Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008891
(1814 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029225.1| prelamin-A/C [Bos taurus]. 820 0.0
Alignment gi|NP_001096765.1| lamin-B1 [Bos taurus]. 473 e-133
Alignment gi|XP_002688997.1| PREDICTED: lamin B2 [Bos taurus]. 464 e-130
Alignment gi|XP_594479.4| PREDICTED: lamin B2 [Bos taurus]. 464 e-130
Alignment gi|NP_001075044.1| desmin [Bos taurus]. 124 2e-28
Alignment gi|NP_001095848.1| peripherin [Bos taurus]. 114 2e-25
Alignment gi|NP_776394.2| vimentin [Bos taurus]. 112 1e-24
Alignment gi|NP_776546.1| neurofilament light polypeptide [Bos taurus]. 101 3e-21
Alignment gi|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide... 100 3e-21
Alignment gi|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [B... 100 3e-21
>ref|NP_001029225.1| prelamin-A/C [Bos taurus].
Length = 572
Score = 820 bits (2119), Expect = 0.0
Identities = 440/535 (82%), Positives = 445/535 (83%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
Sbjct: 1 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 60
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
LRIT GIK+AYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN
Sbjct: 61 LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 120
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
+KKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 121 SKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAK 180
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR
Sbjct: 181 KQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 240
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
LADALQ+LRAQHEDQVEQYKK+LEKTYSAKLDNARQSAERNSNL GAAHEELQQSRIRID
Sbjct: 241 LADALQELRAQHEDQVEQYKKDLEKTYSAKLDNARQSAERNSNLAGAAHEELQQSRIRID 300
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
RDLEDSLARERDTSRRLLADKEREMAEMRARM
Sbjct: 301 SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLADKEREMAEMRARMQQQLDEYQ 360
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRK 1467
IKLALDMEIHAYRK SPSPTSQRSRGRA VTKKRK
Sbjct: 361 ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQSGSSVTKKRK 420
Query: 1468 LXXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 1647
L QHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT
Sbjct: 421 LESTESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 480
Query: 1648 YRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
YRFPPKFTLKAGQVVTIWAAGAGATHSPP DLVWK+QNTWGCGNSLRTALINSTG
Sbjct: 481 YRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTG 535
>ref|NP_001096765.1| lamin-B1 [Bos taurus].
Length = 586
Score = 473 bits (1217), Expect = e-133
Identities = 252/528 (47%), Positives = 344/528 (65%), Gaps = 3/528 (0%)
Frame = +1
Query: 238 RSGAQAS--STPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXX 411
RSG++A +TPLSPTR++RLQEKE+L+ELNDRLAVYID+VRSLETEN+ L+L++T
Sbjct: 10 RSGSRAGGPATPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVTEREE 69
Query: 412 XXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLM 591
G+K+ YE EL DAR+ LD A+ERA+LQ+EL K + E +L KKE DL
Sbjct: 70 VRGRELTGLKALYETELADARRALDDTARERAKLQIELGKFKAEHDQLLLNYAKKESDLN 129
Query: 592 AAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEML 771
AQ +L++ EA LNSK+AAL+TAL +K++LE +L DL+ Q+ QL DE L
Sbjct: 130 GAQIKLREYEAALNSKDAALATALGDKKSLESDLEDLKDQIAQLEASLAAAKKQLADETL 189
Query: 772 RRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDL 951
+VD ENR Q+L E+L+F+KN+Y EE+ ET+R+HETRLVE+D+G+Q E+E +LA AL ++
Sbjct: 190 LKVDLENRCQSLTEDLEFRKNMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEM 249
Query: 952 RAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXX 1131
R QH+ QV+ YK+ELE+TY AKL+NAR S+E N++ V +A EEL +SR+RI+
Sbjct: 250 REQHDAQVKLYKEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIESLSSQLSN 309
Query: 1132 XXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLA 1311
++LED LA+ERD SRR+L+DKEREMAE+R +M +KLA
Sbjct: 310 LQKESRACLERIQELEDLLAKERDNSRRMLSDKEREMAEIRDQMQQQLNDYEQLLDVKLA 369
Query: 1312 LDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRKLXXXXXXX 1491
LDMEI AYRK SPSP+S+ + RA +
Sbjct: 370 LDMEISAYRKLLEGEEERLKLSPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSS 429
Query: 1492 XXXQH-ARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKF 1668
H A +G V +EE+D +GKF+RL+N S +DQ MG W++ R+ GD ++Y++ ++
Sbjct: 430 VSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTS-VSYKYTSRY 488
Query: 1669 TLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
LKAGQ VTIWAA AG T SPP DL+WK+QN+WG G ++ L NS G
Sbjct: 489 VLKAGQTVTIWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQG 536
>ref|XP_002688997.1| PREDICTED: lamin B2 [Bos taurus].
Length = 628
Score = 464 bits (1193), Expect = e-130
Identities = 255/574 (44%), Positives = 354/574 (61%), Gaps = 22/574 (3%)
Frame = +1
Query: 157 RPSRDLCPAGSLATLPAMETPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLA 336
R S P + A AM TP RA STPLSPTR++RLQEKE+L+ELNDRLA
Sbjct: 8 RRSEQRGPRTTAAAAAAMATPQPGRAG-----GPSTPLSPTRLSRLQEKEELRELNDRLA 62
Query: 337 VYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQ 516
YIDRVR+LE EN L+L+I+ GIK+ YEAEL DAR+ LD A++RA LQ
Sbjct: 63 HYIDRVRALELENDRLQLKISEREEVTTREVSGIKTLYEAELADARRVLDETARDRACLQ 122
Query: 517 LELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELH 696
+E+ K+R E +E K+EG+L AQ R++DLE++ + EA L+ ALS+KRTLE ++
Sbjct: 123 IEMGKLRAELEEATKSAKKREGELTVAQGRVRDLESVFHRSEAELAAALSDKRTLENDVA 182
Query: 697 DLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHE 876
+LR Q+ QL+ E L RVD ENR Q+L+EEL F+K+++ EE+RET+RRHE
Sbjct: 183 ELRAQLAKAEDGHAVAKKQLEKETLMRVDLENRCQSLQEELAFRKDVFEEEVRETRRRHE 242
Query: 877 TRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSN 1056
RLVE+D+ +Q+E++ ++A AL++LRAQH++QV Y+ ELE+TY AKLDNA+ S+++N
Sbjct: 243 RRLVEVDSSRQQEYDFKMAQALEELRAQHDEQVRLYRLELEQTYQAKLDNAKLSSDQNDK 302
Query: 1057 LVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKER 1236
AA EEL+++R+R++ R+LE+++A ERD R++L KER
Sbjct: 303 AASAAREELKEARMRVESLSYQLSSLQKQASAAEDRIRELEETVAGERDKFRKMLDAKER 362
Query: 1237 EMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRA- 1413
EM E+R M +KLALDMEI AYRK SPSP+S+ + RA
Sbjct: 363 EMMEVRDMMQQQLAEYQELLDVKLALDMEISAYRKLLEGEEERLKLSPSPSSRITISRAT 422
Query: 1414 ---XXXXXXXXXXXXVTKKRKL------------------XXXXXXXXXXQHARTSGRVA 1530
+K+++L Q A SG V+
Sbjct: 423 TSSSGSSVSTAGRPGRSKRKRLEVQEPPGTGSSGLGSSSSTSSGGSFHLAQQASASGSVS 482
Query: 1531 VEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIWAAG 1710
+EE+D EG+FV+L+N S++DQS+GNW+IKRQ + ++Y+F PK+ L+AGQ VT+WAAG
Sbjct: 483 IEEIDLEGRFVQLKNSSDKDQSLGNWRIKRQVLEGEEISYKFTPKYVLRAGQTVTVWAAG 542
Query: 1711 AGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
AG HSPP+ LVWKSQN+WG G S RT L+N+ G
Sbjct: 543 AGVAHSPPSTLVWKSQNSWGTGESFRTTLVNADG 576
>ref|XP_594479.4| PREDICTED: lamin B2 [Bos taurus].
Length = 628
Score = 464 bits (1193), Expect = e-130
Identities = 255/574 (44%), Positives = 354/574 (61%), Gaps = 22/574 (3%)
Frame = +1
Query: 157 RPSRDLCPAGSLATLPAMETPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLA 336
R S P + A AM TP RA STPLSPTR++RLQEKE+L+ELNDRLA
Sbjct: 8 RRSEQRGPRTTAAAAAAMATPQPGRAG-----GPSTPLSPTRLSRLQEKEELRELNDRLA 62
Query: 337 VYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQ 516
YIDRVR+LE EN L+L+I+ GIK+ YEAEL DAR+ LD A++RA LQ
Sbjct: 63 HYIDRVRALELENDRLQLKISEREEVTTREVSGIKTLYEAELADARRVLDETARDRACLQ 122
Query: 517 LELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELH 696
+E+ K+R E +E K+EG+L AQ R++DLE++ + EA L+ ALS+KRTLE ++
Sbjct: 123 IEMGKLRAELEEATKSAKKREGELTVAQGRVRDLESVFHRSEAELAAALSDKRTLENDVA 182
Query: 697 DLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHE 876
+LR Q+ QL+ E L RVD ENR Q+L+EEL F+K+++ EE+RET+RRHE
Sbjct: 183 ELRAQLAKAEDGHAVAKKQLEKETLMRVDLENRCQSLQEELAFRKDVFEEEVRETRRRHE 242
Query: 877 TRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSN 1056
RLVE+D+ +Q+E++ ++A AL++LRAQH++QV Y+ ELE+TY AKLDNA+ S+++N
Sbjct: 243 RRLVEVDSSRQQEYDFKMAQALEELRAQHDEQVRLYRLELEQTYQAKLDNAKLSSDQNDK 302
Query: 1057 LVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKER 1236
AA EEL+++R+R++ R+LE+++A ERD R++L KER
Sbjct: 303 AASAAREELKEARMRVESLSYQLSSLQKQASAAEDRIRELEETVAGERDKFRKMLDAKER 362
Query: 1237 EMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRA- 1413
EM E+R M +KLALDMEI AYRK SPSP+S+ + RA
Sbjct: 363 EMMEVRDMMQQQLAEYQELLDVKLALDMEISAYRKLLEGEEERLKLSPSPSSRITISRAT 422
Query: 1414 ---XXXXXXXXXXXXVTKKRKL------------------XXXXXXXXXXQHARTSGRVA 1530
+K+++L Q A SG V+
Sbjct: 423 TSSSGSSVSTAGRPGRSKRKRLEVQEPPGTGSSGLGSSSSTSSGGSFHLAQQASASGSVS 482
Query: 1531 VEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIWAAG 1710
+EE+D EG+FV+L+N S++DQS+GNW+IKRQ + ++Y+F PK+ L+AGQ VT+WAAG
Sbjct: 483 IEEIDLEGRFVQLKNSSDKDQSLGNWRIKRQVLEGEEISYKFTPKYVLRAGQTVTVWAAG 542
Query: 1711 AGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
AG HSPP+ LVWKSQN+WG G S RT L+N+ G
Sbjct: 543 AGVAHSPPSTLVWKSQNSWGTGESFRTTLVNADG 576
>ref|NP_001075044.1| desmin [Bos taurus].
Length = 470
Score = 124 bits (312), Expect = 2e-28
Identities = 103/399 (25%), Positives = 167/399 (41%), Gaps = 6/399 (1%)
Frame = +1
Query: 163 SRDLCPAGSLATLPAMETPSQRRATRSGA------QASSTPLSPTRITRLQEKEDLQELN 324
SR AG L L A S R + GA + TR EK +LQELN
Sbjct: 57 SRTSGGAGGLGALRASRLGSTRVPSSYGAGELLDFSLADAVNQEFLTTRTNEKVELQELN 116
Query: 325 DRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKER 504
DR A YI++VR LE +NA L + + YE EL + R+ ++ + +R
Sbjct: 117 DRFANYIEKVRFLEQQNAALAAEVNRLKGREPTR---VAEIYEEELRELRRQVEVLTNQR 173
Query: 505 ARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLE 684
AR+ +E + ++ + LKA+ L + K E
Sbjct: 174 ARVDVERDNLLDDLQRLKAK----------------------------LQEEIQLKEEAE 205
Query: 685 GELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETK 864
L R V L R+D E R+++L EE+ F K ++ EE+RE +
Sbjct: 206 NNLAAFRADVDAAT--------------LARIDLERRIESLNEEIAFLKKVHEEEIRELQ 251
Query: 865 RRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAE 1044
+ + + V+++ + L AL+D+RAQ+E + E E+ Y +K+ + Q+A
Sbjct: 252 AQLQEQQVQVEMDMSKP---DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 308
Query: 1045 RNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLA 1224
+N++ + A +E+ + R +I R+LED A E + +A
Sbjct: 309 KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 368
Query: 1225 DKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
E E+ ++ M +K+ALD+EI YRK
Sbjct: 369 RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRK 407
>ref|NP_001095848.1| peripherin [Bos taurus].
Length = 469
Score = 114 bits (286), Expect = 2e-25
Identities = 93/352 (26%), Positives = 157/352 (44%)
Frame = +1
Query: 286 TRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELG 465
TR EK++LQELNDR A +I++VR LE +NA LR + + + EL
Sbjct: 92 TRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELNQARGQEPARADQL---CQQELR 148
Query: 466 DARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEA 645
+ R+ L+ + +ER R+Q+E + E DL A + RL++
Sbjct: 149 ELRRELELLGRERDRVQVERDGLAE--------------DLAALKQRLEE---------- 184
Query: 646 ALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDF 825
E R E H+L + D L R++ E ++++L +E++F
Sbjct: 185 -------ETRKREDAEHNL-----------VLFRKDVDDATLSRLELERKIESLMDEIEF 226
Query: 826 QKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKT 1005
K ++ EELR+ + E++ V+ + + L AL+D+RAQ+E + +E E+
Sbjct: 227 LKKLHEEELRDLQLSVESQQVQHVE-VEATVKPELTAALRDIRAQYESIAAKNLQEAEEW 285
Query: 1006 YSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDS 1185
Y +K + +A RN + A +E+ +SR +I R+LE+
Sbjct: 286 YKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQ 345
Query: 1186 LARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
A E + A E E+ +++ M +K+ALD+EI YRK
Sbjct: 346 FALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRK 397
>ref|NP_776394.2| vimentin [Bos taurus].
Length = 466
Score = 112 bits (279), Expect = 1e-24
Identities = 87/352 (24%), Positives = 159/352 (45%)
Frame = +1
Query: 286 TRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELG 465
TR EK +LQELNDR A YID+VR LE +N ++ + + YE E+
Sbjct: 99 TRTNEKVELQELNDRFANYIDKVRFLEQQN---KILLAELEQLKGQGKSRLGDLYEEEMR 155
Query: 466 DARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEA 645
+ R+ +D + ++AR+++E + E D+M + +L+ E +L +EA
Sbjct: 156 ELRRQVDQLTNDKARVEVERDNLAE--------------DIMRLREKLQ--EEMLQREEA 199
Query: 646 ALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDF 825
E L R V + L R+D E ++++L+EE+ F
Sbjct: 200 ------------ESTLQSFRQDV--------------DNASLARLDLERKVESLQEEIAF 233
Query: 826 QKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKT 1005
K ++ EE++E + + + + V+ID + L AL+D+R Q+E + +E E+
Sbjct: 234 LKKLHDEEIQELQAQIQEQHVQIDMDVSKP---DLTAALRDVRQQYESVAAKNLQEAEEW 290
Query: 1006 YSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDS 1185
Y +K + ++A RN++ + A +E + R ++ R++E++
Sbjct: 291 YKSKFADLSEAANRNNDALRQAKQESNEYRRQVQTLTCEVDALKGTNESLERQMREMEEN 350
Query: 1186 LARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
+ E + + + E+ M+ M +K+ALD+EI YRK
Sbjct: 351 FSVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 402
>ref|NP_776546.1| neurofilament light polypeptide [Bos taurus].
Length = 555
Score = 101 bits (251), Expect = 3e-21
Identities = 84/351 (23%), Positives = 148/351 (42%)
Frame = +1
Query: 289 RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGD 468
R QEK LQ+LNDR A +I+RV LE +N L + ++ YE E+ D
Sbjct: 87 RTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSR-FRALYEQEIRD 145
Query: 469 ARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAA 648
R + E+ LQ E + E + L+AR ++ A+ RL +EA + EAA
Sbjct: 146 LRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRL--MEARKGADEAA 203
Query: 649 LSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQ 828
L+ R + E R+ +L +E+ F
Sbjct: 204 LA----------------------------------------RAELEKRIDSLMDEIAFL 223
Query: 829 KNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKTY 1008
K ++ EE+ E + + + + ++ + + L+ AL+D+RAQ+E + + E+ +
Sbjct: 224 KKVHEEEIAELQAQIQYAQISVEMDVSSKPD--LSAALKDIRAQYEKLAAKNMQNAEEWF 281
Query: 1009 SAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSL 1188
++ +SA +N++ V AA +E+ +SR + ++LED
Sbjct: 282 KSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQ 341
Query: 1189 ARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
+ + + E E+ ++ M +K+ALD+EI AYRK
Sbjct: 342 NADISAMQDTINKLENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRK 392
>ref|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
Length = 931
Score = 100 bits (250), Expect = 3e-21
Identities = 84/385 (21%), Positives = 166/385 (43%)
Frame = +1
Query: 187 SLATLPAMETPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLE 366
S A L + E+ + S S P +++R EKE LQ LNDR A YI++V LE
Sbjct: 64 SSAMLSSAESSLDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLE 123
Query: 367 TENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEF 546
+N + I + AY+ E+ + R TL+ V E+A++QL+ + E+
Sbjct: 124 QQNKEIEAEIQALRQKQASHAQ-LGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDI 182
Query: 547 KELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXX 726
LK R +ARL+D EAA+ +
Sbjct: 183 HRLKER--------FEEEARLRD------DTEAAIRALRKD------------------- 209
Query: 727 XXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGK 906
+++ L +V+ + ++Q+L++E+ F ++ + EE+ + + + + ++ +
Sbjct: 210 ---------IEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHITVE--R 258
Query: 907 QREFESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQ 1086
+ ++ ++ AL+++R+Q E +Q + E+ + + ++AE+N + +A EE+
Sbjct: 259 KDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIA 318
Query: 1087 QSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMX 1266
+ R ++ D+E+ + + + + E E+ + M
Sbjct: 319 EYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMA 378
Query: 1267 XXXXXXXXXXXIKLALDMEIHAYRK 1341
+K+ALD+EI AYRK
Sbjct: 379 RHLREYQDLLNVKMALDIEIAAYRK 403
>ref|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
Length = 931
Score = 100 bits (250), Expect = 3e-21
Identities = 84/385 (21%), Positives = 166/385 (43%)
Frame = +1
Query: 187 SLATLPAMETPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLE 366
S A L + E+ + S S P +++R EKE LQ LNDR A YI++V LE
Sbjct: 64 SSAMLSSAESSLDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLE 123
Query: 367 TENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEF 546
+N + I + AY+ E+ + R TL+ V E+A++QL+ + E+
Sbjct: 124 QQNKEIEAEIQALRQKQASHAQ-LGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDI 182
Query: 547 KELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXX 726
LK R +ARL+D EAA+ +
Sbjct: 183 HRLKER--------FEEEARLRD------DTEAAIRALRKD------------------- 209
Query: 727 XXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGK 906
+++ L +V+ + ++Q+L++E+ F ++ + EE+ + + + + ++ +
Sbjct: 210 ---------IEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHITVE--R 258
Query: 907 QREFESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQ 1086
+ ++ ++ AL+++R+Q E +Q + E+ + + ++AE+N + +A EE+
Sbjct: 259 KDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIA 318
Query: 1087 QSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMX 1266
+ R ++ D+E+ + + + + E E+ + M
Sbjct: 319 EYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMA 378
Query: 1267 XXXXXXXXXXXIKLALDMEIHAYRK 1341
+K+ALD+EI AYRK
Sbjct: 379 RHLREYQDLLNVKMALDIEIAAYRK 403
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.129 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,481,641
Number of extensions: 1597227
Number of successful extensions: 13418
Number of sequences better than 1.0e-05: 99
Number of HSP's gapped: 12772
Number of HSP's successfully gapped: 134
Length of query: 604
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 496
Effective length of database: 14,107,870
Effective search space: 6997503520
Effective search space used: 6997503520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008891
(1814 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864487.1| PREDICTED: similar to Lamin A/C (70 kDa lamin) ... 818 0.0
Alignment gi|XP_851808.1| PREDICTED: similar to lamin A/C isoform 3 isofo... 818 0.0
Alignment gi|XP_537246.2| PREDICTED: similar to Lamin A/C (70 kDa lamin) ... 818 0.0
Alignment gi|XP_864434.1| PREDICTED: similar to Lamin A/C (70 kDa lamin) ... 818 0.0
Alignment gi|XP_542188.2| PREDICTED: similar to Lamin B2 [Canis familiari... 403 e-112
Alignment gi|XP_531892.2| PREDICTED: similar to Lamin B1 [Canis familiari... 360 3e-99
Alignment gi|NP_001012394.1| desmin [Canis lupus familiaris]. 124 4e-28
Alignment gi|XP_534812.2| PREDICTED: similar to peripherin isoform 1 [Can... 115 1e-25
Alignment gi|XP_861904.1| PREDICTED: similar to peripherin isoform 3 [Can... 115 1e-25
Alignment gi|XP_856098.1| PREDICTED: similar to Vimentin isoform 3 [Canis... 115 2e-25
>ref|XP_864487.1| PREDICTED: similar to Lamin A/C (70 kDa lamin) isoform 5 [Canis
familiaris].
Length = 615
Score = 818 bits (2112), Expect = 0.0
Identities = 441/536 (82%), Positives = 446/536 (83%), Gaps = 1/536 (0%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
Sbjct: 1 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 60
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
LRIT GIK+AYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN
Sbjct: 61 LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 120
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 121 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVTKLEAALGEAK 180
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR
Sbjct: 181 KQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 240
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
LADALQ+LRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID
Sbjct: 241 LADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 300
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
RDLEDSLARERDTSRRLLADKEREMAEMRARM
Sbjct: 301 SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLADKEREMAEMRARMQQQLDEYQ 360
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRK 1467
IKLALDMEIHAYRK SPSPTSQRSRGRA +TKKRK
Sbjct: 361 ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGTGSITKKRK 420
Query: 1468 L-XXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLL 1644
L QHARTSGRVAVEEVDEEGKFVRLRNKS+EDQSMGNWQIKRQNGDDPLL
Sbjct: 421 LESSESRSSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSSEDQSMGNWQIKRQNGDDPLL 480
Query: 1645 TYRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
TYRFPPKFTLKAGQVVTIWAAGAGATHSPP DLVWK+QNTWGCGNSLRTALINSTG
Sbjct: 481 TYRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTG 536
>ref|XP_851808.1| PREDICTED: similar to lamin A/C isoform 3 isoform 3 [Canis
familiaris].
Length = 635
Score = 818 bits (2112), Expect = 0.0
Identities = 441/536 (82%), Positives = 446/536 (83%), Gaps = 1/536 (0%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
Sbjct: 1 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 60
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
LRIT GIK+AYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN
Sbjct: 61 LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 120
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 121 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVTKLEAALGEAK 180
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR
Sbjct: 181 KQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 240
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
LADALQ+LRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID
Sbjct: 241 LADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 300
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
RDLEDSLARERDTSRRLLADKEREMAEMRARM
Sbjct: 301 SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLADKEREMAEMRARMQQQLDEYQ 360
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRK 1467
IKLALDMEIHAYRK SPSPTSQRSRGRA +TKKRK
Sbjct: 361 ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGTGSITKKRK 420
Query: 1468 L-XXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLL 1644
L QHARTSGRVAVEEVDEEGKFVRLRNKS+EDQSMGNWQIKRQNGDDPLL
Sbjct: 421 LESSESRSSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSSEDQSMGNWQIKRQNGDDPLL 480
Query: 1645 TYRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
TYRFPPKFTLKAGQVVTIWAAGAGATHSPP DLVWK+QNTWGCGNSLRTALINSTG
Sbjct: 481 TYRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTG 536
>ref|XP_537246.2| PREDICTED: similar to Lamin A/C (70 kDa lamin) isoform 1 [Canis
familiaris].
Length = 573
Score = 818 bits (2112), Expect = 0.0
Identities = 441/536 (82%), Positives = 446/536 (83%), Gaps = 1/536 (0%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
Sbjct: 1 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 60
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
LRIT GIK+AYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN
Sbjct: 61 LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 120
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 121 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVTKLEAALGEAK 180
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR
Sbjct: 181 KQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 240
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
LADALQ+LRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID
Sbjct: 241 LADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 300
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
RDLEDSLARERDTSRRLLADKEREMAEMRARM
Sbjct: 301 SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLADKEREMAEMRARMQQQLDEYQ 360
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRK 1467
IKLALDMEIHAYRK SPSPTSQRSRGRA +TKKRK
Sbjct: 361 ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGTGSITKKRK 420
Query: 1468 L-XXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLL 1644
L QHARTSGRVAVEEVDEEGKFVRLRNKS+EDQSMGNWQIKRQNGDDPLL
Sbjct: 421 LESSESRSSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSSEDQSMGNWQIKRQNGDDPLL 480
Query: 1645 TYRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
TYRFPPKFTLKAGQVVTIWAAGAGATHSPP DLVWK+QNTWGCGNSLRTALINSTG
Sbjct: 481 TYRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTG 536
>ref|XP_864434.1| PREDICTED: similar to Lamin A/C (70 kDa lamin) isoform 4 [Canis
familiaris].
Length = 665
Score = 818 bits (2112), Expect = 0.0
Identities = 441/536 (82%), Positives = 446/536 (83%), Gaps = 1/536 (0%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
Sbjct: 1 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 60
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
LRIT GIK+AYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN
Sbjct: 61 LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 120
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 121 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVTKLEAALGEAK 180
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR
Sbjct: 181 KQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 240
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
LADALQ+LRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID
Sbjct: 241 LADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 300
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
RDLEDSLARERDTSRRLLADKEREMAEMRARM
Sbjct: 301 SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLADKEREMAEMRARMQQQLDEYQ 360
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRK 1467
IKLALDMEIHAYRK SPSPTSQRSRGRA +TKKRK
Sbjct: 361 ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGTGSITKKRK 420
Query: 1468 L-XXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLL 1644
L QHARTSGRVAVEEVDEEGKFVRLRNKS+EDQSMGNWQIKRQNGDDPLL
Sbjct: 421 LESSESRSSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSSEDQSMGNWQIKRQNGDDPLL 480
Query: 1645 TYRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
TYRFPPKFTLKAGQVVTIWAAGAGATHSPP DLVWK+QNTWGCGNSLRTALINSTG
Sbjct: 481 TYRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTG 536
>ref|XP_542188.2| PREDICTED: similar to Lamin B2 [Canis familiaris].
Length = 593
Score = 403 bits (1036), Expect = e-112
Identities = 213/482 (44%), Positives = 301/482 (62%), Gaps = 22/482 (4%)
Frame = +1
Query: 433 GIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLK 612
GIK+ YE+EL DAR+ LD A+ERARLQ+EL K+R E +E + K+EG+L AQ R+K
Sbjct: 21 GIKTLYESELADARRVLDETARERARLQIELGKLRAELEEANKSSKKREGELTVAQGRVK 80
Query: 613 DLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAEN 792
DLE+L + EA L+ ALS+KR LE +L +LR Q+ QL+ E L RVD EN
Sbjct: 81 DLESLFHRSEAELAAALSDKRVLESDLAELRAQLAKAEDGHAVAKKQLEKETLMRVDLEN 140
Query: 793 RLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQ 972
R Q+L+EELDF+KN++ EE+RET+RRHE RLVE+D+ +Q+E++ R+A AL++LR+QH++Q
Sbjct: 141 RCQSLQEELDFRKNVFEEEVRETRRRHERRLVEVDSSRQQEYDFRMAQALEELRSQHDEQ 200
Query: 973 VEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXX 1152
V YK ELE+TY AKLD+A+ S+++N AA EEL+++R+R++
Sbjct: 201 VRLYKLELEQTYQAKLDSAKLSSDQNDKAASAAREELKEARMRLESLSYQLSGLQKQASA 260
Query: 1153 XXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHA 1332
R+LE+++A ERD R++L KE+EM EMR M +KLALDMEI A
Sbjct: 261 AEDRIRELEETMAGERDKFRKMLDAKEQEMTEMRDVMQQQLAEYQELLDVKLALDMEISA 320
Query: 1333 YRKXXXXXXXXXXXSPSPTSQ----RSRGRAXXXXXXXXXXXXVTKKRKL---------- 1470
YRK +PSP+S+ R+ + +K+++L
Sbjct: 321 YRKLLEGEEERLKLTPSPSSRITVSRATSSSSSSSVSTAGRSGRSKRKRLEAEESPGPGS 380
Query: 1471 --------XXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQN 1626
Q A SG V++EE+D EG+FV+L+N S++DQS+GNW+IKRQ
Sbjct: 381 SGIGSGSSSSSTTSFHLAQQASASGGVSIEEIDLEGRFVQLKNSSDKDQSLGNWRIKRQV 440
Query: 1627 GDDPLLTYRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINS 1806
+ + Y+F PK+ L+AGQ VT+WAAGAG HSPP+ LVWK+QN+WG G S RT L+N+
Sbjct: 441 LEGEEIAYKFTPKYVLRAGQTVTVWAAGAGVAHSPPSTLVWKTQNSWGTGESFRTVLVNA 500
Query: 1807 TG 1812
G
Sbjct: 501 DG 502
>ref|XP_531892.2| PREDICTED: similar to Lamin B1 [Canis familiaris].
Length = 519
Score = 360 bits (923), Expect = 3e-99
Identities = 191/415 (46%), Positives = 263/415 (63%), Gaps = 1/415 (0%)
Frame = +1
Query: 571 KKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXX 750
KKE DL AQ +L++ EA LNSK+AAL+TAL +K++LEG+L DL+ Q+
Sbjct: 56 KKESDLNGAQMKLREYEAALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLAAAKK 115
Query: 751 QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRL 930
QL DE L +VD ENR Q+L E+L+F+KN+Y EE+ ET+R+HETRLVE+D+G+Q E+E +L
Sbjct: 116 QLADETLLKVDLENRCQSLTEDLEFRKNMYEEEINETRRKHETRLVEVDSGRQIEYEYKL 175
Query: 931 ADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDX 1110
A AL ++R QH+ QV+ YK+ELE+TY AKL+NAR S+E N++ V +A EEL +SR+RI+
Sbjct: 176 AQALHEMREQHDAQVKLYKEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIES 235
Query: 1111 XXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXX 1290
++LED LA+ERD SRR+L+DKEREMAE+R +M
Sbjct: 236 LSSQLSNLQKESRACLERIQELEDLLAKERDNSRRMLSDKEREMAEIRDQMQQQLNDYEQ 295
Query: 1291 XXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRKL 1470
+KLALDMEI AYRK SPSP+S+ + RA +
Sbjct: 296 LLDVKLALDMEISAYRKLLEGEEERLKLSPSPSSRVTVSRASSSRSVRTTRGKRKRVDVE 355
Query: 1471 XXXXXXXXXXQH-ARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 1647
H A +G V +EE+D +GKF+RL+N S +DQ MG W++ R+ GD ++
Sbjct: 356 ESEASSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTS-VS 414
Query: 1648 YRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
Y++ ++ LKAGQ VTIWAA AG T SPP DL+WK+QN+WG G ++ L NS G
Sbjct: 415 YKYTSRYVLKAGQTVTIWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQG 469
>ref|NP_001012394.1| desmin [Canis lupus familiaris].
Length = 469
Score = 124 bits (310), Expect = 4e-28
Identities = 101/398 (25%), Positives = 168/398 (42%), Gaps = 5/398 (1%)
Frame = +1
Query: 163 SRDLCPAGSLATLPAMETPSQRRATRSGAQASSTPLSPT-----RITRLQEKEDLQELND 327
SR AG L L A + R + S + L+ TR EK +LQELND
Sbjct: 57 SRTSGGAGGLGALRAGRLGTGRAPSYSAGELLDFSLADAVNQEFLTTRTNEKVELQELND 116
Query: 328 RLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERA 507
R A YI++VR LE +NA L + + YE EL + R+ ++ + +RA
Sbjct: 117 RFANYIEKVRFLEQQNAALAAEVNRLKGREPTR---VAEIYEEELRELRRQVEVLTNQRA 173
Query: 508 RLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEG 687
R+ +E + ++ + LKA+ L + K E
Sbjct: 174 RVDVERDNLLDDLQRLKAK----------------------------LQEEIQLKEEAEN 205
Query: 688 ELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKR 867
L R V L R+D E R+++L EE+ F K ++ EE+RE +
Sbjct: 206 NLAAFRADVDAAT--------------LARIDLERRIESLNEEIAFLKKVHEEEIRELQA 251
Query: 868 RHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAER 1047
+ + + V+++ + L AL+D+RAQ+E + E E+ Y +K+ + Q+A +
Sbjct: 252 QLQEQQVQVEMDMSKP---DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANK 308
Query: 1048 NSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLAD 1227
N++ + A +E+ + R +I R++ED A E + +A
Sbjct: 309 NNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMREMEDRFASEASGYQDNIAR 368
Query: 1228 KEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
E E+ ++ M +K+ALD+EI YRK
Sbjct: 369 LEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRK 406
>ref|XP_534812.2| PREDICTED: similar to peripherin isoform 1 [Canis familiaris].
Length = 469
Score = 115 bits (289), Expect = 1e-25
Identities = 96/356 (26%), Positives = 160/356 (44%), Gaps = 4/356 (1%)
Frame = +1
Query: 286 TRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELG 465
TR EK++LQELNDR A +I++VR LE +NA LR ++ + + EL
Sbjct: 92 TRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQL---CQQELR 148
Query: 466 DARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEA 645
+ R+ L+ + +ER R+Q+E + E DL A + RL++
Sbjct: 149 ELRRELELLGRERDRVQVERDGLAE--------------DLAALKQRLEE---------- 184
Query: 646 ALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDF 825
E R E H+L + D L R++ E ++++L +E++F
Sbjct: 185 -------ETRKREDAEHNL-----------VLFRKDVDDATLSRLELERKIESLMDEIEF 226
Query: 826 QKNIYSEELRETKRRHETRLVEIDNGKQREFES----RLADALQDLRAQHEDQVEQYKKE 993
K ++ EELR+ + E++ V+ Q E E+ L AL+D+RAQ+E + +E
Sbjct: 227 LKKLHEEELRDLQVSVESQQVQ-----QVEVEATVKPELTAALRDIRAQYESIAAKNLQE 281
Query: 994 LEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRD 1173
E+ Y +K + +A RN + A +E+ +SR +I R+
Sbjct: 282 AEEWYKSKYGDLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRE 341
Query: 1174 LEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
LE+ A E + A E E+ +++ M +K+ALD+EI YRK
Sbjct: 342 LEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRK 397
>ref|XP_861904.1| PREDICTED: similar to peripherin isoform 3 [Canis familiaris].
Length = 453
Score = 115 bits (289), Expect = 1e-25
Identities = 96/356 (26%), Positives = 160/356 (44%), Gaps = 4/356 (1%)
Frame = +1
Query: 286 TRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELG 465
TR EK++LQELNDR A +I++VR LE +NA LR ++ + + EL
Sbjct: 92 TRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQL---CQQELR 148
Query: 466 DARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEA 645
+ R+ L+ + +ER R+Q+E + E DL A + RL++
Sbjct: 149 ELRRELELLGRERDRVQVERDGLAE--------------DLAALKQRLEE---------- 184
Query: 646 ALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDF 825
E R E H+L + D L R++ E ++++L +E++F
Sbjct: 185 -------ETRKREDAEHNL-----------VLFRKDVDDATLSRLELERKIESLMDEIEF 226
Query: 826 QKNIYSEELRETKRRHETRLVEIDNGKQREFES----RLADALQDLRAQHEDQVEQYKKE 993
K ++ EELR+ + E++ V+ Q E E+ L AL+D+RAQ+E + +E
Sbjct: 227 LKKLHEEELRDLQVSVESQQVQ-----QVEVEATVKPELTAALRDIRAQYESIAAKNLQE 281
Query: 994 LEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRD 1173
E+ Y +K + +A RN + A +E+ +SR +I R+
Sbjct: 282 AEEWYKSKYGDLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRE 341
Query: 1174 LEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
LE+ A E + A E E+ +++ M +K+ALD+EI YRK
Sbjct: 342 LEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRK 397
>ref|XP_856098.1| PREDICTED: similar to Vimentin isoform 3 [Canis familiaris].
Length = 411
Score = 115 bits (287), Expect = 2e-25
Identities = 110/432 (25%), Positives = 191/432 (44%), Gaps = 14/432 (3%)
Frame = +1
Query: 88 SEPRASRPACSHLDQSLSLA*APRPS--RDL---CPAGSLATLP-AMETPSQRRATR--- 240
S P ++R + ++ SL A RPS R L P G+ AT A+ S R
Sbjct: 22 SRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSSVPGVRLLQ 81
Query: 241 -----SGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXX 405
S A A +T + TR EK +LQELNDR A YID+VR LE +N ++ +
Sbjct: 82 DSVDFSLADAINTEF---KNTRTNEKVELQELNDRFANYIDKVRFLEQQN---KILLAEL 135
Query: 406 XXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGD 585
+ YE E+ + R+ +D + ++AR+++E + E D
Sbjct: 136 EQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE--------------D 181
Query: 586 LMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDE 765
+M + +L+ E +L +EA E L R Q + +
Sbjct: 182 IMRLREKLQ--EEMLQREEA------------ESTLQSFRQQ-------------DVDNA 214
Query: 766 MLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ 945
L R+D E ++++L+EE+ F K ++ EE++E + + + + V+ID + L AL+
Sbjct: 215 SLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKP---DLTAALR 271
Query: 946 DLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXX 1125
D+R Q+E + +E E+ Y +K + ++A RN++ + A +E + R ++
Sbjct: 272 DVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEV 331
Query: 1126 XXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIK 1305
R++E++ A E + + + E+ M+ M +K
Sbjct: 332 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVK 391
Query: 1306 LALDMEIHAYRK 1341
+ALD+EI YRK
Sbjct: 392 MALDIEIATYRK 403
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.129 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,990,118
Number of extensions: 1650249
Number of successful extensions: 14193
Number of sequences better than 1.0e-05: 145
Number of HSP's gapped: 13584
Number of HSP's successfully gapped: 226
Length of query: 604
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 495
Effective length of database: 15,240,880
Effective search space: 7544235600
Effective search space used: 7544235600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008891
(1814 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001104727.1| prelamin-A/C [Sus scrofa]. 830 0.0
Alignment gi|XP_003123930.2| PREDICTED: lamin-B1 [Sus scrofa]. 476 e-134
Alignment gi|XP_003354039.1| PREDICTED: lamin-B2 [Sus scrofa]. 457 e-128
Alignment gi|NP_001001535.1| desmin [Sus scrofa]. 124 2e-28
Alignment gi|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa]. 117 2e-26
Alignment gi|XP_003126153.1| PREDICTED: peripherin [Sus scrofa]. 117 2e-26
Alignment gi|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa]. 114 2e-25
Alignment gi|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [... 104 2e-22
Alignment gi|XP_003132861.1| PREDICTED: neurofilament light polypeptide-l... 101 2e-21
Alignment gi|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus sc... 98 2e-20
>ref|NP_001104727.1| prelamin-A/C [Sus scrofa].
Length = 664
Score = 830 bits (2144), Expect = 0.0
Identities = 447/535 (83%), Positives = 447/535 (83%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
Sbjct: 1 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 60
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
LRIT GIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN
Sbjct: 61 LRITESEEVVSREVSGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 120
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 121 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAK 180
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR
Sbjct: 181 KQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 240
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID
Sbjct: 241 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 300
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
RDLEDSLARERDTSRRLLADKEREMAEMRARM
Sbjct: 301 SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLADKEREMAEMRARMQQQLDEYQ 360
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRK 1467
IKLALDMEIHAYRK SPSPTSQRSRGRA VTKKRK
Sbjct: 361 ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQSGGSVTKKRK 420
Query: 1468 LXXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 1647
L QHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT
Sbjct: 421 LESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 480
Query: 1648 YRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
YRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG
Sbjct: 481 YRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 535
>ref|XP_003123930.2| PREDICTED: lamin-B1 [Sus scrofa].
Length = 586
Score = 476 bits (1224), Expect = e-134
Identities = 256/537 (47%), Positives = 346/537 (64%), Gaps = 1/537 (0%)
Frame = +1
Query: 205 AMETPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGL 384
A TP Q R T S A +TPLSPTR++RLQEKE+L+ELNDRLAVYID+VRSLETEN+ L
Sbjct: 2 ATATPVQSR-TGSRAGGPTTPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSAL 60
Query: 385 RLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKAR 564
+L++T G+K+ YE EL DAR+ LD A+ERA+LQ+EL K + E +L
Sbjct: 61 QLQVTEREEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKFKAEHDQLLLN 120
Query: 565 NTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXX 744
KKE DL AQ +L++ EA LNSK+AAL+TAL +K++LE +L DL+ Q+
Sbjct: 121 YAKKESDLNGAQIKLREYEAALNSKDAALATALGDKKSLESDLEDLKDQIAQLEASLAAA 180
Query: 745 XXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFES 924
QL DE L +VD ENR Q+L E+L+F+KN+Y EE+ ET+R+HETRLVE+D+G+Q E+E
Sbjct: 181 KKQLADETLLKVDLENRCQSLTEDLEFRKNMYEEEINETRRKHETRLVEVDSGRQIEYEY 240
Query: 925 RLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRI 1104
+LA AL ++R QH+ QV+ YK+ELE+TY AKL+NAR S+E N++ V +A EEL +SR+RI
Sbjct: 241 KLAQALHEMREQHDAQVKLYKEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRI 300
Query: 1105 DXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXX 1284
+ ++LED LA+ERD SRR+L+DKEREMAE+R +M
Sbjct: 301 ESLSSQLSNLQKESRACLERIQELEDLLAKERDNSRRMLSDKEREMAEIRDQMQQQLNDY 360
Query: 1285 XXXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKR 1464
+KLALDMEI AYRK SPSP+S+ + RA +
Sbjct: 361 EQLLDVKLALDMEISAYRKLLEGEEERLKLSPSPSSRVTVSRASSSRSVRTTRGKRKRVD 420
Query: 1465 KLXXXXXXXXXXQH-ARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPL 1641
H A +G V +EE+D +GKF+RL+N S +DQ MG W++ R+ GD
Sbjct: 421 VEESEASSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTS- 479
Query: 1642 LTYRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
++Y++ ++ LKAGQ VTIWAA AG T SPP DL+WK+QN+WG G ++ L NS G
Sbjct: 480 VSYKYTSRYVLKAGQTVTIWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQG 536
>ref|XP_003354039.1| PREDICTED: lamin-B2 [Sus scrofa].
Length = 604
Score = 457 bits (1175), Expect = e-128
Identities = 247/557 (44%), Positives = 346/557 (62%), Gaps = 22/557 (3%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
M TP RA +TPLSPTR++RLQEKE+L+ELNDRLA YIDRVR+LE EN L
Sbjct: 1 MATPPPGRAG-----GPATPLSPTRLSRLQEKEELRELNDRLAHYIDRVRALELENDRLL 55
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
L+I+ GIK+ YE+EL DAR+ LD A++RARLQ+E+ K+ + +E
Sbjct: 56 LKISEKEEVTTREVSGIKTLYESELADARRVLDETARDRARLQIEIGKLGADLEEANKSA 115
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
K+EG+LM AQ R++DLE++ + E L+ ALS+KR LE ++ +LR Q+
Sbjct: 116 KKREGELMGAQDRIRDLESVFHRSEMELAAALSDKRALENDVAELRAQLAKAEDGHAVAK 175
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QL+ E L RVD ENR Q+L+EEL F+K+++ EE+RET+RRHE RLVE+D+ +Q+E++ +
Sbjct: 176 KQLEKETLMRVDLENRCQSLQEELAFRKDVFEEEVRETRRRHERRLVEVDSSRQQEYDFK 235
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
+A AL++LRAQH++QV YK ELE+TY AKLDNA+ S+++N AA EEL+++R+R++
Sbjct: 236 MAQALEELRAQHDEQVRLYKLELEQTYQAKLDNAKLSSDQNDKAASAAREELKEARMRLE 295
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
R+LE+++A ERD R++L KEREM EMR M
Sbjct: 296 SLSYQLSSLQKQASAAEDRIRELEETMAGERDKFRKMLDAKEREMTEMRDVMQQQLAEYQ 355
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQ----RSRGRAXXXXXXXXXXXXVT 1455
+KLALDMEI+AYRK SPSP+S+ R+ + +
Sbjct: 356 ELLDVKLALDMEINAYRKLLEGEEERLKLSPSPSSRITISRATSSSSGSSVSMAGRSGRS 415
Query: 1456 KKRKL------------------XXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKS 1581
K+++L Q A SG +++EE+D EGKFV+L+N S
Sbjct: 416 KRKRLEVEEPLGTGSSGIGSGSSTSSSSSFHMAQQASASGSISIEEIDLEGKFVQLKNSS 475
Query: 1582 NEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQN 1761
++DQS+GNW+IKRQ + + Y+F PK+ L+AGQ VT+WAAGAG HSPP+ LVWKSQN
Sbjct: 476 DKDQSLGNWRIKRQVLEGEEIAYKFTPKYVLRAGQTVTVWAAGAGVAHSPPSTLVWKSQN 535
Query: 1762 TWGCGNSLRTALINSTG 1812
+WG G S RT L+N+ G
Sbjct: 536 SWGTGGSFRTVLVNADG 552
>ref|NP_001001535.1| desmin [Sus scrofa].
Length = 471
Score = 124 bits (311), Expect = 2e-28
Identities = 92/352 (26%), Positives = 154/352 (43%)
Frame = +1
Query: 286 TRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELG 465
TR EK +LQELNDR A YI++VR LE +NA L + + YE EL
Sbjct: 105 TRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTR---VAEIYEEELR 161
Query: 466 DARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEA 645
+ R+ ++ + +RAR+ +E + ++ + LKA+
Sbjct: 162 ELRRQVEVLTNQRARVDVERDNLLDDLQRLKAK--------------------------- 194
Query: 646 ALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDF 825
L + K E L R V L R+D E R+++L EE+ F
Sbjct: 195 -LQEEIQLKEEAENNLAAFRADVDAAT--------------LARIDLERRIESLNEEIAF 239
Query: 826 QKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKT 1005
K ++ EE+RE + + + + V+++ + L AL+D+RAQ+E + E E+
Sbjct: 240 LKKVHEEEIRELQAQLQEQQVQVEMDMSKP---DLTAALRDIRAQYETIAAKNISEAEEW 296
Query: 1006 YSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDS 1185
Y +K+ + Q+A +N++ + A +E+ + R +I R+LED
Sbjct: 297 YKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDR 356
Query: 1186 LARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
A E + +A E E+ ++ M +K+ALD+EI YRK
Sbjct: 357 FASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRK 408
>ref|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa].
Length = 469
Score = 117 bits (293), Expect = 2e-26
Identities = 106/391 (27%), Positives = 173/391 (44%), Gaps = 4/391 (1%)
Frame = +1
Query: 181 AGSLATLPAMETPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRS 360
AGSL LP+ R S A+A + TR EK++LQELNDR A +I++VR
Sbjct: 66 AGSLLRLPS------ERLDFSMAEALNQEFLATRSN---EKQELQELNDRFANFIEKVRF 116
Query: 361 LETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVRE 540
LE +NA LR ++ + + EL + R+ L+ + +ER R+Q+E + E
Sbjct: 117 LEQQNAALRGELSQARGQEPARADQL---CQQELRELRRELELLGRERDRVQVERDGLAE 173
Query: 541 EFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXX 720
DL A + RL++ E R E H+L
Sbjct: 174 --------------DLAALKQRLEE-----------------ETRKREDAEHNL------ 196
Query: 721 XXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDN 900
+ D L R++ E ++++L +E++F K ++ EELR+ + E++ V+
Sbjct: 197 -----VLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQMSVESQQVQ--- 248
Query: 901 GKQREFES----RLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGA 1068
Q E E+ L AL+D+RAQ+E + +E E+ Y +K + +A RN +
Sbjct: 249 --QFEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQ 306
Query: 1069 AHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAE 1248
A +E+ +SR +I R+LE+ A E + A E E+ +
Sbjct: 307 AKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAKLEEELRQ 366
Query: 1249 MRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
++ M +K+ALD+EI YRK
Sbjct: 367 LKEEMARHLREYQELLNVKMALDIEIATYRK 397
>ref|XP_003126153.1| PREDICTED: peripherin [Sus scrofa].
Length = 469
Score = 117 bits (293), Expect = 2e-26
Identities = 106/391 (27%), Positives = 173/391 (44%), Gaps = 4/391 (1%)
Frame = +1
Query: 181 AGSLATLPAMETPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRS 360
AGSL LP+ R S A+A + TR EK++LQELNDR A +I++VR
Sbjct: 66 AGSLLRLPS------ERLDFSMAEALNQEFLATRSN---EKQELQELNDRFANFIEKVRF 116
Query: 361 LETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVRE 540
LE +NA LR ++ + + EL + R+ L+ + +ER R+Q+E + E
Sbjct: 117 LEQQNAALRGELSQARGQEPARADQL---CQQELRELRRELELLGRERDRVQVERDGLAE 173
Query: 541 EFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXX 720
DL A + RL++ E R E H+L
Sbjct: 174 --------------DLAALKQRLEE-----------------ETRKREDAEHNL------ 196
Query: 721 XXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDN 900
+ D L R++ E ++++L +E++F K ++ EELR+ + E++ V+
Sbjct: 197 -----VLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQMSVESQQVQ--- 248
Query: 901 GKQREFES----RLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGA 1068
Q E E+ L AL+D+RAQ+E + +E E+ Y +K + +A RN +
Sbjct: 249 --QFEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQ 306
Query: 1069 AHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAE 1248
A +E+ +SR +I R+LE+ A E + A E E+ +
Sbjct: 307 AKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAKLEEELRQ 366
Query: 1249 MRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
++ M +K+ALD+EI YRK
Sbjct: 367 LKEEMARHLREYQELLNVKMALDIEIATYRK 397
>ref|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa].
Length = 466
Score = 114 bits (284), Expect = 2e-25
Identities = 108/437 (24%), Positives = 187/437 (42%), Gaps = 19/437 (4%)
Frame = +1
Query: 88 SEPRASRPACSHLDQSLSLA*APRPSRDLCPAGSLATLPAMETPSQRRATRSGAQASSTP 267
S P +SR + ++ SL A RPS + SL T +P ATRS A +
Sbjct: 22 SRPSSSRSYVTTSTRTYSLGSALRPST----SRSLYT----SSPGGVYATRSSAVRLRSS 73
Query: 268 LSPTRI-------------------TRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRL 390
+ R+ TR EK +LQELNDR A YID+VR LE +N ++
Sbjct: 74 VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQN---KI 130
Query: 391 RITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNT 570
+ + YE E+ + R+ +D + ++AR+++E + E
Sbjct: 131 LLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE---------- 180
Query: 571 KKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXX 750
D+M + +L+ E L +EA E L R V
Sbjct: 181 ----DIMRLREKLQ--EETLQREEA------------ESTLQSFRQDV------------ 210
Query: 751 QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRL 930
+ L R+D E ++++L+EE+ F K ++ EE++E + + + + V+ID + L
Sbjct: 211 --DNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKP---DL 265
Query: 931 ADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDX 1110
AL+D+R Q+E + +E E+ Y +K + ++A RN++ + A +E + R ++
Sbjct: 266 TAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQS 325
Query: 1111 XXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXX 1290
R++E++ A E + + + E+ M+ M
Sbjct: 326 LTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQD 385
Query: 1291 XXXIKLALDMEIHAYRK 1341
+K+ALD+EI YRK
Sbjct: 386 LLNVKMALDIEIATYRK 402
>ref|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [Sus scrofa].
Length = 428
Score = 104 bits (259), Expect = 2e-22
Identities = 96/386 (24%), Positives = 156/386 (40%)
Frame = +1
Query: 184 GSLATLPAMETPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSL 363
G +L M P R S A A +T TR + E+ ++ ELNDR A YI++VR L
Sbjct: 30 GPRLSLARMPPPLPARVDFSLAGALNTGFKETRAS---ERAEMMELNDRFASYIEKVRFL 86
Query: 364 ETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREE 543
E +N L + + Y+AEL + R LD + ARL++E + +
Sbjct: 87 EQQNKALAAELNQLRAKEPTK---LADVYQAELRELRLRLDQLTANGARLEVERDNLAQ- 142
Query: 544 FKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXX 723
DL + +L+D L E L+T E
Sbjct: 143 -------------DLGTLRQKLQDETNLRLEAENNLATYRQEA----------------- 172
Query: 724 XXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNG 903
+ L R+D E ++++L+EE+ F + I+ EE+RE + + + V ++
Sbjct: 173 -----------DEATLARLDLERKIESLEEEIRFLRKIHDEEVRELQEQLAQQQVHVEMD 221
Query: 904 KQREFESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEEL 1083
+ L AL+++R Q+E +E E+ Y +K + +A RN+ L+ A E
Sbjct: 222 VTKP---DLTAALREIRTQYEAVATSNMQEAEEWYRSKFADLTDAAARNAELLRQAKHEA 278
Query: 1084 QQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARM 1263
R ++ R+ E+ ARE + + L E E ++ M
Sbjct: 279 NDYRRQLQALTCDVESLRGTNESLERQMREQEERHAREAASYQEALTRLEEEGQSLKDEM 338
Query: 1264 XXXXXXXXXXXXIKLALDMEIHAYRK 1341
+KLALD+EI YRK
Sbjct: 339 ARHLQEYQELLNVKLALDIEIATYRK 364
>ref|XP_003132861.1| PREDICTED: neurofilament light polypeptide-like isoform 2 [Sus
scrofa].
Length = 544
Score = 101 bits (251), Expect = 2e-21
Identities = 84/351 (23%), Positives = 148/351 (42%)
Frame = +1
Query: 289 RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGD 468
R QEK LQ+LNDR A +I+RV LE +N L + ++ YE E+ D
Sbjct: 87 RTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSR-FRALYEQEIRD 145
Query: 469 ARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAA 648
R + E+ LQ E + E + L+AR ++ A+ RL +EA + EAA
Sbjct: 146 LRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRL--MEARKGADEAA 203
Query: 649 LSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQ 828
L+ R + E R+ +L +E+ F
Sbjct: 204 LA----------------------------------------RAELEKRIDSLMDEIAFL 223
Query: 829 KNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKTY 1008
K ++ EE+ E + + + + ++ + + L+ AL+D+RAQ+E + + E+ +
Sbjct: 224 KKVHEEEIAELQAQIQYAQISVEMDVSSKPD--LSAALKDIRAQYEKLAAKNMQNAEEWF 281
Query: 1009 SAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSL 1188
++ +SA +N++ V AA +E+ +SR + ++LED
Sbjct: 282 KSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQ 341
Query: 1189 ARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
+ + + E E+ ++ M +K+ALD+EI AYRK
Sbjct: 342 NADISAMQDTINKLENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRK 392
>ref|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus scrofa].
Length = 477
Score = 97.8 bits (242), Expect = 2e-20
Identities = 87/357 (24%), Positives = 150/357 (42%), Gaps = 3/357 (0%)
Frame = +1
Query: 280 RITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAE 459
+I R EKE LQ LNDR AV+I++V LET+N L EAE
Sbjct: 88 KIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRAL----------------------EAE 125
Query: 460 LGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSK 639
L R+ ++ Q EL ++R + +E + AQA L + + L
Sbjct: 126 LAALRQRHAEPSRVGELFQRELRELRAQLEEASSAR---------AQALL-ERDGLAEEV 175
Query: 640 EAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEEL 819
+ + E R EG L+ Q + L R+D E ++++L +EL
Sbjct: 176 QRLRARCEEESRGREGAERALKAQ-----------QRDVDGATLARLDLEKKVESLLDEL 224
Query: 820 DFQKNIYSEELRE---TKRRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKK 990
F + ++ EE+ E T + E+D + L+ AL+++RAQ+E + +
Sbjct: 225 AFVRQVHDEEVAELLATLQASSQAAAEVDVAVAKP---DLSSALREIRAQYESLAAKNLQ 281
Query: 991 ELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXR 1170
E+ Y +K N + A R++ + A+ EE+ + R ++
Sbjct: 282 SAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQIL 341
Query: 1171 DLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
+LE+ + E + + + E ++ ++ M +K+ALD+EI AYRK
Sbjct: 342 ELEERHSAEVASYQDNIGQLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRK 398
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.129 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,931,524
Number of extensions: 1038567
Number of successful extensions: 8475
Number of sequences better than 1.0e-05: 57
Number of HSP's gapped: 8151
Number of HSP's successfully gapped: 75
Length of query: 604
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 499
Effective length of database: 8,729,747
Effective search space: 4356143753
Effective search space used: 4356143753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008891
(1814 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001104572.1| prelamin-A/C isoform C [Mus musculus]. 817 0.0
Alignment gi|NP_001002011.2| prelamin-A/C isoform A [Mus musculus]. 817 0.0
Alignment gi|NP_062263.1| prelamin-A/C isoform C2 [Mus musculus]. 624 e-179
Alignment gi|NP_034851.2| lamin-B1 [Mus musculus]. 481 e-135
Alignment gi|NP_034852.2| lamin-B2 [Mus musculus]. 457 e-128
Alignment gi|NP_034173.1| desmin [Mus musculus]. 122 9e-28
Alignment gi|NP_001157061.1| peripherin isoform 3 [Mus musculus]. 115 9e-26
Alignment gi|NP_035831.2| vimentin [Mus musculus]. 113 6e-25
Alignment gi|NP_001124492.1| glial fibrillary acidic protein isoform 1 [M... 110 3e-24
Alignment gi|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus ... 110 3e-24
>ref|NP_001104572.1| prelamin-A/C isoform C [Mus musculus].
Length = 574
Score = 817 bits (2110), Expect = 0.0
Identities = 437/535 (81%), Positives = 446/535 (83%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
Sbjct: 1 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 60
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
LRIT GIK+AYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN
Sbjct: 61 LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 120
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
TKKEGDL+AAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 121 TKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAK 180
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR
Sbjct: 181 KQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 240
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
LADALQ+LRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID
Sbjct: 241 LADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 300
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
RDLEDSLARERDTSRRLLA+KEREMAEMRARM
Sbjct: 301 SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 360
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRK 1467
IKLALDMEIHAYRK SPSPTSQRSRGRA VTKKRK
Sbjct: 361 ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGGGSVTKKRK 420
Query: 1468 LXXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 1647
L QHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQI+RQNGDDPL+T
Sbjct: 421 LESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLMT 480
Query: 1648 YRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
YRFPPKFTLKAGQVVTIWA+GAGATHSPP DLVWK+QNTWGCG+SLRTALINSTG
Sbjct: 481 YRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTG 535
>ref|NP_001002011.2| prelamin-A/C isoform A [Mus musculus].
Length = 665
Score = 817 bits (2110), Expect = 0.0
Identities = 437/535 (81%), Positives = 446/535 (83%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
Sbjct: 1 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 60
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
LRIT GIK+AYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN
Sbjct: 61 LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 120
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
TKKEGDL+AAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 121 TKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAK 180
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR
Sbjct: 181 KQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 240
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
LADALQ+LRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID
Sbjct: 241 LADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 300
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
RDLEDSLARERDTSRRLLA+KEREMAEMRARM
Sbjct: 301 SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 360
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRK 1467
IKLALDMEIHAYRK SPSPTSQRSRGRA VTKKRK
Sbjct: 361 ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGGGSVTKKRK 420
Query: 1468 LXXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 1647
L QHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQI+RQNGDDPL+T
Sbjct: 421 LESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLMT 480
Query: 1648 YRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
YRFPPKFTLKAGQVVTIWA+GAGATHSPP DLVWK+QNTWGCG+SLRTALINSTG
Sbjct: 481 YRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTG 535
>ref|NP_062263.1| prelamin-A/C isoform C2 [Mus musculus].
Length = 462
Score = 624 bits (1610), Expect = e-179
Identities = 331/419 (78%), Positives = 340/419 (81%)
Frame = +1
Query: 556 KARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXX 735
+ RNTKKEGDL+AAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 5 EGRNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAAL 64
Query: 736 XXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQRE 915
QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQRE
Sbjct: 65 GEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQRE 124
Query: 916 FESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSR 1095
FESRLADALQ+LRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSR
Sbjct: 125 FESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSR 184
Query: 1096 IRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXX 1275
IRID RDLEDSLARERDTSRRLLA+KEREMAEMRARM
Sbjct: 185 IRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQL 244
Query: 1276 XXXXXXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVT 1455
IKLALDMEIHAYRK SPSPTSQRSRGRA VT
Sbjct: 245 DEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGGGSVT 304
Query: 1456 KKRKLXXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDD 1635
KKRKL QHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQI+RQNGDD
Sbjct: 305 KKRKLESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDD 364
Query: 1636 PLLTYRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
PL+TYRFPPKFTLKAGQVVTIWA+GAGATHSPP DLVWK+QNTWGCG+SLRTALINSTG
Sbjct: 365 PLMTYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTG 423
>ref|NP_034851.2| lamin-B1 [Mus musculus].
Length = 588
Score = 481 bits (1237), Expect = e-135
Identities = 254/537 (47%), Positives = 347/537 (64%), Gaps = 1/537 (0%)
Frame = +1
Query: 205 AMETPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGL 384
A TP Q++ S A A +TPLSPTR++RLQEKE+L+ELNDRLAVYID+VRSLETEN+ L
Sbjct: 2 ATATPVQQQRAGSRASAPATPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSAL 61
Query: 385 RLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKAR 564
+L++T G+K+ YE EL DAR+ LD A+ERA+LQ+EL K + E +L
Sbjct: 62 QLQVTEREEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKFKAEHDQLLLN 121
Query: 565 NTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXX 744
KKE DL AQ +L++ EA LNSK+AAL+TAL +K++LEG+L DL+ Q+
Sbjct: 122 YAKKESDLSGAQIKLREYEAALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLSAA 181
Query: 745 XXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFES 924
QL DE L +VD ENR Q+L E+L+F+KN+Y EE+ ET+R+HETRLVE+D+G+Q E+E
Sbjct: 182 KKQLADETLLKVDLENRCQSLTEDLEFRKNMYEEEINETRRKHETRLVEVDSGRQIEYEY 241
Query: 925 RLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRI 1104
+LA AL ++R QH+ QV YK+ELE+TY AKL+NAR S+E N++ V +A EEL +SR+RI
Sbjct: 242 KLAQALHEMREQHDAQVRLYKEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRI 301
Query: 1105 DXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXX 1284
+ ++LED LA+ERD SRR+L+D+EREMAE+R +M
Sbjct: 302 ESLSSQLSNLQKESRACLERIQELEDMLAKERDNSRRMLSDREREMAEIRDQMQQQLSDY 361
Query: 1285 XXXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKR 1464
+KLALDMEI AYRK SPSP+S+ + RA +
Sbjct: 362 EQLLDVKLALDMEISAYRKLLEGEEERLKLSPSPSSRVTVSRASSSRSVRTTRGKRKRVD 421
Query: 1465 KLXXXXXXXXXXQH-ARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPL 1641
H A +G V +EE+D +GKF+RL+N S +DQ MG W++ R+ GD
Sbjct: 422 VEESEASSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTS- 480
Query: 1642 LTYRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
++Y++ ++ LKAGQ VT+WAA AG T SPP DL+WK+QN+WG G ++ L NS G
Sbjct: 481 VSYKYTSRYVLKAGQTVTVWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQG 537
>ref|NP_034852.2| lamin-B2 [Mus musculus].
Length = 596
Score = 457 bits (1175), Expect = e-128
Identities = 249/535 (46%), Positives = 340/535 (63%), Gaps = 17/535 (3%)
Frame = +1
Query: 259 STPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGI 438
+TPLSPTR++RLQEKE+L+ELNDRLA YIDRVR+LE EN L LRI+ GI
Sbjct: 11 ATPLSPTRLSRLQEKEELRELNDRLAHYIDRVRALELENDRLLLRISEKEEVTTREVSGI 70
Query: 439 KSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDL 618
K+ YE+EL DAR+ LD A+ERARLQ+E+ KV+ E +E + K+EG+L AQ R+KDL
Sbjct: 71 KTLYESELADARRVLDETARERARLQIEIGKVQAELEEARKSAKKREGELTVAQGRVKDL 130
Query: 619 EALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRL 798
E+L + EA L+TALS+K+ LE E+ +LR Q+ QL+ E L RVD ENR
Sbjct: 131 ESLFHRSEAELATALSDKQGLETEVAELRAQLAKAEDGHAVAKKQLEKETLMRVDLENRC 190
Query: 799 QTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVE 978
Q+L+EEL F K+++ EE+RET+RRHE RLVE+D+ +Q+E++ ++A AL+DLR+QH++QV
Sbjct: 191 QSLQEELAFSKSVFEEEVRETRRRHERRLVEVDSSRQQEYDFKMAQALEDLRSQHDEQVR 250
Query: 979 QYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXX 1158
Y+ ELE+TY AKLDNA+ +++N AA EEL+++R+R++
Sbjct: 251 LYRVELEQTYQAKLDNAKLLSDQNDKAAHAAREELKEARMRVESLSYQLLGLQKQASAAE 310
Query: 1159 XXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYR 1338
+LE++LA ERD R++L KE+EM E+R M IKLALDMEI AYR
Sbjct: 311 NHIHELEEALAGERDKFRKMLDAKEQEMTEVRDAMQQQLAEYQELLDIKLALDMEISAYR 370
Query: 1339 KXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVT-----KKRKLXXXXXXXXXXQ 1503
K SPSP+S+ + RA K+R+L +
Sbjct: 371 KLLEGEEERLKLSPSPSSRITISRATSSSSSSSGVGMSVGQGRGKRRRLETEDTSGSPSR 430
Query: 1504 HARTS------------GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 1647
+R S G V ++EVD EG+FVRL+N S++DQS+GNW+IKRQ + +
Sbjct: 431 ASRVSSGSRLAQQTVATGVVNIDEVDPEGRFVRLKNSSDKDQSLGNWRIKRQVLEGEDIA 490
Query: 1648 YRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
Y+F PK+ L+AGQ VT+WAAGAGATHSPP+ LVWKSQ WG G S RTAL+++ G
Sbjct: 491 YKFTPKYVLRAGQTVTVWAAGAGATHSPPSTLVWKSQTNWGPGESFRTALVSADG 545
>ref|NP_034173.1| desmin [Mus musculus].
Length = 469
Score = 122 bits (306), Expect = 9e-28
Identities = 90/352 (25%), Positives = 155/352 (44%)
Frame = +1
Query: 286 TRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELG 465
TR EK +LQELNDR A YI++VR LE +NA L + + YE E+
Sbjct: 103 TRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTR---VAELYEEEMR 159
Query: 466 DARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEA 645
+ R+ ++ + +RAR+ +E + ++ + LKA+
Sbjct: 160 ELRRQVEVLTNQRARVDVERDNLIDDLQRLKAK--------------------------- 192
Query: 646 ALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDF 825
L + + E L R V L R+D E R+++L EE+ F
Sbjct: 193 -LQEEIQLREEAENNLAAFRADVDAAT--------------LARIDLERRIESLNEEIAF 237
Query: 826 QKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKT 1005
K ++ EE+RE + + + + V+++ + L AL+D+RAQ+E + E E+
Sbjct: 238 LKKVHEEEIRELQAQLQEQQVQVEMDMSKP---DLTAALRDIRAQYETIAAKNISEAEEW 294
Query: 1006 YSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDS 1185
Y +K+ + Q+A +N++ + A +E+ + R +I R+LED
Sbjct: 295 YKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDR 354
Query: 1186 LARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
A E + + +A E E+ ++ M +K+ALD+EI YRK
Sbjct: 355 FASEANGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRK 406
>ref|NP_001157061.1| peripherin isoform 3 [Mus musculus].
Length = 475
Score = 115 bits (289), Expect = 9e-26
Identities = 96/356 (26%), Positives = 161/356 (45%), Gaps = 4/356 (1%)
Frame = +1
Query: 286 TRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELG 465
TR EK++LQELNDR A +I++VR LE +NA LR ++ + + EL
Sbjct: 97 TRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQL---CQQELR 153
Query: 466 DARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEA 645
+ R+ L+ + +ER R+Q+E + E DL A + RL++
Sbjct: 154 ELRRELELLGRERDRVQVERDGLAE--------------DLAALKQRLEE---------- 189
Query: 646 ALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDF 825
E R E H+L + D L R++ E ++++L +E++F
Sbjct: 190 -------ETRKREDAEHNL-----------VLFRKDVDDATLSRLELERKIESLMDEIEF 231
Query: 826 QKNIYSEELRETKRRHETRLVEIDNGKQREFES----RLADALQDLRAQHEDQVEQYKKE 993
K ++ EELR+ + E++ V+ Q E E+ L AL+D+RAQ+E+ + +E
Sbjct: 232 LKKLHEEELRDLQVSVESQQVQ-----QVEVEATVKPELTAALRDIRAQYENIAAKNLQE 286
Query: 994 LEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRD 1173
E+ Y +K + +A RN + A +E+ +SR +I R+
Sbjct: 287 AEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLMCEVDGLRGTNEALLRQLRE 346
Query: 1174 LEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
LE+ A E + A E E+ +++ M +K+ALD+EI YRK
Sbjct: 347 LEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRK 402
>ref|NP_035831.2| vimentin [Mus musculus].
Length = 466
Score = 113 bits (282), Expect = 6e-25
Identities = 88/352 (25%), Positives = 159/352 (45%)
Frame = +1
Query: 286 TRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELG 465
TR EK +LQELNDR A YID+VR LE +N ++ + + YE E+
Sbjct: 99 TRTNEKVELQELNDRFANYIDKVRFLEQQN---KILLAELEQLKGQGKSRLGDLYEEEMR 155
Query: 466 DARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEA 645
+ R+ +D + ++AR+++E + E D+M + +L+ E +L +EA
Sbjct: 156 ELRRQVDQLTNDKARVEVERDNLAE--------------DIMRLREKLQ--EEMLQREEA 199
Query: 646 ALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDF 825
E L R V + L R+D E ++++L+EE+ F
Sbjct: 200 ------------ESTLQSFRQDV--------------DNASLARLDLERKVESLQEEIAF 233
Query: 826 QKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKT 1005
K ++ EE++E + + + + V+ID + L AL+D+R Q+E + +E E+
Sbjct: 234 LKKLHDEEIQELQAQIQEQHVQIDVDVSKP---DLTAALRDVRQQYESVAAKNLQEAEEW 290
Query: 1006 YSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDS 1185
Y +K + ++A RN++ + A +E + R ++ R++E++
Sbjct: 291 YKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEEN 350
Query: 1186 LARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
A E + + + E+ M+ M +K+ALD+EI YRK
Sbjct: 351 FALEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 402
>ref|NP_001124492.1| glial fibrillary acidic protein isoform 1 [Mus musculus].
Length = 428
Score = 110 bits (276), Expect = 3e-24
Identities = 103/397 (25%), Positives = 162/397 (40%), Gaps = 5/397 (1%)
Frame = +1
Query: 166 RDLCPAGSLATLPA-----METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDR 330
R L P+ L T+P M P R S A A + TR + E+ ++ ELNDR
Sbjct: 20 RGLGPSRQLGTMPRFSLSRMTPPLPARVDFSLAGALNAGFKETRAS---ERAEMMELNDR 76
Query: 331 LAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERAR 510
A YI++VR LE +N L + + Y+AEL + R LD + AR
Sbjct: 77 FASYIEKVRFLEQQNKALAAELNQLRAKEPTK---LADVYQAELRELRLRLDQLTANSAR 133
Query: 511 LQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGE 690
L++E R+ F + DL + +L+D L E L+ E
Sbjct: 134 LEVE----RDNFAQ----------DLGTLRQKLQDETNLRLEAENNLAAYRQEA------ 173
Query: 691 LHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRR 870
+ L RVD E ++++L+EE+ F + IY EE+RE + +
Sbjct: 174 ----------------------DEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQ 211
Query: 871 HETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERN 1050
+ V ++ + L AL+++R Q+E +E E+ Y +K + +A RN
Sbjct: 212 LAQQQVHVEMDVAK---PDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRN 268
Query: 1051 SNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADK 1230
+ L+ A E R ++ R+ E+ ARE + + LA
Sbjct: 269 AELLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARL 328
Query: 1231 EREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
E E ++ M +KLALD+EI YRK
Sbjct: 329 EEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRK 365
>ref|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus musculus].
Length = 430
Score = 110 bits (276), Expect = 3e-24
Identities = 103/397 (25%), Positives = 162/397 (40%), Gaps = 5/397 (1%)
Frame = +1
Query: 166 RDLCPAGSLATLPA-----METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDR 330
R L P+ L T+P M P R S A A + TR + E+ ++ ELNDR
Sbjct: 20 RGLGPSRQLGTMPRFSLSRMTPPLPARVDFSLAGALNAGFKETRAS---ERAEMMELNDR 76
Query: 331 LAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERAR 510
A YI++VR LE +N L + + Y+AEL + R LD + AR
Sbjct: 77 FASYIEKVRFLEQQNKALAAELNQLRAKEPTK---LADVYQAELRELRLRLDQLTANSAR 133
Query: 511 LQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGE 690
L++E R+ F + DL + +L+D L E L+ E
Sbjct: 134 LEVE----RDNFAQ----------DLGTLRQKLQDETNLRLEAENNLAAYRQEA------ 173
Query: 691 LHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRR 870
+ L RVD E ++++L+EE+ F + IY EE+RE + +
Sbjct: 174 ----------------------DEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQ 211
Query: 871 HETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERN 1050
+ V ++ + L AL+++R Q+E +E E+ Y +K + +A RN
Sbjct: 212 LAQQQVHVEMDVAK---PDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRN 268
Query: 1051 SNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADK 1230
+ L+ A E R ++ R+ E+ ARE + + LA
Sbjct: 269 AELLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARL 328
Query: 1231 EREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
E E ++ M +KLALD+EI YRK
Sbjct: 329 EEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRK 365
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.129 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,421,783
Number of extensions: 1294201
Number of successful extensions: 9582
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 9121
Number of HSP's successfully gapped: 93
Length of query: 604
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 497
Effective length of database: 12,403,707
Effective search space: 6164642379
Effective search space used: 6164642379
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008891
(1814 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_733822.1| prelamin-A/C isoform 3 [Homo sapiens]. 821 0.0
Alignment gi|NP_005563.1| prelamin-A/C isoform 2 [Homo sapiens]. 821 0.0
Alignment gi|NP_733821.1| prelamin-A/C isoform 1 precursor [Homo sapiens]. 821 0.0
Alignment gi|NP_005564.1| lamin-B1 isoform 1 [Homo sapiens]. 469 e-132
Alignment gi|NP_116126.2| lamin-B2 [Homo sapiens]. 457 e-128
Alignment gi|NP_001185486.1| lamin-B1 isoform 2 [Homo sapiens]. 273 3e-73
Alignment gi|NP_001918.3| desmin [Homo sapiens]. 124 2e-28
Alignment gi|NP_006253.2| peripherin [Homo sapiens]. 115 1e-25
Alignment gi|NP_003371.2| vimentin [Homo sapiens]. 113 7e-25
Alignment gi|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo... 105 1e-22
>ref|NP_733822.1| prelamin-A/C isoform 3 [Homo sapiens].
Length = 634
Score = 821 bits (2120), Expect = 0.0
Identities = 440/535 (82%), Positives = 446/535 (83%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
Sbjct: 1 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 60
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
LRIT GIK+AYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN
Sbjct: 61 LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 120
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
TKKEGDL+AAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 121 TKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAK 180
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QLQDEMLRRVDAENRLQT+KEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR
Sbjct: 181 KQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 240
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
LADALQ+LRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID
Sbjct: 241 LADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 300
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
RDLEDSLARERDTSRRLLA+KEREMAEMRARM
Sbjct: 301 SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 360
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRK 1467
IKLALDMEIHAYRK SPSPTSQRSRGRA VTKKRK
Sbjct: 361 ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGGGSVTKKRK 420
Query: 1468 LXXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 1647
L QHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT
Sbjct: 421 LESTESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 480
Query: 1648 YRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
YRFPPKFTLKAGQVVTIWAAGAGATHSPP DLVWK+QNTWGCGNSLRTALINSTG
Sbjct: 481 YRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTG 535
>ref|NP_005563.1| prelamin-A/C isoform 2 [Homo sapiens].
Length = 572
Score = 821 bits (2120), Expect = 0.0
Identities = 440/535 (82%), Positives = 446/535 (83%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
Sbjct: 1 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 60
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
LRIT GIK+AYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN
Sbjct: 61 LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 120
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
TKKEGDL+AAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 121 TKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAK 180
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QLQDEMLRRVDAENRLQT+KEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR
Sbjct: 181 KQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 240
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
LADALQ+LRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID
Sbjct: 241 LADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 300
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
RDLEDSLARERDTSRRLLA+KEREMAEMRARM
Sbjct: 301 SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 360
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRK 1467
IKLALDMEIHAYRK SPSPTSQRSRGRA VTKKRK
Sbjct: 361 ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGGGSVTKKRK 420
Query: 1468 LXXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 1647
L QHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT
Sbjct: 421 LESTESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 480
Query: 1648 YRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
YRFPPKFTLKAGQVVTIWAAGAGATHSPP DLVWK+QNTWGCGNSLRTALINSTG
Sbjct: 481 YRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTG 535
>ref|NP_733821.1| prelamin-A/C isoform 1 precursor [Homo sapiens].
Length = 664
Score = 821 bits (2120), Expect = 0.0
Identities = 440/535 (82%), Positives = 446/535 (83%)
Frame = +1
Query: 208 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 387
METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
Sbjct: 1 METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR 60
Query: 388 LRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 567
LRIT GIK+AYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN
Sbjct: 61 LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARN 120
Query: 568 TKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXX 747
TKKEGDL+AAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQV
Sbjct: 121 TKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAK 180
Query: 748 XQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 927
QLQDEMLRRVDAENRLQT+KEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR
Sbjct: 181 KQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESR 240
Query: 928 LADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 1107
LADALQ+LRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID
Sbjct: 241 LADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRID 300
Query: 1108 XXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXX 1287
RDLEDSLARERDTSRRLLA+KEREMAEMRARM
Sbjct: 301 SLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 360
Query: 1288 XXXXIKLALDMEIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRK 1467
IKLALDMEIHAYRK SPSPTSQRSRGRA VTKKRK
Sbjct: 361 ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGGGSVTKKRK 420
Query: 1468 LXXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 1647
L QHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT
Sbjct: 421 LESTESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLT 480
Query: 1648 YRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
YRFPPKFTLKAGQVVTIWAAGAGATHSPP DLVWK+QNTWGCGNSLRTALINSTG
Sbjct: 481 YRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTG 535
>ref|NP_005564.1| lamin-B1 isoform 1 [Homo sapiens].
Length = 586
Score = 469 bits (1208), Expect = e-132
Identities = 249/525 (47%), Positives = 339/525 (64%), Gaps = 1/525 (0%)
Frame = +1
Query: 241 SGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXX 420
S A +TPLSPTR++RLQEKE+L+ELNDRLAVYID+VRSLETEN+ L+L++T
Sbjct: 13 SRAGGPTTPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVTEREEVRG 72
Query: 421 XXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQ 600
G+K+ YE EL DAR+ LD A+ERA+LQ+EL K + E +L KKE DL AQ
Sbjct: 73 RELTGLKALYETELADARRALDDTARERAKLQIELGKCKAEHDQLLLNYAKKESDLNGAQ 132
Query: 601 ARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRV 780
+L++ EA LNSK+AAL+TAL +K++LEG+L DL+ Q+ QL DE L +V
Sbjct: 133 IKLREYEAALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLAAAKKQLADETLLKV 192
Query: 781 DAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQ 960
D ENR Q+L E+L+F+K++Y EE+ ET+R+HETRLVE+D+G+Q E+E +LA AL ++R Q
Sbjct: 193 DLENRCQSLTEDLEFRKSMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQ 252
Query: 961 HEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXX 1140
H+ QV YK+ELE+TY AKL+NAR S+E N++ V +A EEL +SR+RI+
Sbjct: 253 HDAQVRLYKEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIESLSSQLSNLQK 312
Query: 1141 XXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDM 1320
++LED LA+E+D SRR+L DKEREMAE+R +M +KLALDM
Sbjct: 313 ESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDM 372
Query: 1321 EIHAYRKXXXXXXXXXXXSPSPTSQRSRGRAXXXXXXXXXXXXVTKKRKLXXXXXXXXXX 1500
EI AYRK SPSP+S+ + RA +
Sbjct: 373 EISAYRKLLEGEEERLKLSPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSI 432
Query: 1501 QH-ARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLK 1677
H A +G V +EE+D +GKF+RL+N S +DQ MG W++ R+ GD ++Y++ ++ LK
Sbjct: 433 SHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTS-VSYKYTSRYVLK 491
Query: 1678 AGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINSTG 1812
AGQ VTIWAA AG T SPP DL+WK+QN+WG G ++ L NS G
Sbjct: 492 AGQTVTIWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQG 536
>ref|NP_116126.2| lamin-B2 [Homo sapiens].
Length = 600
Score = 457 bits (1177), Expect = e-128
Identities = 245/541 (45%), Positives = 343/541 (63%), Gaps = 19/541 (3%)
Frame = +1
Query: 247 AQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXX 426
A +TPLSPTR++RLQEKE+L+ELNDRLA YIDRVR+LE EN L L+I+
Sbjct: 9 AGGPATPLSPTRLSRLQEKEELRELNDRLAHYIDRVRALELENDRLLLKISEKEEVTTRE 68
Query: 427 XXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQAR 606
GIK+ YE+EL DAR+ LD A+ERARLQ+E+ K+R E E+ K+EG+L AQ R
Sbjct: 69 VSGIKALYESELADARRVLDETARERARLQIEIGKLRAELDEVNKSAKKREGELTVAQGR 128
Query: 607 LKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDA 786
+KDLE+L + E L+ ALS+KR LE ++ +LR Q+ QL+ E L RVD
Sbjct: 129 VKDLESLFHRSEVELAAALSDKRGLESDVAELRAQLAKAEDGHAVAKKQLEKETLMRVDL 188
Query: 787 ENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQHE 966
ENR Q+L+EELDF+K+++ EE+RET+RRHE RLVE+D+ +Q+E++ ++A AL++LR+QH+
Sbjct: 189 ENRCQSLQEELDFRKSVFEEEVRETRRRHERRLVEVDSSRQQEYDFKMAQALEELRSQHD 248
Query: 967 DQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXX 1146
+QV YK ELE+TY AKLD+A+ S+++N AA EEL+++R+R++
Sbjct: 249 EQVRLYKLELEQTYQAKLDSAKLSSDQNDKAASAAREELKEARMRLESLSYQLSGLQKQA 308
Query: 1147 XXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEI 1326
R+LE+++A ERD R++L KE+EM EMR M +KLALDMEI
Sbjct: 309 SAAEDRIRELEEAMAGERDKFRKMLDAKEQEMTEMRDVMQQQLAEYQELLDVKLALDMEI 368
Query: 1327 HAYRKXXXXXXXXXXXSPSPTSQRSRGRA---XXXXXXXXXXXXVTKKRKL--------- 1470
+AYRK SPSP+S+ + RA +K+++L
Sbjct: 369 NAYRKLLEGEEERLKLSPSPSSRVTVSRATSSSSGSLSATGRLGRSKRKRLEVEEPLGSG 428
Query: 1471 -------XXXXXXXXXXQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNG 1629
Q A SG V++EE+D EGKFV+L+N S++DQS+GNW+IKRQ
Sbjct: 429 PSVLGTGTGGSGGFHLAQQASASGSVSIEEIDLEGKFVQLKNNSDKDQSLGNWRIKRQVL 488
Query: 1630 DDPLLTYRFPPKFTLKAGQVVTIWAAGAGATHSPPADLVWKSQNTWGCGNSLRTALINST 1809
+ + Y+F PK+ L+AGQ+VT+WAAGAG HSPP+ LVWK Q++WG G S RT L+N+
Sbjct: 489 EGEEIAYKFTPKYILRAGQMVTVWAAGAGVAHSPPSTLVWKGQSSWGTGESFRTVLVNAD 548
Query: 1810 G 1812
G
Sbjct: 549 G 549
>ref|NP_001185486.1| lamin-B1 isoform 2 [Homo sapiens].
Length = 376
Score = 273 bits (699), Expect = 3e-73
Identities = 145/327 (44%), Positives = 200/327 (61%), Gaps = 1/327 (0%)
Frame = +1
Query: 835 IYSEELRETKRRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKTYSA 1014
+Y EE+ ET+R+HETRLVE+D+G+Q E+E +LA AL ++R QH+ QV YK+ELE+TY A
Sbjct: 1 MYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQHDAQVRLYKEELEQTYHA 60
Query: 1015 KLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLAR 1194
KL+NAR S+E N++ V +A EEL +SR+RI+ ++LED LA+
Sbjct: 61 KLENARLSSEMNTSTVNSAREELMESRMRIESLSSQLSNLQKESRACLERIQELEDLLAK 120
Query: 1195 ERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRKXXXXXXXXXXX 1374
E+D SRR+L DKEREMAE+R +M +KLALDMEI AYRK
Sbjct: 121 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERLKL 180
Query: 1375 SPSPTSQRSRGRAXXXXXXXXXXXXVTKKRKLXXXXXXXXXXQH-ARTSGRVAVEEVDEE 1551
SPSP+S+ + RA + H A +G V +EE+D +
Sbjct: 181 SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSISHSASATGNVCIEEIDVD 240
Query: 1552 GKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIWAAGAGATHSP 1731
GKF+RL+N S +DQ MG W++ R+ GD ++Y++ ++ LKAGQ VTIWAA AG T SP
Sbjct: 241 GKFIRLKNTSEQDQPMGGWEMIRKIGDTS-VSYKYTSRYVLKAGQTVTIWAANAGVTASP 299
Query: 1732 PADLVWKSQNTWGCGNSLRTALINSTG 1812
P DL+WK+QN+WG G ++ L NS G
Sbjct: 300 PTDLIWKNQNSWGTGEDVKVILKNSQG 326
>ref|NP_001918.3| desmin [Homo sapiens].
Length = 470
Score = 124 bits (312), Expect = 2e-28
Identities = 102/399 (25%), Positives = 168/399 (42%), Gaps = 6/399 (1%)
Frame = +1
Query: 163 SRDLCPAGSLATLPAMETPSQRRATRSGA------QASSTPLSPTRITRLQEKEDLQELN 324
SR AG L +L A + R + GA + TR EK +LQELN
Sbjct: 57 SRTSGGAGGLGSLRASRLGTTRTPSSYGAGELLDFSLADAVNQEFLTTRTNEKVELQELN 116
Query: 325 DRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKER 504
DR A YI++VR LE +NA L + + YE EL + R+ ++ + +R
Sbjct: 117 DRFANYIEKVRFLEQQNAALAAEVNRLKGREPTR---VAELYEEELRELRRQVEVLTNQR 173
Query: 505 ARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLE 684
AR+ +E + ++ + LKA+ L + K E
Sbjct: 174 ARVDVERDNLLDDLQRLKAK----------------------------LQEEIQLKEEAE 205
Query: 685 GELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETK 864
L R V L R+D E R+++L EE+ F K ++ EE+RE +
Sbjct: 206 NNLAAFRADVDAAT--------------LARIDLERRIESLNEEIAFLKKVHEEEIRELQ 251
Query: 865 RRHETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAE 1044
+ + + V+++ + L AL+D+RAQ+E + E E+ Y +K+ + Q+A
Sbjct: 252 AQLQEQQVQVEMDMSKP---DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAAN 308
Query: 1045 RNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLA 1224
+N++ + A +E+ + R +I R+LED A E + +A
Sbjct: 309 KNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIA 368
Query: 1225 DKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
E E+ ++ M +K+ALD+EI YRK
Sbjct: 369 RLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRK 407
>ref|NP_006253.2| peripherin [Homo sapiens].
Length = 470
Score = 115 bits (288), Expect = 1e-25
Identities = 96/356 (26%), Positives = 160/356 (44%), Gaps = 4/356 (1%)
Frame = +1
Query: 286 TRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELG 465
TR EK++LQELNDR A +I++VR LE +NA LR ++ + + EL
Sbjct: 93 TRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQL---CQQELR 149
Query: 466 DARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEA 645
+ R+ L+ + +ER R+Q+E + E DL A + RL++
Sbjct: 150 ELRRELELLGRERDRVQVERDGLAE--------------DLAALKQRLEE---------- 185
Query: 646 ALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDF 825
E R E H+L + D L R++ E ++++L +E++F
Sbjct: 186 -------ETRKREDAEHNL-----------VLFRKDVDDATLSRLELERKIESLMDEIEF 227
Query: 826 QKNIYSEELRETKRRHETRLVEIDNGKQREFES----RLADALQDLRAQHEDQVEQYKKE 993
K ++ EELR+ + E++ V+ Q E E+ L AL+D+RAQ+E + +E
Sbjct: 228 LKKLHEEELRDLQVSVESQQVQ-----QVEVEATVKPELTAALRDIRAQYESIAAKNLQE 282
Query: 994 LEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRD 1173
E+ Y +K + +A RN + A +E+ +SR +I R+
Sbjct: 283 AEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRE 342
Query: 1174 LEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
LE+ A E + A E E+ +++ M +K+ALD+EI YRK
Sbjct: 343 LEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRK 398
>ref|NP_003371.2| vimentin [Homo sapiens].
Length = 466
Score = 113 bits (282), Expect = 7e-25
Identities = 106/437 (24%), Positives = 185/437 (42%), Gaps = 19/437 (4%)
Frame = +1
Query: 88 SEPRASRPACSHLDQSLSLA*APRPSRDLCPAGSLATLPAMETPSQRRATRSGAQASSTP 267
S P +SR + ++ SL A RPS S +P ATRS A +
Sbjct: 22 SRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYAS--------SPGGVYATRSSAVRLRSS 73
Query: 268 LSPTRI-------------------TRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRL 390
+ R+ TR EK +LQELNDR A YID+VR LE +N ++
Sbjct: 74 VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQN---KI 130
Query: 391 RITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNT 570
+ + YE E+ + R+ +D + ++AR+++E + E
Sbjct: 131 LLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE---------- 180
Query: 571 KKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVXXXXXXXXXXXX 750
D+M + +L+ E +L +EA E L R V
Sbjct: 181 ----DIMRLREKLQ--EEMLQREEA------------ENTLQSFRQDV------------ 210
Query: 751 QLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRL 930
+ L R+D E ++++L+EE+ F K ++ EE++E + + + + V+ID + L
Sbjct: 211 --DNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSK---PDL 265
Query: 931 ADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDX 1110
AL+D+R Q+E + +E E+ Y +K + ++A RN++ + A +E + R ++
Sbjct: 266 TAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQS 325
Query: 1111 XXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKEREMAEMRARMXXXXXXXXX 1290
R++E++ A E + + + E+ M+ M
Sbjct: 326 LTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQD 385
Query: 1291 XXXIKLALDMEIHAYRK 1341
+K+ALD+EI YRK
Sbjct: 386 LLNVKMALDIEIATYRK 402
>ref|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo sapiens].
Length = 432
Score = 105 bits (262), Expect = 1e-22
Identities = 101/396 (25%), Positives = 159/396 (40%), Gaps = 2/396 (0%)
Frame = +1
Query: 160 PSRDLCPAGSLATLPAMETPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAV 339
P R L P G+ +L M P R S A A + TR + E+ ++ ELNDR A
Sbjct: 27 PGRRLGP-GTRLSLARMPPPLPTRVDFSLAGALNAGFKETRAS---ERAEMMELNDRFAS 82
Query: 340 YIDRVRSLETENAGLRLRITXXXXXXXXXXXGIKSAYEAELGDARKTLDSVAKERARLQL 519
YI++VR LE +N L + + Y+AEL + R LD + ARL++
Sbjct: 83 YIEKVRFLEQQNKALAAELNQLRAKEPTK---LADVYQAELRELRLRLDQLTANSARLEV 139
Query: 520 ELSKVREEFKELKARNTKKEGDLMAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHD 699
E + + DL + +L+D L E L+ E
Sbjct: 140 ERDNLAQ--------------DLATVRQKLQDETNLRLEAENNLAAYRQEA--------- 176
Query: 700 LRGQVXXXXXXXXXXXXQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRR--H 873
+ L R+D E ++++L+EE+ F + I+ EE+RE + +
Sbjct: 177 -------------------DEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLAR 217
Query: 874 ETRLVEIDNGKQREFESRLADALQDLRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNS 1053
+ VE+D K L AL+++R Q+E E E+ Y +K + +A RN+
Sbjct: 218 QQVHVELDVAKPD-----LTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNA 272
Query: 1054 NLVGAAHEELQQSRIRIDXXXXXXXXXXXXXXXXXXXXRDLEDSLARERDTSRRLLADKE 1233
L+ A E R ++ R+ E+ RE + + LA E
Sbjct: 273 ELLRQAKHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLE 332
Query: 1234 REMAEMRARMXXXXXXXXXXXXIKLALDMEIHAYRK 1341
E ++ M +KLALD+EI YRK
Sbjct: 333 EEGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRK 368
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.129 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,573,538
Number of extensions: 1591224
Number of successful extensions: 12759
Number of sequences better than 1.0e-05: 84
Number of HSP's gapped: 12219
Number of HSP's successfully gapped: 126
Length of query: 604
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 496
Effective length of database: 14,737,052
Effective search space: 7309577792
Effective search space used: 7309577792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008891
(1814 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1114 0.0
Sscrofa_Chr02 180 2e-42
Sscrofa_Chr05 98 2e-17
Sscrofa_Chr12 74 3e-10
>Sscrofa_Chr04
|| Length = 143465943
Score = 1114 bits (562), Expect = 0.0
Identities = 562/562 (100%)
Strand = Plus / Minus
Query: 2 agtgttcgcgggagcgccgcatccacaccggccaacccagatcctgaggacgacagcgtc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102661829 agtgttcgcgggagcgccgcatccacaccggccaacccagatcctgaggacgacagcgtc 102661770
Query: 62 tggcccagatccccacgcctgccaggagcgagccgagagccagccggccggcgtgctccc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102661769 tggcccagatccccacgcctgccaggagcgagccgagagccagccggccggcgtgctccc 102661710
Query: 122 acctcgatcagtctctgtccttggcctgagccccgcgcccttcccgggacctctgccccg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102661709 acctcgatcagtctctgtccttggcctgagccccgcgcccttcccgggacctctgccccg 102661650
Query: 182 cgggcagccttgccaccctgccggccatggagaccccgtcccagcggcgcgccacccgca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102661649 cgggcagccttgccaccctgccggccatggagaccccgtcccagcggcgcgccacccgca 102661590
Query: 242 gcggggcgcaggccagctccaccccgctgtcgcccacccgcatcacccggctacaggaga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102661589 gcggggcgcaggccagctccaccccgctgtcgcccacccgcatcacccggctacaggaga 102661530
Query: 302 aggaggacctgcaggagctcaatgaccgcttggcggtttacatcgaccgtgtgcgctcac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102661529 aggaggacctgcaggagctcaatgaccgcttggcggtttacatcgaccgtgtgcgctcac 102661470
Query: 362 tggagacggagaatgcaggtctgcgccttcgcatcaccgagtctgaagaggtggtcagtc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102661469 tggagacggagaatgcaggtctgcgccttcgcatcaccgagtctgaagaggtggtcagtc 102661410
Query: 422 gcgaggtgtctggcatcaagtctgcctacgaggccgagctcggggatgcccgcaagaccc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102661409 gcgaggtgtctggcatcaagtctgcctacgaggccgagctcggggatgcccgcaagaccc 102661350
Query: 482 tcgactcggtggccaaggagcgcgcccgcctgcagctggagctgagcaaagtccgcgagg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102661349 tcgactcggtggccaaggagcgcgcccgcctgcagctggagctgagcaaagtccgcgagg 102661290
Query: 542 agttcaaggagctcaaggcacg 563
||||||||||||||||||||||
Sbjct: 102661289 agttcaaggagctcaaggcacg 102661268
Score = 448 bits (226), Expect = e-123
Identities = 226/226 (100%)
Strand = Plus / Minus
Query: 1363 aggctacgcctgtcccccagcccgacctcgcagcgcagccgcggccgggcctcttcccac 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102645242 aggctacgcctgtcccccagcccgacctcgcagcgcagccgcggccgggcctcttcccac 102645183
Query: 1423 tcgtcccagacgcagagtgggggcagcgtcaccaaaaagcgcaagctggagtccagtgag 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102645182 tcgtcccagacgcagagtgggggcagcgtcaccaaaaagcgcaagctggagtccagtgag 102645123
Query: 1483 agccgcagcagcttctcccagcacgctcgcaccagcggccgtgtggccgtggaggaggtg 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102645122 agccgcagcagcttctcccagcacgctcgcaccagcggccgtgtggccgtggaggaggtg 102645063
Query: 1543 gacgaggagggcaagttcgtgcgcctgcgcaacaagtccaatgagg 1588
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102645062 gacgaggagggcaagttcgtgcgcctgcgcaacaagtccaatgagg 102645017
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Minus
Query: 1141 cagctggcagccaaggaggccaagctgcgggacctggaggactcgctggcccgtgagcgt 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102645557 cagctggcagccaaggaggccaagctgcgggacctggaggactcgctggcccgtgagcgt 102645498
Query: 1201 gacaccagccggcggctgctggccgacaaggagcgggagatggcggagatgcgggcaagg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102645497 gacaccagccggcggctgctggccgacaaggagcgggagatggcggagatgcgggcaagg 102645438
Query: 1261 atgcagcagcagctggacgagtaccaggagctgctggacatcaagctggccctggacatg 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102645437 atgcagcagcagctggacgagtaccaggagctgctggacatcaagctggccctggacatg 102645378
Query: 1321 gagatccacgcctaccgcaagctcctggagggcgaggaggagagg 1365
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102645377 gagatccacgcctaccgcaagctcctggagggcgaggaggagagg 102645333
Score = 335 bits (169), Expect = 5e-89
Identities = 172/173 (99%)
Strand = Plus / Minus
Query: 845 aggagcttcgggagaccaagcgccgccatgagacgcggctggtggagattgataatggga 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102646583 aggagcttcgggagaccaagcgccgccatgagacgcggctggtggagattgataatggga 102646524
Query: 905 agcagcgcgagtttgagagccggctggcagatgccctgcaggacctgcgggcccagcacg 964
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 102646523 agcagcgcgagtttgagagccggctggcagatgccctgcaggagctgcgggcccagcacg 102646464
Query: 965 aggaccaggtggaacagtacaagaaggagctggagaagacctattctgccaag 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102646463 aggaccaggtggaacagtacaagaaggagctggagaagacctattctgccaag 102646411
Score = 305 bits (154), Expect = 5e-80
Identities = 157/158 (99%)
Strand = Plus / Minus
Query: 563 gcaataccaagaaggagggagacttgatggctgcccaggcccggctcaaggacctggagg 622
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 102649347 gcaataccaagaaggagggagacttgatggccgcccaggcccggctcaaggacctggagg 102649288
Query: 623 ctctgctcaactccaaggaggcagcactgagcaccgctctcagcgagaagcgcacgctgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102649287 ctctgctcaactccaaggaggcagcactgagcaccgctctcagcgagaagcgcacgctgg 102649228
Query: 683 aaggcgagctgcatgacctgcgaggacaagtggccaag 720
||||||||||||||||||||||||||||||||||||||
Sbjct: 102649227 aaggcgagctgcatgacctgcgaggacaagtggccaag 102649190
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 719 agctcgaggcagccctgggtgaggccaagaaacaacttcaggatgagatgctgcgccgag 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102646977 agctcgaggcagccctgggtgaggccaagaaacaacttcaggatgagatgctgcgccgag 102646918
Query: 779 tggatgccgagaacaggctgcagaccctgaaggaggagctggacttccagaagaacattt 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102646917 tggatgccgagaacaggctgcagaccctgaaggaggagctggacttccagaagaacattt 102646858
Query: 839 acagcgagg 847
|||||||||
Sbjct: 102646857 acagcgagg 102646849
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 1016 agctggataacgccaggcagtcggccgagaggaacagcaacctggtgggggccgcccacg 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102646211 agctggataacgccaggcagtcggccgagaggaacagcaacctggtgggggccgcccacg 102646152
Query: 1076 aggagctgcagcagtcccgcatccgcatcgacagcctctcggcccagctcagccagctcc 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102646151 aggagctgcagcagtcccgcatccgcatcgacagcctctcggcccagctcagccagctcc 102646092
Query: 1136 agaagcag 1143
||||||||
Sbjct: 102646091 agaagcag 102646084
Score = 238 bits (120), Expect = 9e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 1695 gatctgggctgcgggagcgggggccacccacagccccccagccgacttggtgtggaagtc 1754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102644367 gatctgggctgcgggagcgggggccacccacagccccccagccgacttggtgtggaagtc 102644308
Query: 1755 gcagaacacctggggctgcggaaacagcctgcgcacggctctcatcaactccactgggga 1814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102644307 gcagaacacctggggctgcggaaacagcctgcgcacggctctcatcaactccactgggga 102644248
Score = 218 bits (110), Expect = 8e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1586 aggaccagtccatgggcaactggcagatcaagcgccagaatggagatgatcccttgctga 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102644583 aggaccagtccatgggcaactggcagatcaagcgccagaatggagatgatcccttgctga 102644524
Query: 1646 cctaccgcttccctccaaagttcactctgaaggccgggcaggtggtgacg 1695
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102644523 cctaccgcttccctccaaagttcactctgaaggccgggcaggtggtgacg 102644474
>Sscrofa_Chr02
|| Length = 162569375
Score = 180 bits (91), Expect = 2e-42
Identities = 127/139 (91%)
Strand = Plus / Plus
Query: 1227 caaggagcgggagatggcggagatgcgggcaaggatgcagcagcagctggacgagtacca 1286
|||||||||||||||| | |||||||||| ||||||||||||||||| ||||||||
Sbjct: 76692976 caaggagcgggagatgacagagatgcgggatgtgatgcagcagcagctggctgagtacca 76693035
Query: 1287 ggagctgctggacatcaagctggccctggacatggagatccacgcctaccgcaagctcct 1346
||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct: 76693036 ggagctgctggacgtcaagctggccctggatatggagatcaacgcctaccgcaaactcct 76693095
Query: 1347 ggagggcgaggaggagagg 1365
|||||||||||||||||||
Sbjct: 76693096 ggagggcgaggaggagagg 76693114
Score = 75.8 bits (38), Expect = 8e-11
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 265 ccgctgtcgcccacccgcatcacccggctacaggagaaggaggacctgcaggagctcaat 324
|||||||||||||| ||| | | ||||| |||||||||||||| |||| |||||||||
Sbjct: 76677560 ccgctgtcgcccacgcgcctgtcgcggctgcaggagaaggaggagctgcgcgagctcaat 76677619
Query: 325 gaccgcttggcggtttacatcgaccg 350
|||||||||||| |||||||||||
Sbjct: 76677620 gaccgcttggcgcactacatcgaccg 76677645
>Sscrofa_Chr05
|| Length = 111506441
Score = 97.6 bits (49), Expect = 2e-17
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 1279 gagtaccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccgc 1338
||||||||||||||| || || ||||||||||||||||||| |||||| | ||||||||
Sbjct: 18157344 gagtaccaggagctgatgaacgtcaagctggccctggacatcgagatcgccacctaccgc 18157403
Query: 1339 aagctcctggagggcgaggag 1359
||||| |||||||||||||||
Sbjct: 18157404 aagctgctggagggcgaggag 18157424
Score = 97.6 bits (49), Expect = 2e-17
Identities = 73/81 (90%)
Strand = Plus / Minus
Query: 1279 gagtaccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccgc 1338
||||||||||||||| || || ||||||||||||||||||| |||||| | ||||||||
Sbjct: 18263475 gagtaccaggagctgatgaacgtcaagctggccctggacatcgagatcgccacctaccgc 18263416
Query: 1339 aagctcctggagggcgaggag 1359
||||| |||||||||||||||
Sbjct: 18263415 aagctgctggagggcgaggag 18263395
Score = 83.8 bits (42), Expect = 3e-13
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 1282 taccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccgcaag 1341
|||||||||||| || | |||||||||||||||| |||||||| | |||||||||||
Sbjct: 18571176 taccaggagctgatgaatgtcaagctggccctggatgtggagatcgccacctaccgcaag 18571117
Query: 1342 ctcctggagggcgaggag 1359
||||||||||||||||||
Sbjct: 18571116 ctcctggagggcgaggag 18571099
Score = 75.8 bits (38), Expect = 8e-11
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 1278 cgagtaccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccg 1337
||||||||||||||| || || ||||||||||||||||| |||||| | |||||||
Sbjct: 18442971 cgagtaccaggagctcatgagcacaaagctggccctggacatcgagatcgccacctaccg 18442912
Query: 1338 caagctcctggagggcgaggag 1359
|||||| |||||||||||||||
Sbjct: 18442911 caagctgctggagggcgaggag 18442890
Score = 75.8 bits (38), Expect = 8e-11
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 1282 taccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccgcaag 1341
|||||||||||||||| | ||||||| || ||||| |||||||| | |||||||||||
Sbjct: 18523744 taccaggagctgctgggaaccaagctgtccttggacgtggagatcgccacctaccgcaag 18523685
Query: 1342 ctcctggagggcgaggag 1359
|| |||||||||||||||
Sbjct: 18523684 ctgctggagggcgaggag 18523667
Score = 73.8 bits (37), Expect = 3e-10
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 1279 gagtaccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccgc 1338
|||||||||||||| || || ||||| ||||||||||||| |||||| | |||||||
Sbjct: 15694018 gagtaccaggagctcctcaacgtcaagatggccctggacatcgagatcgccacctaccgg 15694077
Query: 1339 aagctcctggagggcgaggag 1359
||||| |||||||||||||||
Sbjct: 15694078 aagctgctggagggcgaggag 15694098
Score = 73.8 bits (37), Expect = 3e-10
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 1279 gagtaccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccgc 1338
|||||||||||||| || ||| |||||||||||||||| |||||||| | ||||| |
Sbjct: 18370110 gagtaccaggagctcatgaacaccaagctggccctggacgtggagatcgccacctacagg 18370169
Query: 1339 aagctcctggagggcgaggag 1359
||||| |||||||||||||||
Sbjct: 18370170 aagctgctggagggcgaggag 18370190
Score = 73.8 bits (37), Expect = 3e-10
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 1303 aagctggccctggacatggagatccacgcctaccgcaagctcctggagggcgaggag 1359
||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct: 18409758 aagctggccttggacatggagatcgccacctaccgcaagctgctggagggcgaggag 18409702
Score = 73.8 bits (37), Expect = 3e-10
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 1279 gagtaccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccgc 1338
||||||||||| ||| || | ||||||||||||||||| |||||||| | ||||||||
Sbjct: 18664277 gagtaccaggaactgatgaatgtcaagctggccctggacgtggagatcgccacctaccgc 18664218
Query: 1339 aagctcctggagggcgaggag 1359
||||| |||||||| ||||||
Sbjct: 18664217 aagctgctggagggagaggag 18664197
Score = 67.9 bits (34), Expect = 2e-08
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 1282 taccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccgcaag 1341
|||||||||||| || | | ||||||||| ||||||| |||||| | |||||||||||
Sbjct: 18586322 taccaggagctgatgagcgtgaagctggccttggacattgagatcgccacctaccgcaag 18586263
Query: 1342 ctcctggagggcgaggag 1359
|| |||||||||||||||
Sbjct: 18586262 ctgctggagggcgaggag 18586245
Score = 65.9 bits (33), Expect = 7e-08
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 1303 aagctggccctggacatggagatccacgcctaccgcaagctcctggagggcgaggag 1359
||||||||||||||| |||||||| | ||||||||||||| || ||||||||||||
Sbjct: 18385554 aagctggccctggacgtggagatcgccacctaccgcaagctgctagagggcgaggag 18385498
Score = 65.9 bits (33), Expect = 7e-08
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 1303 aagctggccctggacatggagatccacgcctaccgcaagctcctggagggcgaggag 1359
||||||||| |||||||||||||| | ||||||||||||| |||||| ||||||||
Sbjct: 18480010 aagctggccttggacatggagatcgccacctaccgcaagctgctggagagcgaggag 18479954
Score = 65.9 bits (33), Expect = 7e-08
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 1278 cgagtaccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccg 1337
|||||||||||||||| || | | |||||||||||||| |||||||| | |||||||
Sbjct: 18618902 cgagtaccaggagctgatgagcttgaagctggccctggatgtggagatcgccacctaccg 18618843
Query: 1338 caagctcctggagggcgagga 1358
|| ||| ||||||||||||||
Sbjct: 18618842 caggctgctggagggcgagga 18618822
Score = 63.9 bits (32), Expect = 3e-07
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 1272 gctggacgagtaccaggagctgctggacatcaagctggccctggacatggagatccacgc 1331
|||| |||||||||||||||| || ||||||||||||| |||||| |||||||| | |
Sbjct: 18100053 gctgcacgagtaccaggagctcatgaacatcaagctggctctggacgtggagatcgccac 18099994
Query: 1332 ctaccgcaagctcctggagggcgaggag 1359
|||| | ||||| || ||||| ||||||
Sbjct: 18099993 ctacaggaagctgctagagggagaggag 18099966
Score = 63.9 bits (32), Expect = 3e-07
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 1272 gctggacgagtaccaggagctgctggacatcaagctggccctggacatggagatccacgc 1331
|||| |||||||||||||||| || ||||||||||||| |||||| |||||||| | |
Sbjct: 18279023 gctgcacgagtaccaggagctcatgaacatcaagctggctctggacgtggagatcgccac 18278964
Query: 1332 ctaccgcaagctcctggagggcgaggag 1359
|||| | ||||| || ||||| ||||||
Sbjct: 18278963 ctacaggaagctgctagagggagaggag 18278936
Score = 60.0 bits (30), Expect = 4e-06
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 1282 taccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccgcaag 1341
|||||||||||| || || |||||||||| |||| ||||||| | |||||||||||
Sbjct: 18428253 taccaggagctgatgaacgtcaagctggctttggatgtggagattgccacctaccgcaag 18428194
Query: 1342 ctcctggagggcgaggag 1359
|| |||||||||||||||
Sbjct: 18428193 ctgctggagggcgaggag 18428176
>Sscrofa_Chr12
|| Length = 63588571
Score = 73.8 bits (37), Expect = 3e-10
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 1279 gagtaccaggagctgctggacatcaagctggccctggacatggagatccacgcctaccgc 1338
||||||||||||||||| || | ||||||||||||||||| |||||| | ||||| |
Sbjct: 18705894 gagtaccaggagctgctcaacgttaagctggccctggacatcgagatcgccacctacagg 18705953
Query: 1339 aagctcctggagggcgaggag 1359
||||| |||||||||||||||
Sbjct: 18705954 aagctgctggagggcgaggag 18705974
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,694,809
Number of extensions: 317
Number of successful extensions: 317
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 28
Length of query: 1814
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1792
Effective length of database: 2,808,408,574
Effective search space: 5032668164608
Effective search space used: 5032668164608
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)