Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008895
(1097 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991375.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 433 e-121
Alignment gi|NP_001002882.1| CMP-N-acetylneuraminate-beta-1,4-galactoside... 147 6e-39
Alignment gi|NP_001002883.1| type 2 lactosamine alpha-2,3-sialyltransfera... 137 2e-32
Alignment gi|NP_991376.2| lactosylceramide alpha-2,3-sialyltransferase [B... 123 6e-31
Alignment gi|NP_001091452.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 83 2e-16
Alignment gi|NP_001002892.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 82 4e-16
Alignment gi|XP_001256982.1| PREDICTED: ST3 beta-galactoside alpha-2,3-si... 81 1e-15
Alignment gi|NP_001008668.2| beta-galactoside alpha-2,6-sialyltransferase... 58 2e-08
Alignment gi|NP_803483.1| beta-galactoside alpha-2,6-sialyltransferase 1 ... 53 4e-07
Alignment gi|NP_001069001.1| alpha-N-acetylgalactosaminide alpha-2,6-sial... 53 4e-07
>ref|NP_991375.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 4 [Bos taurus].
Length = 333
Score = 433 bits (1114), Expect = e-121
Identities = 211/238 (88%), Positives = 216/238 (90%)
Frame = +1
Query: 193 MISKCRWKXXXXXXXXXXXXXWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFG 372
MISK RWK WYSISREDRYIELFYFP+ KKEPCLQGEAE+ VSKLFG
Sbjct: 1 MISKSRWKLLAMLALFLAVMVWYSISREDRYIELFYFPVPGKKEPCLQGEAEKMVSKLFG 60
Query: 373 NYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRC 552
NYS+EQP FLQLKDYFWVKTPS YELPYGTKGSEDLLLRVLAITSYSIPESIQ LKCRRC
Sbjct: 61 NYSREQPFFLQLKDYFWVKTPSLYELPYGTKGSEDLLLRVLAITSYSIPESIQSLKCRRC 120
Query: 553 VVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVE 732
VVVGNGHRLRNS LGEAINKYDVVIRLN+APVAGYE DVGSKTTMRLFYPESAHFNPKVE
Sbjct: 121 VVVGNGHRLRNSSLGEAINKYDVVIRLNSAPVAGYEQDVGSKTTMRLFYPESAHFNPKVE 180
Query: 733 DNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFME 906
DNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPF+ME
Sbjct: 181 DNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFYME 238
Score = 81.3 bits (199), Expect = 1e-15
Identities = 41/76 (53%), Positives = 47/76 (61%)
Frame = +2
Query: 869 PNRFEFSTPSSWRIAADKLLRLPMXXXXXXXXXXXXGLLAITLXXSLCDLXHIAGFGYPD 1048
P + P IAADKLL LP+ GLLAITL LCDL HIAGFGYPD
Sbjct: 226 PKQIRILNPFYMEIAADKLLSLPIHQPHKIKQKPTTGLLAITLALHLCDLVHIAGFGYPD 285
Query: 1049 AXKQKESIHYYEQITI 1096
A ++K+SIHYYE IT+
Sbjct: 286 AHQKKQSIHYYEYITL 301
>ref|NP_001002882.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase [Bos taurus].
Length = 374
Score = 147 bits (372), Expect(2) = 6e-39
Identities = 77/198 (38%), Positives = 117/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 328 CLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITS 507
C G A ++ +F +S+ P+FL W + + P+G KG ++L+ +L++T
Sbjct: 85 CKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIRE-FVPPFGIKGQDNLIKAILSVTK 143
Query: 508 -YSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
Y + ++ L CRRC++VGNG L N LG I+ YD+V+RLN+APV G+E DVGSKTT
Sbjct: 144 EYRLTPALDSLSCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPVKGFEKDVGSKTT 203
Query: 685 MRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESIL-SDKKRVRKGFWKQPPLIWD 861
+R+ YPE A P+ + D+L VL FK DF W++ I+ ++ GFWK
Sbjct: 204 LRITYPEGAMQRPEQYER-DSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVP 262
Query: 862 VNPKQIRILNPFFMENCS 915
P +IRILNP+F++ +
Sbjct: 263 KEPPEIRILNPYFIQEAA 280
Score = 32.3 bits (72), Expect(2) = 6e-39
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G +A+T+ CD +AGFGY D +HYYE +
Sbjct: 302 GSVAVTMALHGCDEVAVAGFGY-DMSTPNAPLHYYEAV 338
>ref|NP_001002883.1| type 2 lactosamine alpha-2,3-sialyltransferase [Bos taurus].
Length = 331
Score = 137 bits (344), Expect = 2e-32
Identities = 69/153 (45%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +1
Query: 442 YELPYGTKGSED-LLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYD 618
++LPYG K S L + + + I + + C++CVVVGNG L+N LGE I+ YD
Sbjct: 81 FDLPYGMKASATHFRLALWKLPNCDIFDEFDNVPCKKCVVVGNGGILKNKTLGEKIDSYD 140
Query: 619 VVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIES 798
V+IR+NN PV G+E +VG +TT RLFYPES +P D P+T ++L AFK +D W+
Sbjct: 141 VIIRMNNGPVLGHEEEVGRRTTFRLFYPESVFSDPNHND-PNTTVILTAFKPLDLKWLWE 199
Query: 799 ILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPF 897
+L+ K GFWK+P L P QIRIL+P+
Sbjct: 200 LLTGGKISPNGFWKEPALNLIYKPYQIRILDPY 232
>ref|NP_991376.2| lactosylceramide alpha-2,3-sialyltransferase [Bos taurus].
Length = 420
Score = 123 bits (309), Expect(2) = 6e-31
Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 13/227 (5%)
Frame = +1
Query: 265 ISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFGN-YSQEQPIFLQLKDYFWVKTPSA 441
I R +Y + +L+K+ C A+R +++LFG+ YS + P F+ K P+
Sbjct: 107 IKRAQQYAQ----QVLQKE--CRPQFAKRSMAQLFGSRYSLDLPPFV-------TKVPAE 153
Query: 442 ------YELPYGTK---GSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLL 594
Y+ P+G + G LL +L + PE ++ C+ CVV+G+G L +
Sbjct: 154 SEAEYKYDPPFGFRKFSGKVQTLLELLP--EHDFPEHLRAKSCKHCVVIGSGGILHGLEM 211
Query: 595 GEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKA 774
G A+N++DVVIRLNNAPV GY VG+KTT+R+ YPE A + +E L V V FK+
Sbjct: 212 GHALNQFDVVIRLNNAPVEGYSEHVGNKTTIRMTYPEGAPLS-DLEYYSSDLFVTVLFKS 270
Query: 775 MDFHWIESILSDKKR---VRKGFWKQPPLIWDVNPKQIRILNPFFME 906
+DF+W+++++ ++ VR FWKQ + PKQ RILNP ++
Sbjct: 271 VDFNWLQAMVKNETLPFWVRLFFWKQVAEKIPLQPKQFRILNPVIIK 317
Score = 29.6 bits (65), Expect(2) = 6e-31
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G++A+ L LCD +AGF Y + + +HY++ +
Sbjct: 344 GVIAVVLATHLCDEVSLAGFSYA-LNQPRTPLHYFDNL 380
>ref|NP_001091452.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Bos taurus].
Length = 339
Score = 82.8 bits (203), Expect(2) = 2e-16
Identities = 51/122 (41%), Positives = 67/122 (54%)
Frame = +1
Query: 541 CRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFN 720
CRRC VVGN LR S G I+ +D V+R+N AP AG+E DVG KTT L YPES F
Sbjct: 138 CRRCAVVGNSGNLRESWYGPQIDSHDFVLRMNKAPTAGFEADVGRKTTHHLVYPES--FR 195
Query: 721 PKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFF 900
E + +VLV FK +D W+ S + K + + P I V +I I +P F
Sbjct: 196 ELAE---NVSMVLVPFKTVDLEWVIS-ATTKGTISHTYVPVPAKI-KVKKNKILIYHPAF 250
Query: 901 ME 906
++
Sbjct: 251 IK 252
Score = 21.9 bits (45), Expect(2) = 2e-16
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYE 1084
G+L++ +CD + GFG A + HY+E
Sbjct: 269 GILSVIFSLHVCDEVDLYGFG---ADSKGNWHHYWE 301
>ref|NP_001002892.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Bos taurus].
Length = 350
Score = 81.6 bits (200), Expect(2) = 4e-16
Identities = 48/123 (39%), Positives = 70/123 (56%)
Frame = +1
Query: 538 KCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHF 717
+CRRC VVGN LR S G ++ ++ ++R+N AP G+E DVGS+TT YPESA
Sbjct: 148 QCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAPTVGFEQDVGSRTTHHFMYPESAKN 207
Query: 718 NPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPF 897
P + VLV FKA+D WI S LS ++R + + V+ ++++I NP
Sbjct: 208 LP-----ANVSFVLVPFKALDLLWIASALS-TGQIRFTYAPVKSFL-RVDKEKVQIYNPA 260
Query: 898 FME 906
F +
Sbjct: 261 FFK 263
Score = 21.9 bits (45), Expect(2) = 4e-16
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYE 1084
G+L + +CD ++ GFG A + HY+E
Sbjct: 280 GMLVLFFALHVCDEVNVYGFG---ADSRGNWHHYWE 312
>ref|XP_001256982.1| PREDICTED: ST3 beta-galactoside alpha-2,3-sialyltransferase 4-like,
partial [Bos taurus].
Length = 124
Score = 81.3 bits (199), Expect = 1e-15
Identities = 41/76 (53%), Positives = 47/76 (61%)
Frame = +2
Query: 869 PNRFEFSTPSSWRIAADKLLRLPMXXXXXXXXXXXXGLLAITLXXSLCDLXHIAGFGYPD 1048
P + P IAADKLL LP+ GLLAITL LCDL HIAGFGYPD
Sbjct: 17 PKQIRILNPFYMEIAADKLLSLPIHQPHKIKQKPTTGLLAITLALHLCDLVHIAGFGYPD 76
Query: 1049 AXKQKESIHYYEQITI 1096
A ++K+SIHYYE IT+
Sbjct: 77 AHQKKQSIHYYEYITL 92
Score = 67.0 bits (162), Expect = 3e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +1
Query: 820 VRKGFWKQPPLIWDVNPKQIRILNPFFME 906
VRKGFWKQPPLIWDVNPKQIRILNPF+ME
Sbjct: 1 VRKGFWKQPPLIWDVNPKQIRILNPFYME 29
>ref|NP_001008668.2| beta-galactoside alpha-2,6-sialyltransferase 2 [Bos taurus].
Length = 495
Score = 57.8 bits (138), Expect = 2e-08
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +1
Query: 517 PESIQRLKCRR---CVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTM 687
P + RL RR C VV + + NS LGE I+ +D V+R N+AP GYE DVG+KTT+
Sbjct: 254 PVPLSRLLPRRLRTCAVVTSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTV 313
Query: 688 RL 693
R+
Sbjct: 314 RI 315
>ref|NP_803483.1| beta-galactoside alpha-2,6-sialyltransferase 1 [Bos taurus].
Length = 405
Score = 53.1 bits (126), Expect = 4e-07
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Frame = +1
Query: 388 QPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCR---RCVV 558
+ + L+D+ + A + P+ T E L P+ R K RC V
Sbjct: 135 EALLCHLRDHVNISMIEASDFPFNTSDWEGYL-----------PQEDIRSKAGPWGRCAV 183
Query: 559 VGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRL 693
V + L++S LG I+ +D V+R N AP ++ DVG+KTT+RL
Sbjct: 184 VSSAGSLKSSRLGREIDDHDAVLRFNGAPTVKFQQDVGTKTTIRL 228
>ref|NP_001069001.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 [Bos
taurus].
Length = 347
Score = 53.1 bits (126), Expect = 4e-07
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Frame = +1
Query: 436 SAYELPYGTKG-SEDLLLRVLAITSYSIPESIQRLK------CRRCVVVGNGHRLRNSLL 594
S ++ PYG +G S + L++ + S + + C RC VVGNG L S
Sbjct: 107 SQHKAPYGWQGLSHQAITSTLSLLNGSESTRLFAVSRELLPGCIRCAVVGNGGILNGSRQ 166
Query: 595 GEAINKYDVVIRLNNAPVAGYEGDVGSK 678
G+ I+ +D V RLN A + G+E DVG+K
Sbjct: 167 GQNIDAHDYVFRLNGAVIKGFENDVGTK 194
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,436,576
Number of extensions: 991725
Number of successful extensions: 3845
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3822
Number of HSP's successfully gapped: 20
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008895
(1097 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848941.1| PREDICTED: similar to ST3 beta-galactoside alph... 423 e-118
Alignment gi|XP_857482.1| PREDICTED: similar to CMP-N-acetylneuraminate-b... 365 e-101
Alignment gi|XP_848351.1| PREDICTED: similar to alpha2,3-sialyltransferas... 138 8e-33
Alignment gi|XP_854842.1| PREDICTED: similar to Lactosylceramide alpha-2,... 122 2e-32
Alignment gi|XP_546834.2| PREDICTED: similar to CMP-N-acetylneuraminate-b... 82 4e-16
Alignment gi|XP_539171.2| PREDICTED: similar to CMP-N-acetylneuraminate-b... 82 9e-16
Alignment gi|XP_855629.1| PREDICTED: similar to CMP-N-acetylneuraminate-b... 82 9e-16
Alignment gi|XP_542976.2| PREDICTED: similar to ST3 beta-galactoside alph... 78 1e-14
Alignment gi|XP_853375.1| PREDICTED: similar to CMP-N-acetylneuraminate-b... 46 9e-09
Alignment gi|XP_544243.2| PREDICTED: similar to Alpha-2,8-sialyltransfera... 57 3e-08
>ref|XP_848941.1| PREDICTED: similar to ST3 beta-galactoside
alpha-2,3-sialyltransferase 4 isoform 1 [Canis
familiaris].
Length = 251
Score = 423 bits (1087), Expect = e-118
Identities = 206/238 (86%), Positives = 214/238 (89%)
Frame = +1
Query: 193 MISKCRWKXXXXXXXXXXXXXWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFG 372
MISK RWK WYSISRED FYFPI EKKEPC QGEAERK SKLFG
Sbjct: 1 MISKSRWKLLAMLALVLVVMVWYSISREDS----FYFPIPEKKEPCFQGEAERKASKLFG 56
Query: 373 NYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRC 552
NYS++QPIFLQ+KDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQ LKCRRC
Sbjct: 57 NYSRDQPIFLQMKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQSLKCRRC 116
Query: 553 VVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVE 732
VVVGNGHRLRNS LG+AINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVE
Sbjct: 117 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVE 176
Query: 733 DNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFME 906
+NPDTLLVLVAFKAMDFHWIE+ILSDKKRVRKGFWKQPPLIWDVNP+Q+RILNPFFME
Sbjct: 177 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPRQVRILNPFFME 234
>ref|XP_857482.1| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha
2,3-sialyltransferase IV) (Alpha 2,3-ST) (Gal-NAc6S)
(STZ) (SIAT4-C) (ST3Gal III) (SAT-3) (ST-4)... isoform 2
[Canis familiaris].
Length = 209
Score = 365 bits (936), Expect = e-101
Identities = 180/217 (82%), Positives = 188/217 (86%)
Frame = +1
Query: 256 WYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTP 435
WYSISREDRYIEL YS++QPIFLQ+KDYFWVKTP
Sbjct: 3 WYSISREDRYIEL---------------------------YSRDQPIFLQMKDYFWVKTP 35
Query: 436 SAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKY 615
SAYELPYGTKGSEDLLLRVLAITSYSIPESIQ LKCRRCVVVGNGHRLRNS LG+AINKY
Sbjct: 36 SAYELPYGTKGSEDLLLRVLAITSYSIPESIQSLKCRRCVVVGNGHRLRNSSLGDAINKY 95
Query: 616 DVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIE 795
DVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVE+NPDTLLVLVAFKAMDFHWIE
Sbjct: 96 DVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVENNPDTLLVLVAFKAMDFHWIE 155
Query: 796 SILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFME 906
+ILSDKKRVRKGFWKQPPLIWDVNP+Q+RILNPFFME
Sbjct: 156 TILSDKKRVRKGFWKQPPLIWDVNPRQVRILNPFFME 192
>ref|XP_848351.1| PREDICTED: similar to alpha2,3-sialyltransferase VI isoform 3
[Canis familiaris].
Length = 331
Score = 138 bits (348), Expect = 8e-33
Identities = 81/213 (38%), Positives = 120/213 (56%), Gaps = 9/213 (4%)
Frame = +1
Query: 292 LFYFPILEKK-----EPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKT---PSAYE 447
+++ P +E K +PCL A + + + Q P FL D+ + + ++
Sbjct: 28 IYWVPPVEMKRRNKIQPCLAKPAFASLLR----FHQFHP-FLCAADFKKIASLYGSDKFD 82
Query: 448 LPYGTKGSEDLLLRVLA-ITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVV 624
LPYG + S + L+ + S + + + C++CVVVGNG L+N LGE I+ YDV+
Sbjct: 83 LPYGIRTSAEYFRLALSKLQSCDLFDEFDNVPCKKCVVVGNGGVLKNKTLGEKIDSYDVI 142
Query: 625 IRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESIL 804
IR+NN PV G+E +VG +TT RLFYPES +P D P+T +L AFK +D W+ +L
Sbjct: 143 IRMNNGPVLGHEEEVGRRTTFRLFYPESVFSDPNHND-PNTTAILTAFKPLDLKWLWEVL 201
Query: 805 SDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFM 903
+ K GFWK+P L P QIRIL+PF +
Sbjct: 202 TGGKINTNGFWKKPALNLIYKPYQIRILDPFII 234
>ref|XP_854842.1| PREDICTED: similar to Lactosylceramide alpha-2,3-sialyltransferase
(CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase)
(Ganglioside GM3 synthase) (ST3Gal V) (Sialyltransferase
9) [Canis familiaris].
Length = 390
Score = 122 bits (307), Expect(2) = 2e-32
Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 11/225 (4%)
Frame = +1
Query: 265 ISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFGN-YSQEQPIFLQLKDYFWVKTPSA 441
+ R +Y + +L+K+ C A++ +++LF + YS + P F++ +TP
Sbjct: 77 VKRAQKYAQ----QVLQKE--CRPKFAKKSMAQLFEHRYSTDLPPFVK-------ETPKM 123
Query: 442 ------YELPYG-TKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGE 600
Y+ P+G K S ++ + + + +PE ++ CRRCVV+G+G L LG+
Sbjct: 124 NEAEYKYDPPFGFRKFSSEVQTLLEILPEHDMPEHLRAKSCRRCVVIGSGGILHGLALGQ 183
Query: 601 AINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMD 780
A+N++DVVIRLN+APV GY VG+KTT+R+ YPE A + +E + L V V FK++D
Sbjct: 184 ALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLS-DLEYYSNDLFVAVLFKSVD 242
Query: 781 FHWIESILSDKKR---VRKGFWKQPPLIWDVNPKQIRILNPFFME 906
F+W+++++ ++ VR FWKQ + PK RILNP ++
Sbjct: 243 FNWLQAMVKNETLPFWVRLFFWKQVAEKIPLQPKHFRILNPVIIK 287
Score = 35.8 bits (81), Expect(2) = 2e-32
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G++A+ L LCD +AGFGY D + K +HY++ +
Sbjct: 314 GVIAVVLATHLCDEVSLAGFGY-DLNQPKTPLHYFDNL 350
>ref|XP_546834.2| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalA.2) (SIAT4-B) (ST3Gal II)... [Canis familiaris].
Length = 350
Score = 81.6 bits (200), Expect(2) = 4e-16
Identities = 48/123 (39%), Positives = 70/123 (56%)
Frame = +1
Query: 538 KCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHF 717
+CRRC VVGN LR S G ++ ++ ++R+N AP G+E DVGS+TT YPESA
Sbjct: 148 QCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAPTVGFEQDVGSRTTHHFMYPESAKN 207
Query: 718 NPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPF 897
P + VLV FKA+D WI S LS ++R + + V+ ++++I NP
Sbjct: 208 LP-----ANVSFVLVPFKALDLLWIASALS-TGQIRFTYAPVKSFL-RVDKEKVQIYNPA 260
Query: 898 FME 906
F +
Sbjct: 261 FFK 263
Score = 21.9 bits (45), Expect(2) = 4e-16
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYE 1084
G+L + +CD ++ GFG A + HY+E
Sbjct: 280 GMLVLFFALHVCDEVNVYGFG---ADSRGNWHHYWE 312
>ref|XP_539171.2| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... iso [Canis
familiaris].
Length = 342
Score = 82.0 bits (201), Expect = 9e-16
Identities = 44/86 (51%), Positives = 52/86 (60%)
Frame = +1
Query: 541 CRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFN 720
CRRC VVGN LR S G I+ +D V+R+N AP AG+E DVGSKTT L YPES F
Sbjct: 141 CRRCAVVGNSGNLRESWYGPQIDSHDFVLRMNKAPTAGFEMDVGSKTTHHLVYPES--FR 198
Query: 721 PKVEDNPDTLLVLVAFKAMDFHWIES 798
E + +VLV FK D W+ S
Sbjct: 199 ELAE---NVSMVLVPFKTTDLEWVVS 221
>ref|XP_855629.1| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... iso [Canis
familiaris].
Length = 227
Score = 82.0 bits (201), Expect = 9e-16
Identities = 44/86 (51%), Positives = 52/86 (60%)
Frame = +1
Query: 541 CRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFN 720
CRRC VVGN LR S G I+ +D V+R+N AP AG+E DVGSKTT L YPES F
Sbjct: 138 CRRCAVVGNSGNLRESWYGPQIDSHDFVLRMNKAPTAGFEMDVGSKTTHHLVYPES--FR 195
Query: 721 PKVEDNPDTLLVLVAFKAMDFHWIES 798
E + +VLV FK D W+ S
Sbjct: 196 ELAE---NVSMVLVPFKTTDLEWVVS 218
>ref|XP_542976.2| PREDICTED: similar to ST3 beta-galactoside
alpha-2,3-sialyltransferase 2 isoform 2 [Canis
familiaris].
Length = 236
Score = 78.2 bits (191), Expect = 1e-14
Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Frame = +1
Query: 541 CRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFN 720
CR C VVGN LR S G IN+ D+V+R+N APV G+E DVG+ TTMR+ YP+ A
Sbjct: 35 CRTCAVVGNSRCLRGSGHGFRINQNDMVLRMNQAPVQGFEMDVGNTTTMRIMYPDMAS-- 92
Query: 721 PKVEDNPDTLLVLVAFKAMDFHWIESILSD---KKRVRKGF 834
NP T L+L+ + W +L + +K + GF
Sbjct: 93 ---TQNPGTKLLLLPLNSSGLKWFMEVLQEQSFRKPINPGF 130
>ref|XP_853375.1| PREDICTED: similar to CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase (N-acetyllactosaminide
alpha-2,3-sialyltransferase) (Gal beta-1,3(4) GlcNAc
alpha-2,3 sialyltransferase) (ST3N) (ST3GalIII)
(Sialyltransferase 6) [Canis familiaris].
Length = 162
Score = 46.2 bits (108), Expect(2) = 9e-09
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 742 DTLLVLVAFKAMDFHWIESIL-SDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMENCS 915
D+L VL FK DF W++ I+ ++ GFWK P +IRILNP+F++ +
Sbjct: 10 DSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVPKEPPEIRILNPYFIQEAA 68
Score = 32.3 bits (72), Expect(2) = 9e-09
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G +A+T+ CD +AGFGY D +HYYE +
Sbjct: 90 GSVAVTMALHGCDEVAVAGFGY-DMSTPNAPLHYYETV 126
>ref|XP_544243.2| PREDICTED: similar to Alpha-2,8-sialyltransferase 8F (ST8Sia VI)
[Canis familiaris].
Length = 331
Score = 57.0 bits (136), Expect = 3e-08
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 4/148 (2%)
Frame = +1
Query: 256 WYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVK-- 429
W + RY+E Y I+ + C E + + N+ + F V
Sbjct: 22 WKGLQSALRYLESDYLQIIRNIQNCPWKRQEEE----YENFRAKLASCCDAAQNFIVSQN 77
Query: 430 -TPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAI 606
TP+ + Y + ++L+R + + + +C VVGNG L SL G I
Sbjct: 78 NTPAGTNMSYEVESKNEILIRENIFNMFPVSQPFVEYPYNQCAVVGNGGILNKSLCGAEI 137
Query: 607 NKYDVVIRLNNAPVAG-YEGDVGSKTTM 687
+K D V R N P+ G DVGSKT +
Sbjct: 138 DKSDFVFRCNLPPITGNISKDVGSKTNV 165
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,217,510
Number of extensions: 1026909
Number of successful extensions: 4081
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 4067
Number of HSP's successfully gapped: 24
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008895
(1097 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998922.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 461 e-130
Alignment gi|NP_998924.1| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 147 4e-39
Alignment gi|XP_003354781.1| PREDICTED: hypothetical protein LOC100625751... 111 6e-25
Alignment gi|NP_001004047.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 80 5e-16
Alignment gi|XP_003361349.1| PREDICTED: CMP-N-acetylneuraminate-beta-gala... 82 7e-16
Alignment gi|XP_003358003.1| PREDICTED: alpha-N-acetylgalactosaminide alp... 57 1e-08
Alignment gi|XP_003358002.1| PREDICTED: alpha-N-acetylgalactosaminide alp... 57 1e-08
Alignment gi|XP_003124903.1| PREDICTED: beta-galactoside alpha-2,6-sialyl... 57 2e-08
Alignment gi|XP_003131225.2| PREDICTED: alpha-N-acetylgalactosaminide alp... 54 2e-07
Alignment gi|XP_003122237.2| PREDICTED: alpha-N-acetylgalactosaminide alp... 52 4e-07
>ref|NP_998922.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 4 [Sus scrofa].
Length = 333
Score = 461 bits (1186), Expect = e-130
Identities = 224/238 (94%), Positives = 225/238 (94%)
Frame = +1
Query: 193 MISKCRWKXXXXXXXXXXXXXWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFG 372
MISKCRWK WYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFG
Sbjct: 1 MISKCRWKLLAMLAFVLVVMVWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFG 60
Query: 373 NYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRC 552
NYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRC
Sbjct: 61 NYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRC 120
Query: 553 VVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVE 732
VVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVE
Sbjct: 121 VVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVE 180
Query: 733 DNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFME 906
DNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPF+ME
Sbjct: 181 DNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFYME 238
Score = 85.1 bits (209), Expect = 6e-17
Identities = 44/76 (57%), Positives = 47/76 (61%)
Frame = +2
Query: 869 PNRFEFSTPSSWRIAADKLLRLPMXXXXXXXXXXXXGLLAITLXXSLCDLXHIAGFGYPD 1048
P + P IAADKLL LP+ GLLAITL LCDL HIAGFGYPD
Sbjct: 226 PKQIRILNPFYMEIAADKLLSLPIHQPHKIKQKPTTGLLAITLALHLCDLVHIAGFGYPD 285
Query: 1049 AXKQKESIHYYEQITI 1096
A +KESIHYYEQITI
Sbjct: 286 AQNKKESIHYYEQITI 301
>ref|NP_998924.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase [Sus scrofa].
Length = 374
Score = 147 bits (372), Expect(2) = 4e-39
Identities = 77/198 (38%), Positives = 117/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 328 CLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITS 507
C G A ++ +F +S+ P+FL W + + P+G KG ++L+ +L++T
Sbjct: 85 CKPGYASAVMTAIFPRFSKPAPMFLDDSFRKWARIRE-FVPPFGIKGQDNLIKAILSVTK 143
Query: 508 -YSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
Y + ++ L CRRC++VGNG L N LG I+ YD+V+RLN+APV G+E DVGSKTT
Sbjct: 144 EYRLTPALDSLSCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPVKGFEKDVGSKTT 203
Query: 685 MRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESIL-SDKKRVRKGFWKQPPLIWD 861
+R+ YPE A P+ + D+L VL FK DF W++ I+ ++ GFWK
Sbjct: 204 LRITYPEGAMQRPEQYER-DSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVP 262
Query: 862 VNPKQIRILNPFFMENCS 915
P +IRILNP+F++ +
Sbjct: 263 KEPPEIRILNPYFIQEAA 280
Score = 32.3 bits (72), Expect(2) = 4e-39
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G +A+T+ CD +AGFGY D +HYYE +
Sbjct: 302 GSVAVTMALHGCDEVAVAGFGY-DMSTPNAPLHYYETV 338
>ref|XP_003354781.1| PREDICTED: hypothetical protein LOC100625751, partial [Sus scrofa].
Length = 498
Score = 111 bits (278), Expect = 6e-25
Identities = 69/186 (37%), Positives = 109/186 (58%), Gaps = 2/186 (1%)
Frame = +1
Query: 262 SISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFG-NYSQEQPIFLQLKDYFWVKTPS 438
S R +Y + +L+K+ C A+R +++LFG YS + P F+ K K S
Sbjct: 216 SFQRAQKYAQ----QVLQKE--CRPHFAKRSMAQLFGPRYSTDLPPFVT-KAPLGSKAES 268
Query: 439 AYELPYG-TKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKY 615
Y+ P+G K S + + + + PE + CRRCVV+G+G L LG A+N++
Sbjct: 269 KYDPPFGFRKFSSKVQALLELLPEHDFPEHLTAKSCRRCVVIGSGGILHGLELGPALNQF 328
Query: 616 DVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIE 795
DVVIRLN+APV GY VG+KTT+R+ YPE A + +E + L V V FK++DF+W++
Sbjct: 329 DVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLS-DLEYYSNDLFVAVLFKSVDFNWLQ 387
Query: 796 SILSDK 813
+++ ++
Sbjct: 388 AMVKNE 393
>ref|NP_001004047.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Sus scrofa].
Length = 343
Score = 80.1 bits (196), Expect(2) = 5e-16
Identities = 47/124 (37%), Positives = 66/124 (53%)
Frame = +1
Query: 535 LKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAH 714
+ CRRC VVGN L+ S G I+ +D V+R+N AP G+E DVGSKTT YPES
Sbjct: 140 VSCRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGFEADVGSKTTHHFVYPESFR 199
Query: 715 FNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNP 894
E + ++LV FK D W+ S + R+ + P I V ++I I +P
Sbjct: 200 -----ELAQEVSMILVPFKTTDLEWVIS-ATTTGRISHTYVPVPAKI-KVKKEKILIYHP 252
Query: 895 FFME 906
F++
Sbjct: 253 AFIK 256
Score = 22.3 bits (46), Expect(2) = 5e-16
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYE 1084
G+L++ +CD + GFG A + HY+E
Sbjct: 273 GILSVIFSLHICDEVDLYGFG---ADSKGNWHHYWE 305
>ref|XP_003361349.1| PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Sus scrofa].
Length = 335
Score = 81.6 bits (200), Expect = 7e-16
Identities = 48/123 (39%), Positives = 70/123 (56%)
Frame = +1
Query: 538 KCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHF 717
+CRRC VVGN LR S G ++ ++ ++R+N AP G+E DVGS+TT YPESA
Sbjct: 148 QCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAPTVGFEQDVGSRTTHHFMYPESAKN 207
Query: 718 NPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPF 897
P + VLV FKA+D WI S LS ++R + + V+ ++++I NP
Sbjct: 208 LP-----ANVSFVLVPFKALDLLWIASALS-TGQIRFTYAPVKSFL-RVDKEKVQIYNPA 260
Query: 898 FME 906
F +
Sbjct: 261 FFK 263
>ref|XP_003358003.1| PREDICTED: alpha-N-acetylgalactosaminide
alpha-2,6-sialyltransferase 1-like [Sus scrofa].
Length = 567
Score = 57.4 bits (137), Expect = 1e-08
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Frame = +1
Query: 538 KCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKT----------TM 687
+C RC VVGNG L NS +G I+ +D V RL+ A + GYE DVG++T T
Sbjct: 330 QCIRCAVVGNGGILNNSHMGREIDGHDYVFRLSGAVIKGYEQDVGTRTSFYGFTAFSLTQ 389
Query: 688 RLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKG-FW 837
L S F D + D+ W+E++L ++ V+K FW
Sbjct: 390 SLLILGSRGFQ-HAPLGKDVRYLHFLEGTRDYEWLEALLLNQTLVKKSLFW 439
>ref|XP_003358002.1| PREDICTED: alpha-N-acetylgalactosaminide
alpha-2,6-sialyltransferase 1-like [Sus scrofa].
Length = 567
Score = 57.4 bits (137), Expect = 1e-08
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Frame = +1
Query: 538 KCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKT----------TM 687
+C RC VVGNG L NS +G I+ +D V RL+ A + GYE DVG++T T
Sbjct: 330 QCIRCAVVGNGGILNNSHMGREIDGHDYVFRLSGAVIKGYEQDVGTRTSFYGFTAFSLTQ 389
Query: 688 RLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKG-FW 837
L S F D + D+ W+E++L ++ V+K FW
Sbjct: 390 SLLILGSRGFQ-HAPLGKDVRYLHFLEGTRDYEWLEALLLNQTLVKKSLFW 439
>ref|XP_003124903.1| PREDICTED: beta-galactoside alpha-2,6-sialyltransferase 2-like [Sus
scrofa].
Length = 503
Score = 57.0 bits (136), Expect = 2e-08
Identities = 29/67 (43%), Positives = 41/67 (61%)
Frame = +1
Query: 544 RRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNP 723
R C VV + + NS LGE I+ +D V+R N+AP GYE DVG+KTT+R+ N
Sbjct: 274 RSCAVVTSAGAILNSSLGEEIDSHDAVLRFNSAPTHGYEKDVGNKTTIRI-------INS 326
Query: 724 KVEDNPD 744
++ NP+
Sbjct: 327 QILTNPN 333
>ref|XP_003131225.2| PREDICTED: alpha-N-acetylgalactosaminide
alpha-2,6-sialyltransferase 2-like [Sus scrofa].
Length = 374
Score = 53.9 bits (128), Expect = 2e-07
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Frame = +1
Query: 442 YELPYGTKG-SEDLLLRVLAITSYS-----IPESIQRL-KCRRCVVVGNGHRLRNSLLGE 600
++ PYG +G S + L + + S S QRL +C RC VVGNG L S G+
Sbjct: 108 HKAPYGWQGLSRQAIASTLGLLNGSESSRLFAVSRQRLPRCIRCAVVGNGGILNGSRQGQ 167
Query: 601 AINKYDVVIRLNNAPVAGYEGDVGSK 678
I+ +D V RLN A G+E DVG+K
Sbjct: 168 NIDAHDYVFRLNGAVTRGFEDDVGTK 193
>ref|XP_003122237.2| PREDICTED: alpha-N-acetylgalactosaminide
alpha-2,6-sialyltransferase 6-like [Sus scrofa].
Length = 299
Score = 52.4 bits (124), Expect = 4e-07
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +1
Query: 538 KCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRL 693
+C +CV+V + L + LG I + + IR+N+AP GY DVG+KTT R+
Sbjct: 70 RCHQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGNKTTFRV 121
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,845,018
Number of extensions: 639475
Number of successful extensions: 2535
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2529
Number of HSP's successfully gapped: 18
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008895
(1097 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033204.2| CMP-N-acetylneuraminate-beta-galactosamide-alph... 418 e-117
Alignment gi|NP_001155246.1| CMP-N-acetylneuraminate-beta-1,4-galactoside... 148 4e-39
Alignment gi|NP_033202.3| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 148 4e-39
Alignment gi|NP_061254.1| type 2 lactosamine alpha-2,3-sialyltransferase ... 134 4e-35
Alignment gi|NP_001030305.1| lactosylceramide alpha-2,3-sialyltransferase... 117 2e-30
Alignment gi|NP_035505.2| lactosylceramide alpha-2,3-sialyltransferase is... 117 2e-30
Alignment gi|NP_033205.2| CMP-N-acetylneuraminate-beta-galactosamide-alph... 84 5e-17
Alignment gi|NP_033203.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 82 2e-16
Alignment gi|NP_033206.2| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 57 2e-08
Alignment gi|NP_766417.1| beta-galactoside alpha-2,6-sialyltransferase 2 ... 55 1e-07
>ref|NP_033204.2| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 4 [Mus musculus].
Length = 333
Score = 418 bits (1074), Expect = e-117
Identities = 200/238 (84%), Positives = 212/238 (89%)
Frame = +1
Query: 193 MISKCRWKXXXXXXXXXXXXXWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFG 372
M SK WK WYSISREDRYIE FYFPI EKKEPC QGEAER+ SK+FG
Sbjct: 1 MTSKSHWKLLALALVLVVVMVWYSISREDRYIEFFYFPISEKKEPCFQGEAERQASKIFG 60
Query: 373 NYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRC 552
N S+EQPIFLQLKDYFWVKTPS YELP+GTKGSEDLLLRVLAITSYSIPESI+ L+CRRC
Sbjct: 61 NRSREQPIFLQLKDYFWVKTPSTYELPFGTKGSEDLLLRVLAITSYSIPESIKSLECRRC 120
Query: 553 VVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVE 732
VVVGNGHRLRNS LG INKYDVVIRLNNAPVAGYEGDVGSKTT+RLFYPESAHF+PK+E
Sbjct: 121 VVVGNGHRLRNSSLGGVINKYDVVIRLNNAPVAGYEGDVGSKTTIRLFYPESAHFDPKIE 180
Query: 733 DNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFME 906
+NPDTLLVLVAFKAMDFHWIE+ILSDKKRVRKGFWKQPPLIWDVNPKQ+RILNPFFME
Sbjct: 181 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQVRILNPFFME 238
Score = 82.0 bits (201), Expect = 7e-16
Identities = 48/107 (44%), Positives = 55/107 (51%)
Frame = +2
Query: 776 WTSTGLRAS*VTRSGFERVSGNSLPSSGTSTPNRFEFSTPSSWRIAADKLLRLPMXXXXX 955
W T L R GF + P P + P IAADKLL LP+
Sbjct: 199 WIETILSDKKRVRKGFWKQP----PLIWDVNPKQVRILNPFFMEIAADKLLSLPIQQPRK 254
Query: 956 XXXXXXXGLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQITI 1096
GLLAITL LCDL HIAGFGYPDA +K++IHYYEQIT+
Sbjct: 255 IKQKPTTGLLAITLALHLCDLVHIAGFGYPDASNKKQTIHYYEQITL 301
>ref|NP_001155246.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase [Mus musculus].
Length = 374
Score = 148 bits (373), Expect(2) = 4e-39
Identities = 78/198 (39%), Positives = 117/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 328 CLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITS 507
C G A ++ +F +S+ P+FL W + + P+G KG ++L+ +L++T
Sbjct: 85 CKPGYASAMMTAIFPRFSKPAPMFLDDSFRKWARIRE-FVPPFGIKGQDNLIKAILSVTK 143
Query: 508 -YSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
Y + ++ L CRRC++VGNG L N LG I+ YD+VIRLN+APV G+E DVGSKTT
Sbjct: 144 EYRLTPALDSLHCRRCIIVGNGGVLANKSLGSRIDDYDIVIRLNSAPVKGFERDVGSKTT 203
Query: 685 MRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESIL-SDKKRVRKGFWKQPPLIWD 861
+R+ YPE A P+ + D+L VL FK DF W++ I+ ++ GFWK
Sbjct: 204 LRITYPEGAMQRPEQYER-DSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVP 262
Query: 862 VNPKQIRILNPFFMENCS 915
P +IRILNP+F++ +
Sbjct: 263 KEPPEIRILNPYFIQEAA 280
Score = 32.3 bits (72), Expect(2) = 4e-39
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G +A+T+ CD +AGFGY D +HYYE +
Sbjct: 302 GSVAVTMALHGCDEVAVAGFGY-DMNTPNAPLHYYETV 338
>ref|NP_033202.3| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase [Mus musculus].
Length = 374
Score = 148 bits (373), Expect(2) = 4e-39
Identities = 78/198 (39%), Positives = 117/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 328 CLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITS 507
C G A ++ +F +S+ P+FL W + + P+G KG ++L+ +L++T
Sbjct: 85 CKPGYASAMMTAIFPRFSKPAPMFLDDSFRKWARIRE-FVPPFGIKGQDNLIKAILSVTK 143
Query: 508 -YSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
Y + ++ L CRRC++VGNG L N LG I+ YD+VIRLN+APV G+E DVGSKTT
Sbjct: 144 EYRLTPALDSLHCRRCIIVGNGGVLANKSLGSRIDDYDIVIRLNSAPVKGFERDVGSKTT 203
Query: 685 MRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESIL-SDKKRVRKGFWKQPPLIWD 861
+R+ YPE A P+ + D+L VL FK DF W++ I+ ++ GFWK
Sbjct: 204 LRITYPEGAMQRPEQYER-DSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVP 262
Query: 862 VNPKQIRILNPFFMENCS 915
P +IRILNP+F++ +
Sbjct: 263 KEPPEIRILNPYFIQEAA 280
Score = 32.3 bits (72), Expect(2) = 4e-39
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G +A+T+ CD +AGFGY D +HYYE +
Sbjct: 302 GSVAVTMALHGCDEVAVAGFGY-DMNTPNAPLHYYETV 338
>ref|NP_061254.1| type 2 lactosamine alpha-2,3-sialyltransferase [Mus musculus].
Length = 329
Score = 134 bits (338), Expect(2) = 4e-35
Identities = 77/179 (43%), Positives = 101/179 (56%), Gaps = 4/179 (2%)
Frame = +1
Query: 397 FLQLKDYFWVKTPSA---YELPYGTKGSEDLLLRVLA-ITSYSIPESIQRLKCRRCVVVG 564
FL D+ V S + LPYG K E L+ + S + + R+ C+RCVVVG
Sbjct: 63 FLCRADFIKVAAMSGTNNFPLPYGIKTFETYFSSALSKLQSCDLFDEFDRVPCKRCVVVG 122
Query: 565 NGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPD 744
NG L+N LG I+ YDV+IR+NN PV G+E +VG++TT RLFYPES F+ +P+
Sbjct: 123 NGGVLKNKTLGATIDSYDVIIRMNNGPVLGHEEEVGTRTTFRLFYPESV-FSDSSHYDPN 181
Query: 745 TLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMENCS*Q 921
T VLV FK D W+ IL KK +GFWK P L QIRIL+P+ + Q
Sbjct: 182 TTAVLVVFKPQDLRWLVEILLGKKINTQGFWKTPALKLIYKQYQIRILDPYITSEAAFQ 240
Score = 32.3 bits (72), Expect(2) = 4e-35
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 911 AADKLLRLP-MXXXXXXXXXXXXGLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQ 1087
AA ++LR P + G++AIT+ +C H+AGF Y + +HYY
Sbjct: 237 AAFQMLRFPRVFPKDQKPKHPTTGIIAITMAFHICSEVHLAGFKY-NFYSPNSPLHYYGN 295
Query: 1088 ITI 1096
T+
Sbjct: 296 ATM 298
>ref|NP_001030305.1| lactosylceramide alpha-2,3-sialyltransferase isoform a [Mus
musculus].
Length = 414
Score = 117 bits (293), Expect(2) = 2e-30
Identities = 69/173 (39%), Positives = 101/173 (58%), Gaps = 10/173 (5%)
Frame = +1
Query: 418 FWVKTPSA------YELPYGTKGSEDLLLRVL-AITSYSIPESIQRLKCRRCVVVGNGHR 576
F K P+A Y+ P+G + + +L + + PE ++ C+RCVVVGNG
Sbjct: 143 FVQKVPTASEAELKYDPPFGFRKFSSKVQSLLDMLPEHDFPEHLRAKACKRCVVVGNGGI 202
Query: 577 LRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLV 756
L LG A+N++DVVIRLN+APV GY VG+KTT+R+ YPE A + VE + L V
Sbjct: 203 LHGLELGHALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLS-DVEYYANDLFV 261
Query: 757 LVAFKAMDFHWIESILSDKKR---VRKGFWKQPPLIWDVNPKQIRILNPFFME 906
V FK++DF W+++++ ++ VR FWKQ + PK RILNP ++
Sbjct: 262 TVLFKSVDFKWLQAMVKNESLPFWVRLFFWKQVAEKVPLQPKHFRILNPVIIK 314
Score = 33.9 bits (76), Expect(2) = 2e-30
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYE 1084
G++A+ L LCD +AGFGY D + + +HY++
Sbjct: 341 GVIAVVLATHLCDEVSLAGFGY-DLSQPRTPLHYFD 375
>ref|NP_035505.2| lactosylceramide alpha-2,3-sialyltransferase isoform b [Mus
musculus].
Length = 387
Score = 117 bits (293), Expect(2) = 2e-30
Identities = 69/173 (39%), Positives = 101/173 (58%), Gaps = 10/173 (5%)
Frame = +1
Query: 418 FWVKTPSA------YELPYGTKGSEDLLLRVL-AITSYSIPESIQRLKCRRCVVVGNGHR 576
F K P+A Y+ P+G + + +L + + PE ++ C+RCVVVGNG
Sbjct: 116 FVQKVPTASEAELKYDPPFGFRKFSSKVQSLLDMLPEHDFPEHLRAKACKRCVVVGNGGI 175
Query: 577 LRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLV 756
L LG A+N++DVVIRLN+APV GY VG+KTT+R+ YPE A + VE + L V
Sbjct: 176 LHGLELGHALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLS-DVEYYANDLFV 234
Query: 757 LVAFKAMDFHWIESILSDKKR---VRKGFWKQPPLIWDVNPKQIRILNPFFME 906
V FK++DF W+++++ ++ VR FWKQ + PK RILNP ++
Sbjct: 235 TVLFKSVDFKWLQAMVKNESLPFWVRLFFWKQVAEKVPLQPKHFRILNPVIIK 287
Score = 33.9 bits (76), Expect(2) = 2e-30
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYE 1084
G++A+ L LCD +AGFGY D + + +HY++
Sbjct: 314 GVIAVVLATHLCDEVSLAGFGY-DLSQPRTPLHYFD 348
>ref|NP_033205.2| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Mus musculus].
Length = 350
Score = 84.3 bits (207), Expect(2) = 5e-17
Identities = 48/123 (39%), Positives = 71/123 (57%)
Frame = +1
Query: 538 KCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHF 717
+CRRC VVGN LR S G+ ++ ++ ++R+N AP G+E DVGS+TT YPESA
Sbjct: 148 QCRRCAVVGNSGNLRGSGYGQEVDSHNFIMRMNQAPTVGFEKDVGSRTTHHFMYPESAKN 207
Query: 718 NPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPF 897
P + VLV FKA+D WI S LS ++R + + V+ ++++I NP
Sbjct: 208 LP-----ANVSFVLVPFKALDLMWIASALS-TGQIRFTYAPVKSFL-RVDKEKVQIYNPA 260
Query: 898 FME 906
F +
Sbjct: 261 FFK 263
Score = 21.9 bits (45), Expect(2) = 5e-17
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYE 1084
G+L + +CD ++ GFG A + HY+E
Sbjct: 280 GMLVLFFALHVCDEVNVYGFG---ADSRGNWHHYWE 312
>ref|NP_033203.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Mus musculus].
Length = 337
Score = 81.6 bits (200), Expect(2) = 2e-16
Identities = 48/122 (39%), Positives = 67/122 (54%)
Frame = +1
Query: 541 CRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFN 720
CRRC VVGN L++S G I+ +D V+R+N AP G+E DVGS+TT L YPES
Sbjct: 136 CRRCAVVGNSGNLKDSSYGPEIDSHDFVLRMNKAPTVGFEADVGSRTTHHLVYPESFR-- 193
Query: 721 PKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFF 900
E + +VLV FK D W+ S + + + PP I V ++I I +P F
Sbjct: 194 ---ELGENVNMVLVPFKTTDLQWVIS-ATTTGTITHTYVPVPPKI-KVKQEKILIYHPAF 248
Query: 901 ME 906
++
Sbjct: 249 IK 250
Score = 22.7 bits (47), Expect(2) = 2e-16
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYE 1084
G+L+I +CD + GFG A + HY+E
Sbjct: 267 GILSIIFSIHICDEVDLYGFG---ADSKGNWHHYWE 299
>ref|NP_033206.2| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 [Mus
musculus].
Length = 373
Score = 57.4 bits (137), Expect = 2e-08
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Frame = +1
Query: 436 SAYELPYGTKG-SEDLLLRVLAITS-------YSIPESIQRLKCRRCVVVGNGHRLRNSL 591
S +++PYG +G S +++ L + + P + L C RC VVGNG L S
Sbjct: 105 SQHKVPYGWQGLSHEVIASTLRLLKSPESGELFGAPRKLP-LSCIRCAVVGNGGILNGSR 163
Query: 592 LGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
G+ I+ +D V RLN A G+E DVG+KT+
Sbjct: 164 QGQKIDAHDYVFRLNGAITEGFERDVGTKTS 194
>ref|NP_766417.1| beta-galactoside alpha-2,6-sialyltransferase 2 [Mus musculus].
Length = 438
Score = 55.1 bits (131), Expect = 1e-07
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1
Query: 550 CVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRL 693
C VV + + NS LGE I+ +D V+R N+AP GYE DVG+KTT+R+
Sbjct: 291 CAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTVRI 338
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,242,175
Number of extensions: 831444
Number of successful extensions: 3054
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 3029
Number of HSP's successfully gapped: 29
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008895
(1097 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006269.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 412 e-115
Alignment gi|NP_777623.2| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 148 4e-39
Alignment gi|NP_777628.2| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 148 4e-39
Alignment gi|NP_777631.2| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 148 4e-39
Alignment gi|NP_777624.1| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 148 4e-39
Alignment gi|NP_006270.1| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 148 4e-39
Alignment gi|NP_777629.1| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 148 4e-39
Alignment gi|NP_006091.1| type 2 lactosamine alpha-2,3-sialyltransferase ... 138 8e-33
Alignment gi|NP_777626.1| CMP-N-acetylneuraminate-beta-1,4-galactoside al... 128 8e-30
Alignment gi|NP_003887.3| lactosylceramide alpha-2,3-sialyltransferase is... 115 1e-29
>ref|NP_006269.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 4 [Homo sapiens].
Length = 329
Score = 412 bits (1058), Expect = e-115
Identities = 201/238 (84%), Positives = 213/238 (89%)
Frame = +1
Query: 193 MISKCRWKXXXXXXXXXXXXXWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFG 372
M+SK RWK WYSISRED FYFPI EKKEPCLQGEAE K SKLFG
Sbjct: 1 MVSKSRWKLLAMLALVLVVMVWYSISREDS----FYFPIPEKKEPCLQGEAESKASKLFG 56
Query: 373 NYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRC 552
NYS++QPIFL+L+DYFWVKTPSAYELPYGTKGSEDLLLRVLAITS SIP++IQ L+CRRC
Sbjct: 57 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC 116
Query: 553 VVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVE 732
VVVGNGHRLRNS LG+AINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHF+PKVE
Sbjct: 117 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE 176
Query: 733 DNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFME 906
+NPDTLLVLVAFKAMDFHWIE+ILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFME
Sbjct: 177 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFME 234
Score = 84.0 bits (206), Expect = 2e-16
Identities = 49/107 (45%), Positives = 55/107 (51%)
Frame = +2
Query: 776 WTSTGLRAS*VTRSGFERVSGNSLPSSGTSTPNRFEFSTPSSWRIAADKLLRLPMXXXXX 955
W T L R GF + P P + P IAADKLL LPM
Sbjct: 195 WIETILSDKKRVRKGFWKQP----PLIWDVNPKQIRILNPFFMEIAADKLLSLPMQQPRK 250
Query: 956 XXXXXXXGLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQITI 1096
GLLAITL LCDL HIAGFGYPDA +K++IHYYEQIT+
Sbjct: 251 IKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQITL 297
>ref|NP_777623.2| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform a [Homo sapiens].
Length = 444
Score = 148 bits (374), Expect(2) = 4e-39
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 328 CLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITS 507
C G A ++ +F +S+ P+FL W + + P+G KG ++L+ +L++T
Sbjct: 155 CKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIRE-FVPPFGIKGQDNLIKAILSVTK 213
Query: 508 -YSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
Y + ++ L+CRRC++VGNG L N LG I+ YD+V+RLN+APV G+E DVGSKTT
Sbjct: 214 EYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPVKGFEKDVGSKTT 273
Query: 685 MRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESIL-SDKKRVRKGFWKQPPLIWD 861
+R+ YPE A P+ + D+L VL FK DF W++ I+ ++ GFWK
Sbjct: 274 LRITYPEGAMQRPEQYER-DSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVP 332
Query: 862 VNPKQIRILNPFFMENCS 915
P +IRILNP+F++ +
Sbjct: 333 KEPPEIRILNPYFIQEAA 350
Score = 32.3 bits (72), Expect(2) = 4e-39
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G +A+T+ CD +AGFGY D +HYYE +
Sbjct: 372 GSVAVTMALHGCDEVAVAGFGY-DMSTPNAPLHYYETV 408
>ref|NP_777628.2| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform f [Homo sapiens].
Length = 429
Score = 148 bits (374), Expect(2) = 4e-39
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 328 CLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITS 507
C G A ++ +F +S+ P+FL W + + P+G KG ++L+ +L++T
Sbjct: 140 CKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIRE-FVPPFGIKGQDNLIKAILSVTK 198
Query: 508 -YSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
Y + ++ L+CRRC++VGNG L N LG I+ YD+V+RLN+APV G+E DVGSKTT
Sbjct: 199 EYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPVKGFEKDVGSKTT 258
Query: 685 MRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESIL-SDKKRVRKGFWKQPPLIWD 861
+R+ YPE A P+ + D+L VL FK DF W++ I+ ++ GFWK
Sbjct: 259 LRITYPEGAMQRPEQYER-DSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVP 317
Query: 862 VNPKQIRILNPFFMENCS 915
P +IRILNP+F++ +
Sbjct: 318 KEPPEIRILNPYFIQEAA 335
Score = 32.3 bits (72), Expect(2) = 4e-39
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G +A+T+ CD +AGFGY D +HYYE +
Sbjct: 357 GSVAVTMALHGCDEVAVAGFGY-DMSTPNAPLHYYETV 393
>ref|NP_777631.2| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform i [Homo sapiens].
Length = 413
Score = 148 bits (374), Expect(2) = 4e-39
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 328 CLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITS 507
C G A ++ +F +S+ P+FL W + + P+G KG ++L+ +L++T
Sbjct: 124 CKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIRE-FVPPFGIKGQDNLIKAILSVTK 182
Query: 508 -YSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
Y + ++ L+CRRC++VGNG L N LG I+ YD+V+RLN+APV G+E DVGSKTT
Sbjct: 183 EYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPVKGFEKDVGSKTT 242
Query: 685 MRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESIL-SDKKRVRKGFWKQPPLIWD 861
+R+ YPE A P+ + D+L VL FK DF W++ I+ ++ GFWK
Sbjct: 243 LRITYPEGAMQRPEQYER-DSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVP 301
Query: 862 VNPKQIRILNPFFMENCS 915
P +IRILNP+F++ +
Sbjct: 302 KEPPEIRILNPYFIQEAA 319
Score = 32.3 bits (72), Expect(2) = 4e-39
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G +A+T+ CD +AGFGY D +HYYE +
Sbjct: 341 GSVAVTMALHGCDEVAVAGFGY-DMSTPNAPLHYYETV 377
>ref|NP_777624.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform b [Homo sapiens].
Length = 390
Score = 148 bits (374), Expect(2) = 4e-39
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 328 CLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITS 507
C G A ++ +F +S+ P+FL W + + P+G KG ++L+ +L++T
Sbjct: 101 CKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIRE-FVPPFGIKGQDNLIKAILSVTK 159
Query: 508 -YSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
Y + ++ L+CRRC++VGNG L N LG I+ YD+V+RLN+APV G+E DVGSKTT
Sbjct: 160 EYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPVKGFEKDVGSKTT 219
Query: 685 MRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESIL-SDKKRVRKGFWKQPPLIWD 861
+R+ YPE A P+ + D+L VL FK DF W++ I+ ++ GFWK
Sbjct: 220 LRITYPEGAMQRPEQYER-DSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVP 278
Query: 862 VNPKQIRILNPFFMENCS 915
P +IRILNP+F++ +
Sbjct: 279 KEPPEIRILNPYFIQEAA 296
Score = 32.3 bits (72), Expect(2) = 4e-39
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G +A+T+ CD +AGFGY D +HYYE +
Sbjct: 318 GSVAVTMALHGCDEVAVAGFGY-DMSTPNAPLHYYETV 354
>ref|NP_006270.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform j [Homo sapiens].
Length = 375
Score = 148 bits (374), Expect(2) = 4e-39
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 328 CLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITS 507
C G A ++ +F +S+ P+FL W + + P+G KG ++L+ +L++T
Sbjct: 86 CKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIRE-FVPPFGIKGQDNLIKAILSVTK 144
Query: 508 -YSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
Y + ++ L+CRRC++VGNG L N LG I+ YD+V+RLN+APV G+E DVGSKTT
Sbjct: 145 EYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPVKGFEKDVGSKTT 204
Query: 685 MRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESIL-SDKKRVRKGFWKQPPLIWD 861
+R+ YPE A P+ + D+L VL FK DF W++ I+ ++ GFWK
Sbjct: 205 LRITYPEGAMQRPEQYER-DSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVP 263
Query: 862 VNPKQIRILNPFFMENCS 915
P +IRILNP+F++ +
Sbjct: 264 KEPPEIRILNPYFIQEAA 281
Score = 32.3 bits (72), Expect(2) = 4e-39
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G +A+T+ CD +AGFGY D +HYYE +
Sbjct: 303 GSVAVTMALHGCDEVAVAGFGY-DMSTPNAPLHYYETV 339
>ref|NP_777629.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform g [Homo sapiens].
Length = 359
Score = 148 bits (374), Expect(2) = 4e-39
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 328 CLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITS 507
C G A ++ +F +S+ P+FL W + + P+G KG ++L+ +L++T
Sbjct: 70 CKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIRE-FVPPFGIKGQDNLIKAILSVTK 128
Query: 508 -YSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
Y + ++ L+CRRC++VGNG L N LG I+ YD+V+RLN+APV G+E DVGSKTT
Sbjct: 129 EYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPVKGFEKDVGSKTT 188
Query: 685 MRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESIL-SDKKRVRKGFWKQPPLIWD 861
+R+ YPE A P+ + D+L VL FK DF W++ I+ ++ GFWK
Sbjct: 189 LRITYPEGAMQRPEQYER-DSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVP 247
Query: 862 VNPKQIRILNPFFMENCS 915
P +IRILNP+F++ +
Sbjct: 248 KEPPEIRILNPYFIQEAA 265
Score = 32.3 bits (72), Expect(2) = 4e-39
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYEQI 1090
G +A+T+ CD +AGFGY D +HYYE +
Sbjct: 287 GSVAVTMALHGCDEVAVAGFGY-DMSTPNAPLHYYETV 323
>ref|NP_006091.1| type 2 lactosamine alpha-2,3-sialyltransferase [Homo sapiens].
Length = 331
Score = 138 bits (348), Expect = 8e-33
Identities = 78/204 (38%), Positives = 116/204 (56%), Gaps = 4/204 (1%)
Frame = +1
Query: 316 KKEPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKT---PSAYELPYGTKGSEDLLL 486
K +PCL A + + + Q P FL D+ + + ++LPYG + S +
Sbjct: 41 KIQPCLSKPAFASLLR----FHQFHP-FLCAADFRKIASLYGSDKFDLPYGMRTSAEYFR 95
Query: 487 RVLA-ITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEG 663
L+ + S + + + C++CVVVGNG L+N LGE I+ YDV+IR+NN PV G+E
Sbjct: 96 LALSKLQSCDLFDEFDNIPCKKCVVVGNGGVLKNKTLGEKIDSYDVIIRMNNGPVLGHEE 155
Query: 664 DVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQ 843
+VG +TT RLFYPES F+ + ++P+T ++L AFK D W+ +L K GFWK+
Sbjct: 156 EVGRRTTFRLFYPESV-FSDPIHNDPNTTVILTAFKPHDLRWLLELLMGDKINTNGFWKK 214
Query: 844 PPLIWDVNPKQIRILNPFFMENCS 915
P L P QIRIL+PF + +
Sbjct: 215 PALNLIYKPYQIRILDPFIIRTAA 238
>ref|NP_777626.1| CMP-N-acetylneuraminate-beta-1,4-galactoside
alpha-2,3-sialyltransferase isoform d [Homo sapiens].
Length = 277
Score = 128 bits (322), Expect = 8e-30
Identities = 68/166 (40%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Frame = +1
Query: 328 CLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITS 507
C G A ++ +F +S+ P+FL W + + P+G KG ++L+ +L++T
Sbjct: 86 CKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIRE-FVPPFGIKGQDNLIKAILSVTK 144
Query: 508 -YSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTT 684
Y + ++ L+CRRC++VGNG L N LG I+ YD+V+RLN+APV G+E DVGSKTT
Sbjct: 145 EYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVRLNSAPVKGFEKDVGSKTT 204
Query: 685 MRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRV 822
+R+ YPE A P+ + D+L VL FK DF W++ I+ K+RV
Sbjct: 205 LRITYPEGAMQRPEQYER-DSLFVLAGFKWQDFKWLKYIVY-KERV 248
>ref|NP_003887.3| lactosylceramide alpha-2,3-sialyltransferase isoform 1 [Homo
sapiens].
Length = 418
Score = 115 bits (287), Expect(2) = 1e-29
Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 4/161 (2%)
Frame = +1
Query: 436 SAYELPYG-TKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINK 612
S Y+ P+G K S + + + + +PE ++ CRRCVV+G+G L LG +N+
Sbjct: 156 SKYDPPFGFRKFSSKVQTLLELLPEHDLPEHLKAKTCRRCVVIGSGGILHGLELGHTLNQ 215
Query: 613 YDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWI 792
+DVVIRLN+APV GY VG+KTT+R+ YPE A + +E + L V V FK++DF+W+
Sbjct: 216 FDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLS-DLEYYSNDLFVAVLFKSVDFNWL 274
Query: 793 ESILSDKKR---VRKGFWKQPPLIWDVNPKQIRILNPFFME 906
++++ + VR FWKQ + PK RILNP ++
Sbjct: 275 QAMVKKETLPFWVRLFFWKQVAEKIPLQPKHFRILNPVIIK 315
Score = 33.9 bits (76), Expect(2) = 1e-29
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 977 GLLAITLXXSLCDLXHIAGFGYPDAXKQKESIHYYE 1084
G++A+ L LCD +AGFGY D + + +HY++
Sbjct: 342 GVIAVVLATHLCDEVSLAGFGY-DLNQPRTPLHYFD 376
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,367,534
Number of extensions: 1001984
Number of successful extensions: 3725
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 3690
Number of HSP's successfully gapped: 33
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008895
(1097 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 387 e-105
>Sscrofa_Chr09
|| Length = 153670197
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 627 caggctaaacaatgccccggtggctggctacgagggtgacgtgggctctaagaccaccat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59317560 caggctaaacaatgccccggtggctggctacgagggtgacgtgggctctaagaccaccat 59317619
Query: 687 gcgtctcttctaccctgaatctgcccacttcaaccccaaagtggaggacaacccggacac 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59317620 gcgtctcttctaccctgaatctgcccacttcaaccccaaagtggaggacaacccggacac 59317679
Query: 747 actcctcgtcctggtagctttcaaggccatggacttccactggattgagagcatcttgag 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59317680 actcctcgtcctggtagctttcaaggccatggacttccactggattgagagcatcttgag 59317739
Query: 807 tgacaagaagcgggt 821
|||||||||||||||
Sbjct: 59317740 tgacaagaagcgggt 59317754
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 ggccggcccctcgtccgggacaggggcccgggccgagcggagccgccgcgctagcgccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59108942 ggccggcccctcgtccgggacaggggcccgggccgagcggagccgccgcgctagcgccgc 59109001
Query: 61 gcctctagcccgtgcgcctagcggatcggagctgcgcgcggaactgtcctgccccgcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59109002 gcctctagcccgtgcgcctagcggatcggagctgcgcgcggaactgtcctgccccgcccc 59109061
Query: 121 gcgctacccgcgagggtg 138
||||||||||||||||||
Sbjct: 59109062 gcgctacccgcgagggtg 59109079
Score = 244 bits (123), Expect = 9e-62
Identities = 144/147 (97%), Gaps = 3/147 (2%)
Strand = Plus / Plus
Query: 819 ggttcgaaagggtttctggaaacagcctcccctcatctgggacgtcaaccccaaacagat 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59318442 ggttcgaaagggtttctggaaacagcctcccctcatctgggacgtcaaccccaaacagat 59318501
Query: 879 tcgaattctcaaccccttcttcatggagaattgcagctgacaaactgctaaggctgccga 938
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 59318502 tcgaattctcaaccccttcttcatggag-attgcagctgacaaactgctaaggctgccga 59318560
Query: 939 tgcaacagcc-cacacagattaagcag 964
|||||||||| |||| |||||||||||
Sbjct: 59318561 tgcaacagccacaca-agattaagcag 59318586
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 532 aggctcaagtgccgccgctgcgtggtggtggggaatgggcatcggctgcgcaacagcttg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59317370 aggctcaagtgccgccgctgcgtggtggtggggaatgggcatcggctgcgcaacagcttg 59317429
Query: 592 ctgggagaggccatcaacaagtacgacgtggtcatcagg 630
|||||||||||||||||||||||||||||||||||||||
Sbjct: 59317430 ctgggagaggccatcaacaagtacgacgtggtcatcagg 59317468
Score = 194 bits (98), Expect = 7e-47
Identities = 125/136 (91%)
Strand = Plus / Plus
Query: 962 cagaagcccaccacgggcctgctggccatcaccctgnccnnntcactgtgtgacctgntg 1021
|||||||||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 59322595 cagaagcccaccacgggcctgctggccatcaccctggccctccacctgtgtgacctggtg 59322654
Query: 1022 cacattgctggcttcggctacccagatgcccnaaaacagaaggagtccattcactactat 1081
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 59322655 cacattgctggcttcggctacccagatgcccaaaacaagaaggagtccattcactactat 59322714
Query: 1082 gagcaaatcaccatca 1097
||||||||||||||||
Sbjct: 59322715 gagcaaatcaccatca 59322730
Score = 186 bits (94), Expect = 2e-44
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 375 ctactcccaagaacagcccatcttcctgcaacttaaggattatttctgggtcaagacgcc 434
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 59316557 ctactcccaagaacagcccatcttcctgcaacttaaggattacttctgggtcaagacgcc 59316616
Query: 435 atctgcttacgagctgccctacgggaccaaggggagtg 472
||||||||||||||||||||||||||||||||||||||
Sbjct: 59316617 atctgcttacgagctgccctacgggaccaaggggagtg 59316654
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 209 gctggaagctcctagccatgttggctttcgtcctggtggtcatggtatggtactccatct 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59315826 gctggaagctcctagccatgttggctttcgtcctggtggtcatggtatggtactccatct 59315885
Query: 269 cccgagaagacagatacattgagct 293
|||||||||||||||||||||||||
Sbjct: 59315886 cccgagaagacagatacattgagct 59315910
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 135 ggtggcccgaggcagccgggatgacagctctccccaggaaccctgctacttgagaaacat 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59315192 ggtggcccgaggcagccgggatgacagctctccccaggaaccctgctacttgagaaacat 59315251
Query: 195 gatcagcaagtgccg 209
|||||||||||||||
Sbjct: 59315252 gatcagcaagtgccg 59315266
Score = 147 bits (74), Expect = 1e-32
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 294 tttttattttcccatcctagagaagaaggagccatgcctccagggggaggcggagaggaa 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 59316267 tttttattttcccatcctagagaagaaggagccatgcctccagggggaggcggagaagaa 59316326
Query: 354 ggtctccaagctctttggcaa 374
||||||| |||||||||||||
Sbjct: 59316327 ggtctccnagctctttggcaa 59316347
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 472 gaagacctgcttctccgggtgctggccatcaccagctattccattccagagagcatccag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59316844 gaagacctgcttctccgggtgctggccatcaccagctattccattccagagagcatccag 59316903
Query: 532 agg 534
|||
Sbjct: 59316904 agg 59316906
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,916,623
Number of extensions: 135
Number of successful extensions: 135
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 10
Length of query: 1097
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1076
Effective length of database: 2,808,413,156
Effective search space: 3021852555856
Effective search space used: 3021852555856
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)