Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008942
(1056 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029492.2| bifunctional arginine demethylase and lysyl-... 622 e-178
Alignment gi|XP_582558.5| PREDICTED: jumonji domain containing 4 isoform ... 81 2e-15
Alignment gi|XP_002688559.1| PREDICTED: jumonji domain containing 4, part... 80 2e-15
Alignment gi|XP_002698015.1| PREDICTED: hypothetical protein [Bos taurus]. 62 7e-10
Alignment gi|XP_001789379.1| PREDICTED: hypothetical protein [Bos taurus]. 62 7e-10
Alignment gi|NP_001014911.1| HSPB1-associated protein 1 [Bos taurus]. 49 6e-06
>ref|NP_001029492.2| bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 [Bos
taurus].
Length = 403
Score = 622 bits (1604), Expect = e-178
Identities = 293/297 (98%), Positives = 295/297 (99%)
Frame = +2
Query: 164 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFPLNPAAVADNVERADALQLSVEEFV 343
MNHKSKKRIREAKRSARPELKDSLDWTRHNY+ESFPLNPAAVADNVERADALQLSVEEFV
Sbjct: 1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYFESFPLNPAAVADNVERADALQLSVEEFV 60
Query: 344 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 523
ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
Sbjct: 61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120
Query: 524 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYTVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 703
MESTRDDSPLYIFDSSYGEHPKRRKLLEDY VPKFFTDDLFQYAGEKRRPPYRWFVMGPP
Sbjct: 121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 180
Query: 704 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY 883
RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY
Sbjct: 181 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY 240
Query: 884 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFARNTNFPVV 1054
PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFA +TNFPVV
Sbjct: 241 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 297
>ref|XP_582558.5| PREDICTED: jumonji domain containing 4 isoform 1, partial [Bos
taurus].
Length = 572
Score = 80.9 bits (198), Expect = 2e-15
Identities = 81/279 (29%), Positives = 119/279 (42%), Gaps = 24/279 (8%)
Frame = +2
Query: 278 PAAVADNVERADALQ----LSVEEFVERYERPYKPVVLLNA-QEGWSAQEKWTLERLKRK 442
P+ V ++R D ++ S +F + Y P P V +A E W ++ W K
Sbjct: 170 PSRVCPKLDRVDFIEKPDSFSYADFFKGYLLPNLPCVFSSAFTEDWGSRRLWVTSSGKPN 229
Query: 443 --YRNQKF-------KCG--EDNDGYSVKMKMKYYI----EYMESTRDDSP--LYIFDSS 571
Y Q + CG E N M ++ YI EY+++ S LY+ D
Sbjct: 230 FDYLLQNYDVVVPVANCGVQEYNSNPKEHMPLRDYISYWKEYIQANYSSSRGCLYLKDW- 288
Query: 572 YGEHPKRRKLLED-YTVPKFFTDD-LFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTS 745
H R L E +T+P +F+ D L +Y YR+ MGP + + H D +
Sbjct: 289 ---HLCRDFLAEGVFTLPIYFSSDWLNEYWDALDVDDYRFVYMGPTGTWSPFHADVFRSF 345
Query: 746 AWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIYPRTQLPTWPPEFKP 925
+W+ + G K+W FP L GG D +T ++ R P P
Sbjct: 346 SWSVNICGRKKWFFFPPGQEEALRDC---HGGLPYD--VTSPTLLDSRLH-PMRDRCGPP 399
Query: 926 LEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFARNTN 1042
LE+ Q+ GE VFVP GW H V NL+ TI+I N+ N
Sbjct: 400 LEVTQEAGEMVFVPSGWHHQVHNLEDTISINHNWVNGCN 438
>ref|XP_002688559.1| PREDICTED: jumonji domain containing 4, partial [Bos taurus].
Length = 566
Score = 80.5 bits (197), Expect = 2e-15
Identities = 81/279 (29%), Positives = 119/279 (42%), Gaps = 24/279 (8%)
Frame = +2
Query: 278 PAAVADNVERADALQ----LSVEEFVERYERPYKPVVLLNA-QEGWSAQEKWTLERLKRK 442
P+ V ++R D ++ S +F + Y P P V +A E W ++ W K
Sbjct: 164 PSRVCPKLDRVDFIEKPDSFSYADFFKGYLLPNLPCVFSSAFTEDWGSRRLWVTPSGKPN 223
Query: 443 --YRNQKF-------KCG--EDNDGYSVKMKMKYYI----EYMESTRDDSP--LYIFDSS 571
Y Q + CG E N M ++ YI EY+++ S LY+ D
Sbjct: 224 FDYLLQNYDVVVPVANCGVQEYNSNPKEHMPLRDYISYWKEYIQANYSSSRGCLYLKDW- 282
Query: 572 YGEHPKRRKLLED-YTVPKFFTDD-LFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTS 745
H R L E +T+P +F+ D L +Y YR+ MGP + + H D +
Sbjct: 283 ---HLCRDFLAEGVFTLPIYFSSDWLNEYWDALDVDDYRFVYMGPTGTWSPFHADVFRSF 339
Query: 746 AWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIYPRTQLPTWPPEFKP 925
+W+ + G K+W FP L GG D +T ++ R P P
Sbjct: 340 SWSVNICGRKKWFFFPPGQEEALRDC---HGGLPYD--VTSPTLLDSRLH-PMRDRCGPP 393
Query: 926 LEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFARNTN 1042
LE+ Q+ GE VFVP GW H V NL+ TI+I N+ N
Sbjct: 394 LEVTQEAGEMVFVPSGWHHQVHNLEDTISINHNWVNGCN 432
>ref|XP_002698015.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 269
Score = 62.4 bits (150), Expect = 7e-10
Identities = 69/263 (26%), Positives = 108/263 (41%), Gaps = 13/263 (4%)
Frame = +2
Query: 269 PLNPAAVADN----VERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLK 436
P PAAV + VER LS EFV+RY +PV+L + ++ T +RL
Sbjct: 36 PGAPAAVTEEEHCTVERR--ADLSYAEFVQRYAFS-RPVILQGLTDNSRFRDLCTRQRLL 92
Query: 437 RKYRNQKFKCGEDNDGYS---VKMKMKYYIEYMESTRD-----DSPLYIF-DSSYGEHPK 589
+ + + N YS V + + Y+E M +D + LY F D+++ E
Sbjct: 93 ASFGDSVVRLSTANT-YSYQKVDLPFEKYVEQMLHPQDPISMGNDTLYFFGDNNFTEWAS 151
Query: 590 RRKLLEDYTVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQG 769
L Y+ P F G P Y + + G +G+G+ G ++ ++ G
Sbjct: 152 ---LFRHYSPPPF------SLLGTT--PAYSFGIAG---AGSGVPFHWHGPG-FSEVIYG 196
Query: 770 HKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIYPRTQLPTWPPEFKPLEILQKPG 949
KRW L+P E + + W YP P +PLE
Sbjct: 197 RKRWFLYPPEKTPEF---------HPNKTTLAWLRDTYPALT-----PSARPLECTIHSH 242
Query: 950 ETVFVPGGWWHVVLNLDTTIAIT 1018
+ ++ P WWH LNLDT++ I+
Sbjct: 243 QVLYFPDRWWHATLNLDTSVFIS 265
>ref|XP_001789379.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 269
Score = 62.4 bits (150), Expect = 7e-10
Identities = 69/263 (26%), Positives = 108/263 (41%), Gaps = 13/263 (4%)
Frame = +2
Query: 269 PLNPAAVADN----VERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLK 436
P PAAV + VER LS EFV+RY +PV+L + ++ T +RL
Sbjct: 36 PGAPAAVTEEEHCTVERR--ADLSYAEFVQRYAFS-RPVILQGLTDNSRFRDLCTRQRLL 92
Query: 437 RKYRNQKFKCGEDNDGYS---VKMKMKYYIEYMESTRD-----DSPLYIF-DSSYGEHPK 589
+ + + N YS V + + Y+E M +D + LY F D+++ E
Sbjct: 93 ASFGDSVVRLSTANT-YSYQKVDLPFEKYVEQMLHPQDPISMGNDTLYFFGDNNFTEWAS 151
Query: 590 RRKLLEDYTVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQG 769
L Y+ P F G P Y + + G +G+G+ G ++ ++ G
Sbjct: 152 ---LFRHYSPPPF------SLLGTT--PAYSFGIAG---AGSGVPFHWHGPG-FSEVIYG 196
Query: 770 HKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIYPRTQLPTWPPEFKPLEILQKPG 949
KRW L+P E + + W YP P +PLE
Sbjct: 197 RKRWFLYPPEKTPEF---------HPNKTTLAWLRDTYPALT-----PSARPLECTIHSH 242
Query: 950 ETVFVPGGWWHVVLNLDTTIAIT 1018
+ ++ P WWH LNLDT++ I+
Sbjct: 243 QVLYFPDRWWHATLNLDTSVFIS 265
>ref|NP_001014911.1| HSPB1-associated protein 1 [Bos taurus].
Length = 484
Score = 49.3 bits (116), Expect = 6e-06
Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 23/240 (9%)
Frame = +2
Query: 365 KPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEYMESTRDD 544
+P V N W AQ WT + L ++ + + + Y+E+T ++
Sbjct: 42 QPAVFYNMVFDWPAQH-WTAKHLSEVLHGKQIRFRMGTKSTDTAPQFETACNYVEATLEE 100
Query: 545 SPLYIFDSS----------------YGEHPKRRKLLEDYTVPKFFTDDL---FQYAGEKR 667
+ D S Y ++ L ED T F D + F + G
Sbjct: 101 FLSWNSDQSSISGAFRDYDHSKFWAYADYKYFVSLFEDKT--DIFQDVIWSDFGFPGRNG 158
Query: 668 RPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQ 847
+ W +G + T H+D G + VQG KRW LFP P + + +
Sbjct: 159 QESTLW--IGSLGAHTPCHLDTYGCNLVFQ-VQGRKRWHLFP---PEDTPFLYPTRIPYE 212
Query: 848 QDEAITWFNIIYPRTQLPTWPPEFKPLE---ILQKPGETVFVPGGWWHVVLNLD-TTIAI 1015
+ + N++ P + P+F+ + PG+ +FVP WWH V ++D T++I
Sbjct: 213 ESSVFSKINVVNPDLKRF---PQFRKARRHMVTLSPGQVLFVPRHWWHYVESIDPVTVSI 269
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,657,323
Number of extensions: 1236596
Number of successful extensions: 6225
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6147
Number of HSP's successfully gapped: 6
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008942
(1056 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857887.1| PREDICTED: similar to Protein PTDSR (Phosphatid... 617 e-177
Alignment gi|XP_849080.1| PREDICTED: similar to Protein PTDSR (Phosphatid... 617 e-177
Alignment gi|XP_540454.2| PREDICTED: similar to phosphatidylserine recept... 617 e-177
Alignment gi|XP_547212.2| PREDICTED: similar to RIKEN cDNA 2610003J06 [Ca... 71 2e-12
Alignment gi|XP_532414.2| PREDICTED: similar to jumonji domain containing... 65 8e-11
Alignment gi|XP_535763.2| PREDICTED: similar to Hspb associated protein 1... 55 1e-07
>ref|XP_857887.1| PREDICTED: similar to Protein PTDSR (Phosphatidylserine receptor)
isoform 3 [Canis familiaris].
Length = 420
Score = 617 bits (1590), Expect = e-177
Identities = 291/297 (97%), Positives = 294/297 (98%)
Frame = +2
Query: 164 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFPLNPAAVADNVERADALQLSVEEFV 343
MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESF LNPAAVADNVERADALQLSVEEFV
Sbjct: 1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLNPAAVADNVERADALQLSVEEFV 60
Query: 344 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 523
ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
Sbjct: 61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120
Query: 524 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYTVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 703
MESTRDDSPLYIFDSSYGEHPKRRKLLEDY VPKFFTDDLFQYAGEKRRPPYRWFVMGPP
Sbjct: 121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 180
Query: 704 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY 883
RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWF+II+
Sbjct: 181 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFSIIH 240
Query: 884 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFARNTNFPVV 1054
PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFA +TNFPVV
Sbjct: 241 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 297
>ref|XP_849080.1| PREDICTED: similar to Protein PTDSR (Phosphatidylserine receptor)
isoform 2 [Canis familiaris].
Length = 403
Score = 617 bits (1590), Expect = e-177
Identities = 291/297 (97%), Positives = 294/297 (98%)
Frame = +2
Query: 164 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFPLNPAAVADNVERADALQLSVEEFV 343
MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESF LNPAAVADNVERADALQLSVEEFV
Sbjct: 1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLNPAAVADNVERADALQLSVEEFV 60
Query: 344 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 523
ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
Sbjct: 61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120
Query: 524 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYTVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 703
MESTRDDSPLYIFDSSYGEHPKRRKLLEDY VPKFFTDDLFQYAGEKRRPPYRWFVMGPP
Sbjct: 121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 180
Query: 704 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY 883
RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWF+II+
Sbjct: 181 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFSIIH 240
Query: 884 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFARNTNFPVV 1054
PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFA +TNFPVV
Sbjct: 241 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 297
>ref|XP_540454.2| PREDICTED: similar to phosphatidylserine receptor isoform 1 [Canis
familiaris].
Length = 335
Score = 617 bits (1590), Expect = e-177
Identities = 291/297 (97%), Positives = 294/297 (98%)
Frame = +2
Query: 164 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFPLNPAAVADNVERADALQLSVEEFV 343
MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESF LNPAAVADNVERADALQLSVEEFV
Sbjct: 1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLNPAAVADNVERADALQLSVEEFV 60
Query: 344 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 523
ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
Sbjct: 61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120
Query: 524 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYTVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 703
MESTRDDSPLYIFDSSYGEHPKRRKLLEDY VPKFFTDDLFQYAGEKRRPPYRWFVMGPP
Sbjct: 121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 180
Query: 704 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY 883
RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWF+II+
Sbjct: 181 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFSIIH 240
Query: 884 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFARNTNFPVV 1054
PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFA +TNFPVV
Sbjct: 241 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 297
>ref|XP_547212.2| PREDICTED: similar to RIKEN cDNA 2610003J06 [Canis familiaris].
Length = 277
Score = 70.9 bits (172), Expect = 2e-12
Identities = 75/286 (26%), Positives = 115/286 (40%), Gaps = 18/286 (6%)
Frame = +2
Query: 215 PELKDSLDWTRHNYYESFPLNPAAVADN----VERADALQLSVEEFVERYERPYKPVVLL 382
P L+ + D + P PAAVA+ VER LS EFV++Y +PV+L
Sbjct: 26 PVLRGAGDTGDGGWQRRGPGAPAAVAEEERCAVERR--ADLSYAEFVQQYAFS-RPVILQ 82
Query: 383 NAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYS---VKMKMKYYIEYMESTRDDSPL 553
+ + + ERL + + + N YS V + + Y+E++ +D S L
Sbjct: 83 RLTDNSRFRALCSRERLLASFGDSVVRLSTANT-YSYRKVDLPFQDYVEHLLHPQDPSSL 141
Query: 554 -----YIF-DSSYGEHPKRRKLLEDYTVPKFFTDDL-----FQYAGEKRRPPYRWFVMGP 700
Y F D+ + E L + Y+ P F F AG P+ W GP
Sbjct: 142 GNDTLYFFGDNDFSEWAS---LFQHYSPPPFSLLGTTAAYSFGIAGAGSGVPFHWH--GP 196
Query: 701 PRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNII 880
++ ++ G KRW L+P E + + W +
Sbjct: 197 ---------------GFSEVIYGRKRWFLYPPEKTPEF---------HPNKTTLAWLQDV 232
Query: 881 YPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAIT 1018
YP T P +PLE + GE ++ P WWH LNLDT++ I+
Sbjct: 233 YP-----TLAPSERPLECTVQAGEVLYFPDRWWHATLNLDTSVFIS 273
>ref|XP_532414.2| PREDICTED: similar to jumonji domain containing 4 [Canis familiaris].
Length = 375
Score = 65.5 bits (158), Expect = 8e-11
Identities = 65/205 (31%), Positives = 88/205 (42%), Gaps = 12/205 (5%)
Frame = +2
Query: 464 CG--EDNDGYSVKMKMKYYIEYMESTRD---DSP---LYIFDSSYGEHPKRRKLLED-YT 616
CG E N +M ++ YI Y + SP LY+ D H R L ED +T
Sbjct: 61 CGVREYNSNPKEQMLLRDYISYWKDYIQGGYSSPRGCLYLKDW----HLCRDSLAEDVFT 116
Query: 617 VPKFFTDD-LFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFP 793
+P +F+ D L +Y YR+ MGP +GT W+ + G K+W FP
Sbjct: 117 LPMYFSSDWLNEYWDILDVDDYRFIYMGP--AGT----------CWSVNICGRKKWFFFP 164
Query: 794 TSTPRELIKVTREEGGNQQDEAITWF--NIIYPRTQLPTWPPEFKPLEILQKPGETVFVP 967
L GG D + +YP + + PLE+ Q+ GE VFVP
Sbjct: 165 PGQEEALRDC---HGGLPYDVTSPALLDSQLYPMREHCS-----PPLEVTQEAGEMVFVP 216
Query: 968 GGWWHVVLNLDTTIAITQNFARNTN 1042
GW H V NLD TI+I N+ N
Sbjct: 217 SGWHHQVHNLDDTISINHNWVNGCN 241
>ref|XP_535763.2| PREDICTED: similar to Hspb associated protein 1 [Canis familiaris].
Length = 490
Score = 55.1 bits (131), Expect = 1e-07
Identities = 63/266 (23%), Positives = 103/266 (38%), Gaps = 20/266 (7%)
Frame = +2
Query: 278 PAAVADNVERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQK 457
PAA A VE + E+ E +P V N W A WT + L +++
Sbjct: 13 PAAGAGEVEGERVKPFTPEKAKEIIMSLQQPAVFCNMAFDWPAHH-WTAKHLSEVLHDKQ 71
Query: 458 FKCGEDNDGYSVKMKMKYYIEYMESTRDD------------SPLYIFDSS----YGEHPK 589
+ + + Y+E+T ++ P +D S Y ++
Sbjct: 72 IRFRMGMKRTDTVPQFETTCAYVEATLEEFLTWNCNQSTISGPFRDYDHSKFWAYADYKY 131
Query: 590 RRKLLEDYTVPKFFTDDL---FQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNAL 760
L +D T F D + F + G R W +G + T H+D G +
Sbjct: 132 FISLFDDKT--DIFQDVIWSDFGFPGRNGRESTLW--IGSMGAHTPCHLDSYGCNLVFQ- 186
Query: 761 VQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIYPRTQLPTWPPEFKPLEILQ 940
VQG KRW LFP P + + ++ + N++ P Q + + +
Sbjct: 187 VQGRKRWHLFP---PEDTPFLYPTRIPYEESSVFSKINVVNPDLQRFPQFCKARRYMVTL 243
Query: 941 KPGETVFVPGGWWHVVLNLD-TTIAI 1015
KPG+ +FVP WWH V ++D T++I
Sbjct: 244 KPGQVLFVPRHWWHYVESIDPVTVSI 269
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,749,134
Number of extensions: 1291829
Number of successful extensions: 6508
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6431
Number of HSP's successfully gapped: 6
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008942
(1056 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357998.1| PREDICTED: bifunctional arginine demethylase... 617 e-177
Alignment gi|XP_003354211.1| PREDICTED: jmjC domain-containing protein 4 ... 81 1e-15
Alignment gi|XP_003123657.2| PREDICTED: jmjC domain-containing protein 4 ... 81 1e-15
Alignment gi|XP_003132684.1| PREDICTED: HSPB1-associated protein 1-like [... 52 4e-07
>ref|XP_003357998.1| PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase
JMJD6-like [Sus scrofa].
Length = 414
Score = 617 bits (1590), Expect = e-177
Identities = 292/297 (98%), Positives = 293/297 (98%)
Frame = +2
Query: 164 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFPLNPAAVADNVERADALQLSVEEFV 343
MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFPLNPAAVADNVERADALQLSVEEFV
Sbjct: 1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFPLNPAAVADNVERADALQLSVEEFV 60
Query: 344 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 523
ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
Sbjct: 61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120
Query: 524 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYTVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 703
MESTRDDSPLYIFDSSYGEHPKRRKLLEDYTVPKFFTDDLFQYAGEKRRPPYR MGPP
Sbjct: 121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYTVPKFFTDDLFQYAGEKRRPPYRXXXMGPP 180
Query: 704 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY 883
RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY
Sbjct: 181 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY 240
Query: 884 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFARNTNFPVV 1054
PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFA +TNFPVV
Sbjct: 241 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 297
>ref|XP_003354211.1| PREDICTED: jmjC domain-containing protein 4 isoform 2 [Sus scrofa].
Length = 408
Score = 80.9 bits (198), Expect = 1e-15
Identities = 81/271 (29%), Positives = 114/271 (42%), Gaps = 21/271 (7%)
Frame = +2
Query: 293 DNVERADALQLSVEEFVERYERPYKPVVLLNA-QEGWSAQEKWTLERLKRK--YRNQKF- 460
D +E D+ S +F + Y P P V +A EGW ++ W K Y Q +
Sbjct: 32 DFIENPDSF--SYADFFKGYLLPNLPCVFSSAFTEGWGSRRLWVTPSGKPNFDYLLQNYG 89
Query: 461 -------KCG--EDNDGYSVKMKMKYYI----EYMESTRDDSP--LYIFDSSYGEHPKRR 595
CG E N M +K YI EY++ S LY+ D H R
Sbjct: 90 DVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDW----HLCRD 145
Query: 596 KLLED-YTVPKFFTDD-LFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQG 769
E +T+P +F+ D L +Y YR+ MGP + + H D + +W+ + G
Sbjct: 146 SSAESVFTLPIYFSSDWLNEYWDALDVDDYRFIYMGPTGTWSPFHADIFRSFSWSVNICG 205
Query: 770 HKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIYPRTQLPTWPPEFKPLEILQKPG 949
K+W FP L GG D +T ++ R P PLE+ Q+ G
Sbjct: 206 RKKWFFFPPGQEEALRDC---HGGLPYD--VTSPTLLDSRLH-PVLNRCSPPLEVTQEAG 259
Query: 950 ETVFVPGGWWHVVLNLDTTIAITQNFARNTN 1042
E VFVP GW H V NL+ TI+I N+ N
Sbjct: 260 EMVFVPSGWHHQVHNLEDTISINHNWVNGCN 290
>ref|XP_003123657.2| PREDICTED: jmjC domain-containing protein 4 isoform 1 [Sus scrofa].
Length = 424
Score = 80.9 bits (198), Expect = 1e-15
Identities = 81/271 (29%), Positives = 114/271 (42%), Gaps = 21/271 (7%)
Frame = +2
Query: 293 DNVERADALQLSVEEFVERYERPYKPVVLLNA-QEGWSAQEKWTLERLKRK--YRNQKF- 460
D +E D+ S +F + Y P P V +A EGW ++ W K Y Q +
Sbjct: 32 DFIENPDSF--SYADFFKGYLLPNLPCVFSSAFTEGWGSRRLWVTPSGKPNFDYLLQNYG 89
Query: 461 -------KCG--EDNDGYSVKMKMKYYI----EYMESTRDDSP--LYIFDSSYGEHPKRR 595
CG E N M +K YI EY++ S LY+ D H R
Sbjct: 90 DVVVPVANCGVREYNSNPKEHMPLKDYISYWKEYIQGNYSSSRGCLYLKDW----HLCRD 145
Query: 596 KLLED-YTVPKFFTDD-LFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQG 769
E +T+P +F+ D L +Y YR+ MGP + + H D + +W+ + G
Sbjct: 146 SSAESVFTLPIYFSSDWLNEYWDALDVDDYRFIYMGPTGTWSPFHADIFRSFSWSVNICG 205
Query: 770 HKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIYPRTQLPTWPPEFKPLEILQKPG 949
K+W FP L GG D +T ++ R P PLE+ Q+ G
Sbjct: 206 RKKWFFFPPGQEEALRDC---HGGLPYD--VTSPTLLDSRLH-PVLNRCSPPLEVTQEAG 259
Query: 950 ETVFVPGGWWHVVLNLDTTIAITQNFARNTN 1042
E VFVP GW H V NL+ TI+I N+ N
Sbjct: 260 EMVFVPSGWHHQVHNLEDTISINHNWVNGCN 290
>ref|XP_003132684.1| PREDICTED: HSPB1-associated protein 1-like [Sus scrofa].
Length = 492
Score = 52.4 bits (124), Expect = 4e-07
Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 27/244 (11%)
Frame = +2
Query: 365 KPVVLLNAQEGWSAQEKWTLERLKRKYRNQ--KFKCGEDNDGYSVKMKMKYYIEYMESTR 538
+P V N W AQ WT + L + + +F+ G + G + + + Y+E+T
Sbjct: 45 QPAVFCNMVFDWPAQH-WTAKHLSEVLQGKQIRFRMGMKSTGTAPQFETT--CSYIEATL 101
Query: 539 DDSPLYIFDSSYGEHPKRRKLLEDYTVPKFFT--------------DDLFQ--------Y 652
++ + D S P R DY KF+ D+FQ +
Sbjct: 102 EEFLTWNCDQSTTSEPFR-----DYDHSKFWAYADYKYFVSLFEDKTDIFQDVKWSDFGF 156
Query: 653 AGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRE 832
G + W +G + T H+D G + VQG KRW LFP P + +
Sbjct: 157 PGRNGQQSTLW--IGSMGAHTPCHLDTYGCNLVFQ-VQGRKRWHLFP---PEDTPFLYPT 210
Query: 833 EGGNQQDEAITWFNIIYPRTQLPTWPPEFKPLE--ILQKPGETVFVPGGWWHVVLNLD-T 1003
++ + N++ P L +P K + PG+ +FVP WWH V ++D
Sbjct: 211 RIPYEESSVFSKINVVNP--DLKRFPQFQKARRHMVTLSPGQVLFVPRHWWHYVESIDRV 268
Query: 1004 TIAI 1015
T++I
Sbjct: 269 TVSI 272
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,939,046
Number of extensions: 801883
Number of successful extensions: 3991
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3949
Number of HSP's successfully gapped: 4
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008942
(1056 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_203971.2| bifunctional arginine demethylase and lysyl-hyd... 617 e-177
Alignment gi|NP_848774.1| jmjC domain-containing protein 4 isoform 1 [Mus... 93 3e-19
Alignment gi|NP_001191997.1| jmjC domain-containing protein 4 isoform 2 [... 83 3e-16
Alignment gi|NP_082377.2| jmjC domain-containing protein 8 [Mus musculus]. 59 8e-09
>ref|NP_203971.2| bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 [Mus
musculus].
Length = 403
Score = 617 bits (1592), Expect = e-177
Identities = 289/297 (97%), Positives = 294/297 (98%)
Frame = +2
Query: 164 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFPLNPAAVADNVERADALQLSVEEFV 343
MNHKSKKRIREAKRSARPELKDSLDWTRHNYYES+PLNPAAV DNVERADALQLSV+EFV
Sbjct: 1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESYPLNPAAVPDNVERADALQLSVKEFV 60
Query: 344 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 523
ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
Sbjct: 61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120
Query: 524 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYTVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 703
MESTRDDSPLYIFDSSYGEHPKRRKLLEDY VPKFFTDDLFQYAGEKRRPPYRWFVMGPP
Sbjct: 121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 180
Query: 704 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY 883
RSGTGIHIDPLGTSAWNALVQGHKRWCLFPT+TPRELIKVTREEGGNQQDEAITWFN+IY
Sbjct: 181 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTNTPRELIKVTREEGGNQQDEAITWFNVIY 240
Query: 884 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFARNTNFPVV 1054
PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFA +TNFPVV
Sbjct: 241 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 297
>ref|NP_848774.1| jmjC domain-containing protein 4 isoform 1 [Mus musculus].
Length = 427
Score = 93.2 bits (230), Expect = 3e-19
Identities = 78/268 (29%), Positives = 118/268 (44%), Gaps = 27/268 (10%)
Frame = +2
Query: 326 SVEEFVERYERPYKPVVLLNA-QEGWSAQEKWTLERLKR--KYRNQKF--------KCG- 469
S +FV+ + P P V +A EGW ++ +W K +Y QK+ CG
Sbjct: 42 SYADFVKGFLLPNLPCVFSSAFTEGWGSRRRWVTSEGKPDFEYLQQKYGDAVVPVANCGV 101
Query: 470 -EDNDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSYG------EHPKRRKLLED----YT 616
E N M + YI Y + S + SS G H R L+ D +T
Sbjct: 102 REYNSNPKEHMSFRDYISYWKDYIQGS----YSSSRGCLYLKDWHLCRDSLVNDLEDIFT 157
Query: 617 VPKFFTDD-LFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFP 793
+P +F+ D L ++ YR+ GP + + H D + +W+ + G K+W FP
Sbjct: 158 LPVYFSSDWLNEFWDVLNVDDYRFVYAGPRGTWSPFHADIFRSFSWSVNICGKKKWLFFP 217
Query: 794 TSTPRELIKVTREEGGNQQDEAITWFNI---IYPRTQLPTWPPEFKPLEILQKPGETVFV 964
L R+ GN + + + +YP+ Q + P +E++Q+PGE VFV
Sbjct: 218 PGEEEAL----RDCHGNLPYDVTSTELLDTHLYPKIQHHSLP-----IEVIQEPGEMVFV 268
Query: 965 PGGWWHVVLNLDTTIAITQNFARNTNFP 1048
P GW H V NLD TI+I N+ N P
Sbjct: 269 PSGWHHQVYNLDDTISINHNWVNGCNLP 296
>ref|NP_001191997.1| jmjC domain-containing protein 4 isoform 2 [Mus musculus].
Length = 415
Score = 83.2 bits (204), Expect = 3e-16
Identities = 78/268 (29%), Positives = 114/268 (42%), Gaps = 27/268 (10%)
Frame = +2
Query: 326 SVEEFVERYERPYKPVVLLNA-QEGWSAQEKWTLERLKR--KYRNQKF--------KCG- 469
S +FV+ + P P V +A EGW ++ +W K +Y QK+ CG
Sbjct: 42 SYADFVKGFLLPNLPCVFSSAFTEGWGSRRRWVTSEGKPDFEYLQQKYGDAVVPVANCGV 101
Query: 470 -EDNDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSYG------EHPKRRKLLED----YT 616
E N M + YI Y + S + SS G H R L+ D +T
Sbjct: 102 REYNSNPKEHMSFRDYISYWKDYIQGS----YSSSRGCLYLKDWHLCRDSLVNDLEDIFT 157
Query: 617 VPKFFTDD-LFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFP 793
+P +F+ D L ++ YR+ GP GT W+ + G K+W FP
Sbjct: 158 LPVYFSSDWLNEFWDVLNVDDYRFVYAGP--RGT----------CWSVNICGKKKWLFFP 205
Query: 794 TSTPRELIKVTREEGGNQQDEAITWFNI---IYPRTQLPTWPPEFKPLEILQKPGETVFV 964
L R+ GN + + + +YP+ Q + P +E++Q+PGE VFV
Sbjct: 206 PGEEEAL----RDCHGNLPYDVTSTELLDTHLYPKIQHHSLP-----IEVIQEPGEMVFV 256
Query: 965 PGGWWHVVLNLDTTIAITQNFARNTNFP 1048
P GW H V NLD TI+I N+ N P
Sbjct: 257 PSGWHHQVYNLDDTISINHNWVNGCNLP 284
>ref|NP_082377.2| jmjC domain-containing protein 8 [Mus musculus].
Length = 271
Score = 58.5 bits (140), Expect = 8e-09
Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 9/241 (3%)
Frame = +2
Query: 323 LSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYS---V 493
++ EF++ Y KPV+L + + + E L + + + N YS V
Sbjct: 58 ITYSEFMQHYAF-LKPVILQGLTDNSKFRALCSRENLLASFGDNIVRLSTANT-YSYQKV 115
Query: 494 KMKMKYYIEYMESTRD-----DSPLYIF-DSSYGEHPKRRKLLEDYTVPKFFTDDLFQYA 655
+ + Y+E + +D + LY F D+++ E L + Y+ P F +
Sbjct: 116 DLPFQEYVEQLLQPQDPASLGNDTLYFFGDNNFTEWAS---LFQHYSPPPF------RLL 166
Query: 656 GEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREE 835
G P Y + + G +G+G+ G ++ ++ G KRW L+P E
Sbjct: 167 GTT--PAYSFGIAG---AGSGVPFHWHGPG-FSEVIYGRKRWFLYPPEKTPEF------- 213
Query: 836 GGNQQDEAITWFNIIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAI 1015
+ + W IYP L +PLE + GE ++ P WWH LNLDT++ I
Sbjct: 214 --HPNKTTLAWLLEIYPSLALSA-----RPLECTIQAGEVLYFPDRWWHATLNLDTSVFI 266
Query: 1016 T 1018
+
Sbjct: 267 S 267
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,808,076
Number of extensions: 1032949
Number of successful extensions: 4725
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4663
Number of HSP's successfully gapped: 4
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008942
(1056 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074930.1| bifunctional arginine demethylase and lysyl-... 617 e-177
Alignment gi|NP_055982.2| bifunctional arginine demethylase and lysyl-hyd... 617 e-177
Alignment gi|NP_001154937.1| jmjC domain-containing protein 4 isoform 2 [... 86 4e-17
Alignment gi|NP_075383.2| jmjC domain-containing protein 4 isoform 1 [Hom... 86 4e-17
Alignment gi|NP_001005920.2| jmjC domain-containing protein 8 [Homo sapie... 67 3e-11
>ref|NP_001074930.1| bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 isoform
1 [Homo sapiens].
Length = 414
Score = 617 bits (1591), Expect = e-177
Identities = 290/297 (97%), Positives = 294/297 (98%)
Frame = +2
Query: 164 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFPLNPAAVADNVERADALQLSVEEFV 343
MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESF L+PAAVADNVERADALQLSVEEFV
Sbjct: 1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV 60
Query: 344 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 523
ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
Sbjct: 61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120
Query: 524 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYTVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 703
MESTRDDSPLYIFDSSYGEHPKRRKLLEDY VPKFFTDDLFQYAGEKRRPPYRWFVMGPP
Sbjct: 121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 180
Query: 704 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY 883
RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTR+EGGNQQDEAITWFN+IY
Sbjct: 181 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIY 240
Query: 884 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFARNTNFPVV 1054
PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFA +TNFPVV
Sbjct: 241 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 297
>ref|NP_055982.2| bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 isoform
2 [Homo sapiens].
Length = 403
Score = 617 bits (1591), Expect = e-177
Identities = 290/297 (97%), Positives = 294/297 (98%)
Frame = +2
Query: 164 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFPLNPAAVADNVERADALQLSVEEFV 343
MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESF L+PAAVADNVERADALQLSVEEFV
Sbjct: 1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV 60
Query: 344 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 523
ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
Sbjct: 61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120
Query: 524 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYTVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 703
MESTRDDSPLYIFDSSYGEHPKRRKLLEDY VPKFFTDDLFQYAGEKRRPPYRWFVMGPP
Sbjct: 121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 180
Query: 704 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIY 883
RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTR+EGGNQQDEAITWFN+IY
Sbjct: 181 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIY 240
Query: 884 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFARNTNFPVV 1054
PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFA +TNFPVV
Sbjct: 241 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 297
>ref|NP_001154937.1| jmjC domain-containing protein 4 isoform 2 [Homo sapiens].
Length = 447
Score = 86.3 bits (212), Expect = 4e-17
Identities = 81/263 (30%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Frame = +2
Query: 326 SVEEFVERYERPYKPVVLLNA-QEGWSAQEKWT-------LERLKRKYRNQKF---KCG- 469
S +FV + P P V +A +GW ++ +W + L R Y + CG
Sbjct: 86 SYADFVRGFLLPNLPCVFSSAFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCGV 145
Query: 470 -EDNDGYSVKMKMKYYIEYMESTRD---DSP---LYIFDSSYGEHPKRRKLLED-YTVPK 625
E N M ++ YI Y + SP LY+ D H R +ED +T+P
Sbjct: 146 QEYNSNPKEHMTLRDYITYWKEYIQAGYSSPRGCLYLKDW----HLCRDFPVEDVFTLPV 201
Query: 626 FFTDD-LFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTST 802
+F+ D L ++ YR+ GP S + H D + +W+ V G K+W LFP
Sbjct: 202 YFSSDWLNEFWDALDVDDYRFVYAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQ 261
Query: 803 PRELIKVTREEGGNQQDEAIT---WFNIIYPRTQLPTWPPEFKPLEILQKPGETVFVPGG 973
L R+ GN + + ++PR QL PLEI Q+ GE VFVP G
Sbjct: 262 EEAL----RDRHGNLPYDVTSPALCDTHLHPRNQLAG-----PPLEITQEAGEMVFVPSG 312
Query: 974 WWHVVLNLDTTIAITQNFARNTN 1042
W H V NLD TI+I N+ N
Sbjct: 313 WHHQVHNLDDTISINHNWVNGFN 335
>ref|NP_075383.2| jmjC domain-containing protein 4 isoform 1 [Homo sapiens].
Length = 463
Score = 86.3 bits (212), Expect = 4e-17
Identities = 81/263 (30%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Frame = +2
Query: 326 SVEEFVERYERPYKPVVLLNA-QEGWSAQEKWT-------LERLKRKYRNQKF---KCG- 469
S +FV + P P V +A +GW ++ +W + L R Y + CG
Sbjct: 86 SYADFVRGFLLPNLPCVFSSAFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCGV 145
Query: 470 -EDNDGYSVKMKMKYYIEYMESTRD---DSP---LYIFDSSYGEHPKRRKLLED-YTVPK 625
E N M ++ YI Y + SP LY+ D H R +ED +T+P
Sbjct: 146 QEYNSNPKEHMTLRDYITYWKEYIQAGYSSPRGCLYLKDW----HLCRDFPVEDVFTLPV 201
Query: 626 FFTDD-LFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTST 802
+F+ D L ++ YR+ GP S + H D + +W+ V G K+W LFP
Sbjct: 202 YFSSDWLNEFWDALDVDDYRFVYAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQ 261
Query: 803 PRELIKVTREEGGNQQDEAIT---WFNIIYPRTQLPTWPPEFKPLEILQKPGETVFVPGG 973
L R+ GN + + ++PR QL PLEI Q+ GE VFVP G
Sbjct: 262 EEAL----RDRHGNLPYDVTSPALCDTHLHPRNQLAG-----PPLEITQEAGEMVFVPSG 312
Query: 974 WWHVVLNLDTTIAITQNFARNTN 1042
W H V NLD TI+I N+ N
Sbjct: 313 WHHQVHNLDDTISINHNWVNGFN 335
>ref|NP_001005920.2| jmjC domain-containing protein 8 [Homo sapiens].
Length = 285
Score = 67.0 bits (162), Expect = 3e-11
Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 12/262 (4%)
Frame = +2
Query: 269 PLNPAAVADN----VERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLK 436
P P AVA+ VER L+ EFV++Y +PV+L + + + +RL
Sbjct: 52 PGGPGAVAEEERCTVERR--ADLTYAEFVQQYAF-VRPVILQGLTDNSRFRALCSRDRLL 108
Query: 437 RKYRNQKFKCGEDN--DGYSVKMKMKYYIEYMESTRD-----DSPLYIF-DSSYGEHPKR 592
+ ++ + N + V + + Y+E + +D + LY F D+++ E
Sbjct: 109 ASFGDRVVRLSTANTYSYHKVDLPFQEYVEQLLHPQDPTSLGNDTLYFFGDNNFTEWAS- 167
Query: 593 RKLLEDYTVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGH 772
L Y+ P F L A P Y + + G +G+G+ G ++ ++ G
Sbjct: 168 --LFRHYSPPPF---GLLGTA-----PAYSFGIAG---AGSGVPFHWHGPG-YSEVIYGR 213
Query: 773 KRWCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIYPRTQLPTWPPEFKPLEILQKPGE 952
KRW L+P E + + W YP PP +PLE + GE
Sbjct: 214 KRWFLYPPEKTPEF---------HPNKTTLAWLRDTYPAL-----PPSARPLECTIRAGE 259
Query: 953 TVFVPGGWWHVVLNLDTTIAIT 1018
++ P WWH LNLDT++ I+
Sbjct: 260 VLYFPDRWWHATLNLDTSVFIS 281
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,664,365
Number of extensions: 1251427
Number of successful extensions: 6088
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6000
Number of HSP's successfully gapped: 5
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008942
(1056 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 777 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 777 bits (392), Expect = 0.0
Identities = 392/392 (100%)
Strand = Plus / Plus
Query: 292 ggacaatgtggaacgggcagacgccttacagctgtcggtggaagagttcgtggagcgata 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661760 ggacaatgtggaacgggcagacgccttacagctgtcggtggaagagttcgtggagcgata 4661819
Query: 352 tgaaagaccttataagcccgtggttctgctgaatgcccaagagggctggtcggcgcagga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661820 tgaaagaccttataagcccgtggttctgctgaatgcccaagagggctggtcggcgcagga 4661879
Query: 412 gaagtggactttggagcgcctcaagaggaaataccggaaccagaagttcaagtgcggtga 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661880 gaagtggactttggagcgcctcaagaggaaataccggaaccagaagttcaagtgcggtga 4661939
Query: 472 ggataatgatggctactcggtgaagatgaagatgaaatactacatcgagtacatggagag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661940 ggataatgatggctactcggtgaagatgaagatgaaatactacatcgagtacatggagag 4661999
Query: 532 cacgagagatgacagtcccctttacatctttgacagcagctacggggagcaccccaaaag 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4662000 cacgagagatgacagtcccctttacatctttgacagcagctacggggagcaccccaaaag 4662059
Query: 592 aaggaaacttctggaagactacacggtgcccaagtttttcaccgatgacctcttccagta 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4662060 aaggaaacttctggaagactacacggtgcccaagtttttcaccgatgacctcttccagta 4662119
Query: 652 tgcgggggagaagcgcaggcccccttacaggt 683
||||||||||||||||||||||||||||||||
Sbjct: 4662120 tgcgggggagaagcgcaggcccccttacaggt 4662151
Score = 581 bits (293), Expect = e-163
Identities = 293/293 (100%)
Strand = Plus / Plus
Query: 1 ggtggttggggagtgaatcttctggaaggcggctttaaaggcgccgggcccgagcgaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4660978 ggtggttggggagtgaatcttctggaaggcggctttaaaggcgccgggcccgagcgaagg 4661037
Query: 61 gcattttggtactgccgtcgccggggccggggagggggcgcgttggtggcaggaagcggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661038 gcattttggtactgccgtcgccggggccggggagggggcgcgttggtggcaggaagcggg 4661097
Query: 121 ctgcgccgaggtcgtcgcggaaccagctggtgaccctcgcaggatgaaccacaagagcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661098 ctgcgccgaggtcgtcgcggaaccagctggtgaccctcgcaggatgaaccacaagagcaa 4661157
Query: 181 gaagcggatccgcgaggccaagcggagtgcgcggccggagctgaaggactcgctggactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661158 gaagcggatccgcgaggccaagcggagtgcgcggccggagctgaaggactcgctggactg 4661217
Query: 241 gactcggcataactactacgaaagcttcccgctgaacccagcggccgtggcgg 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661218 gactcggcataactactacgaaagcttcccgctgaacccagcggccgtggcgg 4661270
Score = 551 bits (278), Expect = e-154
Identities = 278/278 (100%)
Strand = Plus / Plus
Query: 692 atggggcctccacgctctggaaccggaattcacatcgaccccctgggaaccagcgcctgg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4662913 atggggcctccacgctctggaaccggaattcacatcgaccccctgggaaccagcgcctgg 4662972
Query: 752 aatgccttagttcagggtcacaagcgctggtgcttattccccaccagcacgccccgggag 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4662973 aatgccttagttcagggtcacaagcgctggtgcttattccccaccagcacgccccgggag 4663032
Query: 812 ctcatcaaggtgacccgtgaagaaggtgggaaccagcaagatgaagctattacctggttt 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4663033 ctcatcaaggtgacccgtgaagaaggtgggaaccagcaagatgaagctattacctggttt 4663092
Query: 872 aacatcatctacccgcgaacacagcttccgacctggccacccgaattcaaacccctggaa 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4663093 aacatcatctacccgcgaacacagcttccgacctggccacccgaattcaaacccctggaa 4663152
Query: 932 atcttacaaaagccaggagagactgtctttgtaccagg 969
||||||||||||||||||||||||||||||||||||||
Sbjct: 4663153 atcttacaaaagccaggagagactgtctttgtaccagg 4663190
Score = 165 bits (83), Expect = 6e-38
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 966 caggaggctggtggcacgtcgtcctcaatcttgataccaccattgccatcacccagaact 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4664227 caggaggctggtggcacgtcgtcctcaatcttgataccaccattgccatcacccagaact 4664286
Query: 1026 ttgcccgcaacaccaacttccctgttgtctg 1056
||||| ||| |||||||||||||||||||||
Sbjct: 4664287 ttgccagcagcaccaacttccctgttgtctg 4664317
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,878,720
Number of extensions: 117
Number of successful extensions: 117
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 4
Length of query: 1056
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1035
Effective length of database: 2,808,413,156
Effective search space: 2906707616460
Effective search space used: 2906707616460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)