Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008939
(1105 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068722.1| bifunctional purine biosynthesis protein PUR... 580 e-170
>ref|NP_001068722.1| bifunctional purine biosynthesis protein PURH [Bos taurus].
Length = 592
Score = 580 bits (1495), Expect(2) = e-170
Identities = 294/312 (94%), Positives = 304/312 (97%)
Frame = +1
Query: 124 GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 303
GQLALFSVSDK GLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG
Sbjct: 4 GQLALFSVSDKNGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 63
Query: 304 RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ 483
RVKTLHPAVHAGILAR+IPEDSADMA+LDF+LIRVVVCNLYPF KTVASP VT+EEAVE
Sbjct: 64 RVKTLHPAVHAGILARDIPEDSADMAKLDFNLIRVVVCNLYPFGKTVASPGVTVEEAVEH 123
Query: 484 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA 663
IDIGGVTLLRAAAKNHARVTVVCEPEDYAAV+SEMQ SD+KDTSLETRRQLALKAFTHTA
Sbjct: 124 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVASEMQDSDSKDTSLETRRQLALKAFTHTA 183
Query: 664 QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 843
QYDEAISDYFRKEY KG+SQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA
Sbjct: 184 QYDEAISDYFRKEYSKGVSQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 243
Query: 844 LNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMVHDLYKTLTPVSTAY 1023
LNAWQLVKELKEALG+ AAASFKHVSPAGAAVGIPLSEDEA VCMV+DLYKTLTPV+TAY
Sbjct: 244 LNAWQLVKELKEALGLPAAASFKHVSPAGAAVGIPLSEDEANVCMVYDLYKTLTPVATAY 303
Query: 1024 ARARGADRMSSF 1059
ARARGADRMSSF
Sbjct: 304 ARARGADRMSSF 315
Score = 37.4 bits (85), Expect(2) = e-170
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1058 FGDFVALSDVCDVPTA 1105
FGDFVALSDVCDVPTA
Sbjct: 315 FGDFVALSDVCDVPTA 330
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,945,642
Number of extensions: 1108621
Number of successful extensions: 4001
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3988
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008939
(1105 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863125.1| PREDICTED: similar to 5-aminoimidazole-4-carbox... 580 e-170
Alignment gi|XP_863050.1| PREDICTED: similar to 5-aminoimidazole-4-carbox... 580 e-170
Alignment gi|XP_863149.1| PREDICTED: similar to 5-aminoimidazole-4-carbox... 580 e-170
Alignment gi|XP_863104.1| PREDICTED: similar to 5-aminoimidazole-4-carbox... 580 e-170
Alignment gi|XP_545634.2| PREDICTED: similar to 5-aminoimidazole-4-carbox... 580 e-170
Alignment gi|XP_855434.1| PREDICTED: similar to 5-aminoimidazole-4-carbox... 255 4e-71
>ref|XP_863125.1| PREDICTED: similar to 5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase/IMP cyclohydrolase isoform 6 [Canis
familiaris].
Length = 612
Score = 580 bits (1496), Expect(2) = e-170
Identities = 293/312 (93%), Positives = 305/312 (97%)
Frame = +1
Query: 124 GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 303
GQLALFSVSDKTGLVEFAR+L SVGL+L+ASGGTA ALRDAGLAVRDVSELTGFPEMLGG
Sbjct: 4 GQLALFSVSDKTGLVEFARSLTSVGLSLLASGGTATALRDAGLAVRDVSELTGFPEMLGG 63
Query: 304 RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ 483
RVKTLHPAVHAGILARNIPED+ADMARLDFSLIRVVVCNLYPFVKTVASPDVT+E+AVEQ
Sbjct: 64 RVKTLHPAVHAGILARNIPEDNADMARLDFSLIRVVVCNLYPFVKTVASPDVTVEQAVEQ 123
Query: 484 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA 663
IDIGGVTLLRAAAKNHARVTVVCEPEDY AVS+EMQ SD+KDTSLETRRQLALKAFTHTA
Sbjct: 124 IDIGGVTLLRAAAKNHARVTVVCEPEDYVAVSTEMQSSDSKDTSLETRRQLALKAFTHTA 183
Query: 664 QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 843
QYDEAISDYFR++Y KGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA
Sbjct: 184 QYDEAISDYFRRQYSKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 243
Query: 844 LNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMVHDLYKTLTPVSTAY 1023
LNAWQLVKELKEAL I AAASFKHVSPAGAAVGIPLSEDEAKVCMV+DLYKTLTP+STAY
Sbjct: 244 LNAWQLVKELKEALDIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISTAY 303
Query: 1024 ARARGADRMSSF 1059
ARARGADRMSSF
Sbjct: 304 ARARGADRMSSF 315
Score = 36.6 bits (83), Expect(2) = e-170
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +2
Query: 1058 FGDFVALSDVCDVPTA 1105
FGDF+ALSD+CDVPTA
Sbjct: 315 FGDFIALSDICDVPTA 330
>ref|XP_863050.1| PREDICTED: similar to 5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase/IMP cyclohydrolase isoform 4 [Canis
familiaris].
Length = 598
Score = 580 bits (1496), Expect(2) = e-170
Identities = 293/312 (93%), Positives = 305/312 (97%)
Frame = +1
Query: 124 GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 303
GQLALFSVSDKTGLVEFAR+L SVGL+L+ASGGTA ALRDAGLAVRDVSELTGFPEMLGG
Sbjct: 4 GQLALFSVSDKTGLVEFARSLTSVGLSLLASGGTATALRDAGLAVRDVSELTGFPEMLGG 63
Query: 304 RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ 483
RVKTLHPAVHAGILARNIPED+ADMARLDFSLIRVVVCNLYPFVKTVASPDVT+E+AVEQ
Sbjct: 64 RVKTLHPAVHAGILARNIPEDNADMARLDFSLIRVVVCNLYPFVKTVASPDVTVEQAVEQ 123
Query: 484 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA 663
IDIGGVTLLRAAAKNHARVTVVCEPEDY AVS+EMQ SD+KDTSLETRRQLALKAFTHTA
Sbjct: 124 IDIGGVTLLRAAAKNHARVTVVCEPEDYVAVSTEMQSSDSKDTSLETRRQLALKAFTHTA 183
Query: 664 QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 843
QYDEAISDYFR++Y KGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA
Sbjct: 184 QYDEAISDYFRRQYSKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 243
Query: 844 LNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMVHDLYKTLTPVSTAY 1023
LNAWQLVKELKEAL I AAASFKHVSPAGAAVGIPLSEDEAKVCMV+DLYKTLTP+STAY
Sbjct: 244 LNAWQLVKELKEALDIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISTAY 303
Query: 1024 ARARGADRMSSF 1059
ARARGADRMSSF
Sbjct: 304 ARARGADRMSSF 315
Score = 36.6 bits (83), Expect(2) = e-170
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +2
Query: 1058 FGDFVALSDVCDVPTA 1105
FGDF+ALSD+CDVPTA
Sbjct: 315 FGDFIALSDICDVPTA 330
>ref|XP_863149.1| PREDICTED: similar to 5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase/IMP cyclohydrolase isoform 7 [Canis
familiaris].
Length = 595
Score = 580 bits (1496), Expect(2) = e-170
Identities = 293/312 (93%), Positives = 305/312 (97%)
Frame = +1
Query: 124 GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 303
GQLALFSVSDKTGLVEFAR+L SVGL+L+ASGGTA ALRDAGLAVRDVSELTGFPEMLGG
Sbjct: 4 GQLALFSVSDKTGLVEFARSLTSVGLSLLASGGTATALRDAGLAVRDVSELTGFPEMLGG 63
Query: 304 RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ 483
RVKTLHPAVHAGILARNIPED+ADMARLDFSLIRVVVCNLYPFVKTVASPDVT+E+AVEQ
Sbjct: 64 RVKTLHPAVHAGILARNIPEDNADMARLDFSLIRVVVCNLYPFVKTVASPDVTVEQAVEQ 123
Query: 484 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA 663
IDIGGVTLLRAAAKNHARVTVVCEPEDY AVS+EMQ SD+KDTSLETRRQLALKAFTHTA
Sbjct: 124 IDIGGVTLLRAAAKNHARVTVVCEPEDYVAVSTEMQSSDSKDTSLETRRQLALKAFTHTA 183
Query: 664 QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 843
QYDEAISDYFR++Y KGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA
Sbjct: 184 QYDEAISDYFRRQYSKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 243
Query: 844 LNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMVHDLYKTLTPVSTAY 1023
LNAWQLVKELKEAL I AAASFKHVSPAGAAVGIPLSEDEAKVCMV+DLYKTLTP+STAY
Sbjct: 244 LNAWQLVKELKEALDIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISTAY 303
Query: 1024 ARARGADRMSSF 1059
ARARGADRMSSF
Sbjct: 304 ARARGADRMSSF 315
Score = 36.6 bits (83), Expect(2) = e-170
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +2
Query: 1058 FGDFVALSDVCDVPTA 1105
FGDF+ALSD+CDVPTA
Sbjct: 315 FGDFIALSDICDVPTA 330
>ref|XP_863104.1| PREDICTED: similar to 5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase/IMP cyclohydrolase isoform 5 [Canis
familiaris].
Length = 595
Score = 580 bits (1496), Expect(2) = e-170
Identities = 293/312 (93%), Positives = 305/312 (97%)
Frame = +1
Query: 124 GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 303
GQLALFSVSDKTGLVEFAR+L SVGL+L+ASGGTA ALRDAGLAVRDVSELTGFPEMLGG
Sbjct: 4 GQLALFSVSDKTGLVEFARSLTSVGLSLLASGGTATALRDAGLAVRDVSELTGFPEMLGG 63
Query: 304 RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ 483
RVKTLHPAVHAGILARNIPED+ADMARLDFSLIRVVVCNLYPFVKTVASPDVT+E+AVEQ
Sbjct: 64 RVKTLHPAVHAGILARNIPEDNADMARLDFSLIRVVVCNLYPFVKTVASPDVTVEQAVEQ 123
Query: 484 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA 663
IDIGGVTLLRAAAKNHARVTVVCEPEDY AVS+EMQ SD+KDTSLETRRQLALKAFTHTA
Sbjct: 124 IDIGGVTLLRAAAKNHARVTVVCEPEDYVAVSTEMQSSDSKDTSLETRRQLALKAFTHTA 183
Query: 664 QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 843
QYDEAISDYFR++Y KGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA
Sbjct: 184 QYDEAISDYFRRQYSKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 243
Query: 844 LNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMVHDLYKTLTPVSTAY 1023
LNAWQLVKELKEAL I AAASFKHVSPAGAAVGIPLSEDEAKVCMV+DLYKTLTP+STAY
Sbjct: 244 LNAWQLVKELKEALDIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISTAY 303
Query: 1024 ARARGADRMSSF 1059
ARARGADRMSSF
Sbjct: 304 ARARGADRMSSF 315
Score = 36.6 bits (83), Expect(2) = e-170
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +2
Query: 1058 FGDFVALSDVCDVPTA 1105
FGDF+ALSD+CDVPTA
Sbjct: 315 FGDFIALSDICDVPTA 330
>ref|XP_545634.2| PREDICTED: similar to 5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase/IMP cyclohydrolase isoform 3 [Canis
familiaris].
Length = 592
Score = 580 bits (1496), Expect(2) = e-170
Identities = 293/312 (93%), Positives = 305/312 (97%)
Frame = +1
Query: 124 GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 303
GQLALFSVSDKTGLVEFAR+L SVGL+L+ASGGTA ALRDAGLAVRDVSELTGFPEMLGG
Sbjct: 4 GQLALFSVSDKTGLVEFARSLTSVGLSLLASGGTATALRDAGLAVRDVSELTGFPEMLGG 63
Query: 304 RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ 483
RVKTLHPAVHAGILARNIPED+ADMARLDFSLIRVVVCNLYPFVKTVASPDVT+E+AVEQ
Sbjct: 64 RVKTLHPAVHAGILARNIPEDNADMARLDFSLIRVVVCNLYPFVKTVASPDVTVEQAVEQ 123
Query: 484 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA 663
IDIGGVTLLRAAAKNHARVTVVCEPEDY AVS+EMQ SD+KDTSLETRRQLALKAFTHTA
Sbjct: 124 IDIGGVTLLRAAAKNHARVTVVCEPEDYVAVSTEMQSSDSKDTSLETRRQLALKAFTHTA 183
Query: 664 QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 843
QYDEAISDYFR++Y KGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA
Sbjct: 184 QYDEAISDYFRRQYSKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 243
Query: 844 LNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMVHDLYKTLTPVSTAY 1023
LNAWQLVKELKEAL I AAASFKHVSPAGAAVGIPLSEDEAKVCMV+DLYKTLTP+STAY
Sbjct: 244 LNAWQLVKELKEALDIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISTAY 303
Query: 1024 ARARGADRMSSF 1059
ARARGADRMSSF
Sbjct: 304 ARARGADRMSSF 315
Score = 36.6 bits (83), Expect(2) = e-170
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +2
Query: 1058 FGDFVALSDVCDVPTA 1105
FGDF+ALSD+CDVPTA
Sbjct: 315 FGDFIALSDICDVPTA 330
>ref|XP_855434.1| PREDICTED: similar to 5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase/IMP cyclohydrolase [Canis familiaris].
Length = 401
Score = 255 bits (652), Expect(3) = 4e-71
Identities = 125/140 (89%), Positives = 132/140 (94%)
Frame = +1
Query: 586 MQGSDNKDTSLETRRQLALKAFTHTAQYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPA 765
MQ S++KDTSLETR QLALKAF H AQY EAISDYFR++Y KGISQMPLRYGMNPHQTPA
Sbjct: 1 MQSSNSKDTSLETRCQLALKAFIHMAQYGEAISDYFRRQYSKGISQMPLRYGMNPHQTPA 60
Query: 766 QLYTLKPKLPITVLNGAPGFINLCDALNAWQLVKELKEALGIAAAASFKHVSPAGAAVGI 945
QLYTLKPKLP+TVLNGAPGFINLCDALNAWQLVKELKEALGI A+ASFKHVSPAGAAVGI
Sbjct: 61 QLYTLKPKLPVTVLNGAPGFINLCDALNAWQLVKELKEALGIPASASFKHVSPAGAAVGI 120
Query: 946 PLSEDEAKVCMVHDLYKTLT 1005
PL EDEAKVCMV+DLYKTLT
Sbjct: 121 PLREDEAKVCMVYDLYKTLT 140
Score = 28.1 bits (61), Expect(3) = 4e-71
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 1059 LVTLLHYLMFAMSPL 1103
LVTLLHYLMF MS L
Sbjct: 156 LVTLLHYLMFVMSLL 170
Score = 25.4 bits (54), Expect(3) = 4e-71
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 1016 LHMHEQEELIGCL 1054
LHM EQE L+GCL
Sbjct: 142 LHMQEQEGLMGCL 154
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,710,494
Number of extensions: 1142251
Number of successful extensions: 4130
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4121
Number of HSP's successfully gapped: 13
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008939
(1105 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124208.1| bifunctional purine biosynthesis protein PUR... 611 e-179
Alignment gi|XP_003359688.1| PREDICTED: bifunctional purine biosynthesis ... 446 e-125
Alignment gi|XP_003359687.1| PREDICTED: bifunctional purine biosynthesis ... 172 4e-48
>ref|NP_001124208.1| bifunctional purine biosynthesis protein PURH [Sus scrofa].
Length = 592
Score = 611 bits (1576), Expect(2) = e-179
Identities = 312/312 (100%), Positives = 312/312 (100%)
Frame = +1
Query: 124 GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 303
GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG
Sbjct: 4 GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 63
Query: 304 RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ 483
RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ
Sbjct: 64 RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ 123
Query: 484 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA 663
IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA
Sbjct: 124 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA 183
Query: 664 QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 843
QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA
Sbjct: 184 QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 243
Query: 844 LNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMVHDLYKTLTPVSTAY 1023
LNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMVHDLYKTLTPVSTAY
Sbjct: 244 LNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMVHDLYKTLTPVSTAY 303
Query: 1024 ARARGADRMSSF 1059
ARARGADRMSSF
Sbjct: 304 ARARGADRMSSF 315
Score = 37.4 bits (85), Expect(2) = e-179
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1058 FGDFVALSDVCDVPTA 1105
FGDFVALSDVCDVPTA
Sbjct: 315 FGDFVALSDVCDVPTA 330
>ref|XP_003359688.1| PREDICTED: bifunctional purine biosynthesis protein PURH-like [Sus
scrofa].
Length = 444
Score = 446 bits (1147), Expect = e-125
Identities = 227/230 (98%), Positives = 228/230 (99%)
Frame = +1
Query: 124 GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 303
GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG
Sbjct: 4 GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 63
Query: 304 RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ 483
RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ
Sbjct: 64 RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ 123
Query: 484 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA 663
IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA
Sbjct: 124 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA 183
Query: 664 QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNG 813
QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPIT + G
Sbjct: 184 QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITAIEG 233
>ref|XP_003359687.1| PREDICTED: bifunctional purine biosynthesis protein PURH-like [Sus
scrofa].
Length = 277
Score = 172 bits (437), Expect(2) = 4e-48
Identities = 86/86 (100%), Positives = 86/86 (100%)
Frame = +1
Query: 802 VLNGAPGFINLCDALNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMV 981
VLNGAPGFINLCDALNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMV
Sbjct: 28 VLNGAPGFINLCDALNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMV 87
Query: 982 HDLYKTLTPVSTAYARARGADRMSSF 1059
HDLYKTLTPVSTAYARARGADRMSSF
Sbjct: 88 HDLYKTLTPVSTAYARARGADRMSSF 113
Score = 37.4 bits (85), Expect(2) = 4e-48
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1058 FGDFVALSDVCDVPTA 1105
FGDFVALSDVCDVPTA
Sbjct: 113 FGDFVALSDVCDVPTA 128
Score = 55.1 bits (131), Expect = 7e-08
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +1
Query: 1 HPARPSDFSGQFWPHRLPLHVE 66
HPARPSDFSGQFWPHRLPLHVE
Sbjct: 247 HPARPSDFSGQFWPHRLPLHVE 268
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,961,521
Number of extensions: 711329
Number of successful extensions: 2516
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2516
Number of HSP's successfully gapped: 6
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008939
(1105 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080471.2| bifunctional purine biosynthesis protein PURH [... 561 e-164
>ref|NP_080471.2| bifunctional purine biosynthesis protein PURH [Mus musculus].
Length = 592
Score = 561 bits (1446), Expect(2) = e-164
Identities = 280/311 (90%), Positives = 300/311 (96%)
Frame = +1
Query: 127 QLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGGR 306
QLALFSVSDKTGLVEFAR+LAS+GL+L+ASGGTAKA+RDAGLAVRDVSELTGFPEMLGGR
Sbjct: 5 QLALFSVSDKTGLVEFARSLASLGLSLVASGGTAKAIRDAGLAVRDVSELTGFPEMLGGR 64
Query: 307 VKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQI 486
VKTLHPAVHAGILARNIPED+ADMARLDF+L+RVVVCNLYPFVKTVASPDVT+E AVEQI
Sbjct: 65 VKTLHPAVHAGILARNIPEDAADMARLDFNLVRVVVCNLYPFVKTVASPDVTVEAAVEQI 124
Query: 487 DIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTAQ 666
DIGGVTLLRAAAKNHARVTVVCEPEDYA V++EM GSD+KDTSLETRR LALKAFTHTAQ
Sbjct: 125 DIGGVTLLRAAAKNHARVTVVCEPEDYAGVAAEMHGSDSKDTSLETRRHLALKAFTHTAQ 184
Query: 667 YDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDAL 846
YDEAISDYFRK+Y KGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDAL
Sbjct: 185 YDEAISDYFRKQYSKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDAL 244
Query: 847 NAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMVHDLYKTLTPVSTAYA 1026
NAWQLV EL+ A+ I AAASFKHVSPAGAAVG+PLSEDEA+VCMV+DLY TLTP++ AYA
Sbjct: 245 NAWQLVTELRGAVDIPAAASFKHVSPAGAAVGVPLSEDEARVCMVYDLYPTLTPLAVAYA 304
Query: 1027 RARGADRMSSF 1059
RARGADRMSSF
Sbjct: 305 RARGADRMSSF 315
Score = 37.0 bits (84), Expect(2) = e-164
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 1058 FGDFVALSDVCDVPTA 1105
FGDFVALSD+CDVPTA
Sbjct: 315 FGDFVALSDICDVPTA 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,646,967
Number of extensions: 960050
Number of successful extensions: 3458
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3437
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008939
(1105 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004035.2| bifunctional purine biosynthesis protein PURH [... 577 e-169
>ref|NP_004035.2| bifunctional purine biosynthesis protein PURH [Homo sapiens].
Length = 592
Score = 577 bits (1488), Expect(2) = e-169
Identities = 289/312 (92%), Positives = 303/312 (97%)
Frame = +1
Query: 124 GQLALFSVSDKTGLVEFARNLASVGLNLIASGGTAKALRDAGLAVRDVSELTGFPEMLGG 303
GQLALFSVSDKTGLVEFARNL ++GLNL+ASGGTAKALRDAGLAVRDVSELTGFPEMLGG
Sbjct: 4 GQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLGG 63
Query: 304 RVKTLHPAVHAGILARNIPEDSADMARLDFSLIRVVVCNLYPFVKTVASPDVTLEEAVEQ 483
RVKTLHPAVHAGILARNIPED+ADMARLDF+LIRVV CNLYPFVKTVASP VT+EEAVEQ
Sbjct: 64 RVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEAVEQ 123
Query: 484 IDIGGVTLLRAAAKNHARVTVVCEPEDYAAVSSEMQGSDNKDTSLETRRQLALKAFTHTA 663
IDIGGVTLLRAAAKNHARVTVVCEPEDY VS+EMQ S++KDTSLETRRQLALKAFTHTA
Sbjct: 124 IDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFTHTA 183
Query: 664 QYDEAISDYFRKEYGKGISQMPLRYGMNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDA 843
QYDEAISDYFRK+Y KG+SQMPLRYGMNPHQTPAQLYTL+PKLPITVLNGAPGFINLCDA
Sbjct: 184 QYDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINLCDA 243
Query: 844 LNAWQLVKELKEALGIAAAASFKHVSPAGAAVGIPLSEDEAKVCMVHDLYKTLTPVSTAY 1023
LNAWQLVKELKEALGI AAASFKHVSPAGAAVGIPLSEDEAKVCMV+DLYKTLTP+S AY
Sbjct: 244 LNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISAAY 303
Query: 1024 ARARGADRMSSF 1059
ARARGADRMSSF
Sbjct: 304 ARARGADRMSSF 315
Score = 37.4 bits (85), Expect(2) = e-169
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 1058 FGDFVALSDVCDVPTA 1105
FGDFVALSDVCDVPTA
Sbjct: 315 FGDFVALSDVCDVPTA 330
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,060,739
Number of extensions: 1132024
Number of successful extensions: 3819
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3815
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008939
(1105 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 315 3e-83
>Sscrofa_Chr15
|| Length = 157681621
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 644 aggctttcactcatacggcacaatatgacgaagcaatttcagattacttcaggaaagagt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130326761 aggctttcactcatacggcacaatatgacgaagcaatttcagattacttcaggaaagagt 130326820
Query: 704 atggtaaaggaatatctcagatgcccttgaggtatggaatgaaccctcatcaaactcctg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130326821 atggtaaaggaatatctcagatgcccttgaggtatggaatgaaccctcatcaaactcctg 130326880
Query: 764 cccagttatataccctgaagcccaagcttcccatcacag 802
|||||||||||||||||||||||||||||||||||||||
Sbjct: 130326881 cccagttatataccctgaagcccaagcttcccatcacag 130326919
Score = 289 bits (146), Expect = 2e-75
Identities = 152/154 (98%)
Strand = Plus / Plus
Query: 493 ggtggggtaaccttgttgagagcggcagccaaaaatcacgctcgagtgacagtagtgtgt 552
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130325941 ggtggggtaaccttgctgagagcggcagccaaaaatcacgctcgagtgacagtagtgtgt 130326000
Query: 553 gaaccagaggactacgcggctgtgtcctcggagatgcagggctctgacaacaaagacaca 612
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130326001 gaaccagaggactacgcagctgtgtcctcggagatgcagggctctgacaacaaagacaca 130326060
Query: 613 tctctggagacaagacgtcagttagccttgaagg 646
||||||||||||||||||||||||||||||||||
Sbjct: 130326061 tctctggagacaagacgtcagttagccttgaagg 130326094
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1 cacccggcccgcccctctgacttctccggtcagttctggccgcaccgcctccctctgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130510677 cacccggcccgcccctctgacttctccggtcagttctggccgcaccgcctccctctgcac 130510736
Query: 61 gtggagtcgccgcttttgtcccccgcgcgtccctgagtcccgccgtctgcagccatggcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130510737 gtggagtcgccgcttttgtcccccgcgcgtccctgagtcccgccgtctgcagccatggcg 130510796
Query: 121 cctgggcagctcg 133
|||||||||||||
Sbjct: 130510797 cctgggcagctcg 130510809
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 801 agtgctgaatggagctcctggatttataaacttgtgtgatgctttaaatgcctggcagct 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130331477 agtgctgaatggagctcctggatttataaacttgtgtgatgctttaaatgcctggcagct 130331536
Query: 861 ggtgaaggaactcaaagaagctttaggcattgcagctgctgcctctttcaaacatgtcag 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130331537 ggtgaaggaactcaaagaagctttaggcattgcagctgctgcctctttcaaacatgtcag 130331596
Query: 921 cccagcagg 929
|||||||||
Sbjct: 130331597 cccagcagg 130331605
Score = 254 bits (128), Expect = 9e-65
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 133 gccttatttagtgtctctgacaaaactggccttgtggaatttgccaggaacctagcttct 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130511106 gccttatttagtgtctctgacaaaactggccttgtggaatttgccaggaacctagcttct 130511165
Query: 193 gttggtttgaatctgatcgcttctggagggaccgcaaaagctctcagagatgctggtctg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130511166 gttggtttgaatctgatcgcttctggagggaccgcaaaagctctcagagatgctggtctg 130511225
Query: 253 gcagtcag 260
||||||||
Sbjct: 130511226 gcagtcag 130511233
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 926 caggcgctgctgttggaattccactcagtgaagatgaagccaaagtctgcatggtccatg 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130332934 caggcgctgctgttggaattccactcagtgaagatgaagccaaagtctgcatggtccatg 130332993
Query: 986 atctgtataaaaccctcacacccgtatccactgcatatgcacgagcaagagg 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130332994 atctgtataaaaccctcacacccgtatccactgcatatgcacgagcaagagg 130333045
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 403 agagttgtcgtttgtaatctgtatccctttgtgaagacagtggcttctccagatgtaact 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130325055 agagttgtcgtttgtaatctgtatccctttgtgaagacagtggcttctccagatgtaact 130325114
Query: 463 cttgaagaggctgttgaacagattgatattggt 495
|||||||||||||||||||||||||||||||||
Sbjct: 130325115 cttgaagaggctgttgaacagattgatattggt 130325147
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 337 ggaatcttggctcgtaatatcccagaagacagtgctgacatggccagacttgatttcagt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130321701 ggaatcttggctcgtaatatcccagaagacagtgctgacatggccagacttgatttcagt 130321760
Query: 397 cttataag 404
||||||||
Sbjct: 130321761 cttataag 130321768
Score = 117 bits (59), Expect = 1e-23
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1035 aggagctgataggatgtcttccttttggtgactttgttgcattatctgatgtttgcgatg 1094
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 130333841 aggagctgataggatgtcttccttt-ggtgactttgttgcattatctgatgtttgtgatg 130333899
Query: 1095 tccccactgcc 1105
|||||||||||
Sbjct: 130333900 tccccactgcc 130333910
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,062,225
Number of extensions: 151
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 9
Length of query: 1105
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1084
Effective length of database: 2,808,413,156
Effective search space: 3044319861104
Effective search space used: 3044319861104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)