Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008886
(1225 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694242.1| PREDICTED: MCFD2 protein-like [Bos taurus]. 266 4e-71
Alignment gi|XP_001790051.2| PREDICTED: MCFD2 protein-like [Bos taurus]. 266 4e-71
Alignment gi|NP_001035685.2| multiple coagulation factor deficiency 2 [Bo... 250 2e-66
Alignment gi|XP_002691358.1| PREDICTED: multiple coagulation factor defic... 250 2e-66
Alignment gi|XP_002691357.1| PREDICTED: multiple coagulation factor defic... 250 2e-66
Alignment gi|XP_002691354.1| PREDICTED: multiple coagulation factor defic... 250 2e-66
Alignment gi|XP_001789980.2| PREDICTED: multiple coagulation factor defic... 250 2e-66
Alignment gi|XP_002700794.1| PREDICTED: multiple coagulation factor defic... 250 2e-66
Alignment gi|XP_002691356.1| PREDICTED: multiple coagulation factor defic... 190 2e-48
Alignment gi|XP_002691355.1| PREDICTED: multiple coagulation factor defic... 190 2e-48
>ref|XP_002694242.1| PREDICTED: MCFD2 protein-like [Bos taurus].
Length = 202
Score = 266 bits (679), Expect = 4e-71
Identities = 138/176 (78%), Positives = 144/176 (81%), Gaps = 3/176 (1%)
Frame = +2
Query: 5 SEDRGWRGSRRGASLLRKAVWQLVAERVLVTMRSXXXXXXXXXXX---TFCASGARAKEP 175
++D WRGS AS L K WQLVA RV VTMRS FCA GARA+EP
Sbjct: 27 TKDGSWRGSCWRASRLGKNWWQLVAARVPVTMRSLRLLRIPFLCGLLWAFCAPGARAEEP 86
Query: 176 GASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLD 355
GAS SH GS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLD
Sbjct: 87 GASSSHHGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLD 146
Query: 356 GLELSTAITHVHKEEGNEQAPMSEDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ 523
LELSTAIT VHKEE +EQAPM+EDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ
Sbjct: 147 SLELSTAITQVHKEEESEQAPMNEDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ 202
>ref|XP_001790051.2| PREDICTED: MCFD2 protein-like [Bos taurus].
Length = 468
Score = 266 bits (679), Expect = 4e-71
Identities = 138/176 (78%), Positives = 144/176 (81%), Gaps = 3/176 (1%)
Frame = +2
Query: 5 SEDRGWRGSRRGASLLRKAVWQLVAERVLVTMRSXXXXXXXXXXX---TFCASGARAKEP 175
++D WRGS AS L K WQLVA RV VTMRS FCA GARA+EP
Sbjct: 293 TKDGSWRGSCWRASRLGKNWWQLVAARVPVTMRSLRLLRIPFLCGLLWAFCAPGARAEEP 352
Query: 176 GASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLD 355
GAS SH GS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLD
Sbjct: 353 GASSSHHGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLD 412
Query: 356 GLELSTAITHVHKEEGNEQAPMSEDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ 523
LELSTAIT VHKEE +EQAPM+EDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ
Sbjct: 413 SLELSTAITQVHKEEESEQAPMNEDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ 468
>ref|NP_001035685.2| multiple coagulation factor deficiency 2 [Bos taurus].
Length = 145
Score = 250 bits (638), Expect = 2e-66
Identities = 120/127 (94%), Positives = 124/127 (97%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA+EPGAS SH GS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK
Sbjct: 19 FCAPGARAEEPGASSSHHGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 78
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAPMSEDELINLIDGVLRDDDKNNDGYIDYA 502
MHDYDGNNLLDGLELSTAITHVHKEEG+EQAPM+EDELINLIDGVLRDDDKNNDGYIDYA
Sbjct: 79 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPMNEDELINLIDGVLRDDDKNNDGYIDYA 138
Query: 503 EFAKSLQ 523
EFAKSLQ
Sbjct: 139 EFAKSLQ 145
>ref|XP_002691358.1| PREDICTED: multiple coagulation factor deficiency 2 isoform 5 [Bos
taurus].
Length = 164
Score = 250 bits (638), Expect = 2e-66
Identities = 120/127 (94%), Positives = 124/127 (97%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA+EPGAS SH GS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK
Sbjct: 38 FCAPGARAEEPGASSSHHGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 97
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAPMSEDELINLIDGVLRDDDKNNDGYIDYA 502
MHDYDGNNLLDGLELSTAITHVHKEEG+EQAPM+EDELINLIDGVLRDDDKNNDGYIDYA
Sbjct: 98 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPMNEDELINLIDGVLRDDDKNNDGYIDYA 157
Query: 503 EFAKSLQ 523
EFAKSLQ
Sbjct: 158 EFAKSLQ 164
>ref|XP_002691357.1| PREDICTED: multiple coagulation factor deficiency 2 isoform 4 [Bos
taurus].
Length = 145
Score = 250 bits (638), Expect = 2e-66
Identities = 120/127 (94%), Positives = 124/127 (97%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA+EPGAS SH GS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK
Sbjct: 19 FCAPGARAEEPGASSSHHGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 78
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAPMSEDELINLIDGVLRDDDKNNDGYIDYA 502
MHDYDGNNLLDGLELSTAITHVHKEEG+EQAPM+EDELINLIDGVLRDDDKNNDGYIDYA
Sbjct: 79 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPMNEDELINLIDGVLRDDDKNNDGYIDYA 138
Query: 503 EFAKSLQ 523
EFAKSLQ
Sbjct: 139 EFAKSLQ 145
>ref|XP_002691354.1| PREDICTED: multiple coagulation factor deficiency 2 isoform 1 [Bos
taurus].
Length = 145
Score = 250 bits (638), Expect = 2e-66
Identities = 120/127 (94%), Positives = 124/127 (97%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA+EPGAS SH GS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK
Sbjct: 19 FCAPGARAEEPGASSSHHGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 78
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAPMSEDELINLIDGVLRDDDKNNDGYIDYA 502
MHDYDGNNLLDGLELSTAITHVHKEEG+EQAPM+EDELINLIDGVLRDDDKNNDGYIDYA
Sbjct: 79 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPMNEDELINLIDGVLRDDDKNNDGYIDYA 138
Query: 503 EFAKSLQ 523
EFAKSLQ
Sbjct: 139 EFAKSLQ 145
>ref|XP_001789980.2| PREDICTED: multiple coagulation factor deficiency 2 isoform 1 [Bos
taurus].
Length = 164
Score = 250 bits (638), Expect = 2e-66
Identities = 120/127 (94%), Positives = 124/127 (97%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA+EPGAS SH GS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK
Sbjct: 38 FCAPGARAEEPGASSSHHGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 97
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAPMSEDELINLIDGVLRDDDKNNDGYIDYA 502
MHDYDGNNLLDGLELSTAITHVHKEEG+EQAPM+EDELINLIDGVLRDDDKNNDGYIDYA
Sbjct: 98 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPMNEDELINLIDGVLRDDDKNNDGYIDYA 157
Query: 503 EFAKSLQ 523
EFAKSLQ
Sbjct: 158 EFAKSLQ 164
>ref|XP_002700794.1| PREDICTED: multiple coagulation factor deficiency 2 [Bos taurus].
Length = 145
Score = 250 bits (638), Expect = 2e-66
Identities = 120/127 (94%), Positives = 124/127 (97%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA+EPGAS SH GS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK
Sbjct: 19 FCAPGARAEEPGASSSHHGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 78
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAPMSEDELINLIDGVLRDDDKNNDGYIDYA 502
MHDYDGNNLLDGLELSTAITHVHKEEG+EQAPM+EDELINLIDGVLRDDDKNNDGYIDYA
Sbjct: 79 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPMNEDELINLIDGVLRDDDKNNDGYIDYA 138
Query: 503 EFAKSLQ 523
EFAKSLQ
Sbjct: 139 EFAKSLQ 145
>ref|XP_002691356.1| PREDICTED: multiple coagulation factor deficiency 2 isoform 3 [Bos
taurus].
Length = 93
Score = 190 bits (483), Expect = 2e-48
Identities = 91/93 (97%), Positives = 93/93 (100%)
Frame = +2
Query: 245 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGNEQAPMS 424
MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEG+EQAPM+
Sbjct: 1 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPMN 60
Query: 425 EDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ 523
EDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ
Sbjct: 61 EDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ 93
>ref|XP_002691355.1| PREDICTED: multiple coagulation factor deficiency 2 isoform 2 [Bos
taurus].
Length = 93
Score = 190 bits (483), Expect = 2e-48
Identities = 91/93 (97%), Positives = 93/93 (100%)
Frame = +2
Query: 245 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGNEQAPMS 424
MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEG+EQAPM+
Sbjct: 1 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPMN 60
Query: 425 EDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ 523
EDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ
Sbjct: 61 EDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ 93
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,708,304
Number of extensions: 1072150
Number of successful extensions: 3133
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3124
Number of HSP's successfully gapped: 12
Length of query: 408
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,207,134
Effective search space: 4304761602
Effective search space used: 4304761602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008886
(1225 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531811.1| PREDICTED: similar to multiple coagulation fact... 241 1e-63
>ref|XP_531811.1| PREDICTED: similar to multiple coagulation factor deficiency 2
[Canis familiaris].
Length = 145
Score = 241 bits (615), Expect = 1e-63
Identities = 117/127 (92%), Positives = 120/127 (94%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
F A GA A+EPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK
Sbjct: 19 FRAPGAGAEEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 78
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAPMSEDELINLIDGVLRDDDKNNDGYIDYA 502
MHDYDGNNLLDGLELSTAITHVHKEEG + P+SE ELINLIDGVLRDDDKNNDGYIDYA
Sbjct: 79 MHDYDGNNLLDGLELSTAITHVHKEEGKQAPPVSEAELINLIDGVLRDDDKNNDGYIDYA 138
Query: 503 EFAKSLQ 523
EFAKSLQ
Sbjct: 139 EFAKSLQ 145
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,418,453
Number of extensions: 1095803
Number of successful extensions: 3234
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3222
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 303
Effective length of database: 15,374,224
Effective search space: 4658389872
Effective search space used: 4658389872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008886
(1225 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,052,456
Number of extensions: 683420
Number of successful extensions: 2081
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2077
Number of HSP's successfully gapped: 0
Length of query: 408
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,829,335
Effective search space: 2710605845
Effective search space used: 2710605845
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008886
(1225 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_789778.1| multiple coagulation factor deficiency protein ... 223 3e-58
Alignment gi|NP_647456.1| multiple coagulation factor deficiency protein ... 223 3e-58
>ref|NP_789778.1| multiple coagulation factor deficiency protein 2 homolog [Mus
musculus].
Length = 145
Score = 223 bits (567), Expect = 3e-58
Identities = 110/128 (85%), Positives = 119/128 (92%), Gaps = 1/128 (0%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA + GA H GSVGLDK+TVHDQEHIMEHLEGVI++PEAEMSPQELQLHYFK
Sbjct: 19 FCAPGARAHDHGADVHH-GSVGLDKSTVHDQEHIMEHLEGVIDQPEAEMSPQELQLHYFK 77
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAP-MSEDELINLIDGVLRDDDKNNDGYIDY 499
MHDYDGN+LLDGLELS AITHVHKEEG+EQAP MSEDEL+++IDGVLRDDDKNNDGYIDY
Sbjct: 78 MHDYDGNSLLDGLELSIAITHVHKEEGSEQAPVMSEDELVSIIDGVLRDDDKNNDGYIDY 137
Query: 500 AEFAKSLQ 523
AEFAKSLQ
Sbjct: 138 AEFAKSLQ 145
>ref|NP_647456.1| multiple coagulation factor deficiency protein 2 homolog [Mus
musculus].
Length = 145
Score = 223 bits (567), Expect = 3e-58
Identities = 110/128 (85%), Positives = 119/128 (92%), Gaps = 1/128 (0%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA + GA H GSVGLDK+TVHDQEHIMEHLEGVI++PEAEMSPQELQLHYFK
Sbjct: 19 FCAPGARAHDHGADVHH-GSVGLDKSTVHDQEHIMEHLEGVIDQPEAEMSPQELQLHYFK 77
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAP-MSEDELINLIDGVLRDDDKNNDGYIDY 499
MHDYDGN+LLDGLELS AITHVHKEEG+EQAP MSEDEL+++IDGVLRDDDKNNDGYIDY
Sbjct: 78 MHDYDGNSLLDGLELSIAITHVHKEEGSEQAPVMSEDELVSIIDGVLRDDDKNNDGYIDY 137
Query: 500 AEFAKSLQ 523
AEFAKSLQ
Sbjct: 138 AEFAKSLQ 145
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,297,583
Number of extensions: 930139
Number of successful extensions: 2887
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2877
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 304
Effective length of database: 12,493,815
Effective search space: 3798119760
Effective search space used: 3798119760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008886
(1225 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001164979.1| multiple coagulation factor deficiency prote... 247 2e-65
Alignment gi|NP_001164978.1| multiple coagulation factor deficiency prote... 247 2e-65
Alignment gi|NP_001164977.1| multiple coagulation factor deficiency prote... 247 2e-65
Alignment gi|NP_644808.1| multiple coagulation factor deficiency protein ... 247 2e-65
Alignment gi|NP_001164982.1| multiple coagulation factor deficiency prote... 191 2e-48
Alignment gi|NP_001164981.1| multiple coagulation factor deficiency prote... 186 4e-47
Alignment gi|NP_001164980.1| multiple coagulation factor deficiency prote... 186 4e-47
>ref|NP_001164979.1| multiple coagulation factor deficiency protein 2 isoform A
precursor [Homo sapiens].
Length = 146
Score = 247 bits (630), Expect = 2e-65
Identities = 120/128 (93%), Positives = 124/128 (96%), Gaps = 1/128 (0%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA+EP ASFS PGS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK
Sbjct: 19 FCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 78
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAP-MSEDELINLIDGVLRDDDKNNDGYIDY 499
MHDYDGNNLLDGLELSTAITHVHKEEG+EQAP MSEDELIN+IDGVLRDDDKNNDGYIDY
Sbjct: 79 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDY 138
Query: 500 AEFAKSLQ 523
AEFAKSLQ
Sbjct: 139 AEFAKSLQ 146
>ref|NP_001164978.1| multiple coagulation factor deficiency protein 2 isoform A
precursor [Homo sapiens].
Length = 146
Score = 247 bits (630), Expect = 2e-65
Identities = 120/128 (93%), Positives = 124/128 (96%), Gaps = 1/128 (0%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA+EP ASFS PGS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK
Sbjct: 19 FCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 78
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAP-MSEDELINLIDGVLRDDDKNNDGYIDY 499
MHDYDGNNLLDGLELSTAITHVHKEEG+EQAP MSEDELIN+IDGVLRDDDKNNDGYIDY
Sbjct: 79 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDY 138
Query: 500 AEFAKSLQ 523
AEFAKSLQ
Sbjct: 139 AEFAKSLQ 146
>ref|NP_001164977.1| multiple coagulation factor deficiency protein 2 isoform A
precursor [Homo sapiens].
Length = 146
Score = 247 bits (630), Expect = 2e-65
Identities = 120/128 (93%), Positives = 124/128 (96%), Gaps = 1/128 (0%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA+EP ASFS PGS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK
Sbjct: 19 FCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 78
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAP-MSEDELINLIDGVLRDDDKNNDGYIDY 499
MHDYDGNNLLDGLELSTAITHVHKEEG+EQAP MSEDELIN+IDGVLRDDDKNNDGYIDY
Sbjct: 79 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDY 138
Query: 500 AEFAKSLQ 523
AEFAKSLQ
Sbjct: 139 AEFAKSLQ 146
>ref|NP_644808.1| multiple coagulation factor deficiency protein 2 isoform A
precursor [Homo sapiens].
Length = 146
Score = 247 bits (630), Expect = 2e-65
Identities = 120/128 (93%), Positives = 124/128 (96%), Gaps = 1/128 (0%)
Frame = +2
Query: 143 FCASGARAKEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 322
FCA GARA+EP ASFS PGS+GLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK
Sbjct: 19 FCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFK 78
Query: 323 MHDYDGNNLLDGLELSTAITHVHKEEGNEQAP-MSEDELINLIDGVLRDDDKNNDGYIDY 499
MHDYDGNNLLDGLELSTAITHVHKEEG+EQAP MSEDELIN+IDGVLRDDDKNNDGYIDY
Sbjct: 79 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDY 138
Query: 500 AEFAKSLQ 523
AEFAKSLQ
Sbjct: 139 AEFAKSLQ 146
>ref|NP_001164982.1| multiple coagulation factor deficiency protein 2 isoform C [Homo
sapiens].
Length = 127
Score = 191 bits (484), Expect = 2e-48
Identities = 93/96 (96%), Positives = 95/96 (98%), Gaps = 1/96 (1%)
Frame = +2
Query: 239 HIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGNEQAP 418
HIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEG+EQAP
Sbjct: 32 HIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAP 91
Query: 419 -MSEDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ 523
MSEDELIN+IDGVLRDDDKNNDGYIDYAEFAKSLQ
Sbjct: 92 LMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSLQ 127
>ref|NP_001164981.1| multiple coagulation factor deficiency protein 2 isoform B [Homo
sapiens].
Length = 94
Score = 186 bits (472), Expect = 4e-47
Identities = 91/94 (96%), Positives = 93/94 (98%), Gaps = 1/94 (1%)
Frame = +2
Query: 245 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGNEQAP-M 421
MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEG+EQAP M
Sbjct: 1 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLM 60
Query: 422 SEDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ 523
SEDELIN+IDGVLRDDDKNNDGYIDYAEFAKSLQ
Sbjct: 61 SEDELINIIDGVLRDDDKNNDGYIDYAEFAKSLQ 94
>ref|NP_001164980.1| multiple coagulation factor deficiency protein 2 isoform B [Homo
sapiens].
Length = 94
Score = 186 bits (472), Expect = 4e-47
Identities = 91/94 (96%), Positives = 93/94 (98%), Gaps = 1/94 (1%)
Frame = +2
Query: 245 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGNEQAP-M 421
MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEG+EQAP M
Sbjct: 1 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLM 60
Query: 422 SEDELINLIDGVLRDDDKNNDGYIDYAEFAKSLQ 523
SEDELIN+IDGVLRDDDKNNDGYIDYAEFAKSLQ
Sbjct: 61 SEDELINIIDGVLRDDDKNNDGYIDYAEFAKSLQ 94
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,875,804
Number of extensions: 1093231
Number of successful extensions: 3180
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3167
Number of HSP's successfully gapped: 7
Length of query: 408
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,835,944
Effective search space: 4495291032
Effective search space used: 4495291032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008886
(1225 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1552 0.0
gb|JH118666.1| Sus scrofa unplaced genomic scaffold ChrUScaf1552 186 2e-44
Sscrofa_Chr14 186 2e-44
Sscrofa_Chr05 115 6e-23
>Sscrofa_Chr03
|| Length = 144787322
Score = 1552 bits (783), Expect = 0.0
Identities = 815/830 (98%)
Strand = Plus / Plus
Query: 396 aggaagggaatgagcaggcaccaatgagtgaagatgaactgatcaacctaatagatggtg 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99717627 aggaagggaatgagcaggcaccaatgagtgaagatgaactgatcaacctaatagatggtg 99717686
Query: 456 tcttgagagatgatgacaagaacaacgacggatacatcgactatgccgagttcgcaaaat 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99717687 tcttgagagatgatgacaagaacaacgacggatacatcgactatgccgagttcgcaaaat 99717746
Query: 516 cactgcaataggcataatgtggcgatctcctagtctgatgcaaatgtgacccgttataat 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99717747 cactgcaataggcataatgtggcgatctcctagtctgatgcaaatgtgacccgttataat 99717806
Query: 576 gtgatcacacactttcgataatgcaagataactcctttcgaaaatactgcagtagcagta 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99717807 gtgatcacacactttcgataatgcaagataactcctttcgaaaatactgcagtagcagta 99717866
Query: 636 tttgtaaaaacctgtagcagtttgttacactggtgtgagaaagagaattcaagagaaatt 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99717867 tttgtaaaaacctgtagcagtttgttacactggtgtgagaaagagaattcaagagaaatt 99717926
Query: 696 aaagagcggagaaatgggacacactgtagtccccaagtactgttaaatctctcactggac 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99717927 aaagagcggagaaatgggacacactgtagtccccaagtactgttaaatctctcactggac 99717986
Query: 756 aagggcttgattatgaagaattcttttaagaaaattggatgaggggagctgagcactcag 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99717987 aagggcttgattatgaagaattcttttaagaaaattggatgaggggagctgagcactcag 99718046
Query: 816 gaatgtgactgaataatactgccaggatcttggttttaatgcaggctgtctgaaaacagg 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99718047 gaatgtgactgaataatactgccaggatcttggttttaatgcaggctgtctgaaaacagg 99718106
Query: 876 accaggtctgctaactggacatacttttcagtaacaatgaagggacggaatgaatgccaa 935
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 99718107 accaggtctgctaactggacatacttttcagtaacaatgaagggacagaatgaatgccaa 99718166
Query: 936 gtgtttcccctagtgggtcatgtctcttcagggaaaggtggtgagtgttctgtgaagtgc 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99718167 gtgtttcccctagtgggtcatgtctcttcagggaaaggtggtgagtgttctgtgaagtgc 99718226
Query: 996 ctctggcctagatgcttccttgttctggccaaggaagtatttattaagctatttccaagc 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99718227 ctctggcctagatgcttccttgttctggccaaggaagtatttattaagctatttccaagc 99718286
Query: 1056 cacagcatcagaagaatgtcaaagactgggttcagtcagccaccgagtctgagattctgt 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99718287 cacagcatcagaagaatgtcaaagactgggttcagtcagccaccgagtctgagattctgt 99718346
Query: 1116 atctcctggcactttggaaacagtacaccactgaccgacgtgagtcacnnnnnnnnnnnn 1175
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99718347 atctcctggcactttggaaacagtacaccactgaccgacgtgagtcacttttttagtttt 99718406
Query: 1176 ncactcttttatagaactactgccacatcctgacactttcttgtgtcttc 1225
||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 99718407 tcactcttttatagaactactgccacatcctgacaccttcttgtgtcttc 99718456
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 238 gcatatcatggagcatctagaaggtgtcatcaacaaaccagaggcggagatgtccccaca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99715503 gcatatcatggagcatctagaaggtgtcatcaacaaaccagaggcggagatgtccccaca 99715562
Query: 298 agaactgcagctccattacttcaaaatgcatgattatgacggcaataatttgctcgatgg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99715563 agaactgcagctccattacttcaaaatgcatgattatgacggcaataatttgctcgatgg 99715622
Query: 358 cctggaactctccacagccatcactcatgtccataaggagg 398
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 99715623 cctggaactctccacagccatcactcatgtccataaggagg 99715663
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 85 ggtactggtgaccatgagatctctgtggctgctcttcctgtggggcctgctctggacctt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99714301 ggtactggtgaccatgagatctctgtggctgctcttcctgtggggcctgctctggacctt 99714360
Query: 145 ttgtgcctcgggggccagggccaaggagcccggtgccagcttctcgcatcccggcagcgt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99714361 ttgtgcctcgggggccagggccaaggagcccggtgccagcttctcgcatcccggcagcgt 99714420
Query: 205 gggcctggataagaacacagtgcacgaccaagag 238
||||||||||||||||||||||||||||||||||
Sbjct: 99714421 gggcctggataagaacacagtgcacgaccaagag 99714454
>gb|JH118666.1| Sus scrofa unplaced genomic scaffold ChrUScaf1552
Length = 55440
Score = 186 bits (94), Expect = 2e-44
Identities = 255/305 (83%), Gaps = 9/305 (2%)
Strand = Plus / Plus
Query: 158 gccagggccaaggagcccggtgccagcttctcgcatcccggcagcgtgggcctggataag 217
||||||||||||| | | || |||||||| || ||||| | ||||||||| |||||||||
Sbjct: 4105 gccagggccaaggtggcaggagccagcttatcccatcctg-cagcgtgggtctggataag 4163
Query: 218 aacacagtgcacgaccaagagcatatcatggagcatctagaaggtgtcatcaacaaacca 277
|||||| |||| || ||||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 4164 aacacaatgcaggatcaagagcatatcacggagcatccagaaggtggcactgacaaacca 4223
Query: 278 gaggcggagatgtccccacaagaactgcagctccattacttcaaaatgcatgattatgac 337
|||| ||| ||| || |||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 4224 gaggttgagctgttcctacaagaactgcagctccactatttcaaaatgca--attatgac 4281
Query: 338 ggca---ataatttgctcgatggcctggaactctccacagccatcactcatgtccataag 394
||| || ||||||| | ||| || |||||||||||||||||| ||||||||||| ||
Sbjct: 4282 agcaatcatcatttgcttggtggtctagaactctccacagccatcgctcatgtccatgag 4341
Query: 395 gaggaagggaatgagcag---gcaccaatgagtgaagatgaactgatcaacctaatagat 451
||| |||| ||||| || |||||| ||| |||||||||||||||||| |||| |||
Sbjct: 4342 gagaaaggaaatgaagagacaccaccaaggagggaagatgaactgatcaacttaatggat 4401
Query: 452 ggtgt 456
|||||
Sbjct: 4402 ggtgt 4406
Score = 137 bits (69), Expect = 2e-29
Identities = 251/304 (82%), Gaps = 7/304 (2%)
Strand = Plus / Plus
Query: 703 ggagaaatgggacacactgtagtccccaagtactgttaaatctctcactggacaagggct 762
|||||||||||||| | || ||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 4622 ggagaaatgggacata-tgcagtccccaagtactgttaaatctcttattggacaagg-ct 4679
Query: 763 tgattatgaagaattcttttaagaaaattggatgaggggagctgagcactcaggaatgtg 822
||||| |||||| |||||||||| ||| ||| | ||||||||||||| |||| |
Sbjct: 4680 tgattc--aagaatccttttaagaatattagataactggagctgagcacttgggaactta 4737
Query: 823 actgaataatactgccaggatcttggttttaatgcaggctgtctgaaaac-aggaccagg 881
|||||||| ||| |||| | ||||| ||||||| || ||| ||||||| | ||||||
Sbjct: 4738 actgaata-tacagccaagctcttgcttttaattcatgctacctgaaaagtaagaccagc 4796
Query: 882 tctgctaactggacatacttttcagtaacaatgaagggacggaatgaatgccaagtgttt 941
| ||||||| | ||| |||||||||||||| ||||| | |||||||| ||||| |||||
Sbjct: 4797 tttgctaacagaacacacttttcagtaacagggaaggaatggaatgaaggccaaatgttt 4856
Query: 942 cccctagtgggtcatgtctcttcagggaaaggtggtgagtgttctgtgaagtgcctctgg 1001
| ||| |||||||||||| |||||||| ||| |||| ||| |||||| |||| || ||||
Sbjct: 4857 ctcctggtgggtcatgtcacttcaggg-aagctggttagtattctgtaaagttcccctgg 4915
Query: 1002 ccta 1005
||||
Sbjct: 4916 ccta 4919
>Sscrofa_Chr14
|| Length = 153851969
Score = 186 bits (94), Expect = 2e-44
Identities = 255/305 (83%), Gaps = 9/305 (2%)
Strand = Plus / Plus
Query: 158 gccagggccaaggagcccggtgccagcttctcgcatcccggcagcgtgggcctggataag 217
||||||||||||| | | || |||||||| || ||||| | ||||||||| |||||||||
Sbjct: 116369767 gccagggccaaggtggcaggagccagcttatcccatcctg-cagcgtgggtctggataag 116369825
Query: 218 aacacagtgcacgaccaagagcatatcatggagcatctagaaggtgtcatcaacaaacca 277
|||||| |||| || ||||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 116369826 aacacaatgcaggatcaagagcatatcacggagcatccagaaggtggcactgacaaacca 116369885
Query: 278 gaggcggagatgtccccacaagaactgcagctccattacttcaaaatgcatgattatgac 337
|||| ||| ||| || |||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 116369886 gaggttgagctgttcctacaagaactgcagctccactatttcaaaatgca--attatgac 116369943
Query: 338 ggca---ataatttgctcgatggcctggaactctccacagccatcactcatgtccataag 394
||| || ||||||| | ||| || |||||||||||||||||| ||||||||||| ||
Sbjct: 116369944 agcaatcatcatttgcttggtggtctagaactctccacagccatcgctcatgtccatgag 116370003
Query: 395 gaggaagggaatgagcag---gcaccaatgagtgaagatgaactgatcaacctaatagat 451
||| |||| ||||| || |||||| ||| |||||||||||||||||| |||| |||
Sbjct: 116370004 gagaaaggaaatgaagagacaccaccaaggagggaagatgaactgatcaacttaatggat 116370063
Query: 452 ggtgt 456
|||||
Sbjct: 116370064 ggtgt 116370068
Score = 137 bits (69), Expect = 2e-29
Identities = 251/304 (82%), Gaps = 7/304 (2%)
Strand = Plus / Plus
Query: 703 ggagaaatgggacacactgtagtccccaagtactgttaaatctctcactggacaagggct 762
|||||||||||||| | || ||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 116370284 ggagaaatgggacata-tgcagtccccaagtactgttaaatctcttattggacaagg-ct 116370341
Query: 763 tgattatgaagaattcttttaagaaaattggatgaggggagctgagcactcaggaatgtg 822
||||| |||||| |||||||||| ||| ||| | ||||||||||||| |||| |
Sbjct: 116370342 tgattc--aagaatccttttaagaatattagataactggagctgagcacttgggaactta 116370399
Query: 823 actgaataatactgccaggatcttggttttaatgcaggctgtctgaaaac-aggaccagg 881
|||||||| ||| |||| | ||||| ||||||| || ||| ||||||| | ||||||
Sbjct: 116370400 actgaata-tacagccaagctcttgcttttaattcatgctacctgaaaagtaagaccagc 116370458
Query: 882 tctgctaactggacatacttttcagtaacaatgaagggacggaatgaatgccaagtgttt 941
| ||||||| | ||| |||||||||||||| ||||| | |||||||| ||||| |||||
Sbjct: 116370459 tttgctaacagaacacacttttcagtaacagggaaggaatggaatgaaggccaaatgttt 116370518
Query: 942 cccctagtgggtcatgtctcttcagggaaaggtggtgagtgttctgtgaagtgcctctgg 1001
| ||| |||||||||||| |||||||| ||| |||| ||| |||||| |||| || ||||
Sbjct: 116370519 ctcctggtgggtcatgtcacttcaggg-aagctggttagtattctgtaaagttcccctgg 116370577
Query: 1002 ccta 1005
||||
Sbjct: 116370578 ccta 116370581
>Sscrofa_Chr05
|| Length = 111506441
Score = 115 bits (58), Expect = 6e-23
Identities = 70/74 (94%)
Strand = Plus / Minus
Query: 262 tgtcatcaacaaaccagaggcggagatgtccccacaagaactgcagctccattacttcaa 321
|||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1237283 tgtcgtcaacaaaccagaggcagagatgtccccacaataactgcagctccattacttcaa 1237224
Query: 322 aatgcatgattatg 335
|||||| |||||||
Sbjct: 1237223 aatgcaggattatg 1237210
Score = 115 bits (58), Expect = 6e-23
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 262 tgtcatcaacaaaccagaggcggagatgtccccacaagaactgcagctccattacttcaa 321
|||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1347064 tgtcgtcaacaaaccagaggcagagatgtccccacaataactgcagctccattacttcaa 1347123
Query: 322 aatgcatgattatg 335
|||||| |||||||
Sbjct: 1347124 aatgcaggattatg 1347137
Score = 115 bits (58), Expect = 6e-23
Identities = 70/74 (94%)
Strand = Plus / Minus
Query: 262 tgtcatcaacaaaccagaggcggagatgtccccacaagaactgcagctccattacttcaa 321
|||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1422413 tgtcgtcaacaaaccagaggcagagatgtccccacaataactgcagctccattacttcaa 1422354
Query: 322 aatgcatgattatg 335
|||||| |||||||
Sbjct: 1422353 aatgcaggattatg 1422340
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,911,505
Number of extensions: 209
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 11
Length of query: 1225
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1204
Effective length of database: 2,808,413,156
Effective search space: 3381329439824
Effective search space used: 3381329439824
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)