Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008912
(1242 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776557.1| oxidized low-density lipoprotein receptor 1 [Bo... 361 e-100
Alignment gi|NP_001027022.1| C-type lectin domain family 7 member A [Bos ... 118 1e-26
Alignment gi|NP_001068607.1| NKG2-D type II integral membrane protein [Bo... 95 1e-19
Alignment gi|NP_001069876.1| C-type lectin domain family 12 member B [Bos... 92 1e-18
Alignment gi|NP_001069549.1| C-type lectin domain family 1 member A [Bos ... 88 2e-17
Alignment gi|XP_002687883.1| PREDICTED: Killer cell lectin-like receptor ... 87 4e-17
Alignment gi|XP_002704478.1| PREDICTED: Killer cell lectin-like receptor ... 87 4e-17
Alignment gi|XP_002687853.1| PREDICTED: QDED721-like [Bos taurus]. 84 2e-16
Alignment gi|XP_001251939.1| PREDICTED: C-type lectin domain family 1, me... 84 2e-16
Alignment gi|XP_002687852.1| PREDICTED: C-type lectin domain family 9, me... 80 5e-15
>ref|NP_776557.1| oxidized low-density lipoprotein receptor 1 [Bos taurus].
Length = 270
Score = 361 bits (927), Expect = e-100
Identities = 181/274 (66%), Positives = 202/274 (73%)
Frame = +1
Query: 115 MTLDDLKSNSMKDQPDEKSNGDKAEGPQSLSTWRWRPAAXXXXXXXXXXXXXXXXXXXXX 294
MT+DD K MKDQ D+K NG A+G +S+WRW PAA
Sbjct: 1 MTVDDPKG--MKDQLDQKPNGKTAKG--FVSSWRWYPAAVTLGVLCLGLLVTVILLILQL 56
Query: 295 XXXXXXXKQQKVKLTHQEDILEGQALAQRQAEKSSQESQRELTEMIETLAHKLDEKSXXX 474
K+Q+ +THQEDILEGQ LAQR++EKS+QESQ+EL EMIETLAHKLDEKS
Sbjct: 57 SQVSDLIKKQQANITHQEDILEGQILAQRRSEKSAQESQKELKEMIETLAHKLDEKSKKL 116
Query: 475 XXXXXXXXXXXXXXXXAANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLL 654
AAN+SGPCPQDWLWHEENCY+FSSG F+WEKS+ENCLSLDA LL
Sbjct: 117 MELHRQNLNLQEVLKEAANYSGPCPQDWLWHEENCYQFSSGSFNWEKSQENCLSLDAHLL 176
Query: 655 KINSTDDLEFIQQTIAHSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPS 834
KINSTD+LEFIQQ IAHSSFPFWMGLS+RKPN SWLWEDGTPL PHLFR+QGA S+MYPS
Sbjct: 177 KINSTDELEFIQQMIAHSSFPFWMGLSMRKPNYSWLWEDGTPLTPHLFRIQGAVSRMYPS 236
Query: 835 GTCAYIHRGIVFAENCILNAFSICQKRANLLRAQ 936
GTCAYI RG VFAENCIL AFSICQK+ANLLRAQ
Sbjct: 237 GTCAYIQRGTVFAENCILTAFSICQKKANLLRAQ 270
>ref|NP_001027022.1| C-type lectin domain family 7 member A [Bos taurus].
Length = 247
Score = 118 bits (295), Expect = 1e-26
Identities = 51/132 (38%), Positives = 86/132 (65%), Gaps = 1/132 (0%)
Frame = +1
Query: 532 FSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFI-QQTIAHS 708
FS CP +W+ HE++CY FS+ SW+ S+ C L + LLKI+S+ +LEFI +Q +
Sbjct: 116 FSSSCPPNWITHEDSCYLFSTLLDSWDGSKRQCFQLGSHLLKIDSSKELEFISRQVSSQP 175
Query: 709 SFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCIL 888
FW+GLS R+ WLWEDG+ L+ +LF+++ ++ S CA+IH ++ + C +
Sbjct: 176 DHSFWIGLSRRQTEEPWLWEDGSTLLSNLFQIRSTVTEKDSSHNCAWIHVSDIYDQLCSV 235
Query: 889 NAFSICQKRANL 924
+++SIC+K+ ++
Sbjct: 236 HSYSICEKKLSV 247
>ref|NP_001068607.1| NKG2-D type II integral membrane protein [Bos taurus].
Length = 202
Score = 94.7 bits (234), Expect = 1e-19
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = +1
Query: 529 NFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHS 708
N+ GPCP++W+ + NCY+F + SW +S+ +C+S ++ LLKI S DD +F++ ++
Sbjct: 80 NYCGPCPKNWICYRNNCYQFFNESKSWHQSQASCMSQNSSLLKIYSKDDQDFLKLVKSY- 138
Query: 709 SFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCA-YIHRGIVFAENCI 885
WMGL N SW WEDG+ L+P+L + +GTCA Y + ENC+
Sbjct: 139 ---HWMGLVQVSTNGSWQWEDGSILLPNLLTM-----VEMQNGTCAVYGSSFKAYTENCL 190
Query: 886 LNAFSICQKR 915
IC +R
Sbjct: 191 TPNTYICMQR 200
>ref|NP_001069876.1| C-type lectin domain family 12 member B [Bos taurus].
Length = 276
Score = 91.7 bits (226), Expect = 1e-18
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFS-SGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFP 717
PCP+ W W++ +CY F+ + +W SR+NC+ ++ L+KI+S ++ +F++
Sbjct: 142 PCPKTWKWYQTSCYYFAVNEEKTWPNSRKNCMDKNSTLVKIDSLEEKDFLRSQPLPKFPF 201
Query: 718 FWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAF 897
FW+GLS SWLWED + P LF A Q+ S CAY G ++ C
Sbjct: 202 FWLGLSWDPSGRSWLWEDSSRPSPSLFSAYEYA-QINESKGCAYFQNGNIYISRCSAEIS 260
Query: 898 SICQKRANLLRAQ 936
IC+K A L++ +
Sbjct: 261 WICEKTAALVKIE 273
>ref|NP_001069549.1| C-type lectin domain family 1 member A [Bos taurus].
Length = 278
Score = 87.8 bits (216), Expect = 2e-17
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEF-IQQTIAHSSFP 717
PCP+ W WH + CY+F SW+ C++ ++ +LKIN+ + LEF + Q+ + +
Sbjct: 136 PCPEKWKWHGDKCYQFYKESKSWQGCEYFCIAENSTMLKINTQEVLEFAMPQSYSEFFYS 195
Query: 718 FWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAF 897
+W GLS +WLW DGTP LF + + + S C I G F+++C
Sbjct: 196 YWTGLSRNSSGKAWLWMDGTPYSSELFDVMIDLTSL-RSRDCVTILNGKAFSKDCRELRR 254
Query: 898 SICQKRANLLRAQ 936
C+K A +++ Q
Sbjct: 255 CACEKAAAMVKVQ 267
>ref|XP_002687883.1| PREDICTED: Killer cell lectin-like receptor subfamily B member 1B
allele A-like [Bos taurus].
Length = 248
Score = 86.7 bits (213), Expect = 4e-17
Identities = 43/122 (35%), Positives = 65/122 (53%)
Frame = +1
Query: 544 CPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPFW 723
CP W+ + CY F SW S++ C ++ + LL I +L+F+Q +I + FW
Sbjct: 121 CPNGWVQKKGKCYNFFKNYQSWIDSQKLCSTMKSHLLVIQDKAELDFLQSSIQDGIY-FW 179
Query: 724 MGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFSI 903
+GL++ P N+W W DGTPL LF++ G CA I + VF+E C + + I
Sbjct: 180 IGLNISYPQNTWTWLDGTPLNLQLFQVLGEVE----DDACALITKKGVFSEKCPIQNYWI 235
Query: 904 CQ 909
CQ
Sbjct: 236 CQ 237
>ref|XP_002704478.1| PREDICTED: Killer cell lectin-like receptor subfamily B member 1B
allele A-like [Bos taurus].
Length = 248
Score = 86.7 bits (213), Expect = 4e-17
Identities = 43/122 (35%), Positives = 65/122 (53%)
Frame = +1
Query: 544 CPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPFW 723
CP W+ + CY F SW S++ C ++ + LL I +L+F+Q +I + FW
Sbjct: 121 CPNGWVQKKGKCYNFFKNYQSWIDSQKLCSTMKSHLLVIQDKAELDFLQSSIQDGIY-FW 179
Query: 724 MGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFSI 903
+GL++ P N+W W DGTPL LF++ G CA I + VF+E C + + I
Sbjct: 180 IGLNISYPQNTWTWLDGTPLNLQLFQVLGEVE----DDACALITKKGVFSEKCPIQNYWI 235
Query: 904 CQ 909
CQ
Sbjct: 236 CQ 237
>ref|XP_002687853.1| PREDICTED: QDED721-like [Bos taurus].
Length = 226
Score = 84.3 bits (207), Expect = 2e-16
Identities = 37/132 (28%), Positives = 74/132 (56%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPF 720
PC W ++ ++CY F +WE+S++ C+ ++A L+KI+S L++ + +
Sbjct: 98 PCDTHWRYYGDSCYGFFRHNLTWEESKKYCIDVNATLVKISSKSILQYFN---SRTGLIR 154
Query: 721 WMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFS 900
W+GLS +K ++ W WEDG+ L + +L G ++ + CAY H G + C +
Sbjct: 155 WIGLSRQKSSDVWRWEDGSVLSKTMLKLSGTGTE---NMNCAYFHNGNIHPTFCENRHYL 211
Query: 901 ICQKRANLLRAQ 936
+C+++A +++ +
Sbjct: 212 MCERKAGVVKVE 223
>ref|XP_001251939.1| PREDICTED: C-type lectin domain family 1, member B [Bos taurus].
Length = 226
Score = 84.3 bits (207), Expect = 2e-16
Identities = 37/132 (28%), Positives = 74/132 (56%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPF 720
PC W ++ ++CY F +WE+S++ C+ ++A L+KI+S L++ + +
Sbjct: 98 PCDTHWRYYGDSCYGFFRHNLTWEESKKYCIDVNATLVKISSKSILQYFN---SRTGLIR 154
Query: 721 WMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFS 900
W+GLS +K ++ W WEDG+ L + +L G ++ + CAY H G + C +
Sbjct: 155 WIGLSRQKSSDVWRWEDGSVLSKTMLKLSGTGTE---NMNCAYFHNGNIHPTFCENRHYL 211
Query: 901 ICQKRANLLRAQ 936
+C+++A +++ +
Sbjct: 212 MCERKAGVVKVE 223
>ref|XP_002687852.1| PREDICTED: C-type lectin domain family 9, member A-like [Bos
taurus].
Length = 241
Score = 79.7 bits (195), Expect = 5e-15
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTI--AHSSF 714
PCP +W+ + E+CY W SR++C + LL+I S ++++FI ++ ++
Sbjct: 112 PCPDNWIQNGESCYHVFESWTFWHTSRKDCWKKGSDLLQIESKEEMDFITGSLKKIKRNY 171
Query: 715 PFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNA 894
+W+GLS N WLW+DG+ L QG S + C Y+ + + NC +
Sbjct: 172 DYWVGLSQNGSNQPWLWQDGSSPSADLLPRQGPQS---TNQVCGYLRDNDLSSANCSVWK 228
Query: 895 FSICQKRA 918
+ IC+K A
Sbjct: 229 YFICEKYA 236
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,389,128
Number of extensions: 1283887
Number of successful extensions: 4015
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 3918
Number of HSP's successfully gapped: 80
Length of query: 414
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 309
Effective length of database: 14,207,134
Effective search space: 4390004406
Effective search space used: 4390004406
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008912
(1242 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543821.2| PREDICTED: similar to oxidised low density lipo... 347 1e-95
Alignment gi|XP_854143.1| PREDICTED: similar to C-type lectin, superfamil... 109 6e-24
Alignment gi|XP_543823.2| PREDICTED: similar to C-type lectin domain fami... 92 1e-18
Alignment gi|XP_543822.2| PREDICTED: similar to C-type lectin-like recept... 92 1e-18
Alignment gi|XP_854106.1| PREDICTED: similar to NKG2-D type II integral m... 84 2e-16
Alignment gi|XP_854151.1| PREDICTED: similar to C-type lectin domain fami... 83 6e-16
Alignment gi|XP_854191.1| PREDICTED: similar to Killer cell lectin-like r... 73 5e-13
Alignment gi|XP_854160.1| PREDICTED: similar to macrophage antigen h [Can... 72 8e-13
Alignment gi|NP_001041500.1| natural killer cells antigen CD94 [Canis lup... 71 2e-12
Alignment gi|NP_001124304.1| CD209 molecule [Canis lupus familiaris]. 70 3e-12
>ref|XP_543821.2| PREDICTED: similar to oxidised low density lipoprotein
(lectin-like) receptor 1 [Canis familiaris].
Length = 274
Score = 347 bits (891), Expect = 1e-95
Identities = 172/273 (63%), Positives = 197/273 (72%)
Frame = +1
Query: 115 MTLDDLKSNSMKDQPDEKSNGDKAEGPQSLSTWRWRPAAXXXXXXXXXXXXXXXXXXXXX 294
MT DD KS +MKD+PD+K NG KA+G LS+ W PAA
Sbjct: 1 MTFDDFKSKTMKDKPDQKPNGKKAKGLHFLSSRWWCPAAVTLGILCLGLLVTLILLAMQL 60
Query: 295 XXXXXXXKQQKVKLTHQEDILEGQALAQRQAEKSSQESQRELTEMIETLAHKLDEKSXXX 474
KQQ+ LTHQE ILEGQ LAQ+QAEK+SQES+REL + IETL KLDEKS
Sbjct: 61 SQVSNLLKQQQANLTHQEIILEGQILAQQQAEKTSQESERELKKTIETLTQKLDEKSKKQ 120
Query: 475 XXXXXXXXXXXXXXXXAANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLL 654
AANFSG CPQDWLWHEENCY FSSGPF+WEKS+ENCLSLDAQ+L
Sbjct: 121 MELHHQNLNLQEALRKAANFSGHCPQDWLWHEENCYLFSSGPFNWEKSQENCLSLDAQML 180
Query: 655 KINSTDDLEFIQQTIAHSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPS 834
INST+DLEFIQQ AHS+FPFWMGLSLRKP++SWLWEDG+PLMPHLFRLQG S +YPS
Sbjct: 181 IINSTEDLEFIQQASAHSNFPFWMGLSLRKPSSSWLWEDGSPLMPHLFRLQGPVSHVYPS 240
Query: 835 GTCAYIHRGIVFAENCILNAFSICQKRANLLRA 933
G+CAY+ RG VFA+NCIL+AF+ICQK+ANLLRA
Sbjct: 241 GSCAYLQRGAVFADNCILSAFTICQKKANLLRA 273
>ref|XP_854143.1| PREDICTED: similar to C-type lectin, superfamily member 12 isoform
a [Canis familiaris].
Length = 246
Score = 109 bits (272), Expect = 6e-24
Identities = 48/129 (37%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Frame = +1
Query: 532 FSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFI-QQTIAHS 708
FS CP +W+ H+ NCY FS+ SW +S+ +C L + LLKI++ ++LEFI +Q +
Sbjct: 116 FSSSCPPNWITHKNNCYLFSTSLASWNRSKRHCSQLHSNLLKIDTAEELEFIVRQVSSQP 175
Query: 709 SFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCIL 888
FW+GLS + LWEDG+ +LF+++ +Q S C +IH I++ + C +
Sbjct: 176 DNSFWIGLSRHQTEGPLLWEDGSVFSSNLFQIRSTDTQENSSHNCVWIHLSIIYDQLCSV 235
Query: 889 NAFSICQKR 915
++SIC+K+
Sbjct: 236 PSYSICEKK 244
>ref|XP_543823.2| PREDICTED: similar to C-type lectin domain family 1, member B
[Canis familiaris].
Length = 277
Score = 92.0 bits (227), Expect = 1e-18
Identities = 41/129 (31%), Positives = 76/129 (58%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPF 720
PC ++W ++ ++CY F +WE+S++ C++++A LLKI S L++I+ + + F
Sbjct: 149 PCDRNWRYYGDSCYGFFKHNLTWEESKQYCINVNATLLKITSQKVLKYIK---SRTGFIR 205
Query: 721 WMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFS 900
W+GLS + PN W+WEDG+ +F L G + + CAY + G ++ C +
Sbjct: 206 WVGLSRKNPNEIWMWEDGSVPSKDVFELSGNERE---NMNCAYFYNGKIYPTVCKNKHYL 262
Query: 901 ICQKRANLL 927
IC+++A ++
Sbjct: 263 ICERKAGMV 271
>ref|XP_543822.2| PREDICTED: similar to C-type lectin-like receptor-1 [Canis
familiaris].
Length = 320
Score = 91.7 bits (226), Expect = 1e-18
Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 1/269 (0%)
Frame = +1
Query: 133 KSNSMKDQPDEKSNGDKAEGPQSLSTWRWRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXX 312
+++S QP+ + G ++ P S+ WRP A
Sbjct: 75 RASSTTQQPELRHTGHRS--PSSV----WRPVALTLLSLCLVLLIGLLALGLVFFQIYQL 128
Query: 313 XKQQKVKLTHQEDILEGQALAQRQAEKSSQESQRELTEMIETLAHKLDEKSXXXXXXXXX 492
Q+ ++H+E+ L G Q Q S Q R+L E+++ +A KL +
Sbjct: 129 SNTQQDSISHKEERL-GNLSRQLQ---SLQTKNRKLAEILQRVAEKLCRE---------- 174
Query: 493 XXXXXXXXXXAANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTD 672
N PCP++W WH + CY+F SW+ C++ +A +LKIN+ +
Sbjct: 175 -----LYNKSGENRCSPCPEEWKWHGDKCYRFYRESKSWQGCEYFCIAENATMLKINTQE 229
Query: 673 DLEF-IQQTIAHSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAY 849
L+F + Q+ + + +W GLS +WLW DG P LF + + + + C
Sbjct: 230 VLDFAMPQSYSEFFYSYWTGLSRNGSGKAWLWMDGAPYSSELFEIIIDFTSL-RNRDCVT 288
Query: 850 IHRGIVFAENCILNAFSICQKRANLLRAQ 936
I G F+++C C++RA ++ +
Sbjct: 289 ILNGKAFSKDCKELRRCACERRAATVKPE 317
>ref|XP_854106.1| PREDICTED: similar to NKG2-D type II integral membrane protein
(NKG2-D activating NK receptor) (NK cell receptor D)
(Killer cell lectin-like receptor subfamily K member 1)
[Canis familiaris].
Length = 185
Score = 84.3 bits (207), Expect = 2e-16
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Frame = +1
Query: 529 NFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHS 708
++ GPCP++W+ + +CY+F + SW +S+ +C S ++ LLKI S +D +F + ++
Sbjct: 63 SYCGPCPKNWICYRNSCYQFFNESKSWYQSQASCRSQNSSLLKIYSREDQDFFKLVKSY- 121
Query: 709 SFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIV-FAENCI 885
WMGL N SW WEDGT L+P+ + +GTCA + ENC+
Sbjct: 122 ---HWMGLIQIPTNGSWQWEDGTILLPNQLTM-----VEMQNGTCAVYGSSFKGYTENCL 173
Query: 886 LNAFSICQKR 915
IC +R
Sbjct: 174 TPNTYICMQR 183
>ref|XP_854151.1| PREDICTED: similar to C-type lectin domain family 9, member A
[Canis familiaris].
Length = 241
Score = 82.8 bits (203), Expect = 6e-16
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Frame = +1
Query: 523 AANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTI- 699
+A+ PCP +W+ + E+CY W S+E+CL + LL+I+S ++++FI ++
Sbjct: 106 SAHNCSPCPDNWIQNGESCYHVFENWKIWHTSKEDCLKEGSNLLQIDSKEEMDFITGSLK 165
Query: 700 -AHSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAE 876
S F +W+GLS + WLW+DG+ P L +Q S + C Y+ + +
Sbjct: 166 KVKSGFDYWVGLSQDGLSKPWLWQDGSSPSPDLSPVQTLQS---TNQLCGYLKDKFLSSA 222
Query: 877 NCILNAFSICQKRA 918
NC + + IC+K A
Sbjct: 223 NCSIWKYFICEKYA 236
>ref|XP_854191.1| PREDICTED: similar to Killer cell lectin-like receptor subfamily F,
member 1 (Lectin-like receptor F1) (Activating
coreceptor NKp80) [Canis familiaris].
Length = 222
Score = 73.2 bits (178), Expect = 5e-13
Identities = 40/129 (31%), Positives = 65/129 (50%)
Frame = +1
Query: 523 AANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIA 702
A + G CP +WL ++E CY FS+ SW S CL + L I ++ FIQ+ +
Sbjct: 94 ATDHIGLCPSEWLKYQEKCYWFSNEMKSWSDSYGYCLERKSHLPIIQDQLEMAFIQKNLK 153
Query: 703 HSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENC 882
S++ W+GL+ +W W DG+ L ++F ++G A + +CA +++E C
Sbjct: 154 QSNY-VWIGLNFTSLVRTWTWVDGSSLDSNIFVIKGPAKE----DSCAATKEDKIYSETC 208
Query: 883 ILNAFSICQ 909
ICQ
Sbjct: 209 SSVFKWICQ 217
>ref|XP_854160.1| PREDICTED: similar to macrophage antigen h [Canis familiaris].
Length = 227
Score = 72.4 bits (176), Expect = 8e-13
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFS-WEKSRENCLSLDAQLLKINSTDDLEFIQ-QTIAHSSF 714
PCP+ W W++ +CY F++ + W SR+ C+ ++ L+KI+S ++ +F++ Q + SF
Sbjct: 142 PCPKMWQWYQHSCYYFATNEENTWTNSRKYCMDKNSTLMKIDSLEEKDFLKSQPLPTLSF 201
Query: 715 PFWMGLSLRKPNNSWLWEDGTPLMPHL 795
FW+GLS +WLWEDG+ P L
Sbjct: 202 -FWLGLSWDPSGRNWLWEDGSVPSPSL 227
>ref|NP_001041500.1| natural killer cells antigen CD94 [Canis lupus familiaris].
Length = 179
Score = 71.2 bits (173), Expect = 2e-12
Identities = 32/86 (37%), Positives = 50/86 (58%)
Frame = +1
Query: 544 CPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPFW 723
CP+ W+ H+ NCY F SW +SR+ C S ++ LL I + D+L F ++ S + +W
Sbjct: 61 CPKRWIGHQCNCYLFFDELKSWTESRDFCASQNSSLLHIQNRDELRF----VSSSKYFYW 116
Query: 724 MGLSLRKPNNSWLWEDGTPLMPHLFR 801
+G+ K N +WLWE+G L L +
Sbjct: 117 IGVYYSKENGTWLWENGLALPQDLLQ 142
>ref|NP_001124304.1| CD209 molecule [Canis lupus familiaris].
Length = 246
Score = 70.5 bits (171), Expect = 3e-12
Identities = 40/129 (31%), Positives = 63/129 (48%)
Frame = +1
Query: 526 ANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAH 705
A PCP W +E+CY FS +W++S C +L AQL+ INST++ +F++
Sbjct: 112 AGLCRPCPWKWELFQESCYFFSQTQNTWKESISACQNLRAQLVIINSTEEQKFLKSWNTR 171
Query: 706 SSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCI 885
++ W+GLS SW W D TPL ++ +G + + C ++ C
Sbjct: 172 NNQRTWIGLSDHHNEGSWKWVDNTPLQLSFWK-EGEPNN-HGDEDCVELYSDGWNDNRCS 229
Query: 886 LNAFSICQK 912
F IC+K
Sbjct: 230 TENFWICKK 238
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,393,358
Number of extensions: 1315908
Number of successful extensions: 4235
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 4190
Number of HSP's successfully gapped: 29
Length of query: 414
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 309
Effective length of database: 15,374,224
Effective search space: 4750635216
Effective search space used: 4750635216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008912
(1242 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998970.1| oxidized low-density lipoprotein receptor 1 [Su... 449 e-126
Alignment gi|NP_001139338.1| C-type lectin domain family 7 member A [Sus ... 110 2e-24
Alignment gi|XP_003126534.1| PREDICTED: c-type lectin domain family 12 me... 96 5e-20
Alignment gi|NP_998978.2| NKG2-D type II integral membrane protein [Sus s... 84 2e-16
Alignment gi|XP_003126538.1| PREDICTED: killer cell lectin-like receptor ... 83 3e-16
Alignment gi|XP_003126533.2| PREDICTED: c-type lectin domain family 1 mem... 82 5e-16
Alignment gi|XP_003355626.1| PREDICTED: c-type lectin domain family 1 mem... 82 6e-16
Alignment gi|XP_003126532.1| PREDICTED: c-type lectin domain family 1 mem... 82 6e-16
Alignment gi|XP_003126535.1| PREDICTED: c-type lectin domain family 12 me... 70 3e-12
Alignment gi|NP_001123444.1| CD209 antigen [Sus scrofa]. 67 2e-11
>ref|NP_998970.1| oxidized low-density lipoprotein receptor 1 [Sus scrofa].
Length = 274
Score = 449 bits (1155), Expect = e-126
Identities = 225/274 (82%), Positives = 226/274 (82%)
Frame = +1
Query: 115 MTLDDLKSNSMKDQPDEKSNGDKAEGPQSLSTWRWRPAAXXXXXXXXXXXXXXXXXXXXX 294
MTLDDLKSNSMKDQPDEKSNGDKAEGP+SLST RWRPAA
Sbjct: 1 MTLDDLKSNSMKDQPDEKSNGDKAEGPRSLSTLRWRPAALILGLLCLGLLVTVILLIIQL 60
Query: 295 XXXXXXXKQQKVKLTHQEDILEGQALAQRQAEKSSQESQRELTEMIETLAHKLDEKSXXX 474
KQQKVKLTHQEDILEGQALAQRQAEKSSQESQRELTEMIETLAHKLDEKS
Sbjct: 61 SQVSDLLKQQKVKLTHQEDILEGQALAQRQAEKSSQESQRELTEMIETLAHKLDEKSKKL 120
Query: 475 XXXXXXXXXXXXXXXXAANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLL 654
AANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLL
Sbjct: 121 MELQQQNLNLQKALEKAANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLL 180
Query: 655 KINSTDDLEFIQQTIAHSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPS 834
KINSTDDLEFIQQTIAHSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPS
Sbjct: 181 KINSTDDLEFIQQTIAHSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPS 240
Query: 835 GTCAYIHRGIVFAENCILNAFSICQKRANLLRAQ 936
GTCAYIHRGIVFAENCILNAFSICQKRANLLRAQ
Sbjct: 241 GTCAYIHRGIVFAENCILNAFSICQKRANLLRAQ 274
>ref|NP_001139338.1| C-type lectin domain family 7 member A [Sus scrofa].
Length = 168
Score = 110 bits (274), Expect = 2e-24
Identities = 48/131 (36%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Frame = +1
Query: 535 SGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHS-S 711
S CP +W+ HE +CY FS+ SW +S+ C L + LLKI+S+ +LEFI + ++
Sbjct: 38 SSSCPPNWITHENSCYLFSTSLDSWNRSKRQCSQLGSYLLKIDSSKELEFISRHVSSQPD 97
Query: 712 FPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILN 891
FW+GLS + WLWEDG+ L+ +LF+++ +Q S C +IH + + C +
Sbjct: 98 HSFWIGLSHSQTEGPWLWEDGSMLLSNLFQIRSTVTQKESSHNCVWIHVSDFYDQLCSVP 157
Query: 892 AFSICQKRANL 924
++SIC+K+ ++
Sbjct: 158 SYSICEKKLSI 168
>ref|XP_003126534.1| PREDICTED: c-type lectin domain family 12 member B-like [Sus
scrofa].
Length = 274
Score = 95.5 bits (236), Expect = 5e-20
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPF-SWEKSRENCLSLDAQLLKINSTDDLEFIQ-QTIAHSSF 714
PCP+ W WH +CY F++ +W SR++C+ ++ L+KI+S ++ F++ Q + SF
Sbjct: 140 PCPKTWHWHRNSCYYFATNEEKTWPNSRKSCMDKNSTLVKIDSLEEKVFLKSQPLPKFSF 199
Query: 715 PFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNA 894
FW+GLS WLWEDGT L P L A QM S CAY +G ++ C
Sbjct: 200 -FWLGLSWDPSGQRWLWEDGTLLSPSLLSTNEYA-QMNRSRGCAYFQKGSIYVSRCSAET 257
Query: 895 FSICQKRA 918
IC+K A
Sbjct: 258 SWICEKTA 265
>ref|NP_998978.2| NKG2-D type II integral membrane protein [Sus scrofa].
Length = 214
Score = 84.0 bits (206), Expect = 2e-16
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
Frame = +1
Query: 529 NFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHS 708
++ GPCP++W+ + +CY+FS+ +W +S+ +C S ++ LLKI S +D +F + ++
Sbjct: 92 SYCGPCPKNWICYRNSCYQFSNESKTWLQSQASCRSQNSSLLKIYSREDQDFFKLVKSY- 150
Query: 709 SFPFWMGLSLRKPNNSWLWEDGTPLMPH---LFRLQGAASQMYPSGTCAYIHRGIVFAEN 879
WMGL N SW WEDG+ L P+ + +Q + +Y S Y EN
Sbjct: 151 ---HWMGLVQIPTNRSWQWEDGSILSPNQITMVEMQNGSCAVYGSSFKGY-------TEN 200
Query: 880 CILNAFSICQKR 915
C+ IC KR
Sbjct: 201 CLTLNTYICMKR 212
>ref|XP_003126538.1| PREDICTED: killer cell lectin-like receptor subfamily F member 1
[Sus scrofa].
Length = 233
Score = 83.2 bits (204), Expect = 3e-16
Identities = 42/124 (33%), Positives = 66/124 (53%)
Frame = +1
Query: 538 GPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFP 717
G CP +WL ++E CY FS+ SW S CL + LL I ++ FIQ+ + S++
Sbjct: 114 GMCPSEWLKYQEKCYWFSNEMKSWSDSHGYCLRRKSHLLIIQDQLEMAFIQKAVKQSNY- 172
Query: 718 FWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAF 897
W+GL+ +W W DG+PL ++F ++G A + +CA I +++E C
Sbjct: 173 VWIGLNFTFQKRTWTWVDGSPLDSNIFLIKGPAKE----NSCATIKENRIYSETCSSVFK 228
Query: 898 SICQ 909
ICQ
Sbjct: 229 WICQ 232
>ref|XP_003126533.2| PREDICTED: c-type lectin domain family 1 member B-like [Sus
scrofa].
Length = 173
Score = 82.4 bits (202), Expect = 5e-16
Identities = 36/128 (28%), Positives = 70/128 (54%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPF 720
PC ++W +H ++CY F +WE+S++ C+ A LLKI S + L+++ + +
Sbjct: 45 PCEKNWRYHGDSCYGFFRHNLTWEESKKYCIDTSATLLKIPSQNILQYL---TSRTGLIR 101
Query: 721 WMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFS 900
W+GLS + +W+WEDG+ ++ + G ++ + CAY H G + C +
Sbjct: 102 WVGLSRQNSKEAWMWEDGSVPSKNMIKFSGNGTE---NMNCAYFHNGKIHPTFCENKHYL 158
Query: 901 ICQKRANL 924
+C+++A +
Sbjct: 159 MCERKAGM 166
>ref|XP_003355626.1| PREDICTED: c-type lectin domain family 1 member B-like [Sus
scrofa].
Length = 226
Score = 82.0 bits (201), Expect = 6e-16
Identities = 36/128 (28%), Positives = 70/128 (54%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPF 720
PC ++W +H ++CY F +WE+S++ C+ A LLKI S + L+++ + +
Sbjct: 98 PCEKNWRYHGDSCYGFFRHNLTWEESKKYCIDTSATLLKIPSQNILQYL---TSRTGLIR 154
Query: 721 WMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFS 900
W+GLS + +W+WEDG+ ++ + G ++ + CAY H G + C +
Sbjct: 155 WVGLSRQNSKEAWMWEDGSVPSKNVIKFSGNGTE---NMNCAYFHNGKIHPTFCENKHYL 211
Query: 901 ICQKRANL 924
+C+++A +
Sbjct: 212 MCERKAGM 219
>ref|XP_003126532.1| PREDICTED: c-type lectin domain family 1 member A-like isoform 2
[Sus scrofa].
Length = 269
Score = 82.0 bits (201), Expect = 6e-16
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEF-IQQTIAHSSFP 717
PCP+ W WH + CY+F SW+ C++ ++ +LKIN+ + LEF + Q+ + +
Sbjct: 136 PCPEKWKWHGDKCYQFYKESKSWQGCEYFCIAENSTMLKINTQEVLEFAMPQSYSEFFYS 195
Query: 718 FWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAF 897
+W GLS + +WLW DG P LF + + + + C I G F+++C
Sbjct: 196 YWTGLSRSSSSKAWLWMDGAPYSSELFEIIIDITSL-RNRDCVTILNGKAFSKDCRELRR 254
Query: 898 SICQKRANLLRAQ 936
C++ A ++ Q
Sbjct: 255 CACERTAAAVKLQ 267
>ref|XP_003126535.1| PREDICTED: c-type lectin domain family 12 member A-like [Sus
scrofa].
Length = 263
Score = 69.7 bits (169), Expect = 3e-12
Identities = 41/132 (31%), Positives = 67/132 (50%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPF 720
PCP++W+WHE++CY +W+KS C + +A LLKI + LEFI+ ++S
Sbjct: 125 PCPKNWMWHEDSCYIVIKLSETWQKSDMICSAQNASLLKIKNKSVLEFIKSRKIYAS--- 181
Query: 721 WMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFS 900
W+GLS RK + D T + F + + S C Y++ V +C
Sbjct: 182 WLGLSPRKTHTVSRKLDETIISSDWFTRN--TNDLNDSMYCGYLYNNRVNYADCTETKRI 239
Query: 901 ICQKRANLLRAQ 936
IC+K A+ ++ +
Sbjct: 240 ICEKLADPMKIE 251
>ref|NP_001123444.1| CD209 antigen [Sus scrofa].
Length = 240
Score = 67.0 bits (162), Expect = 2e-11
Identities = 38/129 (29%), Positives = 58/129 (44%)
Frame = +1
Query: 526 ANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAH 705
A PCP W + + CY FS W+ S C + AQL+ INST + +F++
Sbjct: 106 AGLCHPCPWHWEFFQGRCYLFSQTQSDWKSSLSACKDIGAQLVIINSTAEQKFLKSWYVR 165
Query: 706 SSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCI 885
+ W+GLS SW W D +PL ++ +G + + CA +H C
Sbjct: 166 YNKATWIGLSDDTNEGSWQWVDNSPLQLSFWK-EGEPNN-HGDEDCAELHNDGWNDSKCT 223
Query: 886 LNAFSICQK 912
+ IC+K
Sbjct: 224 VENAWICEK 232
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,503,807
Number of extensions: 823865
Number of successful extensions: 2546
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 2502
Number of HSP's successfully gapped: 37
Length of query: 414
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,829,335
Effective search space: 2763581855
Effective search space used: 2763581855
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008912
(1242 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_619589.2| oxidized low-density lipoprotein receptor 1 [Mu... 215 5e-56
Alignment gi|NP_064392.2| C-type lectin domain family 7 member A [Mus mus... 105 7e-23
Alignment gi|NP_001191152.1| C-type lectin domain family 12 member B [Mus... 100 3e-21
Alignment gi|NP_081985.1| C-type lectin domain family 12 member B [Mus mu... 100 3e-21
Alignment gi|NP_001076791.1| NKG2-D type II integral membrane protein iso... 85 1e-16
Alignment gi|NP_149069.1| NKG2-D type II integral membrane protein isofor... 85 1e-16
Alignment gi|NP_001191168.1| C-type lectin domain family 1 member B isofo... 82 7e-16
Alignment gi|NP_064369.1| C-type lectin domain family 1 member B isoform ... 82 7e-16
Alignment gi|NP_001153376.1| killer cell lectin-like receptor subfamily B... 81 1e-15
Alignment gi|NP_032553.2| killer cell lectin-like receptor subfamily B me... 81 1e-15
>ref|NP_619589.2| oxidized low-density lipoprotein receptor 1 [Mus musculus].
Length = 363
Score = 215 bits (548), Expect = 5e-56
Identities = 108/203 (53%), Positives = 133/203 (65%), Gaps = 3/203 (1%)
Frame = +1
Query: 331 KLTHQEDILE---GQALAQRQAEKSSQESQRELTEMIETLAHKLDEKSXXXXXXXXXXXX 501
K QE++L+ A ++A SS+ESQREL I+TL KL+EKS
Sbjct: 161 KSKEQEELLQMIQNLQEALQRAANSSEESQRELKGKIDTLTLKLNEKSKEQEELLQKNQN 220
Query: 502 XXXXXXXAANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLE 681
AANFSGPCPQDWLWH+ENCY F GPFSWEK+R+ C SL QLL+IN DDL
Sbjct: 221 LQEALQRAANFSGPCPQDWLWHKENCYLFH-GPFSWEKNRQTCQSLGGQLLQINGADDLT 279
Query: 682 FIQQTIAHSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRG 861
FI Q I+H++ PFW+GL +KP WLWE+GTPL F+ +G + Q+Y SG CAY+ G
Sbjct: 280 FILQAISHTTSPFWIGLHRKKPGQPWLWENGTPLNFQFFKTRGVSLQLYSSGNCAYLQDG 339
Query: 862 IVFAENCILNAFSICQKRANLLR 930
VFAENCIL AFSICQK+ N L+
Sbjct: 340 AVFAENCILIAFSICQKKTNHLQ 362
Score = 76.3 bits (186), Expect = 5e-14
Identities = 48/117 (41%), Positives = 61/117 (52%)
Frame = +1
Query: 115 MTLDDLKSNSMKDQPDEKSNGDKAEGPQSLSTWRWRPAAXXXXXXXXXXXXXXXXXXXXX 294
MT DD K D+PD+KS G K +G LS+ W PAA
Sbjct: 1 MTFDD-KMKPANDEPDQKSCGKKPKGLHLLSSPWWFPAAMTLVILCLVLSVTLIVQWTQL 59
Query: 295 XXXXXXXKQQKVKLTHQEDILEGQALAQRQAEKSSQESQRELTEMIETLAHKLDEKS 465
KQ + LT Q+ ILEGQ LAQ++AE +SQES++EL I+TL KL+EKS
Sbjct: 60 RQVSDLLKQYQANLTQQDRILEGQMLAQQKAENTSQESKKELKGKIDTLTQKLNEKS 116
>ref|NP_064392.2| C-type lectin domain family 7 member A [Mus musculus].
Length = 244
Score = 105 bits (262), Expect = 7e-23
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 1/128 (0%)
Frame = +1
Query: 532 FSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQ-QTIAHS 708
FS PC +W+ H ++CY FS SW S+ +C L A LLKI+++ + EFI+ QT +H
Sbjct: 115 FSQPCLPNWIMHGKSCYLFSFSGNSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQTSSHR 174
Query: 709 SFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCIL 888
FW+GLS + W WEDG+ P+ F+++ A Q C +IH V+ + C
Sbjct: 175 INAFWIGLSRNQSEGPWFWEDGSAFFPNSFQVRNTAPQESLLHNCVWIHGSEVYNQICNT 234
Query: 889 NAFSICQK 912
+++SIC+K
Sbjct: 235 SSYSICEK 242
>ref|NP_001191152.1| C-type lectin domain family 12 member B [Mus musculus].
Length = 275
Score = 100 bits (248), Expect = 3e-21
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 9/194 (4%)
Frame = +1
Query: 382 QAEKSSQESQRELTEMIETLAHKLDEKSXXXXXXXXXXXXXXXXXXXAANF--------S 537
Q +KS Q L+E + + L E+S F
Sbjct: 80 QLQKSIHPQQDNLSESLNSSRKSLTEESLQSQISALLERQEQMATKLCKEFLIHASDHKC 139
Query: 538 GPCPQDWLWHEENCYKFS-SGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSF 714
PCP+ W W+ +CY FS + SW SR++C+ +A L+KI+ST++ + +Q ++ +
Sbjct: 140 NPCPKTWQWYGNSCYYFSINEEKSWSDSRKDCIDKNATLVKIDSTEERDLLQSQLSLTFS 199
Query: 715 PFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNA 894
FW+GLS +WLWEDG+ P L + AS S CAY RG ++ C
Sbjct: 200 FFWLGLSWNSSGRNWLWEDGSFPPPTLLSDKELAS-FNGSRECAYFERGNIYTSRCRAEI 258
Query: 895 FSICQKRANLLRAQ 936
IC+KRA+L++ +
Sbjct: 259 PWICEKRASLVKIE 272
>ref|NP_081985.1| C-type lectin domain family 12 member B [Mus musculus].
Length = 275
Score = 100 bits (248), Expect = 3e-21
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 9/194 (4%)
Frame = +1
Query: 382 QAEKSSQESQRELTEMIETLAHKLDEKSXXXXXXXXXXXXXXXXXXXAANF--------S 537
Q +KS Q L+E + + L E+S F
Sbjct: 80 QLQKSIHPQQDNLSESLNSSRKSLTEESLQSQISALLERQEQMATKLCKEFLIHASDHKC 139
Query: 538 GPCPQDWLWHEENCYKFS-SGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSF 714
PCP+ W W+ +CY FS + SW SR++C+ +A L+KI+ST++ + +Q ++ +
Sbjct: 140 NPCPKTWQWYGNSCYYFSINEEKSWSDSRKDCIDKNATLVKIDSTEERDLLQSQLSLTFS 199
Query: 715 PFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNA 894
FW+GLS +WLWEDG+ P L + AS S CAY RG ++ C
Sbjct: 200 FFWLGLSWNSSGRNWLWEDGSFPPPTLLSDKELAS-FNGSRECAYFERGNIYTSRCRAEI 258
Query: 895 FSICQKRANLLRAQ 936
IC+KRA+L++ +
Sbjct: 259 PWICEKRASLVKIE 272
>ref|NP_001076791.1| NKG2-D type II integral membrane protein isoform b [Mus musculus].
Length = 219
Score = 85.1 bits (209), Expect = 1e-16
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Frame = +1
Query: 532 FSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSS 711
+ GPCP +W+ H NCY+F + +W +S+ +CLS ++ LLKI S ++ +F++ ++
Sbjct: 98 YCGPCPNNWICHRNNCYQFFNEEKTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSY-- 155
Query: 712 FPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCA-YIHRGIVFAENCI- 885
WMGL N SW WEDG+ L + L P G+CA Y + E+C
Sbjct: 156 --HWMGLVQIPANGSWQWEDGSSLSYNQLTL-----VEIPKGSCAVYGSSFKAYTEDCAN 208
Query: 886 LNAFSICQKRA 918
LN + IC KRA
Sbjct: 209 LNTY-ICMKRA 218
>ref|NP_149069.1| NKG2-D type II integral membrane protein isoform a [Mus musculus].
Length = 232
Score = 85.1 bits (209), Expect = 1e-16
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Frame = +1
Query: 532 FSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSS 711
+ GPCP +W+ H NCY+F + +W +S+ +CLS ++ LLKI S ++ +F++ ++
Sbjct: 111 YCGPCPNNWICHRNNCYQFFNEEKTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSY-- 168
Query: 712 FPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCA-YIHRGIVFAENCI- 885
WMGL N SW WEDG+ L + L P G+CA Y + E+C
Sbjct: 169 --HWMGLVQIPANGSWQWEDGSSLSYNQLTL-----VEIPKGSCAVYGSSFKAYTEDCAN 221
Query: 886 LNAFSICQKRA 918
LN + IC KRA
Sbjct: 222 LNTY-ICMKRA 231
>ref|NP_001191168.1| C-type lectin domain family 1 member B isoform 2 [Mus musculus].
Length = 197
Score = 82.4 bits (202), Expect = 7e-16
Identities = 39/130 (30%), Positives = 65/130 (50%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPF 720
PC W +H ++CY F +WE+S++ C +A L+K S L++I + I
Sbjct: 69 PCATKWRYHGDSCYGFFRRNLTWEESKQYCTEQNATLVKTASQSTLDYIAERITSVR--- 125
Query: 721 WMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFS 900
W+GLS + W+WED + L + L G + + CAY+H G + +C +
Sbjct: 126 WIGLSRQNSKKDWMWEDSSVLRKNGINLSGNTEE---NMNCAYLHNGKIHPASCKERHYL 182
Query: 901 ICQKRANLLR 930
IC++ A + R
Sbjct: 183 ICERNAGMTR 192
>ref|NP_064369.1| C-type lectin domain family 1 member B isoform 1 [Mus musculus].
Length = 229
Score = 82.4 bits (202), Expect = 7e-16
Identities = 39/130 (30%), Positives = 65/130 (50%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPF 720
PC W +H ++CY F +WE+S++ C +A L+K S L++I + I
Sbjct: 101 PCATKWRYHGDSCYGFFRRNLTWEESKQYCTEQNATLVKTASQSTLDYIAERITSVR--- 157
Query: 721 WMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFS 900
W+GLS + W+WED + L + L G + + CAY+H G + +C +
Sbjct: 158 WIGLSRQNSKKDWMWEDSSVLRKNGINLSGNTEE---NMNCAYLHNGKIHPASCKERHYL 214
Query: 901 ICQKRANLLR 930
IC++ A + R
Sbjct: 215 ICERNAGMTR 224
>ref|NP_001153376.1| killer cell lectin-like receptor subfamily B member 1C isoform 1
[Mus musculus].
Length = 271
Score = 81.3 bits (199), Expect = 1e-15
Identities = 41/126 (32%), Positives = 62/126 (49%)
Frame = +1
Query: 544 CPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPFW 723
CPQDWL H + C+ S +WE+ + +C A LL I ++L F+ +I FW
Sbjct: 142 CPQDWLLHRDKCFHVSQVSNTWEEGQADCGRKGATLLLIQDQEELRFLLDSIKEKYNSFW 201
Query: 724 MGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFSI 903
+GL P+ +W W +GT + ++ G +G+CA I V E+C + I
Sbjct: 202 IGLRFTLPDMNWKWINGTTFNSDVLKITGVTE----NGSCASILGDKVTPESCASDNRWI 257
Query: 904 CQKRAN 921
CQK N
Sbjct: 258 CQKELN 263
>ref|NP_032553.2| killer cell lectin-like receptor subfamily B member 1C isoform 2
[Mus musculus].
Length = 268
Score = 81.3 bits (199), Expect = 1e-15
Identities = 41/126 (32%), Positives = 62/126 (49%)
Frame = +1
Query: 544 CPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPFW 723
CPQDWL H + C+ S +WE+ + +C A LL I ++L F+ +I FW
Sbjct: 139 CPQDWLLHRDKCFHVSQVSNTWEEGQADCGRKGATLLLIQDQEELRFLLDSIKEKYNSFW 198
Query: 724 MGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFSI 903
+GL P+ +W W +GT + ++ G +G+CA I V E+C + I
Sbjct: 199 IGLRFTLPDMNWKWINGTTFNSDVLKITGVTE----NGSCASILGDKVTPESCASDNRWI 254
Query: 904 CQKRAN 921
CQK N
Sbjct: 255 CQKELN 260
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,371,629
Number of extensions: 1105449
Number of successful extensions: 3689
Number of sequences better than 1.0e-05: 89
Number of HSP's gapped: 3560
Number of HSP's successfully gapped: 91
Length of query: 414
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 310
Effective length of database: 12,493,815
Effective search space: 3873082650
Effective search space used: 3873082650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008912
(1242 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002534.1| oxidized low-density lipoprotein receptor 1 iso... 313 3e-85
Alignment gi|NP_001166104.1| oxidized low-density lipoprotein receptor 1 ... 174 1e-43
Alignment gi|NP_922941.1| C-type lectin domain family 7 member A isoform ... 111 2e-24
Alignment gi|NP_072092.2| C-type lectin domain family 7 member A isoform ... 111 2e-24
Alignment gi|NP_922938.1| C-type lectin domain family 7 member A isoform ... 111 2e-24
Alignment gi|NP_057595.2| C-type lectin domain family 1 member A [Homo sa... 96 9e-20
Alignment gi|NP_001123470.1| C-type lectin domain family 12 member B isof... 94 3e-19
Alignment gi|NP_001166103.1| oxidized low-density lipoprotein receptor 1 ... 94 3e-19
Alignment gi|NP_001177694.1| killer cell lectin-like receptor subfamily F... 89 8e-18
Alignment gi|NP_997228.1| C-type lectin domain family 9 member A [Homo sa... 86 5e-17
>ref|NP_002534.1| oxidized low-density lipoprotein receptor 1 isoform 1 [Homo
sapiens].
Length = 273
Score = 313 bits (801), Expect = 3e-85
Identities = 161/274 (58%), Positives = 187/274 (68%)
Frame = +1
Query: 115 MTLDDLKSNSMKDQPDEKSNGDKAEGPQSLSTWRWRPAAXXXXXXXXXXXXXXXXXXXXX 294
MT DDLK ++KDQPDEKSNG KA+G Q L + W AA
Sbjct: 1 MTFDDLKIQTVKDQPDEKSNGKKAKGLQFLYSPWWCLAAATLGVLCLGLVVTIMVLGMQL 60
Query: 295 XXXXXXXKQQKVKLTHQEDILEGQALAQRQAEKSSQESQRELTEMIETLAHKLDEKSXXX 474
Q++ LTHQ+ LEGQ A++QAE++SQES+ EL EMIETLA KL+EKS
Sbjct: 61 SQVSDLLTQEQANLTHQKKKLEGQISARQQAEEASQESENELKEMIETLARKLNEKSKEQ 120
Query: 475 XXXXXXXXXXXXXXXXAANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLL 654
AN S PCPQDW+WH ENCY FSSG F+WEKS+E CLSLDA+LL
Sbjct: 121 MELHHQNLNLQETLKRVANCSAPCPQDWIWHGENCYLFSSGSFNWEKSQEKCLSLDAKLL 180
Query: 655 KINSTDDLEFIQQTIAHSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPS 834
KINST DL+FIQQ I++SSFPFWMGLS R P+ WLWEDG+PLMPHLFR++GA SQ YPS
Sbjct: 181 KINSTADLDFIQQAISYSSFPFWMGLSRRNPSYPWLWEDGSPLMPHLFRVRGAVSQTYPS 240
Query: 835 GTCAYIHRGIVFAENCILNAFSICQKRANLLRAQ 936
GTCAYI RG V+AENCIL AFSICQK+AN LRAQ
Sbjct: 241 GTCAYIQRGAVYAENCILAAFSICQKKAN-LRAQ 273
>ref|NP_001166104.1| oxidized low-density lipoprotein receptor 1 isoform 3 [Homo
sapiens].
Length = 189
Score = 174 bits (442), Expect = 1e-43
Identities = 95/188 (50%), Positives = 112/188 (59%)
Frame = +1
Query: 115 MTLDDLKSNSMKDQPDEKSNGDKAEGPQSLSTWRWRPAAXXXXXXXXXXXXXXXXXXXXX 294
MT DDLK ++KDQPDEKSNG KA+G Q L + W AA
Sbjct: 1 MTFDDLKIQTVKDQPDEKSNGKKAKGLQFLYSPWWCLAAATLGVLCLGLVVTIMVLGMQL 60
Query: 295 XXXXXXXKQQKVKLTHQEDILEGQALAQRQAEKSSQESQRELTEMIETLAHKLDEKSXXX 474
Q++ LTHQ+ LEGQ A++QAE++SQES+ EL EMIETLA KL+EKS
Sbjct: 61 SQVSDLLTQEQANLTHQKKKLEGQISARQQAEEASQESENELKEMIETLARKLNEKSKEQ 120
Query: 475 XXXXXXXXXXXXXXXXAANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLL 654
AN S PCPQDW+WH ENCY FSSG F+WEKS+E CLSLDA+LL
Sbjct: 121 MELHHQNLNLQETLKRVANCSAPCPQDWIWHGENCYLFSSGSFNWEKSQEKCLSLDAKLL 180
Query: 655 KINSTDDL 678
KINST DL
Sbjct: 181 KINSTADL 188
>ref|NP_922941.1| C-type lectin domain family 7 member A isoform e [Homo sapiens].
Length = 168
Score = 111 bits (277), Expect = 2e-24
Identities = 49/131 (37%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Frame = +1
Query: 535 SGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFI-QQTIAHSS 711
S PCP +W+ +E++CY FS SW+ S+ C L + LLKI+S+++L FI +Q +
Sbjct: 38 SSPCPPNWIIYEKSCYLFSMSLNSWDGSKRQCWQLGSNLLKIDSSNELGFIVKQVSSQPD 97
Query: 712 FPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILN 891
FW+GLS + WLWEDG+ +LF+++ A+Q PS C +IH +++ + C +
Sbjct: 98 NSFWIGLSRPQTEVPWLWEDGSTFSSNLFQIRTTATQENPSPNCVWIHVSVIYDQLCSVP 157
Query: 892 AFSICQKRANL 924
++SIC+K+ ++
Sbjct: 158 SYSICEKKFSM 168
>ref|NP_072092.2| C-type lectin domain family 7 member A isoform b [Homo sapiens].
Length = 201
Score = 111 bits (277), Expect = 2e-24
Identities = 49/131 (37%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Frame = +1
Query: 535 SGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFI-QQTIAHSS 711
S PCP +W+ +E++CY FS SW+ S+ C L + LLKI+S+++L FI +Q +
Sbjct: 71 SSPCPPNWIIYEKSCYLFSMSLNSWDGSKRQCWQLGSNLLKIDSSNELGFIVKQVSSQPD 130
Query: 712 FPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILN 891
FW+GLS + WLWEDG+ +LF+++ A+Q PS C +IH +++ + C +
Sbjct: 131 NSFWIGLSRPQTEVPWLWEDGSTFSSNLFQIRTTATQENPSPNCVWIHVSVIYDQLCSVP 190
Query: 892 AFSICQKRANL 924
++SIC+K+ ++
Sbjct: 191 SYSICEKKFSM 201
>ref|NP_922938.1| C-type lectin domain family 7 member A isoform a [Homo sapiens].
Length = 247
Score = 111 bits (277), Expect = 2e-24
Identities = 49/131 (37%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Frame = +1
Query: 535 SGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFI-QQTIAHSS 711
S PCP +W+ +E++CY FS SW+ S+ C L + LLKI+S+++L FI +Q +
Sbjct: 117 SSPCPPNWIIYEKSCYLFSMSLNSWDGSKRQCWQLGSNLLKIDSSNELGFIVKQVSSQPD 176
Query: 712 FPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILN 891
FW+GLS + WLWEDG+ +LF+++ A+Q PS C +IH +++ + C +
Sbjct: 177 NSFWIGLSRPQTEVPWLWEDGSTFSSNLFQIRTTATQENPSPNCVWIHVSVIYDQLCSVP 236
Query: 892 AFSICQKRANL 924
++SIC+K+ ++
Sbjct: 237 SYSICEKKFSM 247
>ref|NP_057595.2| C-type lectin domain family 1 member A [Homo sapiens].
Length = 280
Score = 95.5 bits (236), Expect = 9e-20
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Frame = +1
Query: 526 ANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEF-IQQTIA 702
A+ PC + W WH +NCY+F SWE + CLS ++ +LKIN +DLEF Q+ +
Sbjct: 131 AHRCSPCTEQWKWHGDNCYQFYKDSKSWEDCKYFCLSENSTMLKINKQEDLEFAASQSYS 190
Query: 703 HSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENC 882
+ +W GL +WLW DGTP LF + + S C I G++F+++C
Sbjct: 191 EFFYSYWTGLLRPDSGKAWLWMDGTPFTSELFHIIIDVTSP-RSRDCVAILNGMIFSKDC 249
Query: 883 ILNAFSICQKRANLLRAQ 936
+C++RA +++ +
Sbjct: 250 KELKRCVCERRAGMVKPE 267
>ref|NP_001123470.1| C-type lectin domain family 12 member B isoform 1 [Homo sapiens].
Length = 276
Score = 93.6 bits (231), Expect = 3e-19
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Frame = +1
Query: 541 PCPQDWLWHEENCYKFSSGPF-SWEKSRENCLSLDAQLLKINSTDDLEFIQ-QTIAHSSF 714
PCP+ W W++ +CY F++ +W SR++C+ ++ L+KI+S ++ +F+ Q + SF
Sbjct: 142 PCPKMWQWYQNSCYYFTTNEEKTWANSRKDCIDKNSTLVKIDSLEEKDFLMSQPLLMFSF 201
Query: 715 PFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNA 894
FW+GLS SW WEDG+ P LF + Q+ S CAY +G ++ C
Sbjct: 202 -FWLGLSWDSSGRSWFWEDGSVPSPSLFSTK-ELDQINGSKGCAYFQKGNIYISRCSAEI 259
Query: 895 FSICQKRA 918
F IC+K A
Sbjct: 260 FWICEKTA 267
>ref|NP_001166103.1| oxidized low-density lipoprotein receptor 1 isoform 2 [Homo
sapiens].
Length = 181
Score = 93.6 bits (231), Expect = 3e-19
Identities = 55/117 (47%), Positives = 68/117 (58%)
Frame = +1
Query: 115 MTLDDLKSNSMKDQPDEKSNGDKAEGPQSLSTWRWRPAAXXXXXXXXXXXXXXXXXXXXX 294
MT DDLK ++KDQPDEKSNG KA+G Q L + W AA
Sbjct: 1 MTFDDLKIQTVKDQPDEKSNGKKAKGLQFLYSPWWCLAAATLGVLCLGLVVTIMVLGMQL 60
Query: 295 XXXXXXXKQQKVKLTHQEDILEGQALAQRQAEKSSQESQRELTEMIETLAHKLDEKS 465
Q++ LTHQ+ LEGQ A++QAE++SQES+ EL EMIETLA KL+EKS
Sbjct: 61 SQVSDLLTQEQANLTHQKKKLEGQISARQQAEEASQESENELKEMIETLARKLNEKS 117
Score = 60.8 bits (146), Expect = 2e-09
Identities = 28/41 (68%), Positives = 34/41 (82%)
Frame = +3
Query: 675 SGIHPANHRPFQFPILDGVISEETQQLMALGGRYSFDAPLV 797
SG+HPA++ FQF ILDG +SEE Q MALGGR+SFDAPL+
Sbjct: 141 SGLHPASNFLFQFSILDGAVSEEPQLPMALGGRFSFDAPLI 181
>ref|NP_001177694.1| killer cell lectin-like receptor subfamily F member 2 [Homo
sapiens].
Length = 207
Score = 89.0 bits (219), Expect = 8e-18
Identities = 48/127 (37%), Positives = 69/127 (54%)
Frame = +1
Query: 544 CPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTIAHSSFPFW 723
CP DWL +E CY FS+ +W++S+ +C L A LL I + D+LEFIQ ++ F W
Sbjct: 78 CPNDWLLNEGKCYWFSTSFKTWKESQRDCTQLQAHLLVIQNLDELEFIQNSLKPGHFG-W 136
Query: 724 MGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAENCILNAFSI 903
+GL + N W+W D L+P LF + G +CA I V++E+C I
Sbjct: 137 IGLYVTFQGNLWMWIDEHFLVPELFSVIGPTDDR----SCAVITGNWVYSEDCSSTFKGI 192
Query: 904 CQKRANL 924
CQ+ A L
Sbjct: 193 CQRDAIL 199
>ref|NP_997228.1| C-type lectin domain family 9 member A [Homo sapiens].
Length = 241
Score = 86.3 bits (212), Expect = 5e-17
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Frame = +1
Query: 523 AANFSGPCPQDWLWHEENCYKFSSGPFSWEKSRENCLSLDAQLLKINSTDDLEFIQQTI- 699
+A+ S PCP +W+ + E+CY S W S+ENCL + LL+I S ++++FI ++
Sbjct: 106 SAHNSSPCPNNWIQNRESCYYVSEIWSIWHTSQENCLKEGSTLLQIESKEEMDFITGSLR 165
Query: 700 -AHSSFPFWMGLSLRKPNNSWLWEDGTPLMPHLFRLQGAASQMYPSGTCAYIHRGIVFAE 876
S+ +W+GLS + WLW+DG+ P L + + S + C Y+ + +
Sbjct: 166 KIKGSYDYWVGLSQDGHSGRWLWQDGSSPSPGLLPAERSQS---ANQVCGYVKSNSLLSS 222
Query: 877 NCILNAFSICQKRA 918
NC + IC+K A
Sbjct: 223 NCSTWKYFICEKYA 236
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,627,024
Number of extensions: 1309590
Number of successful extensions: 4290
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 4203
Number of HSP's successfully gapped: 87
Length of query: 414
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 309
Effective length of database: 14,835,944
Effective search space: 4584306696
Effective search space used: 4584306696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008912
(1242 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 858 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 858 bits (433), Expect = 0.0
Identities = 447/449 (99%), Gaps = 2/449 (0%)
Strand = Plus / Minus
Query: 795 gtttagactccagggagctgcttcccaaatgtatccttcaggcacctgtgcgtatataca 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64580929 gtttagactccagggagctgcttcccaaatgtatccttcaggcacctgtgcgtatataca 64580870
Query: 855 caggggaattgtttttgctgaaaactgcattttaaatgcattcagtatatgtcagaagag 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64580869 caggggaattgtttttgctgaaaactgcattttaaatgcattcagtatatgtcagaagag 64580810
Query: 915 ggcgaatctcttgagagcacagtgaatttgaaagctttggaagaaaaggagaagatcttt 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64580809 ggcgaatctcttgagagcacagtgaatttgaaagctttggaagaaaaggagaagatcttt 64580750
Query: 975 ggattcttttctggaatttaagctatacttggtcacttaagtgcaaaccatgaaagccct 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64580749 ggattcttttctggaatttaagctatacttggtcacttaagtgcaaaccatgaaagccct 64580690
Query: 1035 gacaactgcctgttgctctatgagtgcagaactccttagcagagactgggcctcagctac 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64580689 gacaactgcctgttgctctatgagtgcagaactccttagcagagactgggcctcagctac 64580630
Query: 1095 ctgacagcttggttatcaatagttttaattctatccctttctctctgtgttccctagcgt 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64580629 ctgacagcttggttatcaatagttttaattctatccctttctctctgtgttccctagcgt 64580570
Query: 1155 gtcccaagcccccctgcctgccatcagttaagtccctttcctgttttcta-tatttctaa 1213
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 64580569 gtcccaagcccccctgcctgccatcagttaagtccctttcctg-tttctattatttctaa 64580511
Query: 1214 gaacttgttgcttaatgcaaggtcgtaaa 1242
|||||||||||||||||||||||||||||
Sbjct: 64580510 gaacttgttgcttaatgcaaggtcgtaaa 64580482
Score = 492 bits (248), Expect = e-136
Identities = 248/248 (100%)
Strand = Plus / Minus
Query: 293 tgtcccaggtgtctgatctcctgaagcaacagaaagtgaaacttactcaccaggaagaca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64586540 tgtcccaggtgtctgatctcctgaagcaacagaaagtgaaacttactcaccaggaagaca 64586481
Query: 353 tcctggagggacaggctttagcccagcgccaggcggaaaaatcttcccaggagtcacaaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64586480 tcctggagggacaggctttagcccagcgccaggcggaaaaatcttcccaggagtcacaaa 64586421
Query: 413 gggaactcacagaaatgatagaaactcttgcccacaaattggatgaaaaatccaagaaac 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64586420 gggaactcacagaaatgatagaaactcttgcccacaaattggatgaaaaatccaagaaac 64586361
Query: 473 tgatggagcttcaacagcagaacttgaatcttcaaaaagctctggagaaagcggcaaact 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64586360 tgatggagcttcaacagcagaacttgaatcttcaaaaagctctggagaaagcggcaaact 64586301
Query: 533 tttcaggt 540
||||||||
Sbjct: 64586300 tttcaggt 64586293
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 1 agtcattccattagatagcagcagctatttaaacgctccagtgggagctcagacatttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64590512 agtcattccattagatagcagcagctatttaaacgctccagtgggagctcagacatttct 64590453
Query: 61 gcttgtagaagtccttggctgctccactccctcattcttggaataaattcagaaatgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64590452 gcttgtagaagtccttggctgctccactccctcattcttggaataaattcagaaatgaca 64590393
Query: 121 cttgatgacctcaagagcaacagtatgaaggatcaacctgacgagaaatcaaatggagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64590392 cttgatgacctcaagagcaacagtatgaaggatcaacctgacgagaaatcaaatggagat 64590333
Query: 181 aaagctgaaggt 192
||||||||||||
Sbjct: 64590332 aaagctgaaggt 64590321
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 537 aggtccttgtccccaagactggctctggcatgaagaaaactgttacaaattttcctctgg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64581760 aggtccttgtccccaagactggctctggcatgaagaaaactgttacaaattttcctctgg 64581701
Query: 597 cccatttagttgggaaaaaagccgggagaactgcttgtctttggatgcccaactgctgaa 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64581700 cccatttagttgggaaaaaagccgggagaactgcttgtctttggatgcccaactgctgaa 64581641
Query: 657 gattaatagcacagacgatctgg 679
|||||||||||||||||||||||
Sbjct: 64581640 gattaatagcacagacgatctgg 64581618
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 678 ggaattcatccagcaaaccatcgcccattccagtttcccattctggatggggttatctct 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64581310 ggaattcatccagcaaaccatcgcccattccagtttcccattctggatggggttatctct 64581251
Query: 738 gaggaaacccaacaactcatggctctgggaggacggtactcctttgatgccccacttgt 796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64581250 gaggaaacccaacaactcatggctctgggaggacggtactcctttgatgccccacttgt 64581192
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 189 aggtcctcagagtctttccacttggcggtggcgccctgctgccctgattctagggttact 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64588676 aggtcctcagagtctttccacttggcggtggcgccctgctgccctgattctagggttact 64588617
Query: 249 gtgcctgggattactggtgaccgttatactgctgataatacagt 292
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64588616 gtgcctgggattactggtgaccgttatactgctgataatacagt 64588573
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,213,192
Number of extensions: 563
Number of successful extensions: 563
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 6
Length of query: 1242
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1221
Effective length of database: 2,808,413,156
Effective search space: 3429072463476
Effective search space used: 3429072463476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)