagttaatctggacagatgccccagttctaggtgccaaacaggagggctcctaagg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146077214 tccacagttaatctggacagatgccccagttctaggtgccaaacaggagggctcctaagg 146077155
Query: 823 cttggctcgcccgccatccatcccggctgatgttcacctcttgacctgtgtccccagctg 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146077154 cttggctcgcccgccatccatcccggctgatgttcacctcttgacctgtgtccccagctg 146077095
Query: 883 aatcactggtcaggatctttctgatccaagcaaacaattgttacaatgcgaaaacgaagc 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146077094 aatcactggtcaggatctttctgatccaagcaaacaattgttacaatgcgaaaacgaagc 146077035
Query: 943 aagctgagggctagagaagatacgactccacaccgccccctccagggaaacctgtatatt 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146077034 aagctgagggctagagaagatacgactccacaccgccccctccagggaaacctgtatatt 146076975
Query: 1003 gcacatctcagcgtgagagtaggtcctccctgggcttacttaggaggggtggtctctctc 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146076974 gcacatctcagcgtgagagtaggtcctccctgggcttacttaggaggggtggtctctctc 146076915
Query: 1063 cagccactttgctatggcatttcttaaacaaagtaatttcatttcaccaagtttgccatt 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146076914 cagccactttgctatggcatttcttaaacaaagtaatttcatttcaccaagtttgccatt 146076855
Query: 1123 tatggaattgatcacttaagacactaaactggttttcagcactaagcatgggagatctcc 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146076854 tatggaattgatcacttaagacactaaactggttttcagcactaagcatgggagatctcc 146076795
Query: 1183 gggtgtttagagagtgatgaagaatttaaagggaaacgagaagga 1227
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146076794 gggtgtttagagagtgatgaagaatttaaagggaaacgagaagga 146076750
Score = 716 bits (361), Expect = 0.0
Identities = 361/361 (100%)
Strand = Plus / Minus
Query: 1 gagccagctctggctgtgccgagatggagctgcccctgccagggctgtggctgaagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146094289 gagccagctctggctgtgccgagatggagctgcccctgccagggctgtggctgaagaggc 146094230
Query: 61 tctgggtgctctttcaggtggccctgcacgtggccatgggcaaagtgctcatgacattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146094229 tctgggtgctctttcaggtggccctgcacgtggccatgggcaaagtgctcatgacattgt 146094170
Query: 121 ttcctgggagagtcaagcaggacatcctggccatgagccagaagacgggcatggccaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146094169 ttcctgggagagtcaagcaggacatcctggccatgagccagaagacgggcatggccaaga 146094110
Query: 181 accctcacttctcccacgagaactggatccccaccttcttcagtgcccagtatttctggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146094109 accctcacttctcccacgagaactggatccccaccttcttcagtgcccagtatttctggt 146094050
Query: 241 ttgtgctgaaggtccgatggcaacgactggaggacaaaactgaggaagggggtctggccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146094049 ttgtgctgaaggtccgatggcaacgactggaggacaaaactgaggaagggggtctggccc 146093990
Query: 301 caaactgccccgtggtcagcctgtcaggacagaggtgccacatctgggacttcatgcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146093989 caaactgccccgtggtcagcctgtcaggacagaggtgccacatctgggacttcatgcaag 146093930
Query: 361 g 361
|
Sbjct: 146093929 g 146093929
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Minus
Query: 503 agatggctgggcttttaagaacaacgtggacatcaagaatcaccagaatctccaggaccg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146080452 agatggctgggcttttaagaacaacgtggacatcaagaatcaccagaatctccaggaccg 146080393
Query: 563 cttgcgggcagcccacctgctgctggacaggagcccccagtgccccgtggtggtggacac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146080392 cttgcgggcagcccacctgctgctggacaggagcccccagtgccccgtggtggtggacac 146080333
Query: 623 aatgaagaaccagagcagtcggctctacgcggcgctgcccgagaggctctatgtgctcca 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146080332 aatgaagaaccagagcagtcggctctacgcggcgctgcccgagaggctctatgtgctcca 146080273
Query: 683 ggcgggcaggatcctgtacaagg 705
|||||||||||||||||||||||
Sbjct: 146080272 ggcgggcaggatcctgtacaagg 146080250
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 703 agggtaaacctggcccctggaactaccacccagaagaagttcgtgctgttctggaaaagc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146078354 agggtaaacctggcccctggaactaccacccagaagaagttcgtgctgttctggaaaagc 146078295
Query: 763 tccacagttaatctggacagatgccccagttctaggtgccaaacaggagggctcctaagg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146078294 tccacagttaatctggacagatgccccagttctaggtgccaaacaggagggctcctaagg 146078235
Query: 823 cttggctcgcccgccatccatcccggctgatgttcacctcttgacctgtgtccccagctg 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146078234 cttggctcgcccgccatccatcccggctgatgttcacctcttgacctgtgtccccagctg 146078175
Query: 883 aatcactggtcaggatctttct 904
||||||||||||||||||||||
Sbjct: 146078174 aatcactggtcaggatctttct 146078153
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 359 aggcaacaggccactagtgctaaatttcggaagttgcacctgaccttcatttattttcaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146085273 aggcaacaggccactagtgctaaatttcggaagttgcacctgaccttcatttattttcaa 146085214
Query: 419 atttgaccaattcaagagacttattgaagattttagttccatagcagattttctcatcat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146085213 atttgaccaattcaagagacttattgaagattttagttccatagcagattttctcatcat 146085154
Query: 479 ttacattgaagaagcacatgcatcag 504
||||||||||||||||||||||||||
Sbjct: 146085153 ttacattgaagaagcacatgcatcag 146085128
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,314,153
Number of extensions: 262
Number of successful extensions: 262
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 5
Length of query: 1227
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1206
Effective length of database: 2,808,413,156
Effective search space: 3386946266136
Effective search space used: 3386946266136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)