Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008931
(809 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033768.1| 39S ribosomal protein L32, mitochondrial pre... 333 1e-91
>ref|NP_001033768.1| 39S ribosomal protein L32, mitochondrial precursor [Bos taurus].
Length = 188
Score = 333 bits (853), Expect = 1e-91
Identities = 158/188 (84%), Positives = 168/188 (89%)
Frame = +3
Query: 27 MAPAMLVLVVPPWPAARGLLRNWWEQLQRKLQHNRLGLPLHPWGPALAVQGPAICTEPAN 206
MAP MLVL+VPP+P ARGLLRN W+QLQ KL +R G PWGPALAVQGPAI +EP N
Sbjct: 1 MAPTMLVLLVPPFPVARGLLRNCWKQLQGKLLQSRPGFSSPPWGPALAVQGPAIFSEPTN 60
Query: 207 DTNGSKAISSLLDSVFWMAAPKNRRSIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKQKH 386
DT+GS SSLLDS+FWMAAPKNRRSIEVNRCRRRNP KLIKVKNNID CPECGHLKQKH
Sbjct: 61 DTSGSTETSSLLDSIFWMAAPKNRRSIEVNRCRRRNPHKLIKVKNNIDFCPECGHLKQKH 120
Query: 387 ILCGYCYEKVRKETAEIRRQMGKQEGGPFRAPTTETVVLYSGETPSEQDQGKRIIERERK 566
+LCGYCYEKVRKETAEIRRQ+GKQEGGPF+APT ETVVLYSGETPSE DQGKRIIERERK
Sbjct: 121 VLCGYCYEKVRKETAEIRRQIGKQEGGPFKAPTVETVVLYSGETPSEHDQGKRIIERERK 180
Query: 567 RPSWFTQN 590
RPSWFTQN
Sbjct: 181 RPSWFTQN 188
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,591,359
Number of extensions: 854070
Number of successful extensions: 3655
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3642
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 169
Effective length of database: 14,372,574
Effective search space: 2428965006
Effective search space used: 2428965006
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008931
(809 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533077.1| PREDICTED: similar to mitochondrial ribosomal p... 329 2e-90
>ref|XP_533077.1| PREDICTED: similar to mitochondrial ribosomal protein L32 [Canis
familiaris].
Length = 188
Score = 329 bits (844), Expect = 2e-90
Identities = 158/188 (84%), Positives = 169/188 (89%)
Frame = +3
Query: 27 MAPAMLVLVVPPWPAARGLLRNWWEQLQRKLQHNRLGLPLHPWGPALAVQGPAICTEPAN 206
MA MLVLVVP WPAARGLLRN WE L R LQ +R GLP PWGPALAVQGPA+ TEPA+
Sbjct: 1 MASPMLVLVVPRWPAARGLLRNGWELLLRTLQQSRPGLPGPPWGPALAVQGPAVFTEPAH 60
Query: 207 DTNGSKAISSLLDSVFWMAAPKNRRSIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKQKH 386
DT+GSK ISSLLDS+FWMAAPKNRRSIEVNRCRRRNPQKLIKVKNNIDVCPECGHLK KH
Sbjct: 61 DTSGSKEISSLLDSIFWMAAPKNRRSIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKLKH 120
Query: 387 ILCGYCYEKVRKETAEIRRQMGKQEGGPFRAPTTETVVLYSGETPSEQDQGKRIIERERK 566
+LCG+CYEKV KETAEIRRQ+GKQEGGPF+AP ETVVLY+GE PS QDQGKRIIER+RK
Sbjct: 121 VLCGFCYEKVCKETAEIRRQIGKQEGGPFKAPPVETVVLYTGEAPSIQDQGKRIIERDRK 180
Query: 567 RPSWFTQN 590
RPSWFTQN
Sbjct: 181 RPSWFTQN 188
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,811,529
Number of extensions: 869108
Number of successful extensions: 3552
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3548
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 168
Effective length of database: 15,507,568
Effective search space: 2605271424
Effective search space used: 2605271424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008931
(809 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360256.1| PREDICTED: 39S ribosomal protein L32, mitoch... 395 e-110
Alignment gi|XP_003356972.1| PREDICTED: 39S ribosomal protein L32, mitoch... 201 5e-52
>ref|XP_003360256.1| PREDICTED: 39S ribosomal protein L32, mitochondrial [Sus scrofa].
Length = 188
Score = 395 bits (1014), Expect = e-110
Identities = 187/188 (99%), Positives = 187/188 (99%)
Frame = +3
Query: 27 MAPAMLVLVVPPWPAARGLLRNWWEQLQRKLQHNRLGLPLHPWGPALAVQGPAICTEPAN 206
MA AMLVLVVPPWPAARGLLRNWWEQLQRKLQHNRLGLPLHPWGPALAVQGPAICTEPAN
Sbjct: 1 MASAMLVLVVPPWPAARGLLRNWWEQLQRKLQHNRLGLPLHPWGPALAVQGPAICTEPAN 60
Query: 207 DTNGSKAISSLLDSVFWMAAPKNRRSIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKQKH 386
DTNGSKAISSLLDSVFWMAAPKNRRSIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKQKH
Sbjct: 61 DTNGSKAISSLLDSVFWMAAPKNRRSIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKQKH 120
Query: 387 ILCGYCYEKVRKETAEIRRQMGKQEGGPFRAPTTETVVLYSGETPSEQDQGKRIIERERK 566
ILCGYCYEKVRKETAEIRRQMGKQEGGPFRAPTTETVVLYSGETPSEQDQGKRIIERERK
Sbjct: 121 ILCGYCYEKVRKETAEIRRQMGKQEGGPFRAPTTETVVLYSGETPSEQDQGKRIIERERK 180
Query: 567 RPSWFTQN 590
RPSWFTQN
Sbjct: 181 RPSWFTQN 188
>ref|XP_003356972.1| PREDICTED: 39S ribosomal protein L32, mitochondrial-like [Sus
scrofa].
Length = 156
Score = 201 bits (510), Expect = 5e-52
Identities = 94/106 (88%), Positives = 100/106 (94%)
Frame = +3
Query: 27 MAPAMLVLVVPPWPAARGLLRNWWEQLQRKLQHNRLGLPLHPWGPALAVQGPAICTEPAN 206
MAPA L+LVV PWPAARGLLRNWWEQLQRKLQHNRLGLP+HPWGPALAVQGPAI TEPA
Sbjct: 1 MAPATLLLVVLPWPAARGLLRNWWEQLQRKLQHNRLGLPIHPWGPALAVQGPAIFTEPAK 60
Query: 207 DTNGSKAISSLLDSVFWMAAPKNRRSIEVNRCRRRNPQKLIKVKNN 344
DTNG++ ISSLLDS+FWMAAP+NR SIEVNRCRRRNPQKLIKVKNN
Sbjct: 61 DTNGNEEISSLLDSIFWMAAPQNRCSIEVNRCRRRNPQKLIKVKNN 106
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,672,855
Number of extensions: 546304
Number of successful extensions: 2292
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2284
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 172
Effective length of database: 8,928,923
Effective search space: 1535774756
Effective search space used: 1535774756
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008931
(809 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083547.1| 39S ribosomal protein L32, mitochondrial precur... 279 2e-75
>ref|NP_083547.1| 39S ribosomal protein L32, mitochondrial precursor [Mus musculus].
Length = 187
Score = 279 bits (714), Expect = 2e-75
Identities = 132/188 (70%), Positives = 156/188 (82%)
Frame = +3
Query: 27 MAPAMLVLVVPPWPAARGLLRNWWEQLQRKLQHNRLGLPLHPWGPALAVQGPAICTEPAN 206
MAP++L+L +P WP G L+ WE LQR+LQ + PW PALAVQ P+I TE A+
Sbjct: 1 MAPSLLLLSLP-WPVRPGPLQRCWELLQRQLQQSWSRFVSPPWAPALAVQRPSILTELAH 59
Query: 207 DTNGSKAISSLLDSVFWMAAPKNRRSIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKQKH 386
DT +K SS LDS+FWMAAPKNRR+IEVNRCRRRNPQKLIK+KNNID+CPECGHLKQKH
Sbjct: 60 DTCENKENSSFLDSIFWMAAPKNRRTIEVNRCRRRNPQKLIKIKNNIDICPECGHLKQKH 119
Query: 387 ILCGYCYEKVRKETAEIRRQMGKQEGGPFRAPTTETVVLYSGETPSEQDQGKRIIERERK 566
+LCGYCYEKVR+ET +IR+Q+G QEGGPFRAP+ ET+VLY+GE PSE+DQGKRI+ER K
Sbjct: 120 VLCGYCYEKVRQETTKIRQQIGAQEGGPFRAPSVETMVLYTGEKPSEKDQGKRIVERNIK 179
Query: 567 RPSWFTQN 590
RPSWFTQN
Sbjct: 180 RPSWFTQN 187
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,624,698
Number of extensions: 726201
Number of successful extensions: 2824
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2816
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 169
Effective length of database: 12,613,959
Effective search space: 2131759071
Effective search space used: 2131759071
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008931
(809 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_114109.1| 39S ribosomal protein L32, mitochondrial precur... 335 4e-92
>ref|NP_114109.1| 39S ribosomal protein L32, mitochondrial precursor [Homo sapiens].
Length = 188
Score = 335 bits (858), Expect = 4e-92
Identities = 159/188 (84%), Positives = 172/188 (91%)
Frame = +3
Query: 27 MAPAMLVLVVPPWPAARGLLRNWWEQLQRKLQHNRLGLPLHPWGPALAVQGPAICTEPAN 206
MA AMLVLVV PW AARG+LRN+WE+L RKL +R G P PWGPALAVQGPA+ TEPAN
Sbjct: 1 MALAMLVLVVSPWSAARGVLRNYWERLLRKLPQSRPGFPSPPWGPALAVQGPAMFTEPAN 60
Query: 207 DTNGSKAISSLLDSVFWMAAPKNRRSIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKQKH 386
DT+GSK SSLLDS+FWMAAPKNRR+IEVNRCRRRNPQKLIKVKNNIDVCPECGHLKQKH
Sbjct: 61 DTSGSKENSSLLDSIFWMAAPKNRRTIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKQKH 120
Query: 387 ILCGYCYEKVRKETAEIRRQMGKQEGGPFRAPTTETVVLYSGETPSEQDQGKRIIERERK 566
+LC YCYEKV KETAEIRRQ+GKQEGGPF+APT ETVVLY+GETPSEQDQGKRIIER+RK
Sbjct: 121 VLCAYCYEKVCKETAEIRRQIGKQEGGPFKAPTIETVVLYTGETPSEQDQGKRIIERDRK 180
Query: 567 RPSWFTQN 590
RPSWFTQN
Sbjct: 181 RPSWFTQN 188
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,285,663
Number of extensions: 864149
Number of successful extensions: 3432
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3422
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 168
Effective length of database: 14,967,800
Effective search space: 2514590400
Effective search space used: 2514590400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008931
(809 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 848 0.0
Sscrofa_Chr08 472 e-130
>Sscrofa_Chr18
|| Length = 61220071
Score = 848 bits (428), Expect = 0.0
Identities = 461/476 (96%)
Strand = Plus / Minus
Query: 334 ttaagaacaatatagatgtttgtcctgaatgtggacacctgaaacagaaacacatcctct 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56853117 ttaagaacaatatagatgtttgtcctgaatgtggacacctgaaacagaaacacatcctct 56853058
Query: 394 gtggctattgctatgagaaggtgcgcaaggagacagcggaaatcagacgacagatgggga 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56853057 gtggctattgctatgagaaggtgcgcaaggagacagcggaaatcagacgacagatgggga 56852998
Query: 454 agcaggaagggggccctttcagggctcctaccacggagaccgtggtgctgtactcggggg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 56852997 agcaggaagggggccctttcagggctcctaccacggagaccgtggtgctgtactcagggg 56852938
Query: 514 agacaccctcagagcaggatcagggcaagaggatcattgagcgagagcggaagcggccgt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56852937 agacaccctcagagcaggatcagggcaagaggatcattgagcgagagcggaagcggccgt 56852878
Query: 574 cctggtttacccagaactgacaccagccatgtttcaagaggataacgtcacataagacat 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56852877 cctggtttacccagaactgacaccagccatgtttcaagaggataacgtcacataagacat 56852818
Query: 634 tgctcccgnnnnnnnnnnngaaagattctttgttggttatgcggttttcttggctattct 693
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 56852817 tgctcccgaaaaaaaaaaagaaagattctttgttggttatgcggttttcttggctattct 56852758
Query: 694 tcatttttatgcttgtttttaaatcatcaatatagttgaaaacattctttattagcaggt 753
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 56852757 tcatttttatgcttgtttttaaatcatcaatatagttgaaaacattctttataagcaggt 56852698
Query: 754 cgtcttttgtgcggaatttgaagcttatatcangagtaatgtttgcaggtattgat 809
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 56852697 cgtcttttgtggggaatttgaagcttatatcaggagtaatgtttgcaggtattgat 56852642
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 156 ggaccagcattggcagtccaaggtccagctatatgtacagaaccagcaaatgataccaac 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56855750 ggaccagcattggcagtccaaggtccagctatatgtacagaaccagcaaatgataccaac 56855691
Query: 216 ggaagcaaggcgatttccagccttttggatagtgtcttttggatggcagctcccaaaaac 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56855690 ggaagcaaggcgatttccagccttttggatagtgtcttttggatggcagctcccaaaaac 56855631
Query: 276 agacgtagcattgaagttaaccggtgtagaagaagaaaccctcagaagcttattaaagtt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56855630 agacgtagcattgaagttaaccggtgtagaagaagaaaccctcagaagcttattaaagtt 56855571
Query: 336 aag 338
|||
Sbjct: 56855570 aag 56855568
Score = 295 bits (149), Expect = 2e-77
Identities = 155/157 (98%)
Strand = Plus / Minus
Query: 1 atgggcgtgttttttgggcgagcaacatggcgcccgccatgctggtgctggtggttccgc 60
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 56857561 atgggcgtggtttttgggcgagcaacatggcgtccgccatgctggtgctggtggttccgc 56857502
Query: 61 cgtggcccgcagcccggggacttctccggaattggtgggaacaactgcaacggaagcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56857501 cgtggcccgcagcccggggacttctccggaattggtgggaacaactgcaacggaagcttc 56857442
Query: 121 agcacaaccggctaggccttccccttcatccttgggg 157
|||||||||||||||||||||||||||||||||||||
Sbjct: 56857441 agcacaaccggctaggccttccccttcatccttgggg 56857405
>Sscrofa_Chr08
|| Length = 148491826
Score = 472 bits (238), Expect = e-130
Identities = 310/334 (92%)
Strand = Plus / Minus
Query: 12 ttttgggcgagcaacatggcgcccgccatgctggtgctggtggttccgccgtggcccgca 71
||||||| |||||||||||||||||||| |||| |||||||||||| ||| ||||| |||
Sbjct: 44259005 ttttgggtgagcaacatggcgcccgccacgctgttgctggtggttctgccatggcctgca 44258946
Query: 72 gcccggggacttctccggaattggtgggaacaactgcaacggaagcttcagcacaaccgg 131
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 44258945 gcccgaggacttctccgtaattggtgggaacaactgcagaggaagcttcagcacaacagg 44258886
Query: 132 ctaggccttccccttcatccttggggaccagcattggcagtccaaggtccagctatatgt 191
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 44258885 ctaggtcttcccattcatccttggggaccagcattggcagtccaaggtccagctatattt 44258826
Query: 192 acagaaccagcaaatgataccaacggaagcaaggcgatttccagccttttggatagtgtc 251
|||||||||||||| ||||| || |||| | ||| |||||||||||||||||| ||| ||
Sbjct: 44258825 acagaaccagcaaaagatactaatggaaacgaggagatttccagccttttggacagtatc 44258766
Query: 252 ttttggatggcagctcccaaaaacagacgtagcattgaagttaaccggtgtagaagaaga 311
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 44258765 ttttggatggcagctccccaaaacagatgtagcattgaagttaaccggtgtagaagaaga 44258706
Query: 312 aaccctcagaagcttattaaagttaagaacaata 345
||||||||||||||||||||||||||||||||||
Sbjct: 44258705 aaccctcagaagcttattaaagttaagaacaata 44258672
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,928,437
Number of extensions: 146
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 5
Length of query: 809
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 788
Effective length of database: 2,808,413,156
Effective search space: 2213029566928
Effective search space used: 2213029566928
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)