Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008885
(1166 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192419.1| mitochondrial inner membrane protease ATP23 ... 478 e-135
Alignment gi|XP_002687600.1| PREDICTED: Ku70-binding protein-like [Bos ta... 478 e-135
>ref|NP_001192419.1| mitochondrial inner membrane protease ATP23 homolog [Bos taurus].
Length = 246
Score = 478 bits (1231), Expect = e-135
Identities = 227/246 (92%), Positives = 236/246 (95%)
Frame = +3
Query: 231 MAGAPDERGPGPAAREPLQQQHVGCQVFPERLAQGKPQQGFLSSFFTDNQKCQLMLLKTL 410
MA APDER PG A E LQQQHVGCQVF ERLAQGKPQQGFLSSFFT+NQKCQLMLLKTL
Sbjct: 1 MAEAPDEREPGSVAGEQLQQQHVGCQVFSERLAQGKPQQGFLSSFFTNNQKCQLMLLKTL 60
Query: 411 ETNPYVKLLLDAMKHSGCAVSKERHFSCEDCNGNVSGGFDASVSQIVLCQNNIRNQAHMN 590
TNPYVKLLLDAMKHSGCAV+K+RHFSCEDCNGNVSGGFD+SVSQIVLCQNNIRNQAHMN
Sbjct: 61 ATNPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDSSVSQIVLCQNNIRNQAHMN 120
Query: 591 RVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLLNEIFRLHFGLKQHHQT 770
RVVTHELIHAFDHCRAHV+WFTN+RHLACSEVRAANLSGDCS LNEIFRLHFGLKQHHQT
Sbjct: 121 RVVTHELIHAFDHCRAHVNWFTNVRHLACSEVRAANLSGDCSFLNEIFRLHFGLKQHHQT 180
Query: 771 CVRDRAILSILAVRNISREVAQKAVDEVFESCFNDHEPFGRIPHNQTYARYAHRDFQNRD 950
CVRDRAI SILAVRNI++EVAQKAVDEVFESCFNDHEPFGRIPHN+TYARYAHRDFQNRD
Sbjct: 181 CVRDRAIRSILAVRNINKEVAQKAVDEVFESCFNDHEPFGRIPHNKTYARYAHRDFQNRD 240
Query: 951 RYYSNI 968
RYYSNI
Sbjct: 241 RYYSNI 246
>ref|XP_002687600.1| PREDICTED: Ku70-binding protein-like [Bos taurus].
Length = 246
Score = 478 bits (1231), Expect = e-135
Identities = 227/246 (92%), Positives = 236/246 (95%)
Frame = +3
Query: 231 MAGAPDERGPGPAAREPLQQQHVGCQVFPERLAQGKPQQGFLSSFFTDNQKCQLMLLKTL 410
MA APDER PG A E LQQQHVGCQVF ERLAQGKPQQGFLSSFFT+NQKCQLMLLKTL
Sbjct: 1 MAEAPDEREPGSVAGEQLQQQHVGCQVFSERLAQGKPQQGFLSSFFTNNQKCQLMLLKTL 60
Query: 411 ETNPYVKLLLDAMKHSGCAVSKERHFSCEDCNGNVSGGFDASVSQIVLCQNNIRNQAHMN 590
TNPYVKLLLDAMKHSGCAV+K+RHFSCEDCNGNVSGGFD+SVSQIVLCQNNIRNQAHMN
Sbjct: 61 ATNPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDSSVSQIVLCQNNIRNQAHMN 120
Query: 591 RVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLLNEIFRLHFGLKQHHQT 770
RVVTHELIHAFDHCRAHV+WFTN+RHLACSEVRAANLSGDCS LNEIFRLHFGLKQHHQT
Sbjct: 121 RVVTHELIHAFDHCRAHVNWFTNVRHLACSEVRAANLSGDCSFLNEIFRLHFGLKQHHQT 180
Query: 771 CVRDRAILSILAVRNISREVAQKAVDEVFESCFNDHEPFGRIPHNQTYARYAHRDFQNRD 950
CVRDRAI SILAVRNI++EVAQKAVDEVFESCFNDHEPFGRIPHN+TYARYAHRDFQNRD
Sbjct: 181 CVRDRAIRSILAVRNINKEVAQKAVDEVFESCFNDHEPFGRIPHNKTYARYAHRDFQNRD 240
Query: 951 RYYSNI 968
RYYSNI
Sbjct: 241 RYYSNI 246
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,486,067
Number of extensions: 1106315
Number of successful extensions: 5005
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4996
Number of HSP's successfully gapped: 2
Length of query: 388
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,240,222
Effective search space: 4044223048
Effective search space used: 4044223048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008885
(1166 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531653.2| PREDICTED: similar to Ku70-binding protein 3 [C... 432 e-121
>ref|XP_531653.2| PREDICTED: similar to Ku70-binding protein 3 [Canis familiaris].
Length = 267
Score = 432 bits (1112), Expect = e-121
Identities = 208/250 (83%), Positives = 224/250 (89%)
Frame = +3
Query: 219 SVDSMAGAPDERGPGPAAREPLQQQHVGCQVFPERLAQGKPQQGFLSSFFTDNQKCQLML 398
SVD + ER ++ QQQ V CQVFPER AQG QG LSS F+++Q CQ +L
Sbjct: 18 SVDGLDIIKAERRAEGEQQQQQQQQRVACQVFPERRAQGGSGQGLLSSVFSNDQGCQRLL 77
Query: 399 LKTLETNPYVKLLLDAMKHSGCAVSKERHFSCEDCNGNVSGGFDASVSQIVLCQNNIRNQ 578
LKTLETNPYVKLLLDAMKHSGCAV+KERHFSCEDCNGNVSGGFDAS SQIVLCQNNIRNQ
Sbjct: 78 LKTLETNPYVKLLLDAMKHSGCAVNKERHFSCEDCNGNVSGGFDASTSQIVLCQNNIRNQ 137
Query: 579 AHMNRVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLLNEIFRLHFGLKQ 758
AHMNRVVTHEL+HAFDHCRAHV+WFT++RHLACSEVRAANLSGDCSL+NEIFRLHFGLK+
Sbjct: 138 AHMNRVVTHELVHAFDHCRAHVNWFTDVRHLACSEVRAANLSGDCSLVNEIFRLHFGLKR 197
Query: 759 HHQTCVRDRAILSILAVRNISREVAQKAVDEVFESCFNDHEPFGRIPHNQTYARYAHRDF 938
HHQTCVRDRAILSILAVRNIS+EVAQKAVDEVFESCFND EPFGRIPHN+TYARYAHRDF
Sbjct: 198 HHQTCVRDRAILSILAVRNISKEVAQKAVDEVFESCFNDQEPFGRIPHNKTYARYAHRDF 257
Query: 939 QNRDRYYSNI 968
QNRDRYYSNI
Sbjct: 258 QNRDRYYSNI 267
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,306,735
Number of extensions: 1145291
Number of successful extensions: 5131
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5122
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 283
Effective length of database: 15,374,224
Effective search space: 4350905392
Effective search space used: 4350905392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008885
(1166 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,695,546
Number of extensions: 712096
Number of successful extensions: 3201
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3196
Number of HSP's successfully gapped: 0
Length of query: 388
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 287
Effective length of database: 8,829,335
Effective search space: 2534019145
Effective search space used: 2534019145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008885
(1166 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153031.1| mitochondrial inner membrane protease ATP23 ... 418 e-117
Alignment gi|NP_081134.2| mitochondrial inner membrane protease ATP23 hom... 290 2e-78
>ref|NP_001153031.1| mitochondrial inner membrane protease ATP23 homolog isoform 1 [Mus
musculus].
Length = 246
Score = 418 bits (1075), Expect = e-117
Identities = 202/246 (82%), Positives = 217/246 (88%)
Frame = +3
Query: 231 MAGAPDERGPGPAAREPLQQQHVGCQVFPERLAQGKPQQGFLSSFFTDNQKCQLMLLKTL 410
MAGAP GPAA EPL Q+ Q PE A GKPQQGFLSS FT +Q C LML KTL
Sbjct: 1 MAGAPGGGELGPAAGEPLLQRPDSGQGSPEPPAHGKPQQGFLSSLFTRDQSCPLMLQKTL 60
Query: 411 ETNPYVKLLLDAMKHSGCAVSKERHFSCEDCNGNVSGGFDASVSQIVLCQNNIRNQAHMN 590
+TNPYVKLLLDAMKHSGCAV++ RHFSCE C+GNVSGGFDAS SQIVLC+NNIRNQAHM
Sbjct: 61 DTNPYVKLLLDAMKHSGCAVNRGRHFSCEVCDGNVSGGFDASTSQIVLCENNIRNQAHMG 120
Query: 591 RVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLLNEIFRLHFGLKQHHQT 770
RVVTHELIHAFDHCRAHV WFTNIRHLACSE+RAA+LSGDCSL+NE+FRL FGLKQHHQT
Sbjct: 121 RVVTHELIHAFDHCRAHVHWFTNIRHLACSEIRAASLSGDCSLVNELFRLRFGLKQHHQT 180
Query: 771 CVRDRAILSILAVRNISREVAQKAVDEVFESCFNDHEPFGRIPHNQTYARYAHRDFQNRD 950
CVRDRA+LSILAVRN+SRE AQKAVDEVF++CFND EPFGRIPHNQTYARYAHRDFQNRD
Sbjct: 181 CVRDRAVLSILAVRNVSREEAQKAVDEVFQTCFNDREPFGRIPHNQTYARYAHRDFQNRD 240
Query: 951 RYYSNI 968
RYYSNI
Sbjct: 241 RYYSNI 246
>ref|NP_081134.2| mitochondrial inner membrane protease ATP23 homolog isoform 2 [Mus
musculus].
Length = 201
Score = 290 bits (741), Expect = 2e-78
Identities = 145/192 (75%), Positives = 158/192 (82%), Gaps = 3/192 (1%)
Frame = +3
Query: 231 MAGAPDERGPGPAAREPLQQQHVGCQVFPERLAQGKPQQGFLSSFFTDNQKCQLMLLKTL 410
MAGAP GPAA EPL Q+ Q PE A GKPQQGFLSS FT +Q C LML KTL
Sbjct: 1 MAGAPGGGELGPAAGEPLLQRPDSGQGSPEPPAHGKPQQGFLSSLFTRDQSCPLMLQKTL 60
Query: 411 ETNPYVKLLLDAMKHSGCAVSKERHFSCEDCNGNVSGGFDASVSQIVLCQNNIRNQAHMN 590
+TNPYVKLLLDAMKHSGCAV++ RHFSCE C+GNVSGGFDAS SQIVLC+NNIRNQAHM
Sbjct: 61 DTNPYVKLLLDAMKHSGCAVNRGRHFSCEVCDGNVSGGFDASTSQIVLCENNIRNQAHMG 120
Query: 591 RVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLLNEIFRLHFGLKQHHQ- 767
RVVTHELIHAFDHCRAHV WFTNIRHLACSE+RAA+LSGDCSL+NE+FRL FGLKQHHQ
Sbjct: 121 RVVTHELIHAFDHCRAHVHWFTNIRHLACSEIRAASLSGDCSLVNELFRLRFGLKQHHQI 180
Query: 768 --TCVRDRAILS 797
+CV A+ S
Sbjct: 181 ETSCVSRPAMNS 192
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,181,408
Number of extensions: 942085
Number of successful extensions: 3650
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3643
Number of HSP's successfully gapped: 2
Length of query: 388
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 285
Effective length of database: 12,523,851
Effective search space: 3569297535
Effective search space used: 3569297535
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008885
(1166 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_150592.1| mitochondrial inner membrane protease ATP23 hom... 479 e-135
>ref|NP_150592.1| mitochondrial inner membrane protease ATP23 homolog [Homo sapiens].
Length = 246
Score = 479 bits (1232), Expect = e-135
Identities = 227/246 (92%), Positives = 234/246 (95%)
Frame = +3
Query: 231 MAGAPDERGPGPAAREPLQQQHVGCQVFPERLAQGKPQQGFLSSFFTDNQKCQLMLLKTL 410
MAGAPDER GPAA E LQQQHV CQVFPERLAQG PQQGF SSFFT NQKCQL LLKTL
Sbjct: 1 MAGAPDERRRGPAAGEQLQQQHVSCQVFPERLAQGNPQQGFFSSFFTSNQKCQLRLLKTL 60
Query: 411 ETNPYVKLLLDAMKHSGCAVSKERHFSCEDCNGNVSGGFDASVSQIVLCQNNIRNQAHMN 590
ETNPYVKLLLDAMKHSGCAV+K+RHFSCEDCNGNVSGGFDAS SQIVLCQNNI NQAHMN
Sbjct: 61 ETNPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDASTSQIVLCQNNIHNQAHMN 120
Query: 591 RVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLLNEIFRLHFGLKQHHQT 770
RVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSL+NEIFRLHFGLKQHHQT
Sbjct: 121 RVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLVNEIFRLHFGLKQHHQT 180
Query: 771 CVRDRAILSILAVRNISREVAQKAVDEVFESCFNDHEPFGRIPHNQTYARYAHRDFQNRD 950
CVRDRA LSILAVRNIS+EVA+KAVDEVFESCFNDHEPFGRIPHN+TYARYAHRDF+NRD
Sbjct: 181 CVRDRATLSILAVRNISKEVAKKAVDEVFESCFNDHEPFGRIPHNKTYARYAHRDFENRD 240
Query: 951 RYYSNI 968
RYYSNI
Sbjct: 241 RYYSNI 246
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,514,262
Number of extensions: 1122506
Number of successful extensions: 4760
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4754
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,868,908
Effective search space: 4222769872
Effective search space used: 4222769872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008885
(1166 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 827 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 827 bits (417), Expect = 0.0
Identities = 417/417 (100%)
Strand = Plus / Plus
Query: 1 gttgtcccgccccacgcctcttgcctggcagccgatctgtctccctgctagaaatcctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24934284 gttgtcccgccccacgcctcttgcctggcagccgatctgtctccctgctagaaatcctct 24934343
Query: 61 ccagccggatggccctggccccgccctgcgactgttgcctggctggcttctggtcggcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24934344 ccagccggatggccctggccccgccctgcgactgttgcctggctggcttctggtcggcgg 24934403
Query: 121 gcggagggagggcctaggcggtgtgcgttggcgggagggaagtcaatttcccttgtctcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24934404 gcggagggagggcctaggcggtgtgcgttggcgggagggaagtcaatttcccttgtctcg 24934463
Query: 181 cctccggccgcccgtggcgggaggaagcaggggctaggtcagtggacagcatggcaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24934464 cctccggccgcccgtggcgggaggaagcaggggctaggtcagtggacagcatggcaggag 24934523
Query: 241 ctccggatgagcgtggcccgggccccgcggctagggaaccactgcagcagcaacacgtcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24934524 ctccggatgagcgtggcccgggccccgcggctagggaaccactgcagcagcaacacgtcg 24934583
Query: 301 gatgccaagtcttccccgagcggctggcccaggggaagccccagcaagggttcctctcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24934584 gatgccaagtcttccccgagcggctggcccaggggaagccccagcaagggttcctctcca 24934643
Query: 361 gcttctttaccgacaaccagaagtgccagctgatgctcctgaagacgctggagacaa 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24934644 gcttctttaccgacaaccagaagtgccagctgatgctcctgaagacgctggagacaa 24934700
Score = 704 bits (355), Expect = 0.0
Identities = 384/397 (96%)
Strand = Plus / Plus
Query: 766 agacttgtgtgagagacagagccattctttctatcctggctgttaggaacataagcagag 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24977103 agacttgtgtgagagacagagccattctttctatcctggctgttaggaacataagcagag 24977162
Query: 826 aagtcgctcagaaggctgttgatgaagtttttgaatcttgtttcaatgaccacgaacctt 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24977163 aagtcgctcagaaggctgttgatgaagtttttgaatcttgtttcaatgaccacgaacctt 24977222
Query: 886 ttggaaggatccctcataaccagacctatgcaagatacgctcatagagactttcagaacc 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24977223 ttggaaggatccctcataaccagacctatgcaagatacgctcatagagactttcagaacc 24977282
Query: 946 gggatcggtactattcaaatatatgaaggcagtgacacttttatatcacagagctgcagt 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24977283 gggatcggtactattcaaatatatgaaggcagtgacacttttatatcacagagctgcagt 24977342
Query: 1006 gatcatgnnnnnnnnnnttgtggttcccaagtggacaaacatataaaacgtaagtcatca 1065
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24977343 gatcatgaaaaaaaaaattgtggttcccaagtggacaaacatataaaacgtaagtcatca 24977402
Query: 1066 attaaatacacagaagacgccaaagatgctgattctagcatatgatcaggaaaaattact 1125
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 24977403 attaaatacacagaagacgccaaagatgctgattctagcatatgatcaggaaaagtaact 24977462
Query: 1126 gtggttagaaatgaaactgccttgggagttcctgcca 1162
||||| |||||||||||||||||||||||||||||||
Sbjct: 24977463 gtggtaagaaatgaaactgccttgggagttcctgcca 24977499
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 544 agattgttttgtgccagaataacatccggaatcaggctcatatgaacagagtggtcaccc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24970199 agattgttttgtgccagaataacatccggaatcaggctcatatgaacagagtggtcaccc 24970258
Query: 604 atgaactcattcatgcatttgatcattgtcgtgctcatgtggactggttcaccaatatca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24970259 atgaactcattcatgcatttgatcattgtcgtgctcatgtggactggttcaccaatatca 24970318
Query: 664 gacatttggcctgttctgaggt 685
||||||||||||||||||||||
Sbjct: 24970319 gacatttggcctgttctgaggt 24970340
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 682 aggttcgagctgctaaccttagtggagactgctcacttttaaatgaaatattcaggttac 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24973692 aggttcgagctgctaaccttagtggagactgctcacttttaaatgaaatattcaggttac 24973751
Query: 742 attttggattaaaacaacatcatcag 767
||||||||||||||||||||||||||
Sbjct: 24973752 attttggattaaaacaacatcatcag 24973777
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 463 gcgctgtgagcaaagaaagacacttttcctgtgaagattgtaatggaaatgtcagtgggg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24940273 gcgctgtgagcaaagaaagacacttttcctgtgaagattgtaatggaaatgtcagtgggg 24940332
Query: 523 gttttgacgcttctgtgtctcag 545
|||||||||||||||||||||||
Sbjct: 24940333 gttttgacgcttctgtgtctcag 24940355
Score = 91.7 bits (46), Expect = 8e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 418 atccatatgtcaaacttctacttgatgccatgaagcattcaggttg 463
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24938815 atccatatgtcaaacttctacttgatgccatgaagcattcaggttg 24938860
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,533,495
Number of extensions: 637
Number of successful extensions: 637
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 7
Length of query: 1166
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1145
Effective length of database: 2,808,413,156
Effective search space: 3215633063620
Effective search space used: 3215633063620
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)