Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008887
(1508 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039343.1| glycine amidinotransferase, mitochondrial pr... 843 0.0
>ref|NP_001039343.1| glycine amidinotransferase, mitochondrial precursor [Bos taurus].
Length = 423
Score = 843 bits (2177), Expect = 0.0
Identities = 400/423 (94%), Positives = 409/423 (96%)
Frame = +3
Query: 90 MLRVRCLRGGSRGAEALHYIGSRLGRTVTGWVQRTFQSTQAATASSGNSCAADDKATDPL 269
MLRVRCLRGGSRGAEALHYIGSRLGRTVTGWVQRTFQSTQAATASS NSCAADDKATDPL
Sbjct: 1 MLRVRCLRGGSRGAEALHYIGSRLGRTVTGWVQRTFQSTQAATASSRNSCAADDKATDPL 60
Query: 270 PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKYGGHYFPKDHL 449
PKDCPVSS+NEWDPLEEVIVGRAENACVPPFTVEVKANTY+K+WPFYQKYGG YFPKDHL
Sbjct: 61 PKDCPVSSFNEWDPLEEVIVGRAENACVPPFTVEVKANTYDKHWPFYQKYGGSYFPKDHL 120
Query: 450 KKAVAEIEEMCNILKMEGVTVRRPDPIDWSVKYKTPDFESTGLYGAMPRDILIVVGNEII 629
+KAVAEIEEMCNILKMEGVTVRRPDPIDWS+KYKTPDFESTGLYGAMPRDILIVVGNEII
Sbjct: 121 QKAVAEIEEMCNILKMEGVTVRRPDPIDWSLKYKTPDFESTGLYGAMPRDILIVVGNEII 180
Query: 630 EAPMAWRARFFEYRAYRSIIKDYFRRGAKWTTAPKPTMADELYDQDYPIYSVEDRHKLAA 809
EAPMAWRARFFEYRAYR+IIKDYFRRGAKWTTAPKPTMADELYDQDYPI+SVEDRHKLAA
Sbjct: 181 EAPMAWRARFFEYRAYRTIIKDYFRRGAKWTTAPKPTMADELYDQDYPIHSVEDRHKLAA 240
Query: 810 QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYMGIEWMRKHLAPDYRVHIISFKDPN 989
QGKFVTTEFEPCFDAADFIRAGRDIF QRSQVTNYMGIEWMRKHLAPDYRVHI+SFKDPN
Sbjct: 241 QGKFVTTEFEPCFDAADFIRAGRDIFVQRSQVTNYMGIEWMRKHLAPDYRVHIVSFKDPN 300
Query: 990 PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWXXXXXXXXXXXDDHPLWMSSKWLSM 1169
PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGW DDHPLWMSSKWLSM
Sbjct: 301 PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTIVTPPTPIIPDDHPLWMSSKWLSM 360
Query: 1170 NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKISIRNANSLGGGFHCWTCDVRRRGTLQS 1349
NVLMLDEKRVMVDANEVPIQKMFEKLGISTIK+SIRNANSLGGGFHCWTCDVRRRGTLQS
Sbjct: 361 NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVSIRNANSLGGGFHCWTCDVRRRGTLQS 420
Query: 1350 YFD 1358
YFD
Sbjct: 421 YFD 423
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,062,891
Number of extensions: 1524845
Number of successful extensions: 4450
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4449
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 396
Effective length of database: 14,174,046
Effective search space: 5612922216
Effective search space used: 5612922216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008887
(1508 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544663.2| PREDICTED: similar to Glycine amidinotransferas... 838 0.0
>ref|XP_544663.2| PREDICTED: similar to Glycine amidinotransferase, mitochondrial
precursor (L-arginine:glycine amidinotransferase)
(Transamidinase) (AT) [Canis familiaris].
Length = 423
Score = 838 bits (2166), Expect = 0.0
Identities = 397/423 (93%), Positives = 408/423 (96%)
Frame = +3
Query: 90 MLRVRCLRGGSRGAEALHYIGSRLGRTVTGWVQRTFQSTQAATASSGNSCAADDKATDPL 269
MLRVRCLRGGSRGAEA+HYIGSRLGRT+TGWVQRTFQSTQAATASS NSCAADDKATDPL
Sbjct: 1 MLRVRCLRGGSRGAEAVHYIGSRLGRTLTGWVQRTFQSTQAATASSRNSCAADDKATDPL 60
Query: 270 PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKYGGHYFPKDHL 449
PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQK+GGHYFPKDHL
Sbjct: 61 PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKHGGHYFPKDHL 120
Query: 450 KKAVAEIEEMCNILKMEGVTVRRPDPIDWSVKYKTPDFESTGLYGAMPRDILIVVGNEII 629
KKAVAEIEEMCNILK EGVTVRRPDPIDWS+KYKTPDFESTGLYGAMPRDILIVVGNEII
Sbjct: 121 KKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYGAMPRDILIVVGNEII 180
Query: 630 EAPMAWRARFFEYRAYRSIIKDYFRRGAKWTTAPKPTMADELYDQDYPIYSVEDRHKLAA 809
EAPMAWRARFFEYRAYRSIIKDYF RGAKWTTAPKPTM D+LYDQ+YPI+SVEDRHKLAA
Sbjct: 181 EAPMAWRARFFEYRAYRSIIKDYFHRGAKWTTAPKPTMGDKLYDQNYPIHSVEDRHKLAA 240
Query: 810 QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYMGIEWMRKHLAPDYRVHIISFKDPN 989
QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNY+GIEWMR+HLAPDYRVHIISFKDPN
Sbjct: 241 QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPN 300
Query: 990 PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWXXXXXXXXXXXDDHPLWMSSKWLSM 1169
PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGW DDHPLWMSSKWLSM
Sbjct: 301 PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTIVTPPIPVIPDDHPLWMSSKWLSM 360
Query: 1170 NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKISIRNANSLGGGFHCWTCDVRRRGTLQS 1349
NVLMLDEKRVMVDANEVPIQKMFEKLGISTIK++IRNANSLGGGFHCWTCDVRRRGTLQS
Sbjct: 361 NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNANSLGGGFHCWTCDVRRRGTLQS 420
Query: 1350 YFD 1358
YFD
Sbjct: 421 YFD 423
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,699,464
Number of extensions: 1572316
Number of successful extensions: 4665
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4664
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 395
Effective length of database: 15,307,552
Effective search space: 6046483040
Effective search space used: 6046483040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008887
(1508 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121914.1| glycine amidinotransferase, mitochondrial [S... 862 0.0
>ref|NP_001121914.1| glycine amidinotransferase, mitochondrial [Sus scrofa].
Length = 423
Score = 862 bits (2227), Expect = 0.0
Identities = 412/423 (97%), Positives = 412/423 (97%)
Frame = +3
Query: 90 MLRVRCLRGGSRGAEALHYIGSRLGRTVTGWVQRTFQSTQAATASSGNSCAADDKATDPL 269
MLRVRCLRGGSRGAEALHYIGSRLGRTVTGWVQRTFQSTQAATASSGNSCAADDKATDPL
Sbjct: 1 MLRVRCLRGGSRGAEALHYIGSRLGRTVTGWVQRTFQSTQAATASSGNSCAADDKATDPL 60
Query: 270 PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKYGGHYFPKDHL 449
PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKYGGHYFPKDHL
Sbjct: 61 PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKYGGHYFPKDHL 120
Query: 450 KKAVAEIEEMCNILKMEGVTVRRPDPIDWSVKYKTPDFESTGLYGAMPRDILIVVGNEII 629
KKAVAEIEEMCNILKMEGVTVRRPDPIDWSVKYKTPDFESTGLYGAMPRDILIVVGNEII
Sbjct: 121 KKAVAEIEEMCNILKMEGVTVRRPDPIDWSVKYKTPDFESTGLYGAMPRDILIVVGNEII 180
Query: 630 EAPMAWRARFFEYRAYRSIIKDYFRRGAKWTTAPKPTMADELYDQDYPIYSVEDRHKLAA 809
EAPMAWRARFFEYRAYRSIIKDYFRRGAKWTTAPKPTMADELYDQDYPIYSVEDRHKLAA
Sbjct: 181 EAPMAWRARFFEYRAYRSIIKDYFRRGAKWTTAPKPTMADELYDQDYPIYSVEDRHKLAA 240
Query: 810 QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYMGIEWMRKHLAPDYRVHIISFKDPN 989
QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYMGIEWMRKHLAPDYRVHIISFKDPN
Sbjct: 241 QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYMGIEWMRKHLAPDYRVHIISFKDPN 300
Query: 990 PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWXXXXXXXXXXXDDHPLWMSSKWLSM 1169
PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGW DDHPLWMSSKWLSM
Sbjct: 301 PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTIVTPPIPVIPDDHPLWMSSKWLSM 360
Query: 1170 NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKISIRNANSLGGGFHCWTCDVRRRGTLQS 1349
NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKISIRNANSLGGGFHCWTCDVRRRGTLQS
Sbjct: 361 NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKISIRNANSLGGGFHCWTCDVRRRGTLQS 420
Query: 1350 YFD 1358
YFD
Sbjct: 421 YFD 423
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,396,839
Number of extensions: 974607
Number of successful extensions: 2868
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2866
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 399
Effective length of database: 8,779,541
Effective search space: 3503036859
Effective search space used: 3503036859
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008887
(1508 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080237.1| glycine amidinotransferase, mitochondrial precu... 823 0.0
>ref|NP_080237.1| glycine amidinotransferase, mitochondrial precursor [Mus musculus].
Length = 423
Score = 823 bits (2125), Expect = 0.0
Identities = 390/423 (92%), Positives = 404/423 (95%)
Frame = +3
Query: 90 MLRVRCLRGGSRGAEALHYIGSRLGRTVTGWVQRTFQSTQAATASSGNSCAADDKATDPL 269
MLRVRCLRGGSRGAEA+HYIGSRLG ++TGWVQRTFQSTQAATASS NSCAA+DKAT PL
Sbjct: 1 MLRVRCLRGGSRGAEAVHYIGSRLGGSLTGWVQRTFQSTQAATASSRNSCAAEDKATHPL 60
Query: 270 PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKYGGHYFPKDHL 449
PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQK GG YFPKDHL
Sbjct: 61 PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKNGGLYFPKDHL 120
Query: 450 KKAVAEIEEMCNILKMEGVTVRRPDPIDWSVKYKTPDFESTGLYGAMPRDILIVVGNEII 629
KKAVAE+EEMCNIL MEGVTVRRPDPIDWS+KYKTPDFESTGLY AMPRDIL+VVGNEII
Sbjct: 121 KKAVAEVEEMCNILSMEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILMVVGNEII 180
Query: 630 EAPMAWRARFFEYRAYRSIIKDYFRRGAKWTTAPKPTMADELYDQDYPIYSVEDRHKLAA 809
EAPMAWR+RFFEYRAYRSIIKDYF RGAKWTTAPKPTMADELYDQ+YPI+SVEDRHKLAA
Sbjct: 181 EAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYDQNYPIHSVEDRHKLAA 240
Query: 810 QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYMGIEWMRKHLAPDYRVHIISFKDPN 989
QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNY+GIEWMR+HLAPDYRVHIISFKDPN
Sbjct: 241 QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPN 300
Query: 990 PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWXXXXXXXXXXXDDHPLWMSSKWLSM 1169
PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGW DDHPLWMSSKWLSM
Sbjct: 301 PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTIVTPPTPVIPDDHPLWMSSKWLSM 360
Query: 1170 NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKISIRNANSLGGGFHCWTCDVRRRGTLQS 1349
NVLMLDEKRVMVDANEVPIQKMFEKLGISTIK++IRNANSLGGGFHCWTCDVRRRGTLQS
Sbjct: 361 NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNANSLGGGFHCWTCDVRRRGTLQS 420
Query: 1350 YFD 1358
YFD
Sbjct: 421 YFD 423
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,542,892
Number of extensions: 1306459
Number of successful extensions: 3843
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3839
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 396
Effective length of database: 12,433,743
Effective search space: 4923762228
Effective search space used: 4923762228
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008887
(1508 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001473.1| glycine amidinotransferase, mitochondrial precu... 831 0.0
>ref|NP_001473.1| glycine amidinotransferase, mitochondrial precursor [Homo sapiens].
Length = 423
Score = 831 bits (2146), Expect = 0.0
Identities = 392/423 (92%), Positives = 406/423 (95%)
Frame = +3
Query: 90 MLRVRCLRGGSRGAEALHYIGSRLGRTVTGWVQRTFQSTQAATASSGNSCAADDKATDPL 269
MLRVRCLRGGSRGAEA+HYIGSRLGRT+TGWVQRTFQSTQAATASS NSCAADDKAT+PL
Sbjct: 1 MLRVRCLRGGSRGAEAVHYIGSRLGRTLTGWVQRTFQSTQAATASSRNSCAADDKATEPL 60
Query: 270 PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKYGGHYFPKDHL 449
PKDCPVSSYNEWDPLEEVIVGRAENACVPPFT+EVKANTYEKYWPFYQK GGHYFPKDHL
Sbjct: 61 PKDCPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHL 120
Query: 450 KKAVAEIEEMCNILKMEGVTVRRPDPIDWSVKYKTPDFESTGLYGAMPRDILIVVGNEII 629
KKAVAEIEEMCNILK EGVTVRRPDPIDWS+KYKTPDFESTGLY AMPRDILIVVGNEII
Sbjct: 121 KKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEII 180
Query: 630 EAPMAWRARFFEYRAYRSIIKDYFRRGAKWTTAPKPTMADELYDQDYPIYSVEDRHKLAA 809
EAPMAWR+RFFEYRAYRSIIKDYF RGAKWTTAPKPTMADELY+QDYPI+SVEDRHKLAA
Sbjct: 181 EAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAA 240
Query: 810 QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYMGIEWMRKHLAPDYRVHIISFKDPN 989
QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNY+GIEWMR+HLAPDYRVHIISFKDPN
Sbjct: 241 QGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPN 300
Query: 990 PMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWXXXXXXXXXXXDDHPLWMSSKWLSM 1169
PMHIDATFNIIGPG+VLSNPDRPCHQIDLFKKAGW DDHPLWMSSKWLSM
Sbjct: 301 PMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSM 360
Query: 1170 NVLMLDEKRVMVDANEVPIQKMFEKLGISTIKISIRNANSLGGGFHCWTCDVRRRGTLQS 1349
NVLMLDEKRVMVDANEVPIQKMFEKLGI+TIK++IRNANSLGGGFHCWTCDVRRRGTLQS
Sbjct: 361 NVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQS 420
Query: 1350 YFD 1358
Y D
Sbjct: 421 YLD 423
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,583,238
Number of extensions: 1550118
Number of successful extensions: 4666
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4658
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 395
Effective length of database: 14,770,016
Effective search space: 5834156320
Effective search space used: 5834156320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008887
(1508 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 488 e-135
Sscrofa_Chr05 327 1e-86
>Sscrofa_Chr01
|| Length = 315321322
Score = 488 bits (246), Expect = e-135
Identities = 259/262 (98%), Gaps = 1/262 (0%)
Strand = Plus / Minus
Query: 1248 ggtatcagtaccatcaagattagcattcgtaacgccaattctctgggaggaggcttccac 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140846006 ggtatcagtaccatcaagattagcattcgtaacgccaattctctgggaggaggcttccac 140845947
Query: 1308 tgctggacctgcgacgtccggcgccgaggcaccctgcagtcctactttgactgactgggc 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140845946 tgctggacctgcgacgtccggcgccgaggcaccctgcagtcctactttgactgactgggc 140845887
Query: 1368 ctgtgggggcttggggctcagcctcaaataaacttaggaagcttagggataaggttcatt 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140845886 ctgtgggggcttggggctcagcctcaaataaacttaggaagcttagggataaggttcatt 140845827
Query: 1428 ctcctgcttttaaacatgcatgaactttagtgcttt-aacaatcatatccttaatagggg 1486
|||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 140845826 ctcctgctttaaaacatgcatgaactttagtgctttaaacaatcatatctttaatagggg 140845767
Query: 1487 ttttaagtctggtttattttta 1508
||||||||||||||||||||||
Sbjct: 140845766 ttttaagtctggtttattttta 140845745
Score = 438 bits (221), Expect = e-120
Identities = 221/221 (100%)
Strand = Plus / Minus
Query: 158 gcttggaagaactgtaacaggatgggtgcagcgaactttccagagcacccaggcagctac 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140860123 gcttggaagaactgtaacaggatgggtgcagcgaactttccagagcacccaggcagctac 140860064
Query: 218 agcttcctccgggaattcatgtgcagctgatgacaaggccactgatcctctgcccaagga 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140860063 agcttcctccgggaattcatgtgcagctgatgacaaggccactgatcctctgcccaagga 140860004
Query: 278 ctgccctgtctcctcttacaacgaatgggaccccttagaggaagtgatagtgggtcgagc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140860003 ctgccctgtctcctcttacaacgaatgggaccccttagaggaagtgatagtgggtcgagc 140859944
Query: 338 tgaaaatgcctgtgtcccaccattcactgtggaggtgaagg 378
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 140859943 tgaaaatgcctgtgtcccaccattcactgtggaggtgaagg 140859903
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 376 aggccaacacatatgaaaagtactggcctttttaccagaagtatgggggccattattttc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140853844 aggccaacacatatgaaaagtactggcctttttaccagaagtatgggggccattattttc 140853785
Query: 436 ccaaagatcatttgaaaaaggctgttgccgaaattgaagaaatgtgcaatattttaaaaa 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140853784 ccaaagatcatttgaaaaaggctgttgccgaaattgaagaaatgtgcaatattttaaaaa 140853725
Query: 496 tggaaggcgtgacagtgaggaggcctgaccccattgactggtcagtgaagtataaaactc 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140853724 tggaaggcgtgacagtgaggaggcctgaccccattgactggtcagtgaagtataaaactc 140853665
Query: 556 ctgattttgagtctacgggt 575
||||||||||||||||||||
Sbjct: 140853664 ctgattttgagtctacgggt 140853645
Score = 383 bits (193), Expect = e-103
Identities = 193/193 (100%)
Strand = Plus / Minus
Query: 573 ggtttatatggtgcgatgcctcgagacatcctgatcgttgtgggaaatgagattatcgag 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140852631 ggtttatatggtgcgatgcctcgagacatcctgatcgttgtgggaaatgagattatcgag 140852572
Query: 633 gctccaatggcctggcgcgctcgattctttgagtaccgcgcatacagatcgattatcaaa 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140852571 gctccaatggcctggcgcgctcgattctttgagtaccgcgcatacagatcgattatcaaa 140852512
Query: 693 gactacttccgccgtggggccaagtggacaacggctcctaagcccacaatggctgatgag 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140852511 gactacttccgccgtggggccaagtggacaacggctcctaagcccacaatggctgatgag 140852452
Query: 753 ctttatgaccaag 765
|||||||||||||
Sbjct: 140852451 ctttatgaccaag 140852439
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 900 caggttacaaactacatgggcattgaatggatgcgtaagcatctcgctcctgactaccga 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140851192 caggttacaaactacatgggcattgaatggatgcgtaagcatctcgctcctgactaccga 140851133
Query: 960 gtgcacatcatctcctttaaagaccccaatccaatgcacattgatgccaccttcaatatc 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140851132 gtgcacatcatctcctttaaagaccccaatccaatgcacattgatgccaccttcaatatc 140851073
Query: 1020 attgggcctggtcttgtactttccaaccctgaccgaccctgtcaccag 1067
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140851072 attgggcctggtcttgtactttccaaccctgaccgaccctgtcaccag 140851025
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 1 ctccgctgcgggcgcgctctcgggaggcacagggagacgctgccgagcgctgggcactat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140861786 ctccgctgcgggcgcgctctcgggaggcacagggagacgctgccgagcgctgggcactat 140861727
Query: 61 cggctcgtggatcagctgggcgtggggcgatgctgcgggtgcggtgtctgcgcggtggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140861726 cggctcgtggatcagctgggcgtggggcgatgctgcgggtgcggtgtctgcgcggtggaa 140861667
Query: 121 gccgcggtgccgaagcgctgcactacatcgggtcacgg 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 140861666 gccgcggtgccgaagcgctgcactacatcgggtcacgg 140861629
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 765 gattaccccatctattctgtagaagacagacacaaattggctgctcagggaaaatttgtg 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140851466 gattaccccatctattctgtagaagacagacacaaattggctgctcagggaaaatttgtg 140851407
Query: 825 acgactgagttcgagccatgctttgatgctgctgacttcattcgagctggaagagatatc 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140851406 acgactgagttcgagccatgctttgatgctgctgacttcattcgagctggaagagatatc 140851347
Query: 885 tttgcacagagaagccaggtt 905
|||||||||||||||||||||
Sbjct: 140851346 tttgcacagagaagccaggtt 140851326
Score = 242 bits (122), Expect = 5e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 1131 gatcacccactgtggatgtcgtccaagtggctttccatgaatgtcttaatgctggacgaa 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140848863 gatcacccactgtggatgtcgtccaagtggctttccatgaatgtcttaatgctggacgaa 140848804
Query: 1191 aagcgtgttatggtggatgccaacgaggtcccgatccaaaagatgtttgaaaagctgggt 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140848803 aagcgtgttatggtggatgccaacgaggtcccgatccaaaagatgtttgaaaagctgggt 140848744
Query: 1251 at 1252
||
Sbjct: 140848743 at 140848742
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 1065 cagattgatcttttcaagaaagcaggatggaccatagttactcctccaataccagttatc 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140849377 cagattgatcttttcaagaaagcaggatggaccatagttactcctccaataccagttatc 140849318
Query: 1125 ccagatg 1131
|||||||
Sbjct: 140849317 ccagatg 140849311
>Sscrofa_Chr05
|| Length = 111506441
Score = 327 bits (165), Expect = 1e-86
Identities = 526/636 (82%), Gaps = 14/636 (2%)
Strand = Plus / Plus
Query: 541 tgaagtataaaactcctgattttgagtctacgggtttatatggtgcgatgcctcgagaca 600
||||||||||||||||||||||| ||||| |||||| |||||||| ||||||| |||||
Sbjct: 13260829 tgaagtataaaactcctgattttaagtctctgggtttttatggtgcaatgcctcaagaca 13260888
Query: 601 tcctgatcgttgtgggaaatgagattatcgaggctccaatggcctggcgcgctcgattct 660
||||||| | |||||| |||||||||||| || |||| || | ||||| |||| ||||
Sbjct: 13260889 tcctgatagctgtggggaatgagattatcaagactcctgtgacttggcgtgctcacttct 13260948
Query: 661 ttgagtaccgcgcatacagatcgattatcaaagactacttccgc--cgtggggccaagtg 718
||| ||| | ||||||| | |||||||||||||||||| || ||||||||| |||
Sbjct: 13260949 ctgaatactgtacatacagtgcaattatcaaagactacttctgcaaagtggggccaggtg 13261008
Query: 719 gacaacggctcctaagcccacaatggctgatgagctttatgaccaagattaccccatcta 778
|||| | ||||||||| |||||||||| |||| ||||||||||| ||||| |||||
Sbjct: 13261009 gacagtgtctcctaagctcacaatggctaatgacctttatgaccaggattagcccatacc 13261068
Query: 779 ttctgtagaagacagacacaaattggctgctcagggaaaatttgtgacgactgagttcga 838
||||||||||||||| ||||||||||| ||| | ||||||||| |||| |||
Sbjct: 13261069 atctgtagaagacagaaccaaattggctgttca-gaaaaatttgtttaaactggattcct 13261127
Query: 839 gccatgctttgatgctgctgacttcattcgagctggaagagatatctttgcacagaga-a 897
| ||||| |||| ||||||||||||||| | || |||||| ||||| ||||||||||
Sbjct: 13261128 actatgctgtgatactgctgacttcattcaaactagaagagctatctctgcacagagatg 13261187
Query: 898 gccaggttacaaactacatgggcattgaatggatgcgtaagcatctcgctcctgactacc 957
|||||||||||||||| |||||| |||||||||||| |||||||||| |||| ||||||
Sbjct: 13261188 gccaggttacaaactatatgggc-ttgaatggatgcataagcatctcactccagactaca 13261246
Query: 958 gagtgcacatcatctcctttaaagaccccaatccaatgcacattgatgccaccttcaata 1017
| ||||||||||||||||| |||||||| |||||| ||||||||||| |||||||| |
Sbjct: 13261247 gtgtgcacatcatctccttcaaagaccctaatccagtgcacattgataccaccttcca-- 13261304
Query: 1018 tcattgggcctggtcttgtactttccaaccctgaccgaccctgtcaccagattgatcttt 1077
| |||| ||| | | |||||||| || | | || |||||||||| |||||
Sbjct: 13261305 --agtggg--aggtgtcatgctttccaagcc-caacaactgtgtcaccagagcactcttt 13261359
Query: 1078 tcaagaaagcaggatggaccatagttactcctccaataccagttatcccagatgatcac- 1136
||||||||||||||||||||||||||||||||| ||||||||| || ||||||||| ||
Sbjct: 13261360 tcaagaaagcaggatggaccatagttactcctctaataccagtcat-ccagatgataacg 13261418
Query: 1137 ccactgtggatgtcgtccaagtggctttccatgaat 1172
||| | ||||||| ||||||||||||||||||||||
Sbjct: 13261419 ccattctggatgttgtccaagtggctttccatgaat 13261454
Score = 188 bits (95), Expect = 6e-45
Identities = 192/223 (86%), Gaps = 1/223 (0%)
Strand = Plus / Plus
Query: 158 gcttggaagaactgt-aacaggatgggtgcagcgaactttccagagcacccaggcagcta 216
||||||||||||||| |||||||||||||||| |||||||||||| | |||||| |||||
Sbjct: 13260194 gcttggaagaactgttaacaggatgggtgcagtgaactttccagaactcccaggtagcta 13260253
Query: 217 cagcttcctccgggaattcatgtgcagctgatgacaaggccactgatcctctgcccaagg 276
||| ||||||| |||||| | |||||||| |||| | | |||||| |||||||||
Sbjct: 13260254 cagattcctcccagaattcctccgcagctgacgacactgtccaagatcctttgcccaagg 13260313
Query: 277 actgccctgtctcctcttacaacgaatgggaccccttagaggaagtgatagtgggtcgag 336
|| || |||||||| |||||| | ||||||||||||||||||||||||| |||| |||
Sbjct: 13260314 accaccttgtctccttttacaatggatgggaccccttagaggaagtgatattgggcagag 13260373
Query: 337 ctgaaaatgcctgtgtcccaccattcactgtggaggtgaaggc 379
| |||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 13260374 cagaaaatacctgtgttccaccattcactgtggaggtgaaggc 13260416
Score = 184 bits (93), Expect = 9e-44
Identities = 235/281 (83%), Gaps = 1/281 (0%)
Strand = Plus / Plus
Query: 1195 gtgttatggtggatgccaacgaggtcccgatccaaaagatgtttgaaaagctgggtatca 1254
|||| |||||||||| ||| || |||| ||| |||| ||||||||||||| |||||| |
Sbjct: 13261900 gtgtcatggtggatgtcaatgaagtcctgattcaaaggatgtttgaaaagaagggtatta 13261959
Query: 1255 gtaccatcaagattagcattcgtaacgccaattctctgggaggaggcttccactgctgga 1314
||| ||| ||| ||| ||| |||| |||| || ||||||||||||||||||||||||
Sbjct: 13261960 gtatcattaaggttaatatttgtaatgccagctccttgggaggaggcttccactgctgga 13262019
Query: 1315 cctgcgacgtccggcgccgaggcaccctgcagtcctactttgactgactgggcctgtggg 1374
|||| || || ||| |||||||||| ||||||||||||||||||| || ||| ||
Sbjct: 13262020 cctgtgatgtttggcattgaggcaccctacagtcctactttgactgaccaggtctgctgg 13262079
Query: 1375 ggcttggggctcagcctcaaataaacttaggaagcttagggataaggttcattctcctgc 1434
||| |||| | ||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 13262080 ggcatgggacatggcctcaaataaacctaggaagcttagggacaaggttcattctcctgc 13262139
Query: 1435 ttttaaacatgcatgaactttagtgcttt-aacaatcatat 1474
||| ||| ||||||| |||||||||||| |||||||||||
Sbjct: 13262140 tttaaaaagtgcatgacctttagtgctttaaacaatcatat 13262180
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,676,291
Number of extensions: 216
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 15
Length of query: 1508
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1487
Effective length of database: 2,808,413,156
Effective search space: 4176110362972
Effective search space used: 4176110362972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)