Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008955
(1459 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015580.1| sodium-coupled neutral amino acid transporte... 677 0.0
Alignment gi|XP_001256144.1| PREDICTED: Solute carrier family 38, member ... 439 e-123
Alignment gi|NP_001035576.1| sodium-coupled neutral amino acid transporte... 402 e-112
Alignment gi|NP_001075893.1| sodium-coupled neutral amino acid transporte... 309 4e-84
Alignment gi|NP_001192872.1| sodium-coupled neutral amino acid transporte... 292 6e-79
Alignment gi|XP_002687366.1| PREDICTED: solute carrier family 38, member ... 292 6e-79
Alignment gi|XP_001790673.2| PREDICTED: solute carrier family 38, member ... 262 5e-70
Alignment gi|XP_002687367.1| PREDICTED: solute carrier family 38, member ... 261 1e-69
Alignment gi|NP_001026930.1| putative sodium-coupled neutral amino acid t... 82 9e-16
Alignment gi|XP_002691069.1| PREDICTED: solute carrier family 38, member ... 67 5e-11
>ref|NP_001015580.1| sodium-coupled neutral amino acid transporter 5 [Bos taurus].
Length = 478
Score = 677 bits (1746), Expect = 0.0
Identities = 356/466 (76%), Positives = 361/466 (77%), Gaps = 1/466 (0%)
Frame = +1
Query: 58 LRGAGRMELQDPKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSV 237
+ A MELQDPKMNGALP AV+ QE EGFLPSHSP+PGRKP QFMDFEGKTSFGMSV
Sbjct: 3 ISSAEGMELQDPKMNGALPGNAVE--QEHEGFLPSHSPSPGRKPAQFMDFEGKTSFGMSV 60
Query: 238 FNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQL 417
FNLSNAIMGSGILGLAYAMAHTG+ SSYSIHLLLTCAGVVGIRAYEQL
Sbjct: 61 FNLSNAIMGSGILGLAYAMAHTGILLFLALLLCIALLSSYSIHLLLTCAGVVGIRAYEQL 120
Query: 418 GQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFLKGNXXX 597
GQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVI TFLDMDPEGDWFLKGN
Sbjct: 121 GQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIATFLDMDPEGDWFLKGNLLI 180
Query: 598 XXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKG 777
ALMRH CMLFFLISVIYKKFQLGC +GHN TAVESK
Sbjct: 181 IIVSVLIILPLALMRHLGYLGYTSGLSLTCMLFFLISVIYKKFQLGCTVGHNGTAVESKS 240
Query: 778 PSSLPTQGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVA 957
SLP GLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVA
Sbjct: 241 SPSLPIHGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVA 300
Query: 958 NVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQQDXXXXXXXXXXXXXXXXXXXXXX 1137
NVSIGAMFCMY LTATFGYLTFYSSVEAEMLHMYSQ D
Sbjct: 301 NVSIGAMFCMYGLTATFGYLTFYSSVEAEMLHMYSQHDLLILCVRLAVLLAVTLTVPVVL 360
Query: 1138 FPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIF 1317
FPIRRALQQLLFPSKAFSWPRH CVPTIRDIFGVIGSTSAPSLIF
Sbjct: 361 FPIRRALQQLLFPSKAFSWPRHVAIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIF 420
Query: 1318 ILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVLSWHQS-RFMFA 1452
ILPSIFYLRIVPSEVEPLYSWPKI ALCFGVLGVL S FMFA
Sbjct: 421 ILPSIFYLRIVPSEVEPLYSWPKIQALCFGVLGVLFMAISLGFMFA 466
>ref|XP_001256144.1| PREDICTED: Solute carrier family 38, member 5-like, partial [Bos
taurus].
Length = 301
Score = 439 bits (1130), Expect = e-123
Identities = 224/278 (80%), Positives = 227/278 (81%)
Frame = +1
Query: 196 FMDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLL 375
+ FEGKTSFGMSVFNLSNAIMGSGILGLAYAMAHTG+ SSYSIHLLL
Sbjct: 16 YQQFEGKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGILLFLALLLCIALLSSYSIHLLL 75
Query: 376 TCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDM 555
TCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVI TFLDM
Sbjct: 76 TCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIATFLDM 135
Query: 556 DPEGDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLG 735
DPEGDWFLKGN ALMRH CMLFFLISVIYKKFQLG
Sbjct: 136 DPEGDWFLKGNLLIIIVSVLIILPLALMRHLGYLGYTSGLSLTCMLFFLISVIYKKFQLG 195
Query: 736 CVIGHNETAVESKGPSSLPTQGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYT 915
C +GHN TAVESK SLP GLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYT
Sbjct: 196 CTVGHNGTAVESKSSPSLPIHGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYT 255
Query: 916 ELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFYS 1029
ELCRPSKRRMQAVANVSIGAMFCMY LTATFGYLTFYS
Sbjct: 256 ELCRPSKRRMQAVANVSIGAMFCMYGLTATFGYLTFYS 293
>ref|NP_001035576.1| sodium-coupled neutral amino acid transporter 3 [Bos taurus].
Length = 504
Score = 402 bits (1033), Expect = e-112
Identities = 236/480 (49%), Positives = 281/480 (58%), Gaps = 13/480 (2%)
Frame = +1
Query: 22 QSPIPELLPLQKLRGAGRMELQDPKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFM 201
Q+ + EL+P K G + + P G E EGFLP +P ++P F
Sbjct: 6 QTEMVELVPNGK-HLEGLLPVATPTAGSQRVEGPGRSCVEGEGFLPK---SPSKEP-HFT 60
Query: 202 DFEGKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTC 381
DFEGKTSFGMSVFNLSNAIMGSGILGLAYAMA+TG+ SSYSIHLLL
Sbjct: 61 DFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKS 120
Query: 382 AGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDM-D 558
+G+VGIRAYEQLG RA G GK+ A I L N+GAMSSYL+IIKSELPLVI TFL + D
Sbjct: 121 SGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLHLED 180
Query: 559 PEGDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC 738
DW+ GN ALMR CM+FFLI+VIYKKF + C
Sbjct: 181 WTSDWYTNGNYLVILVSIVVILPLALMRQLGYLGYSSGFSLSCMMFFLIAVIYKKFHVPC 240
Query: 739 VIGHNETAVES--------KGPSSLPTQGLNTS-CEAQMFTADSQMFYTVPIMAFAFVCH 891
+ N T V S K + L + + + C FT ++Q YT+PIMAFAFVCH
Sbjct: 241 PLSPNATNVTSNISLVEIDKDEAGLQAKTESGAFCTPSYFTLNTQTAYTIPIMAFAFVCH 300
Query: 892 PEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQQ- 1068
PEVLPIYTEL PSKR+MQ ++N+SI M+ MY L A FGYLTFY VE+E+LH YS+
Sbjct: 301 PEVLPIYTELKDPSKRKMQRISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVD 360
Query: 1069 --DXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXX 1242
D FP+RRALQQ+LFP++ FSW RH
Sbjct: 361 PFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQILFPNREFSWLRHVLIAVVLLTCINL 420
Query: 1243 XXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
P I IFGVIG+TSAP LIFI P+IFY RI+P+E EP S PKI ALCF LG+L
Sbjct: 421 LVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIIPTEKEPARSTPKILALCFAALGIL 480
>ref|NP_001075893.1| sodium-coupled neutral amino acid transporter 2 [Bos taurus].
Length = 506
Score = 309 bits (792), Expect = 4e-84
Identities = 188/458 (41%), Positives = 245/458 (53%), Gaps = 14/458 (3%)
Frame = +1
Query: 91 PKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSG 270
P AL D E + FL + + T F G TSFGMSVFNLSNAI+GSG
Sbjct: 31 PTKQAALKSHYADVDPENQNFLLESNLGKKKYETDF--HPGTTSFGMSVFNLSNAIVGSG 88
Query: 271 ILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKV 450
ILGL+YAMA+TG+ S YS+HLLL A G YEQLG +A G GK+
Sbjct: 89 ILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQLGHKAFGMVGKL 148
Query: 451 VVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDM-DPEGDWFLKGNXXXXXXXXXXXXX 627
+ I + N+GAMSSYLFI+K ELPLVI +++ D G W+L G+
Sbjct: 149 TASGSITMQNIGAMSSYLFIVKYELPLVIQALMNIEDTNGLWYLNGDYLVLLVSLVLILP 208
Query: 628 XALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC------VIGHNETAVESKGPSSL 789
+L+R+ CM+FFLI VI+KKFQ+ C ++ + ++ + L
Sbjct: 209 LSLLRNLGYLGYTSGLSLLCMMFFLIVVIFKKFQISCPAEIAFLVNETVNSSLTQPATFL 268
Query: 790 PTQGLN----TSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVA 957
P G N SC+ + F +SQ Y VPI+ F+FVCHP +LPIY EL S+RRM V+
Sbjct: 269 PDMGFNRTESDSCQPRYFIFNSQTVYAVPILTFSFVCHPAILPIYEELKGRSRRRMMNVS 328
Query: 958 NVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYS---QQDXXXXXXXXXXXXXXXXXXX 1128
+S AMF MY L A FGYLTFY VE+E+LH YS + D
Sbjct: 329 KISFFAMFLMYLLAALFGYLTFYGHVESELLHTYSSVMETDILLLIVRLAVLVAVTLTVP 388
Query: 1129 XXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPS 1308
FPIR ++ LL SK FSW RH VP IRDIFG IG+++A
Sbjct: 389 VVIFPIRSSITHLLCASKEFSWWRHSVITVSILVFTNLLVIFVPNIRDIFGFIGASAAAM 448
Query: 1309 LIFILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
LIFILPS FY+++V + EP+ S KI A+ F + G++
Sbjct: 449 LIFILPSAFYIKLV--KKEPMKSVQKIGAMFFLLSGIV 484
>ref|NP_001192872.1| sodium-coupled neutral amino acid transporter 4 [Bos taurus].
Length = 547
Score = 292 bits (747), Expect = 6e-79
Identities = 183/454 (40%), Positives = 238/454 (52%), Gaps = 50/454 (11%)
Frame = +1
Query: 211 GKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGV 390
G TSFGMS FNLSNAIMGSGILGL+YAMA+TG+ S YS+HLLL A
Sbjct: 73 GTTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAVLSLYSVHLLLKTAKE 132
Query: 391 VGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-G 567
G YE+LG++A G GK+ I + N+GAMSSYLFIIK ELP VI F+ ++ G
Sbjct: 133 GGSLIYEKLGEKAFGWPGKIGAFISITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTG 192
Query: 568 DWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC--- 738
+W+L GN +L+++ CM+FF+ VIYKKFQ+ C
Sbjct: 193 EWYLNGNYLVIFVSVGIILPLSLLKNLGYLGYTSGFSLTCMVFFVSVVIYKKFQIPCPLP 252
Query: 739 VIGH-------NETAV------------------------------ESKGPSSLPTQGL- 804
++ H N T E++ SL G+
Sbjct: 253 ILDHSVGNLTFNNTVPMHVVMLLNNTESSGVNFMMDYTHQNAAGLDENQAKGSLHGSGVE 312
Query: 805 -----NTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSI 969
+ C+ + F +S+ Y +PI+AFAFVCHPEVLPIY+EL S+R+MQ V+NVSI
Sbjct: 313 FEAHSDDKCQPKYFVFNSRTAYAIPILAFAFVCHPEVLPIYSELKDRSRRKMQTVSNVSI 372
Query: 970 GAMFCMYALTATFGYLTFYSSVEAEMLHMYSQQ---DXXXXXXXXXXXXXXXXXXXXXXF 1140
M MY L A FGYLTFY VE E+LH YS+ D F
Sbjct: 373 TGMLVMYLLAALFGYLTFYGEVEDELLHAYSKVYTFDTPLLMVRLAVLMAVTLTVPIVLF 432
Query: 1141 PIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFI 1320
PIR ++ LLFP + FSW RH VPTI+ IFG IG++SA LIFI
Sbjct: 433 PIRTSVTTLLFPKRPFSWIRHFLIAAIIIALNNVLVILVPTIKYIFGFIGASSATMLIFI 492
Query: 1321 LPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
LP++FYL++V + EP S K+ AL F V+G++
Sbjct: 493 LPAVFYLKLV--KKEPFRSPQKVGALIFLVVGII 524
>ref|XP_002687366.1| PREDICTED: solute carrier family 38, member 4 [Bos taurus].
Length = 547
Score = 292 bits (747), Expect = 6e-79
Identities = 183/454 (40%), Positives = 238/454 (52%), Gaps = 50/454 (11%)
Frame = +1
Query: 211 GKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGV 390
G TSFGMS FNLSNAIMGSGILGL+YAMA+TG+ S YS+HLLL A
Sbjct: 73 GTTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAVLSLYSVHLLLKTAKE 132
Query: 391 VGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-G 567
G YE+LG++A G GK+ I + N+GAMSSYLFIIK ELP VI F+ ++ G
Sbjct: 133 GGSLIYEKLGEKAFGWPGKIGAFISITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTG 192
Query: 568 DWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC--- 738
+W+L GN +L+++ CM+FF+ VIYKKFQ+ C
Sbjct: 193 EWYLNGNYLVIFVSVGIILPLSLLKNLGYLGYTSGFSLTCMVFFVSVVIYKKFQIPCPLP 252
Query: 739 VIGH-------NETAV------------------------------ESKGPSSLPTQGL- 804
++ H N T E++ SL G+
Sbjct: 253 ILDHSVGNLTFNNTVPMHVVMLLNNTESSGVNFMMDYTHQNAAGLDENQAKGSLHGSGVE 312
Query: 805 -----NTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSI 969
+ C+ + F +S+ Y +PI+AFAFVCHPEVLPIY+EL S+R+MQ V+NVSI
Sbjct: 313 FEAHSDDKCQPKYFVFNSRTAYAIPILAFAFVCHPEVLPIYSELKDRSRRKMQTVSNVSI 372
Query: 970 GAMFCMYALTATFGYLTFYSSVEAEMLHMYSQQ---DXXXXXXXXXXXXXXXXXXXXXXF 1140
M MY L A FGYLTFY VE E+LH YS+ D F
Sbjct: 373 TGMLVMYLLAALFGYLTFYGEVEDELLHAYSKVYTFDTPLLMVRLAVLMAVTLTVPIVLF 432
Query: 1141 PIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFI 1320
PIR ++ LLFP + FSW RH VPTI+ IFG IG++SA LIFI
Sbjct: 433 PIRTSVTTLLFPKRPFSWIRHFLIAAIIIALNNVLVILVPTIKYIFGFIGASSATMLIFI 492
Query: 1321 LPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
LP++FYL++V + EP S K+ AL F V+G++
Sbjct: 493 LPAVFYLKLV--KKEPFRSPQKVGALIFLVVGII 524
>ref|XP_001790673.2| PREDICTED: solute carrier family 38, member 1 [Bos taurus].
Length = 486
Score = 262 bits (670), Expect = 5e-70
Identities = 168/444 (37%), Positives = 229/444 (51%), Gaps = 3/444 (0%)
Frame = +1
Query: 100 NGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILG 279
NG + + R+ R SH +K ++ G TS GMSVFNLSNAIMGSGILG
Sbjct: 36 NGQINSKFISDRESRRSLTNSHLEK--KKCDDYIP--GTTSLGMSVFNLSNAIMGSGILG 91
Query: 280 LAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVA 459
LA+A+A+TG+ S YSI+LLL C+ G YE+LG++ G GK+V+
Sbjct: 92 LAFALANTGILLFLVLLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKLVIF 151
Query: 460 AVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-GDWFLKGNXXXXXXXXXXXXXXAL 636
L N GAM SYLFI+K+ELP I + + E W++ G L
Sbjct: 152 GATSLQNTGAMLSYLFIVKNELPSAIKFLMGKEEEFSAWYVDGRLLVVVVTFGIILPLCL 211
Query: 637 MRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGH-NETAVESKGPSSLPTQGLNTS 813
+++ CM+FFLI VIYKKF++ C + N T S P
Sbjct: 212 LKNLGYLGYTSGFSLSCMVFFLIVVIYKKFKITCSVPELNSTIPNSTNPD---------M 262
Query: 814 CEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYA 993
C + T +S+ Y +P +AFAFVCHP VLPIY+EL S+++MQ V+N+S AMF MY
Sbjct: 263 CTPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYF 322
Query: 994 LTATFGYLTFYSSVEAEMLHMY-SQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLL 1170
LTA FGYLTFY +V++++LH Y S+ D F +R +L +L
Sbjct: 323 LTAIFGYLTFYGNVQSDLLHKYQSKNDILILTVRLAVIMAVILTVPVLFFTVRSSLFELA 382
Query: 1171 FPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIV 1350
+K F+ RH +P+++D FGV+G TSA LIFILPS YL+I
Sbjct: 383 KKTK-FNLCRHVLVTILLLVIINLLVIFIPSMKDXFGVVGVTSANMLIFILPSSLYLKIT 441
Query: 1351 PSEVEPLYSWPKIXALCFGVLGVL 1422
+ + +I A F LGVL
Sbjct: 442 SQDGDK--GTQQIWAALFLGLGVL 463
>ref|XP_002687367.1| PREDICTED: solute carrier family 38, member 1 [Bos taurus].
Length = 486
Score = 261 bits (667), Expect = 1e-69
Identities = 168/444 (37%), Positives = 229/444 (51%), Gaps = 3/444 (0%)
Frame = +1
Query: 100 NGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILG 279
NG + + R+ R SH +K ++ G TS GMSVFNLSNAIMGSGILG
Sbjct: 36 NGQINSKFISDRESRRSLTNSHLEK--KKCDDYIP--GTTSLGMSVFNLSNAIMGSGILG 91
Query: 280 LAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVA 459
LA+A+A+TG+ S YSI+LLL C+ G YE+LG++ G GK+V+
Sbjct: 92 LAFALANTGILLFLVLLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKLVIF 151
Query: 460 AVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-GDWFLKGNXXXXXXXXXXXXXXAL 636
L N GAM SYLFI+K+ELP I + + E W++ G L
Sbjct: 152 GATSLQNTGAMLSYLFIVKNELPSAIKFLMGKEEEFSAWYVDGRLLVVVVTFGIILPLCL 211
Query: 637 MRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGH-NETAVESKGPSSLPTQGLNTS 813
+++ CM+FFLI VIYKKF++ C + N T S P
Sbjct: 212 LKNLGYLGYTSGFSLSCMVFFLIVVIYKKFKITCSVPELNSTIPNSTNPD---------M 262
Query: 814 CEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYA 993
C + T +S+ Y +P +AFAFVCHP VLPIY+EL S+++MQ V+N+S AMF MY
Sbjct: 263 CTPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYF 322
Query: 994 LTATFGYLTFYSSVEAEMLHMY-SQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLL 1170
LTA FGYLTFY +V++++LH Y S+ D F +R +L +L
Sbjct: 323 LTAIFGYLTFYGNVQSDLLHKYQSKNDILILTVRLAVIMAVILTVPVLFFTVRSSLFELA 382
Query: 1171 FPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIV 1350
+K F+ R +P+++DIFGV+G TSA LIFILPS YL+I
Sbjct: 383 KKTK-FNLCRQVLVTILLLVIINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKIT 441
Query: 1351 PSEVEPLYSWPKIXALCFGVLGVL 1422
+ + +I A F LGVL
Sbjct: 442 SQDGDK--GTQQIWAALFLGLGVL 463
>ref|NP_001026930.1| putative sodium-coupled neutral amino acid transporter 11 [Bos
taurus].
Length = 463
Score = 82.4 bits (202), Expect = 9e-16
Identities = 94/407 (23%), Positives = 148/407 (36%), Gaps = 1/407 (0%)
Frame = +1
Query: 130 YRQEREGFLPSHSPAPGRKPTQFMDFEGKTSF-GMSVFNLSNAIMGSGILGLAYAMAHTG 306
+R +RE + H +GKT +VFN+ N+I+GSGI+GL Y+M G
Sbjct: 15 HRDDRETLVSEHK------------HKGKTCRQSAAVFNVVNSIIGSGIIGLPYSMKQAG 62
Query: 307 VXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVG 486
+ +S+ LL+ A + G Y+ L R G G ++++ + L+
Sbjct: 63 FPLGILLLFWVSYVTDFSLILLIKGAALSGTDTYQSLVNRTFGFPGYLLLSVLQFLYPFI 122
Query: 487 AMSSYLFIIKSELPLVIGTFLDMDPEGDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXX 666
AM SY I L V +DPE + + + +L R
Sbjct: 123 AMISYNIITGDTLSKVFQRIPGVDPE-NLLIGRHLIIVLSTVVFTLPLSLYRDIAKLGK- 180
Query: 667 XXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPTQGLNTSCEAQMFTADSQ 846
LIS + LG V+ S GP T+ +A +F A
Sbjct: 181 ---------ISLISTVLTTLILGIVVARG----VSLGPHIPKTE------DAWIF-AKPN 220
Query: 847 MFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFY 1026
V +M+FAF+CH +Y L P+ + + +VS + L AT GYLTF
Sbjct: 221 AVQAVGVMSFAFICHHNCFLVYGSLEEPTVAKWSHIIHVSTLISVFISILFATCGYLTFT 280
Query: 1027 SSVEAEMLHMYSQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHX 1206
+ ++ Y + D F R + + F S H
Sbjct: 281 GYTQGDLFENYCRNDDLVTFGRFCYGVTVILTYPIECFVTREVIANVFFGGN-LSSVCHI 339
Query: 1207 XXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRI 1347
+ + + + G A LIFI+PS YL++
Sbjct: 340 IVTVVIITVATLVSLLIDCLGIVLELNGVLCAAPLIFIIPSACYLKL 386
>ref|XP_002691069.1| PREDICTED: solute carrier family 38, member 3-like [Bos taurus].
Length = 104
Score = 66.6 bits (161), Expect = 5e-11
Identities = 33/53 (62%), Positives = 37/53 (69%)
Frame = +1
Query: 220 SFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLT 378
SFG SVFNL NAIMGSGILGLAY MAHTG+ +SYS+HLLL+
Sbjct: 46 SFGFSVFNLMNAIMGSGILGLAYVMAHTGILGFSFLLLIVALLASYSVHLLLS 98
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,363,223
Number of extensions: 1877920
Number of successful extensions: 7972
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7879
Number of HSP's successfully gapped: 14
Length of query: 486
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 380
Effective length of database: 14,174,046
Effective search space: 5386137480
Effective search space used: 5386137480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008955
(1459 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855349.1| PREDICTED: similar to amino acid transport syst... 463 e-130
Alignment gi|XP_533820.1| PREDICTED: similar to System N amino acid trans... 392 e-109
Alignment gi|XP_864025.1| PREDICTED: similar to solute carrier family 38,... 306 4e-83
Alignment gi|XP_863986.1| PREDICTED: similar to solute carrier family 38,... 305 9e-83
Alignment gi|XP_864000.1| PREDICTED: similar to solute carrier family 38,... 303 2e-82
Alignment gi|XP_543722.2| PREDICTED: similar to solute carrier family 38,... 302 5e-82
Alignment gi|XP_864042.1| PREDICTED: similar to solute carrier family 38,... 300 2e-81
Alignment gi|XP_543721.2| PREDICTED: similar to solute carrier family 38,... 293 2e-79
Alignment gi|XP_534827.2| PREDICTED: similar to solute carrier family 38,... 262 7e-70
Alignment gi|XP_852226.1| PREDICTED: similar to N system amino acid trans... 236 4e-62
>ref|XP_855349.1| PREDICTED: similar to amino acid transport system N2 [Canis
familiaris].
Length = 709
Score = 463 bits (1192), Expect = e-130
Identities = 263/440 (59%), Positives = 280/440 (63%)
Frame = +1
Query: 76 MELQDPKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNA 255
MELQDPK+NGALP A+ YRQEREGFLPSH PAPGRKP +FMDFEGKTSFGMSVFNLSNA
Sbjct: 294 MELQDPKINGALPADALGYRQEREGFLPSHPPAPGRKPIEFMDFEGKTSFGMSVFNLSNA 353
Query: 256 IMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALG 435
IMGSGILGLAYAMAHTG+ SSYSIHLLLTCAGVVGIRAYEQLGQRALG
Sbjct: 354 IMGSGILGLAYAMAHTGILFFLALLLCIALLSSYSIHLLLTCAGVVGIRAYEQLGQRALG 413
Query: 436 PAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFLKGNXXXXXXXXX 615
P GKVVVAAVICLHNVGAMSSYLFII ELPLVIGTFLDMDPEG WFLKGN
Sbjct: 414 PVGKVVVAAVICLHNVGAMSSYLFIINPELPLVIGTFLDMDPEGGWFLKGNLLIIIVSVL 473
Query: 616 XXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPT 795
ALMRH CMLFFLISVIYKKFQLGC + NETAV+SK PS LP
Sbjct: 474 IILPLALMRHLGYLGYTSGLSLTCMLFFLISVIYKKFQLGCAVSFNETAVDSKNPSGLPI 533
Query: 796 QGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGA 975
QGLN SC ++QMF TV F V + + +C P
Sbjct: 534 QGLNRSC-------EAQMF-TVDSQMFYTV----PIMAFAFVCHPE-------------- 567
Query: 976 MFCMYALTATFGYLTFYSSVEAEMLHMYSQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRA 1155
+ +Y Y + E + + D IRRA
Sbjct: 568 VLPIYTELCRIRY-------KCEWIEWGDRNDQMEGVACTDGDAE-----------IRRA 609
Query: 1156 LQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIF 1335
LQQLLFPS+ FSWPRH CVPTIRDIFGVIGSTSAPSLIFILPSIF
Sbjct: 610 LQQLLFPSRDFSWPRHVAIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIFILPSIF 669
Query: 1336 YLRIVPSEVEPLYSWPKIXA 1395
YLRIVPSEVEPLYSWPKI A
Sbjct: 670 YLRIVPSEVEPLYSWPKIQA 689
>ref|XP_533820.1| PREDICTED: similar to System N amino acid transporter 1 (SN1)
(N-system amino acid transporter 1) (Solute carrier
family 38, member 3) [Canis familiaris].
Length = 504
Score = 392 bits (1006), Expect = e-109
Identities = 233/487 (47%), Positives = 284/487 (58%), Gaps = 13/487 (2%)
Frame = +1
Query: 1 VPPPAGSQSPIPELLPLQKLRGAGRMELQDPKMNGALPRGAVDYRQEREGFLPSHSPAPG 180
VP S+ +P P+ AG ++ P+ R V E EGFL SP+
Sbjct: 13 VPNGKHSEGLLPAPTPM-----AGHQRVEGPR------RSCV----EGEGFLQK-SPS-- 54
Query: 181 RKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYS 360
K F DFEGKTSFGMSVFNLSNAIMGSGILGLAYAMA+TG+ SSYS
Sbjct: 55 -KEQHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYS 113
Query: 361 IHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIG 540
IHLLL +G+VGIRAYEQLG RA G GK+ A I L N+GAMSSYL+IIKSELPLVI
Sbjct: 114 IHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQ 173
Query: 541 TFLDMDPE-GDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIY 717
TFL+++ + DW++ GN ALMR CM+FFLI+VIY
Sbjct: 174 TFLNLEEQTSDWYMNGNYLVILVSITVILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIY 233
Query: 718 KKFQLGC--------VIGHNETAVESKGPSSLPTQGLNTS-CEAQMFTADSQMFYTVPIM 870
KKF + C + G+ +K + L + T+ C FT +SQ YT+PIM
Sbjct: 234 KKFHVPCPLPLNFANITGNVSLIEVTKEEAQLQVETEATALCTPSYFTLNSQTAYTIPIM 293
Query: 871 AFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEML 1050
AFAFVCHPEVLPIYTEL PSK++MQ ++N+SI M+ MY L A FGYLTFY VE+E+L
Sbjct: 294 AFAFVCHPEVLPIYTELKDPSKKKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELL 353
Query: 1051 HMYSQQ---DXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXX 1221
H YS+ D FP+RRA+QQ+LF ++ F+W RH
Sbjct: 354 HTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRAIQQMLFKNQEFNWLRHTLIAIG 413
Query: 1222 XXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXALC 1401
P I IFGVIG+TSAP LIFI P+IFY RI+P+E EP S PKI ALC
Sbjct: 414 LLTCINLLVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIMPTEKEPAKSTPKILALC 473
Query: 1402 FGVLGVL 1422
F VLG+L
Sbjct: 474 FAVLGLL 480
>ref|XP_864025.1| PREDICTED: similar to solute carrier family 38, member 4 isoform 5
[Canis familiaris].
Length = 504
Score = 306 bits (783), Expect = 4e-83
Identities = 180/412 (43%), Positives = 236/412 (57%), Gaps = 8/412 (1%)
Frame = +1
Query: 211 GKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGV 390
G TSFGMS FNLSNAIMGSGILGL+YAMA+TG+ S YS+HLLL A
Sbjct: 74 GTTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAILSLYSVHLLLKTAKE 133
Query: 391 VGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-G 567
G YE+LG++A G GK+ I + N+GAMSSYLFIIK ELP VI F+ ++ G
Sbjct: 134 GGSLIYEKLGEKAFGWPGKIGAFVSITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTG 193
Query: 568 DWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC--- 738
+W+L GN +L+++ CM+FF+ VIYKKFQ+ C
Sbjct: 194 EWYLNGNYLVIFVSLGIILPLSLLKNLGYLGYTSGFSLTCMVFFVSVVIYKKFQIPCPLP 253
Query: 739 VIGHNETAVESKGPSSLPT-QGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYT 915
V+ HN + ++LP ++ C+ + F +S+ Y +PI+AFAFVCHPEVLPIY+
Sbjct: 254 VLDHNVGNLTFN--NTLPVHMVIDDKCQPKYFVFNSRTAYAIPILAFAFVCHPEVLPIYS 311
Query: 916 ELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQQ---DXXXXX 1086
EL S+R+MQ V+N+SI M MY L A FGYLTFY VE E+LH YS+ D
Sbjct: 312 ELKDRSRRKMQTVSNISITGMLIMYLLAALFGYLTFYGEVEDELLHAYSKVYTFDTPLLM 371
Query: 1087 XXXXXXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTI 1266
FPIR ++ LLFP + FSW RH VPTI
Sbjct: 372 VRLAVLVAVTLTVPIVLFPIRTSVTTLLFPKRPFSWIRHFLIAAILLALNNVLVILVPTI 431
Query: 1267 RDIFGVIGSTSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
+ IFG IG++SA LIFILP++FYL++V + EP S K+ AL F V+G++
Sbjct: 432 KYIFGFIGASSATMLIFILPAVFYLKLV--KKEPFRSPQKVGALIFLVVGII 481
>ref|XP_863986.1| PREDICTED: similar to solute carrier family 38, member 4 isoform 3
[Canis familiaris].
Length = 515
Score = 305 bits (780), Expect = 9e-83
Identities = 183/423 (43%), Positives = 238/423 (56%), Gaps = 19/423 (4%)
Frame = +1
Query: 211 GKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGV 390
G TSFGMS FNLSNAIMGSGILGL+YAMA+TG+ S YS+HLLL A
Sbjct: 74 GTTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAILSLYSVHLLLKTAKE 133
Query: 391 VGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-G 567
G YE+LG++A G GK+ I + N+GAMSSYLFIIK ELP VI F+ ++ G
Sbjct: 134 GGSLIYEKLGEKAFGWPGKIGAFVSITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTG 193
Query: 568 DWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC--- 738
+W+L GN +L+++ CM+FF+ VIYKKFQ+ C
Sbjct: 194 EWYLNGNYLVIFVSLGIILPLSLLKNLGYLGYTSGFSLTCMVFFVSVVIYKKFQIPCPLP 253
Query: 739 VIGHN------ETAVESKGPSSLPTQGL------NTSCEAQMFTADSQMFYTVPIMAFAF 882
V+ HN + +KG SL G+ + C+ + F +S+ Y +PI+AFAF
Sbjct: 254 VLDHNVGNLTFNNTLPAKG--SLHGSGVEYEAHSDDKCQPKYFVFNSRTAYAIPILAFAF 311
Query: 883 VCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYS 1062
VCHPEVLPIY+EL S+R+MQ V+N+SI M MY L A FGYLTFY VE E+LH YS
Sbjct: 312 VCHPEVLPIYSELKDRSRRKMQTVSNISITGMLIMYLLAALFGYLTFYGEVEDELLHAYS 371
Query: 1063 QQ---DXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXX 1233
+ D FPIR ++ LLFP + FSW RH
Sbjct: 372 KVYTFDTPLLMVRLAVLVAVTLTVPIVLFPIRTSVTTLLFPKRPFSWIRHFLIAAILLAL 431
Query: 1234 XXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXALCFGVL 1413
VPTI+ IFG IG++SA LIFILP++FYL++V + EP S K+ AL F V+
Sbjct: 432 NNVLVILVPTIKYIFGFIGASSATMLIFILPAVFYLKLV--KKEPFRSPQKVGALIFLVV 489
Query: 1414 GVL 1422
G++
Sbjct: 490 GII 492
>ref|XP_864000.1| PREDICTED: similar to solute carrier family 38, member 4 isoform 4
[Canis familiaris].
Length = 501
Score = 303 bits (777), Expect = 2e-82
Identities = 177/408 (43%), Positives = 230/408 (56%), Gaps = 4/408 (0%)
Frame = +1
Query: 211 GKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGV 390
G TSFGMS FNLSNAIMGSGILGL+YAMA+TG+ S YS+HLLL A
Sbjct: 74 GTTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAILSLYSVHLLLKTAKE 133
Query: 391 VGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-G 567
G YE+LG++A G GK+ I + N+GAMSSYLFIIK ELP VI F+ ++ G
Sbjct: 134 GGSLIYEKLGEKAFGWPGKIGAFVSITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTG 193
Query: 568 DWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIG 747
+W+L GN +L+++ CM+FF+ VIYKKFQ+ C +
Sbjct: 194 EWYLNGNYLVIFVSLGIILPLSLLKNLGYLGYTSGFSLTCMVFFVSVVIYKKFQIPCPL- 252
Query: 748 HNETAVESKGPSSLPTQGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCR 927
N+ G + C+ + F +S+ Y +PI+AFAFVCHPEVLPIY+EL
Sbjct: 253 PNQAKGSLHGSGVEYEAHSDDKCQPKYFVFNSRTAYAIPILAFAFVCHPEVLPIYSELKD 312
Query: 928 PSKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQQ---DXXXXXXXXX 1098
S+R+MQ V+N+SI M MY L A FGYLTFY VE E+LH YS+ D
Sbjct: 313 RSRRKMQTVSNISITGMLIMYLLAALFGYLTFYGEVEDELLHAYSKVYTFDTPLLMVRLA 372
Query: 1099 XXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIF 1278
FPIR ++ LLFP + FSW RH VPTI+ IF
Sbjct: 373 VLVAVTLTVPIVLFPIRTSVTTLLFPKRPFSWIRHFLIAAILLALNNVLVILVPTIKYIF 432
Query: 1279 GVIGSTSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
G IG++SA LIFILP++FYL++V + EP S K+ AL F V+G++
Sbjct: 433 GFIGASSATMLIFILPAVFYLKLV--KKEPFRSPQKVGALIFLVVGII 478
>ref|XP_543722.2| PREDICTED: similar to solute carrier family 38, member 2 [Canis
familiaris].
Length = 747
Score = 302 bits (774), Expect = 5e-82
Identities = 190/457 (41%), Positives = 243/457 (53%), Gaps = 13/457 (2%)
Frame = +1
Query: 91 PKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSG 270
P AL D E + FL + + T F G TSFGMSVFNLSNAI+GSG
Sbjct: 273 PTKQAALKSHYADVDPENQNFLLESNVGKKKYETDF--HPGTTSFGMSVFNLSNAIVGSG 330
Query: 271 ILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKV 450
ILGL+YAMA+TG+ S YS+HLLL A G YEQLG +A G GK+
Sbjct: 331 ILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQLGHKAFGLVGKL 390
Query: 451 VVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDM-DPEGDWFLKGNXXXXXXXXXXXXX 627
+ I + N+GAMSSYLFI+K ELPLVI +++ D G W+L G+
Sbjct: 391 AASGSITMQNIGAMSSYLFIVKYELPLVIQALMNIEDTTGLWYLNGDYLVLLVSLVLILP 450
Query: 628 XALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIG----HNETAVES-KGPSSLP 792
+L+R+ CM+FFLI VI KKFQ+ C + NET + P+ L
Sbjct: 451 LSLLRNLGYLGYTSGLSLLCMMFFLIVVICKKFQIPCPVEVGLIINETINSTLTHPTPLA 510
Query: 793 TQGLNT----SCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVAN 960
+ N SC + F +SQ Y VPI+ F+FVCHP +LPIY EL S+RRM V+
Sbjct: 511 SDMFNVTDDDSCRPRYFIFNSQTVYAVPILTFSFVCHPAILPIYEELKGRSRRRMMNVSK 570
Query: 961 VSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQ---QDXXXXXXXXXXXXXXXXXXXX 1131
+S AMF MY L A FGYLTFY VE+E+LH YS D
Sbjct: 571 ISFFAMFLMYLLAALFGYLTFYEHVESELLHTYSTIMGTDILLLIVRLAVLMAVTLTVPV 630
Query: 1132 XXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSL 1311
FPIR ++ LL +K FSW RH VPTIRDIFG IG+++A L
Sbjct: 631 VIFPIRSSITHLLCATKDFSWWRHSLITVSILAFTNLLVIFVPTIRDIFGFIGASAAAML 690
Query: 1312 IFILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
IFILPS FY+++V + EP+ S KI A+ F + G++
Sbjct: 691 IFILPSAFYIKLV--KKEPMKSVQKIGAMLFLLSGIV 725
>ref|XP_864042.1| PREDICTED: similar to solute carrier family 38, member 4 isoform 6
[Canis familiaris].
Length = 517
Score = 300 bits (769), Expect = 2e-81
Identities = 180/425 (42%), Positives = 236/425 (55%), Gaps = 21/425 (4%)
Frame = +1
Query: 211 GKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGV 390
G TSFGMS FNLSNAIMGSGILGL+YAMA+TG+ S YS+HLLL A
Sbjct: 74 GTTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAILSLYSVHLLLKTAKE 133
Query: 391 VGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-G 567
G YE+LG++A G GK+ I + N+GAMSSYLFIIK ELP VI F+ ++ G
Sbjct: 134 GGSLIYEKLGEKAFGWPGKIGAFVSITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTG 193
Query: 568 DWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC--- 738
+W+L GN +L+++ CM+FF+ VIYKKFQ+ C
Sbjct: 194 EWYLNGNYLVIFVSLGIILPLSLLKNLGYLGYTSGFSLTCMVFFVSVVIYKKFQIPCPLP 253
Query: 739 VIGHNETAVESKGPSSLPTQGL--------------NTSCEAQMFTADSQMFYTVPIMAF 876
V+ HN + ++LP + + C+ + F +S+ Y +PI+AF
Sbjct: 254 VLDHNVGNLTFN--NTLPVHMVMLPNNSEIEYEAHSDDKCQPKYFVFNSRTAYAIPILAF 311
Query: 877 AFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEMLHM 1056
AFVCHPEVLPIY+EL S+R+MQ V+N+SI M MY L A FGYLTFY VE E+LH
Sbjct: 312 AFVCHPEVLPIYSELKDRSRRKMQTVSNISITGMLIMYLLAALFGYLTFYGEVEDELLHA 371
Query: 1057 YSQQ---DXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXX 1227
YS+ D FPIR ++ LLFP + FSW RH
Sbjct: 372 YSKVYTFDTPLLMVRLAVLVAVTLTVPIVLFPIRTSVTTLLFPKRPFSWIRHFLIAAILL 431
Query: 1228 XXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXALCFG 1407
VPTI+ IFG IG++SA LIFILP++FYL++V + EP S K+ AL F
Sbjct: 432 ALNNVLVILVPTIKYIFGFIGASSATMLIFILPAVFYLKLV--KKEPFRSPQKVGALIFL 489
Query: 1408 VLGVL 1422
V+G++
Sbjct: 490 VVGII 494
>ref|XP_543721.2| PREDICTED: similar to solute carrier family 38, member 4 isoform 1
[Canis familiaris].
Length = 548
Score = 293 bits (751), Expect = 2e-79
Identities = 182/454 (40%), Positives = 238/454 (52%), Gaps = 50/454 (11%)
Frame = +1
Query: 211 GKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGV 390
G TSFGMS FNLSNAIMGSGILGL+YAMA+TG+ S YS+HLLL A
Sbjct: 74 GTTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAILSLYSVHLLLKTAKE 133
Query: 391 VGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-G 567
G YE+LG++A G GK+ I + N+GAMSSYLFIIK ELP VI F+ ++ G
Sbjct: 134 GGSLIYEKLGEKAFGWPGKIGAFVSITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTG 193
Query: 568 DWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC--- 738
+W+L GN +L+++ CM+FF+ VIYKKFQ+ C
Sbjct: 194 EWYLNGNYLVIFVSLGIILPLSLLKNLGYLGYTSGFSLTCMVFFVSVVIYKKFQIPCPLP 253
Query: 739 VIGHNETAV-------------------------------------ESKGPSSLPTQGL- 804
V+ HN + E++ SL G+
Sbjct: 254 VLDHNVGNLTFNNTLPVHMVMLPNNSESSGVNFMMDYTHQNPAGLDENQAKGSLHGSGVE 313
Query: 805 -----NTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSI 969
+ C+ + F +S+ Y +PI+AFAFVCHPEVLPIY+EL S+R+MQ V+N+SI
Sbjct: 314 YEAHSDDKCQPKYFVFNSRTAYAIPILAFAFVCHPEVLPIYSELKDRSRRKMQTVSNISI 373
Query: 970 GAMFCMYALTATFGYLTFYSSVEAEMLHMYSQQ---DXXXXXXXXXXXXXXXXXXXXXXF 1140
M MY L A FGYLTFY VE E+LH YS+ D F
Sbjct: 374 TGMLIMYLLAALFGYLTFYGEVEDELLHAYSKVYTFDTPLLMVRLAVLVAVTLTVPIVLF 433
Query: 1141 PIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFI 1320
PIR ++ LLFP + FSW RH VPTI+ IFG IG++SA LIFI
Sbjct: 434 PIRTSVTTLLFPKRPFSWIRHFLIAAILLALNNVLVILVPTIKYIFGFIGASSATMLIFI 493
Query: 1321 LPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
LP++FYL++V + EP S K+ AL F V+G++
Sbjct: 494 LPAVFYLKLV--KKEPFRSPQKVGALIFLVVGII 525
>ref|XP_534827.2| PREDICTED: similar to solute carrier family 38, member 1 [Canis
familiaris].
Length = 487
Score = 262 bits (669), Expect = 7e-70
Identities = 165/443 (37%), Positives = 230/443 (51%), Gaps = 2/443 (0%)
Frame = +1
Query: 100 NGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILG 279
NG + + R+ R SH +K +++ G TS GMSVFNLSNAIMGSGILG
Sbjct: 36 NGQINSKFISDRESRRSLTNSHLEK--KKCDEYIP--GTTSLGMSVFNLSNAIMGSGILG 91
Query: 280 LAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVA 459
LA+A+A+TG+ S YSI+LLL C+ G YE+LG++ G GK+V+
Sbjct: 92 LAFALANTGILLFLILLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKLVIF 151
Query: 460 AVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-GDWFLKGNXXXXXXXXXXXXXXAL 636
L N GAM SYLFI+K+ELP I + + W++ G L
Sbjct: 152 GATSLQNTGAMLSYLFIVKNELPSAIKFLMGKEEAFSAWYVDGRVLVVVVTFGIILPLCL 211
Query: 637 MRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPTQGLNTSC 816
+++ CM+FFLI VIYKKFQ+ C + + + + + C
Sbjct: 212 LKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQIRCDVAELNSTISANLTNP-------DMC 264
Query: 817 EAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYAL 996
+ T +S+ Y +P +AFAFVCHP VLPIY+EL S+++MQ V+N+S AMF MY L
Sbjct: 265 TPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFL 324
Query: 997 TATFGYLTFYSSVEAEMLHMY-SQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLF 1173
TA FGYLTFY +V++++LH Y S+ D F +R +L +L
Sbjct: 325 TAIFGYLTFYENVQSDLLHKYQSKDDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAK 384
Query: 1174 PSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVP 1353
+K F+ RH +P+++DIFGV+G TSA LIFILPS YL+I
Sbjct: 385 KTK-FNLCRHILVTFILLVIINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITS 443
Query: 1354 SEVEPLYSWPKIXALCFGVLGVL 1422
+ + +I A F LGVL
Sbjct: 444 QDGDK--GTQRIWAALFLGLGVL 464
>ref|XP_852226.1| PREDICTED: similar to N system amino acid transporter NAT-1 isoform 1
[Canis familiaris].
Length = 398
Score = 236 bits (602), Expect = 4e-62
Identities = 139/391 (35%), Positives = 188/391 (48%), Gaps = 3/391 (0%)
Frame = +1
Query: 259 MGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGP 438
MGSGILGLAY MAHTG+ +SYS+HLLL+ + +YE LG A G
Sbjct: 1 MGSGILGLAYVMAHTGILGFSFLLLIVALLASYSVHLLLSMCIQTAVTSYEDLGLFAFGL 60
Query: 439 AGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFLKGNXXXXXXXXXX 618
GKV+VA I + N+GAMSSYL IIK+ELP I FL D G W+L G
Sbjct: 61 PGKVMVAGTILIQNIGAMSSYLLIIKTELPATISEFLSGDHTGSWYLDGQTLLIIICVGI 120
Query: 619 XXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPTQ 798
AL+ M+FF + VI KK+ + C +
Sbjct: 121 VFPLALLPKIGFLGYTSSLSFFFMVFFALVVIIKKWSIPCPV------PLIYAEQYFQIS 174
Query: 799 GLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAM 978
C+ ++F + Y +P MAF+F+CH +LPIY EL PSK+RMQ + +I
Sbjct: 175 NATDDCKPKLFHFSKESVYAIPTMAFSFLCHTSILPIYCELQSPSKKRMQNATHTAIALS 234
Query: 979 FCMYALTATFGYLTFYSSVEAEMLHMYS---QQDXXXXXXXXXXXXXXXXXXXXXXFPIR 1149
F +Y ++A FGYLTFY V +E+L YS +D FP R
Sbjct: 235 FLIYFISALFGYLTFYDKVASELLQGYSIYLPRDVVILTVKLCILFAVLLTVPLIHFPAR 294
Query: 1150 RALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPS 1329
+AL + F + FSW H VP IR+IFGV+GS+++ LIF+ P
Sbjct: 295 KALMMMFFSNFPFSWICHSLITLALNIIIVLLALYVPDIRNIFGVVGSSTSACLIFVFPG 354
Query: 1330 IFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
+FYL++ E SW K+ A + G+L
Sbjct: 355 LFYLKL---SREDFLSWKKLGAFVLLIFGIL 382
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,857,067
Number of extensions: 1922633
Number of successful extensions: 7976
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 7909
Number of HSP's successfully gapped: 14
Length of query: 486
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 379
Effective length of database: 15,307,552
Effective search space: 5801562208
Effective search space used: 5801562208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008955
(1459 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230411.1| solute carrier family 38, member 5 [Sus scro... 720 0.0
Alignment gi|XP_003358496.1| PREDICTED: sodium-coupled neutral amino acid... 388 e-108
Alignment gi|XP_003126674.1| PREDICTED: sodium-coupled neutral amino acid... 301 5e-82
Alignment gi|XP_003355677.1| PREDICTED: sodium-coupled neutral amino acid... 264 8e-71
Alignment gi|XP_003355675.1| PREDICTED: sodium-coupled neutral amino acid... 246 2e-65
Alignment gi|XP_003355678.1| PREDICTED: sodium-coupled neutral amino acid... 244 7e-65
Alignment gi|XP_003121895.2| PREDICTED: probable sodium-coupled neutral a... 216 3e-56
Alignment gi|XP_001924386.3| PREDICTED: probable sodium-coupled neutral a... 158 8e-39
Alignment gi|XP_003133486.2| PREDICTED: putative sodium-coupled neutral a... 60 2e-09
>ref|NP_001230411.1| solute carrier family 38, member 5 [Sus scrofa].
Length = 472
Score = 720 bits (1858), Expect = 0.0
Identities = 375/460 (81%), Positives = 375/460 (81%), Gaps = 1/460 (0%)
Frame = +1
Query: 76 MELQDPKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNA 255
MELQDPKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNA
Sbjct: 1 MELQDPKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNA 60
Query: 256 IMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALG 435
IMGSGILGLAYAMAHTGV SSYSIHLLLTCAGVVGIRAYEQLGQRALG
Sbjct: 61 IMGSGILGLAYAMAHTGVLFFLALLLCIALLSSYSIHLLLTCAGVVGIRAYEQLGQRALG 120
Query: 436 PAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFLKGNXXXXXXXXX 615
PAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFLKGN
Sbjct: 121 PAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFLKGNLLIIIVSVL 180
Query: 616 XXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPT 795
ALMRH CMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPT
Sbjct: 181 IILPLALMRHLGYLGYTSGLSLTCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPT 240
Query: 796 QGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGA 975
QGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGA
Sbjct: 241 QGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGA 300
Query: 976 MFCMYALTATFGYLTFYSSVEAEMLHMYSQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRA 1155
MFCMYALTATFGYLTFYSSVEAEMLHMYSQQD FPIRRA
Sbjct: 301 MFCMYALTATFGYLTFYSSVEAEMLHMYSQQDLLILCVRLAVLLAVTLTVPVVLFPIRRA 360
Query: 1156 LQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIF 1335
LQQLLFPSKAFSWPRH CVPTIRDIFGVIGSTSAPSLIFILPSIF
Sbjct: 361 LQQLLFPSKAFSWPRHVAIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIFILPSIF 420
Query: 1336 YLRIVPSEVEPLYSWPKIXALCFGVLGVLSWHQS-RFMFA 1452
YLRIVPSEVEPLYSWPKI ALCFGVLGVL S FMFA
Sbjct: 421 YLRIVPSEVEPLYSWPKIQALCFGVLGVLFMAISLGFMFA 460
>ref|XP_003358496.1| PREDICTED: sodium-coupled neutral amino acid transporter 3 [Sus
scrofa].
Length = 504
Score = 388 bits (997), Expect = e-108
Identities = 222/441 (50%), Positives = 265/441 (60%), Gaps = 13/441 (2%)
Frame = +1
Query: 139 EREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXX 318
E EGFL +P ++P F DFEGKTSFGMSVFNLSNAIMGSGILGLAYAMA+TG+
Sbjct: 44 EGEGFLQK---SPSKEP-HFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILF 99
Query: 319 XXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSS 498
SSYSIHLLL +G+VGIRAYEQLG RA G GK+ A I L N+GAMSS
Sbjct: 100 LFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSS 159
Query: 499 YLFIIKSELPLVIGTFLDMDPE-GDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXX 675
YL+IIKSELPLVI TFL+++ + DW++ GN ALMR
Sbjct: 160 YLYIIKSELPLVIQTFLNLEEQTSDWYMNGNYLVILVSVIVILPLALMRQLGYLGYSSGF 219
Query: 676 XXXCMLFFLISVIYKKFQLGC--------VIGHNETAVESKGPSSLPTQGLNTS-CEAQM 828
CM+FFLI+VIYKKF + C + G+ K + L + T+ C
Sbjct: 220 SLSCMVFFLIAVIYKKFHVPCPLAPSLANITGNFSLMEVVKEQAQLQVETEVTAFCTPNY 279
Query: 829 FTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTATF 1008
FT ++Q YT+PIMAFAFVCHPEVLPIYTEL PSKR+MQ ++N+SI M+ MY L A F
Sbjct: 280 FTLNTQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALF 339
Query: 1009 GYLTFYSSVEAEMLHMYSQQ---DXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLFPS 1179
GYLTFY VE+E+LH YS+ D FP+RRALQQ+LF
Sbjct: 340 GYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQMLFQD 399
Query: 1180 KAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSE 1359
+ FSW RH P I IFGVIG+TSAP LIFI P+IFY RI+P E
Sbjct: 400 QEFSWLRHVLIAISLLTCINLLVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIMPIE 459
Query: 1360 VEPLYSWPKIXALCFGVLGVL 1422
EP S PKI ALCF +G+L
Sbjct: 460 KEPAKSTPKILALCFAAVGLL 480
>ref|XP_003126674.1| PREDICTED: sodium-coupled neutral amino acid transporter 2-like
isoform 1 [Sus scrofa].
Length = 506
Score = 301 bits (772), Expect = 5e-82
Identities = 186/457 (40%), Positives = 240/457 (52%), Gaps = 14/457 (3%)
Frame = +1
Query: 91 PKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSG 270
P AL D E + FL + + T F G TSFGMSVFNLSNAI+GSG
Sbjct: 31 PTKQAALKSHYADVDPENQNFLLESNLGKKKYETDF--HPGTTSFGMSVFNLSNAIVGSG 88
Query: 271 ILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKV 450
ILGL+YAMA+TG+ S YS+HLLL A G YEQLG +A G GK
Sbjct: 89 ILGLSYAMANTGIALFIILLTVVSIFSLYSVHLLLKTANEGGSLLYEQLGHKAFGLVGKF 148
Query: 451 VVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMD-PEGDWFLKGNXXXXXXXXXXXXX 627
+ I + N+GAMSSYLFI+K ELPLVI ++++ +G W+L G+
Sbjct: 149 AASGSITMQNIGAMSSYLFIVKYELPLVIQALMNIEATDGLWYLNGDYLVLLVSLVLILP 208
Query: 628 XALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC------VIGHNETAVESKGPSSL 789
+L+R+ CM+FFLI VI KKFQ+ C +I + ++ + +
Sbjct: 209 LSLLRNLGYLGYTSGLSLLCMMFFLIVVICKKFQIPCPVEVAIIINETINSTFTQPTTFV 268
Query: 790 PTQGLN----TSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVA 957
P N SC + F +SQ Y VPI+ F+FVCHP +LPIY EL S+RRM V+
Sbjct: 269 PDMAFNMTEDDSCRPRYFILNSQTVYAVPILTFSFVCHPAILPIYEELKGRSRRRMMNVS 328
Query: 958 NVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQ---QDXXXXXXXXXXXXXXXXXXX 1128
+S AMF MY L A FGYLTFY VE E+LH YS D
Sbjct: 329 KISFFAMFLMYLLAALFGYLTFYDHVETELLHTYSSIMGTDILLLIVRLAVLVAVTLTVP 388
Query: 1129 XXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPS 1308
FPIR ++ LL +K FSW RH VPTIRDIFG IG+++A
Sbjct: 389 VVIFPIRSSITHLLCATKEFSWWRHSIITVSILAFTNLLVIFVPTIRDIFGFIGASAAAM 448
Query: 1309 LIFILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGV 1419
LIFILPS FY+++V + EP+ S KI A+ F + G+
Sbjct: 449 LIFILPSAFYIKLV--KKEPMKSVQKIGAVLFLLSGI 483
>ref|XP_003355677.1| PREDICTED: sodium-coupled neutral amino acid transporter 1 [Sus
scrofa].
Length = 486
Score = 264 bits (675), Expect = 8e-71
Identities = 168/443 (37%), Positives = 230/443 (51%), Gaps = 2/443 (0%)
Frame = +1
Query: 100 NGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILG 279
NG + + R+ R SH +K +++ G TS GMSVFNLSNAIMGSGILG
Sbjct: 36 NGQINSKFISDRESRRSLTNSHLEK--KKCDEYIP--GTTSLGMSVFNLSNAIMGSGILG 91
Query: 280 LAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVA 459
LA+A+A+TG+ S YSI+LLL C+ G YE+LG++ G GK+V+
Sbjct: 92 LAFALANTGILLFLVLLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKLVIF 151
Query: 460 AVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-GDWFLKGNXXXXXXXXXXXXXXAL 636
L N GAM SYLFI+K+ELP I + + W++ G L
Sbjct: 152 GATSLQNTGAMLSYLFIVKNELPSAIKFLMGKEETFSPWYVDGRVLVVVVTFGIILPLCL 211
Query: 637 MRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPTQGLNTSC 816
+++ CM+FFLI VIYKKFQ+ C ++ + S P++ C
Sbjct: 212 LKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQISC----SDPELNSTSPNATNAD----MC 263
Query: 817 EAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYAL 996
+ T +S+ Y +P +AFAFVCHP VLPIY+EL S+++MQ V+N+S AMF MY L
Sbjct: 264 TPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFL 323
Query: 997 TATFGYLTFYSSVEAEMLHMY-SQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLF 1173
TA FGYLTFY +V +++LH Y S+ D F +R +L +L
Sbjct: 324 TAIFGYLTFYDNVHSDLLHKYQSKDDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAK 383
Query: 1174 PSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVP 1353
+K F RH +PT++DIFGV+G TSA LIFILPS YL+I
Sbjct: 384 KTK-FHLCRHVLVTFILLVIINLLVIFIPTMKDIFGVVGVTSANMLIFILPSSLYLKITS 442
Query: 1354 SEVEPLYSWPKIXALCFGVLGVL 1422
+ + +I A F LGVL
Sbjct: 443 QDGDK--GTQRIWAALFLGLGVL 463
>ref|XP_003355675.1| PREDICTED: sodium-coupled neutral amino acid transporter 2-like
isoform 2 [Sus scrofa].
Length = 406
Score = 246 bits (629), Expect = 2e-65
Identities = 149/371 (40%), Positives = 196/371 (52%), Gaps = 14/371 (3%)
Frame = +1
Query: 349 SSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELP 528
S YS+HLLL A G YEQLG +A G GK + I + N+GAMSSYLFI+K ELP
Sbjct: 15 SLYSVHLLLKTANEGGSLLYEQLGHKAFGLVGKFAASGSITMQNIGAMSSYLFIVKYELP 74
Query: 529 LVIGTFLDMDP-EGDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLI 705
LVI ++++ +G W+L G+ +L+R+ CM+FFLI
Sbjct: 75 LVIQALMNIEATDGLWYLNGDYLVLLVSLVLILPLSLLRNLGYLGYTSGLSLLCMMFFLI 134
Query: 706 SVIYKKFQLGC------VIGHNETAVESKGPSSLPTQGLNT----SCEAQMFTADSQMFY 855
VI KKFQ+ C +I + ++ + +P N SC + F +SQ Y
Sbjct: 135 VVICKKFQIPCPVEVAIIINETINSTFTQPTTFVPDMAFNMTEDDSCRPRYFILNSQTVY 194
Query: 856 TVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSV 1035
VPI+ F+FVCHP +LPIY EL S+RRM V+ +S AMF MY L A FGYLTFY V
Sbjct: 195 AVPILTFSFVCHPAILPIYEELKGRSRRRMMNVSKISFFAMFLMYLLAALFGYLTFYDHV 254
Query: 1036 EAEMLHMYSQ---QDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHX 1206
E E+LH YS D FPIR ++ LL +K FSW RH
Sbjct: 255 ETELLHTYSSIMGTDILLLIVRLAVLVAVTLTVPVVIFPIRSSITHLLCATKEFSWWRHS 314
Query: 1207 XXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSEVEPLYSWPK 1386
VPTIRDIFG IG+++A LIFILPS FY+++V + EP+ S K
Sbjct: 315 IITVSILAFTNLLVIFVPTIRDIFGFIGASAAAMLIFILPSAFYIKLV--KKEPMKSVQK 372
Query: 1387 IXALCFGVLGV 1419
I A+ F + G+
Sbjct: 373 IGAVLFLLSGI 383
>ref|XP_003355678.1| PREDICTED: sodium-coupled neutral amino acid transporter 4 [Sus
scrofa].
Length = 437
Score = 244 bits (624), Expect = 7e-65
Identities = 154/408 (37%), Positives = 206/408 (50%), Gaps = 50/408 (12%)
Frame = +1
Query: 349 SSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELP 528
S YS+HLLL + G YE+LG++A G GK+ I + N+GAMSSYLFIIK ELP
Sbjct: 9 SLYSVHLLLKTSKEGGSLIYEKLGEKAFGWPGKIGAFVSITMQNIGAMSSYLFIIKYELP 68
Query: 529 LVIGTFLDMDPE-GDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLI 705
VI F+ ++ G+W+L GN +L+++ CM+FF+
Sbjct: 69 EVIRAFMGLEENTGEWYLNGNYLVIFVSVAIILPLSLLKNLGYLGYTSGFSLTCMVFFVS 128
Query: 706 SVIYKKFQLGC---VIGHNETAVESKG---------PSSLPTQGLN-------------- 807
VIYKKFQ+ C V+ HN V P++ + G+N
Sbjct: 129 VVIYKKFQIPCPLPVLDHNVGNVSFNNTLPMHVVMVPNNSESSGVNFMMDYTHQKPAGLD 188
Query: 808 --------------------TSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCR 927
C+ + F +S+ Y +PI+AFAFVCHPEVLPIY+EL
Sbjct: 189 ENQAKGSLHGSGVEYEAHSDDKCQPKYFVFNSRTAYAIPILAFAFVCHPEVLPIYSELKD 248
Query: 928 PSKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQQ---DXXXXXXXXX 1098
S+R+MQ V+N+SI M MY L A FGYLTFY VE E+LH YS+ D
Sbjct: 249 RSQRKMQTVSNISISGMLAMYLLAALFGYLTFYGEVEDELLHAYSKVYTFDTPLLMVRLA 308
Query: 1099 XXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIF 1278
FPIR ++ LLFP + FSW RH VPTI+ IF
Sbjct: 309 VLVAVTLTVPIVLFPIRTSVTTLLFPKRPFSWIRHFLIAAIVIALNNVLVILVPTIKYIF 368
Query: 1279 GVIGSTSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
G IG++SA LIFILP+ FYL++V + EPL S K+ AL F V+G++
Sbjct: 369 GFIGASSATMLIFILPAAFYLKLV--KKEPLRSPQKVGALIFLVVGII 414
>ref|XP_003121895.2| PREDICTED: probable sodium-coupled neutral amino acid transporter 6,
partial [Sus scrofa].
Length = 350
Score = 216 bits (549), Expect = 3e-56
Identities = 119/282 (42%), Positives = 153/282 (54%)
Frame = +1
Query: 220 SFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGI 399
SFG SVFNL NAIMGSGILGLAY MAHTG+ +SYS+HLLL+ +
Sbjct: 46 SFGFSVFNLMNAIMGSGILGLAYVMAHTGILGFSLLLLMVALLASYSVHLLLSMCIQTAV 105
Query: 400 RAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFL 579
+YE LG A G GKVVVA I + N+GAMSSYL IIK+ELP I FL D G W+L
Sbjct: 106 TSYEDLGLFAFGLPGKVVVAGTIIIQNIGAMSSYLLIIKTELPAAISEFLSGDHSGSWYL 165
Query: 580 KGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNET 759
G AL+ M+FF I +I KK+ + C + N
Sbjct: 166 DGETLLIIICVGIVFPLALLPKIGFLGYTSSLSFFFMVFFAIVIIIKKWSIPCPLTLNYI 225
Query: 760 AVESKGPSSLPTQGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKR 939
+ C+ ++F + Y +P MAF+F+CH +LPIY EL PSK+
Sbjct: 226 ------ERYFQISNVTDDCKPKLFHFSKESAYAIPTMAFSFLCHTSILPIYCELQSPSKK 279
Query: 940 RMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQ 1065
RMQ V N +I F +Y ++A FGYLTFY +V +E+L YS+
Sbjct: 280 RMQNVTNTAIALSFLIYFISALFGYLTFYDNVASELLQGYSK 321
>ref|XP_001924386.3| PREDICTED: probable sodium-coupled neutral amino acid transporter
6-like [Sus scrofa].
Length = 343
Score = 158 bits (399), Expect = 8e-39
Identities = 97/307 (31%), Positives = 139/307 (45%), Gaps = 3/307 (0%)
Frame = +1
Query: 511 IKSELPLVIGTFLDMDPEGDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCM 690
++S L +GTF P W+L G AL+ M
Sbjct: 33 VRSLCLLSVGTFF---PNRSWYLDGETLLIIICVGIVFPLALLPKIGFLGYTSSLSFFFM 89
Query: 691 LFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPTQGLNTSCEAQMFTADSQMFYTVPIM 870
+FF I +I KK+ + C + N + C+ ++F + Y +P M
Sbjct: 90 VFFAIVIIIKKWSIPCPLTLNYIE------RYFQISNVTDDCKPKLFHFSKESAYAIPTM 143
Query: 871 AFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEML 1050
AF+F+CH +LPIY EL PSK+RMQ V N +I F +Y ++A FGYLTFY +V +E+L
Sbjct: 144 AFSFLCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLIYFISALFGYLTFYDNVASELL 203
Query: 1051 HMYSQ---QDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXX 1221
YS+ D FP R+AL + F + FSW RH
Sbjct: 204 QGYSKYLPHDVVVMTVKLCILFAVLLTVPLIHFPARKALMMIFFSNFPFSWIRHFLITLA 263
Query: 1222 XXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXALC 1401
VP IR++FGVIGS+++ LIF+ P +FYLR+ E SW K+ A
Sbjct: 264 LNIIIVLLAIYVPDIRNVFGVIGSSTSTCLIFVFPGLFYLRL---SREDFLSWKKLGAFV 320
Query: 1402 FGVLGVL 1422
+ G+L
Sbjct: 321 LLIFGIL 327
>ref|XP_003133486.2| PREDICTED: putative sodium-coupled neutral amino acid transporter
11-like [Sus scrofa].
Length = 406
Score = 60.5 bits (145), Expect = 2e-09
Identities = 74/333 (22%), Positives = 119/333 (35%)
Frame = +1
Query: 349 SSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELP 528
+ +S+ LL+ + G Y+ L + G G ++++ + L+ AM SY + L
Sbjct: 20 TDFSLVLLIKGGALSGTDTYQSLVNKTFGFPGYLLLSVLQFLYPFIAMISYNIVTGDTLS 79
Query: 529 LVIGTFLDMDPEGDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLIS 708
V +DPE + + + +L R LIS
Sbjct: 80 KVFQRLPGVDPE-NLLIGRHFIIVLSTIAFTLPLSLYRDIAKLGKIS----------LIS 128
Query: 709 VIYKKFQLGCVIGHNETAVESKGPSSLPTQGLNTSCEAQMFTADSQMFYTVPIMAFAFVC 888
+ LG V+ T V S GP T+ +A +F A V +M+FAF+C
Sbjct: 129 TVLTTLILGIVM----TRVVSLGPHIPKTE------DAWIF-AKPNAIQAVGVMSFAFIC 177
Query: 889 HPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQQ 1068
H +Y L P+ + + +VS + L AT GYLTF + ++ Y +
Sbjct: 178 HHNCFLVYGSLEEPTVTKWSHIIHVSTSISVFISILFATCGYLTFTGFTQGDLFENYCRN 237
Query: 1069 DXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXX 1248
D F R + + F S S H
Sbjct: 238 DDLVTFGRFCYGITVILTYPIECFVTREVIANVFF-SGNLSSVLHIIITVAIITVATLVS 296
Query: 1249 XCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRI 1347
V + + + G A LIFI+PS YL++
Sbjct: 297 LLVDCLGIVLELNGVLCAAPLIFIIPSACYLKL 329
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,639,136
Number of extensions: 1208977
Number of successful extensions: 5028
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4975
Number of HSP's successfully gapped: 10
Length of query: 486
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 383
Effective length of database: 8,779,541
Effective search space: 3362564203
Effective search space used: 3362564203
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008955
(1459 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766067.2| sodium-coupled neutral amino acid transporter 5... 608 e-174
Alignment gi|NP_001186147.1| sodium-coupled neutral amino acid transporte... 393 e-109
Alignment gi|NP_001186146.1| sodium-coupled neutral amino acid transporte... 393 e-109
Alignment gi|NP_076294.2| sodium-coupled neutral amino acid transporter 3... 393 e-109
Alignment gi|NP_780330.2| sodium-coupled neutral amino acid transporter 2... 312 5e-85
Alignment gi|NP_081328.2| sodium-coupled neutral amino acid transporter 4... 289 3e-78
Alignment gi|NP_001159930.1| sodium-coupled neutral amino acid transporte... 264 1e-70
Alignment gi|NP_001159928.1| sodium-coupled neutral amino acid transporte... 264 1e-70
Alignment gi|NP_598847.2| sodium-coupled neutral amino acid transporter 1... 264 1e-70
Alignment gi|NP_001032806.2| solute carrier family 38, member 6 [Mus musc... 260 2e-69
>ref|NP_766067.2| sodium-coupled neutral amino acid transporter 5 [Mus musculus].
Length = 479
Score = 608 bits (1567), Expect = e-174
Identities = 320/462 (69%), Positives = 345/462 (74%), Gaps = 3/462 (0%)
Frame = +1
Query: 76 MELQDPKMNGALPRGAV-DYRQEREGFLPS-HSPAPGRKPTQFMDFEGKTSFGMSVFNLS 249
ME+Q+PKMNG L GA YRQEREGFLP+ +PA GRKP QF+DFEGKTSFGMSVFNLS
Sbjct: 9 MEMQEPKMNGTLSAGAAAGYRQEREGFLPTTRNPATGRKPVQFLDFEGKTSFGMSVFNLS 68
Query: 250 NAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRA 429
NAIMGSGILGLAYAMAHTGV SSYSIHLLLTCA VVGIRAYEQLGQRA
Sbjct: 69 NAIMGSGILGLAYAMAHTGVIFFLALLLCIALLSSYSIHLLLTCASVVGIRAYEQLGQRA 128
Query: 430 LGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFLKGNXXXXXXX 609
GPAGKVVVA +ICLHNVGAMSSYLFIIKSELPLVIGTFL MDPEGDWFLKGN
Sbjct: 129 FGPAGKVVVAIIICLHNVGAMSSYLFIIKSELPLVIGTFLHMDPEGDWFLKGNLLIILVS 188
Query: 610 XXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSL 789
ALM+H CMLFFLISVIYKKFQ+GC + HN+T VE++
Sbjct: 189 LLIILPLALMKHLGYLGYTSSLSLTCMLFFLISVIYKKFQIGCDVSHNDTVVEAE---QA 245
Query: 790 PTQGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSI 969
P Q N+SCEA++FT DSQM YTVPIMAFAFVCHPEVLPIYTELCRP++RRMQAVAN+SI
Sbjct: 246 PLQAFNSSCEAELFTVDSQMSYTVPIMAFAFVCHPEVLPIYTELCRPTQRRMQAVANMSI 305
Query: 970 GAMFCMYALTATFGYLTFYSSVEAEMLHMYSQQDXXXXXXXXXXXXXXXXXXXXXXFPIR 1149
GAMF MY LTATFGYLTFYS+V+AEML MY+Q+D FPIR
Sbjct: 306 GAMFIMYGLTATFGYLTFYSTVKAEMLEMYTQEDMLILCVRLAVLLAVTLTVPVVLFPIR 365
Query: 1150 RALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPS 1329
RALQQLLFPSKAFSW RH CVPTIRDIFG IGSTSAPSLIFILPS
Sbjct: 366 RALQQLLFPSKAFSWLRHVAIALILLILVNILVICVPTIRDIFGFIGSTSAPSLIFILPS 425
Query: 1330 IFYLRIVPSEVEPLYSWPKIXALCFGVLGVLSWHQS-RFMFA 1452
+FYLRIVP+EVEPL+SWPKI ALCFGVLGVL S FMFA
Sbjct: 426 VFYLRIVPTEVEPLFSWPKIQALCFGVLGVLFMAISLGFMFA 467
>ref|NP_001186147.1| sodium-coupled neutral amino acid transporter 3 [Mus musculus].
Length = 505
Score = 393 bits (1009), Expect = e-109
Identities = 221/443 (49%), Positives = 263/443 (59%), Gaps = 15/443 (3%)
Frame = +1
Query: 139 EREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXX 318
E +GFL +P ++P F DFEGKTSFGMSVFNLSNAIMGSGILGLAYAMA+TG+
Sbjct: 43 EGKGFLQK---SPSKEP-HFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILF 98
Query: 319 XXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSS 498
SSYSIHLLL +G+VGIRAYEQLG RA G GK+ A I L N+GAMSS
Sbjct: 99 LFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSS 158
Query: 499 YLFIIKSELPLVIGTFLDMD-PEGDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXX 675
YL+IIKSELPLVI TFL+++ P W++ GN ALMR
Sbjct: 159 YLYIIKSELPLVIQTFLNLEKPASVWYMDGNYLVILVSVTIILPLALMRQLGYLGYSSGF 218
Query: 676 XXXCMLFFLISVIYKKFQLGCVIGHN-----------ETAVESKGPSSLPTQGLNTSCEA 822
CM+FFLI+VIYKKFQ+ C + HN A E P C
Sbjct: 219 SLSCMVFFLIAVIYKKFQVPCPLAHNLANATGNFSHMVVAEEKAQLQGEPDTAAEAFCTP 278
Query: 823 QMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTA 1002
FT +SQ YT+PIMAFAFVCHPEVLPIYTEL PSKR+MQ ++N+SI M+ MY L A
Sbjct: 279 SYFTLNSQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAA 338
Query: 1003 TFGYLTFYSSVEAEMLHMYSQQ---DXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLF 1173
FGYLTFY VE+E+LH YS+ D FP+RRA+QQ+LF
Sbjct: 339 LFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLIAVTLTVPIVLFPVRRAIQQMLF 398
Query: 1174 PSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVP 1353
++ FSW RH P I IFG+IG+TSAP LIFI P+IFY RI+P
Sbjct: 399 QNQEFSWLRHVLIATGLLTCINLLVIFAPNILGIFGIIGATSAPCLIFIFPAIFYFRIMP 458
Query: 1354 SEVEPLYSWPKIXALCFGVLGVL 1422
++ EP S PKI ALCF +G L
Sbjct: 459 TDKEPARSTPKILALCFAAVGFL 481
>ref|NP_001186146.1| sodium-coupled neutral amino acid transporter 3 [Mus musculus].
Length = 505
Score = 393 bits (1009), Expect = e-109
Identities = 221/443 (49%), Positives = 263/443 (59%), Gaps = 15/443 (3%)
Frame = +1
Query: 139 EREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXX 318
E +GFL +P ++P F DFEGKTSFGMSVFNLSNAIMGSGILGLAYAMA+TG+
Sbjct: 43 EGKGFLQK---SPSKEP-HFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILF 98
Query: 319 XXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSS 498
SSYSIHLLL +G+VGIRAYEQLG RA G GK+ A I L N+GAMSS
Sbjct: 99 LFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSS 158
Query: 499 YLFIIKSELPLVIGTFLDMD-PEGDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXX 675
YL+IIKSELPLVI TFL+++ P W++ GN ALMR
Sbjct: 159 YLYIIKSELPLVIQTFLNLEKPASVWYMDGNYLVILVSVTIILPLALMRQLGYLGYSSGF 218
Query: 676 XXXCMLFFLISVIYKKFQLGCVIGHN-----------ETAVESKGPSSLPTQGLNTSCEA 822
CM+FFLI+VIYKKFQ+ C + HN A E P C
Sbjct: 219 SLSCMVFFLIAVIYKKFQVPCPLAHNLANATGNFSHMVVAEEKAQLQGEPDTAAEAFCTP 278
Query: 823 QMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTA 1002
FT +SQ YT+PIMAFAFVCHPEVLPIYTEL PSKR+MQ ++N+SI M+ MY L A
Sbjct: 279 SYFTLNSQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAA 338
Query: 1003 TFGYLTFYSSVEAEMLHMYSQQ---DXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLF 1173
FGYLTFY VE+E+LH YS+ D FP+RRA+QQ+LF
Sbjct: 339 LFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLIAVTLTVPIVLFPVRRAIQQMLF 398
Query: 1174 PSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVP 1353
++ FSW RH P I IFG+IG+TSAP LIFI P+IFY RI+P
Sbjct: 399 QNQEFSWLRHVLIATGLLTCINLLVIFAPNILGIFGIIGATSAPCLIFIFPAIFYFRIMP 458
Query: 1354 SEVEPLYSWPKIXALCFGVLGVL 1422
++ EP S PKI ALCF +G L
Sbjct: 459 TDKEPARSTPKILALCFAAVGFL 481
>ref|NP_076294.2| sodium-coupled neutral amino acid transporter 3 [Mus musculus].
Length = 505
Score = 393 bits (1009), Expect = e-109
Identities = 221/443 (49%), Positives = 263/443 (59%), Gaps = 15/443 (3%)
Frame = +1
Query: 139 EREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXX 318
E +GFL +P ++P F DFEGKTSFGMSVFNLSNAIMGSGILGLAYAMA+TG+
Sbjct: 43 EGKGFLQK---SPSKEP-HFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILF 98
Query: 319 XXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSS 498
SSYSIHLLL +G+VGIRAYEQLG RA G GK+ A I L N+GAMSS
Sbjct: 99 LFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSS 158
Query: 499 YLFIIKSELPLVIGTFLDMD-PEGDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXX 675
YL+IIKSELPLVI TFL+++ P W++ GN ALMR
Sbjct: 159 YLYIIKSELPLVIQTFLNLEKPASVWYMDGNYLVILVSVTIILPLALMRQLGYLGYSSGF 218
Query: 676 XXXCMLFFLISVIYKKFQLGCVIGHN-----------ETAVESKGPSSLPTQGLNTSCEA 822
CM+FFLI+VIYKKFQ+ C + HN A E P C
Sbjct: 219 SLSCMVFFLIAVIYKKFQVPCPLAHNLANATGNFSHMVVAEEKAQLQGEPDTAAEAFCTP 278
Query: 823 QMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTA 1002
FT +SQ YT+PIMAFAFVCHPEVLPIYTEL PSKR+MQ ++N+SI M+ MY L A
Sbjct: 279 SYFTLNSQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAA 338
Query: 1003 TFGYLTFYSSVEAEMLHMYSQQ---DXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLF 1173
FGYLTFY VE+E+LH YS+ D FP+RRA+QQ+LF
Sbjct: 339 LFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLIAVTLTVPIVLFPVRRAIQQMLF 398
Query: 1174 PSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVP 1353
++ FSW RH P I IFG+IG+TSAP LIFI P+IFY RI+P
Sbjct: 399 QNQEFSWLRHVLIATGLLTCINLLVIFAPNILGIFGIIGATSAPCLIFIFPAIFYFRIMP 458
Query: 1354 SEVEPLYSWPKIXALCFGVLGVL 1422
++ EP S PKI ALCF +G L
Sbjct: 459 TDKEPARSTPKILALCFAAVGFL 481
>ref|NP_780330.2| sodium-coupled neutral amino acid transporter 2 [Mus musculus].
Length = 504
Score = 312 bits (799), Expect = 5e-85
Identities = 193/455 (42%), Positives = 247/455 (54%), Gaps = 11/455 (2%)
Frame = +1
Query: 91 PKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSG 270
P AL D E + FL + + T F G TSFGMSVFNLSNAI+GSG
Sbjct: 31 PTKQAALKSHYADVDPENQNFLLESNLGKKKYETDF--HPGTTSFGMSVFNLSNAIVGSG 88
Query: 271 ILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKV 450
ILGL+YAMA+TG+ S YS+HLLL A G YEQLG +A G AGK+
Sbjct: 89 ILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQLGHKAYGLAGKL 148
Query: 451 VVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDM-DPEGDWFLKGNXXXXXXXXXXXXX 627
+ I + N+GAMSSYLFI+K ELPLVI +++ D G W+L G+
Sbjct: 149 AASGSITMQNIGAMSSYLFIVKYELPLVIKALMNIEDTNGLWYLNGDYLVLLVSLVLILP 208
Query: 628 XALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC----VIGHNETAVESKGPSSLPT 795
+L+R+ CM+FFLI VI KKFQ+ C + NET + ++L
Sbjct: 209 LSLLRNLGYLGYTSGLSLLCMIFFLIVVICKKFQIPCPVEAALVANETVNGTFTQAALAL 268
Query: 796 QGLNT---SCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVS 966
+T +C + F +SQ Y VPI+ F+FVCHP VLPIY EL S+RRM V+ +S
Sbjct: 269 AFNSTADDACRPRYFIFNSQTVYAVPILTFSFVCHPAVLPIYEELKSRSRRRMMNVSKIS 328
Query: 967 IGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQ---QDXXXXXXXXXXXXXXXXXXXXXX 1137
AMF MY L A FGYLTFY VE+E+LH YS+ D
Sbjct: 329 FFAMFLMYLLAALFGYLTFYGHVESELLHTYSEIVGTDILLLVVRLAVLVAVTLTVPVVI 388
Query: 1138 FPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIF 1317
FPIR ++ LL P+K FSW RH VPTIRDIFG IG+++A LIF
Sbjct: 389 FPIRSSVTHLLCPTKEFSWLRHSIITVTILSFTNLLVIFVPTIRDIFGFIGASAAAMLIF 448
Query: 1318 ILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
ILPS FY+++V + EP+ S KI ALCF + G++
Sbjct: 449 ILPSAFYIKLV--KKEPMRSVQKIGALCFLLSGIV 481
>ref|NP_081328.2| sodium-coupled neutral amino acid transporter 4 [Mus musculus].
Length = 547
Score = 289 bits (740), Expect = 3e-78
Identities = 181/454 (39%), Positives = 234/454 (51%), Gaps = 50/454 (11%)
Frame = +1
Query: 211 GKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGV 390
G TSFGMS FNLSNAIMGSGILGL+YAMA+TG+ S YS+HLLL A
Sbjct: 73 GMTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLTVAILSLYSVHLLLKTAKE 132
Query: 391 VGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-G 567
G YE+LG++A G GK+ I + N+GAMSSYLFIIK ELP VI F+ ++ G
Sbjct: 133 GGSLIYEKLGEKAFGWPGKIGAFISITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTG 192
Query: 568 DWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC--- 738
+W+L GN +L+++ CM+FF+ VIYKKFQ+ C
Sbjct: 193 EWYLNGNYLVLFVSVGIILPLSLLKNLGYLGYTSGFSLSCMVFFVSVVIYKKFQIPCPLP 252
Query: 739 VIGHNETAVESKG---------PSSLPTQGLN---------------------------- 807
+ HN + P+ + G+N
Sbjct: 253 ALDHNNGNLTFNNTLPIHMISLPNDSESSGVNFMMDYAHHNPAGLDEKQVAGPLHSNGVE 312
Query: 808 ------TSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSI 969
C+ + F +S+ Y +PI+AFAFVCHPEVLPIY+EL S+R+MQ V+N+SI
Sbjct: 313 YEAQGAEKCQPKYFVFNSRTAYAIPILAFAFVCHPEVLPIYSELKDRSRRKMQTVSNISI 372
Query: 970 GAMFCMYALTATFGYLTFYSSVEAEMLHMYSQQ---DXXXXXXXXXXXXXXXXXXXXXXF 1140
M MY L A FGYL+FY VE E+LH YS+ D F
Sbjct: 373 SGMLVMYLLAALFGYLSFYGDVEDELLHAYSKVYTFDTALLMVRLAVLVAVTLTVPIVLF 432
Query: 1141 PIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFI 1320
PIR ++ LLFP K FSW +H VPTI+ IFG IG++SA LIFI
Sbjct: 433 PIRTSVITLLFPRKPFSWLKHFGIAAIIIALNNILVILVPTIKYIFGFIGASSATMLIFI 492
Query: 1321 LPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
LP+ FYL++V + EPL S KI AL F V G++
Sbjct: 493 LPAAFYLKLV--KKEPLRSPQKIGALVFLVTGII 524
>ref|NP_001159930.1| sodium-coupled neutral amino acid transporter 1 [Mus musculus].
Length = 485
Score = 264 bits (675), Expect = 1e-70
Identities = 169/443 (38%), Positives = 230/443 (51%), Gaps = 2/443 (0%)
Frame = +1
Query: 100 NGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILG 279
NG + + R+ R SH RK +++ G TS GMSVFNLSNAIMGSGILG
Sbjct: 36 NGQINSKFISDRESRRSLTNSHLEK--RKCDEYIP--GTTSLGMSVFNLSNAIMGSGILG 91
Query: 280 LAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVA 459
LA+A+A+TG+ S YSI+LLL C+ G YE+LG++ G GK+V+
Sbjct: 92 LAFALANTGILLFLILLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKLVIF 151
Query: 460 AVICLHNVGAMSSYLFIIKSELPLVIGTFL-DMDPEGDWFLKGNXXXXXXXXXXXXXXAL 636
L N GAM SYLFI+K+ELP I + + + D W++ G L
Sbjct: 152 GATSLQNTGAMLSYLFIVKNELPSAIKSLMGEEDAFSAWYVDGRVLVVMVTFGIILPLCL 211
Query: 637 MRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPTQGLNTSC 816
+++ CM+FFLI VIYKKFQ C+ S +S + + +C
Sbjct: 212 LKNLGYLGYTSGFSLSCMMFFLIVVIYKKFQTPCM---------SVEQNSTVSANVTDAC 262
Query: 817 EAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYAL 996
+ T +S+ Y +P +AFAFVCHP VLPIY+EL S+++MQ V+N+S AMF MY L
Sbjct: 263 TPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFL 322
Query: 997 TATFGYLTFYSSVEAEMLHMY-SQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLF 1173
TA FGYLTFY V++++LH Y S D F +R +L +L
Sbjct: 323 TAIFGYLTFYEKVQSDLLHKYQSTGDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAK 382
Query: 1174 PSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVP 1353
+K F RH +P+++DIFGV+G TSA LIFILPS YL+I
Sbjct: 383 KTK-FHLCRHVLVTIILLIIINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITN 441
Query: 1354 SEVEPLYSWPKIXALCFGVLGVL 1422
+ + +I A F LGVL
Sbjct: 442 QDGDK--GTQRIWAALFLGLGVL 462
>ref|NP_001159928.1| sodium-coupled neutral amino acid transporter 1 [Mus musculus].
Length = 485
Score = 264 bits (675), Expect = 1e-70
Identities = 169/443 (38%), Positives = 230/443 (51%), Gaps = 2/443 (0%)
Frame = +1
Query: 100 NGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILG 279
NG + + R+ R SH RK +++ G TS GMSVFNLSNAIMGSGILG
Sbjct: 36 NGQINSKFISDRESRRSLTNSHLEK--RKCDEYIP--GTTSLGMSVFNLSNAIMGSGILG 91
Query: 280 LAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVA 459
LA+A+A+TG+ S YSI+LLL C+ G YE+LG++ G GK+V+
Sbjct: 92 LAFALANTGILLFLILLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKLVIF 151
Query: 460 AVICLHNVGAMSSYLFIIKSELPLVIGTFL-DMDPEGDWFLKGNXXXXXXXXXXXXXXAL 636
L N GAM SYLFI+K+ELP I + + + D W++ G L
Sbjct: 152 GATSLQNTGAMLSYLFIVKNELPSAIKSLMGEEDAFSAWYVDGRVLVVMVTFGIILPLCL 211
Query: 637 MRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPTQGLNTSC 816
+++ CM+FFLI VIYKKFQ C+ S +S + + +C
Sbjct: 212 LKNLGYLGYTSGFSLSCMMFFLIVVIYKKFQTPCM---------SVEQNSTVSANVTDAC 262
Query: 817 EAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYAL 996
+ T +S+ Y +P +AFAFVCHP VLPIY+EL S+++MQ V+N+S AMF MY L
Sbjct: 263 TPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFL 322
Query: 997 TATFGYLTFYSSVEAEMLHMY-SQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLF 1173
TA FGYLTFY V++++LH Y S D F +R +L +L
Sbjct: 323 TAIFGYLTFYEKVQSDLLHKYQSTGDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAK 382
Query: 1174 PSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVP 1353
+K F RH +P+++DIFGV+G TSA LIFILPS YL+I
Sbjct: 383 KTK-FHLCRHVLVTIILLIIINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITN 441
Query: 1354 SEVEPLYSWPKIXALCFGVLGVL 1422
+ + +I A F LGVL
Sbjct: 442 QDGDK--GTQRIWAALFLGLGVL 462
>ref|NP_598847.2| sodium-coupled neutral amino acid transporter 1 [Mus musculus].
Length = 485
Score = 264 bits (675), Expect = 1e-70
Identities = 169/443 (38%), Positives = 230/443 (51%), Gaps = 2/443 (0%)
Frame = +1
Query: 100 NGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILG 279
NG + + R+ R SH RK +++ G TS GMSVFNLSNAIMGSGILG
Sbjct: 36 NGQINSKFISDRESRRSLTNSHLEK--RKCDEYIP--GTTSLGMSVFNLSNAIMGSGILG 91
Query: 280 LAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVA 459
LA+A+A+TG+ S YSI+LLL C+ G YE+LG++ G GK+V+
Sbjct: 92 LAFALANTGILLFLILLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKLVIF 151
Query: 460 AVICLHNVGAMSSYLFIIKSELPLVIGTFL-DMDPEGDWFLKGNXXXXXXXXXXXXXXAL 636
L N GAM SYLFI+K+ELP I + + + D W++ G L
Sbjct: 152 GATSLQNTGAMLSYLFIVKNELPSAIKSLMGEEDAFSAWYVDGRVLVVMVTFGIILPLCL 211
Query: 637 MRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPTQGLNTSC 816
+++ CM+FFLI VIYKKFQ C+ S +S + + +C
Sbjct: 212 LKNLGYLGYTSGFSLSCMMFFLIVVIYKKFQTPCM---------SVEQNSTVSANVTDAC 262
Query: 817 EAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYAL 996
+ T +S+ Y +P +AFAFVCHP VLPIY+EL S+++MQ V+N+S AMF MY L
Sbjct: 263 TPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFL 322
Query: 997 TATFGYLTFYSSVEAEMLHMY-SQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLF 1173
TA FGYLTFY V++++LH Y S D F +R +L +L
Sbjct: 323 TAIFGYLTFYEKVQSDLLHKYQSTGDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAK 382
Query: 1174 PSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVP 1353
+K F RH +P+++DIFGV+G TSA LIFILPS YL+I
Sbjct: 383 KTK-FHLCRHVLVTIILLIIINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITN 441
Query: 1354 SEVEPLYSWPKIXALCFGVLGVL 1422
+ + +I A F LGVL
Sbjct: 442 QDGDK--GTQRIWAALFLGLGVL 462
>ref|NP_001032806.2| solute carrier family 38, member 6 [Mus musculus].
Length = 457
Score = 260 bits (664), Expect = 2e-69
Identities = 153/407 (37%), Positives = 205/407 (50%), Gaps = 6/407 (1%)
Frame = +1
Query: 220 SFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGI 399
SFG+SVFN+ NAIMGSGILGLAY MA+TG+ +SYS+HLLL +
Sbjct: 47 SFGLSVFNVMNAIMGSGILGLAYVMANTGILGFSFLLLFVALLASYSVHLLLAMCIHTAV 106
Query: 400 RAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFL 579
+YE LG A G GKVVVA I + N+GAMSSYL IIK+ELP I FL D G W+L
Sbjct: 107 TSYEDLGLFAFGLPGKVVVAGTIIIQNIGAMSSYLLIIKTELPAAISEFLPSDHSGSWYL 166
Query: 580 KGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIG---H 750
G +L+ M+FF + V+ KK+ + C +
Sbjct: 167 DGQMLLIIICVGIVFPLSLLPKIGFLGYTSSLSFFFMVFFALVVVIKKWAVPCPVTLDCI 226
Query: 751 NETAVESKGPSSLPTQGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRP 930
NE C+ ++F + Y +P MAF+F+CH VLPIY EL P
Sbjct: 227 NEV---------FQISNATDDCKPKLFHFSKESVYAIPTMAFSFLCHTSVLPIYCELQSP 277
Query: 931 SKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQ---QDXXXXXXXXXX 1101
SK+RMQ V N +I F +Y ++A FGYLTFY VE+E+L YS+ D
Sbjct: 278 SKKRMQNVTNTAIALSFLVYFVSALFGYLTFYDKVESELLQGYSKYLPHDVIVMAVKLCI 337
Query: 1102 XXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFG 1281
FP R+AL +LF + FSW RH VP IR++FG
Sbjct: 338 LFAVLLTAPLIHFPARKALMMILFSNYPFSWIRHSLTTAALNAIIVVLAIYVPDIRNVFG 397
Query: 1282 VIGSTSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
V+G++++ LIF+ P +FYL++ E SW K+ AL + G +
Sbjct: 398 VVGASTSTCLIFVFPGLFYLKL---SREDFLSWKKLGALFLLLTGAV 441
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,898,742
Number of extensions: 1573311
Number of successful extensions: 6788
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6645
Number of HSP's successfully gapped: 14
Length of query: 486
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 381
Effective length of database: 12,463,779
Effective search space: 4748699799
Effective search space used: 4748699799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008955
(1459 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_277053.2| sodium-coupled neutral amino acid transporter 5... 661 0.0
Alignment gi|NP_006832.1| sodium-coupled neutral amino acid transporter 3... 391 e-109
Alignment gi|NP_061849.2| sodium-coupled neutral amino acid transporter 2... 303 2e-82
Alignment gi|NP_001137296.1| sodium-coupled neutral amino acid transporte... 288 1e-77
Alignment gi|NP_060488.2| sodium-coupled neutral amino acid transporter 4... 288 1e-77
Alignment gi|NP_001070952.1| sodium-coupled neutral amino acid transporte... 266 5e-71
Alignment gi|NP_109599.3| sodium-coupled neutral amino acid transporter 1... 266 5e-71
Alignment gi|NP_722518.2| probable sodium-coupled neutral amino acid tran... 259 4e-69
Alignment gi|NP_001166173.1| probable sodium-coupled neutral amino acid t... 256 5e-68
Alignment gi|NP_001033073.1| putative sodium-coupled neutral amino acid t... 56 1e-07
>ref|NP_277053.2| sodium-coupled neutral amino acid transporter 5 [Homo sapiens].
Length = 472
Score = 661 bits (1705), Expect = 0.0
Identities = 344/460 (74%), Positives = 353/460 (76%), Gaps = 1/460 (0%)
Frame = +1
Query: 76 MELQDPKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNA 255
MELQDPKMNGALP AV YRQEREGFLPS PAPG KP QFMDFEGKTSFGMSVFNLSNA
Sbjct: 1 MELQDPKMNGALPSDAVGYRQEREGFLPSRGPAPGSKPVQFMDFEGKTSFGMSVFNLSNA 60
Query: 256 IMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALG 435
IMGSGILGLAYAMAHTGV SSYSIHLLLTCAG+ GIRAYEQLGQRA G
Sbjct: 61 IMGSGILGLAYAMAHTGVIFFLALLLCIALLSSYSIHLLLTCAGIAGIRAYEQLGQRAFG 120
Query: 436 PAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFLKGNXXXXXXXXX 615
PAGKVVVA VICLHNVGAMSSYLFIIKSELPLVIGTFL MDPEGDWFLKGN
Sbjct: 121 PAGKVVVATVICLHNVGAMSSYLFIIKSELPLVIGTFLYMDPEGDWFLKGNLLIIIVSVL 180
Query: 616 XXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPT 795
ALM+H CMLFFL+SVIYKKFQLGC IGHNETA+ES+ LP+
Sbjct: 181 IILPLALMKHLGYLGYTSGLSLTCMLFFLVSVIYKKFQLGCAIGHNETAMESEALVGLPS 240
Query: 796 QGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGA 975
QGLN+SCEAQMFT DSQM YTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGA
Sbjct: 241 QGLNSSCEAQMFTVDSQMSYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGA 300
Query: 976 MFCMYALTATFGYLTFYSSVEAEMLHMYSQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRA 1155
MFCMY LTATFGYLTFYSSV+AEMLHMYSQ+D FPIRRA
Sbjct: 301 MFCMYGLTATFGYLTFYSSVKAEMLHMYSQKDPLILCVRLAVLLAVTLTVPVVLFPIRRA 360
Query: 1156 LQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIF 1335
LQQLLFP KAFSWPRH CVPTIRDIFGVIGSTSAPSLIFILPSIF
Sbjct: 361 LQQLLFPGKAFSWPRHVAIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIFILPSIF 420
Query: 1336 YLRIVPSEVEPLYSWPKIXALCFGVLGVLSWHQS-RFMFA 1452
YLRIVPSEVEP SWPKI ALCFGVLGVL S FMFA
Sbjct: 421 YLRIVPSEVEPFLSWPKIQALCFGVLGVLFMAVSLGFMFA 460
>ref|NP_006832.1| sodium-coupled neutral amino acid transporter 3 [Homo sapiens].
Length = 504
Score = 391 bits (1005), Expect = e-109
Identities = 231/488 (47%), Positives = 284/488 (58%), Gaps = 14/488 (2%)
Frame = +1
Query: 1 VPPPAGSQSPIPELLPLQKLRGAGRMELQDPKMNGALPRGAVDYRQEREGFLPSHSPAPG 180
VP S+ +P + P+ AG ++DP + E + FL +P
Sbjct: 13 VPNGKHSEGLLPVITPM-----AGNQRVEDPARSC----------MEGKSFLQK---SPS 54
Query: 181 RKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYS 360
++P F DFEGKTSFGMSVFNLSNAIMGSGILGLAYAMA+TG+ SSYS
Sbjct: 55 KEP-HFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYS 113
Query: 361 IHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIG 540
IHLLL +GVVGIRAYEQLG RA G GK+ A I L N+GAMSSYL+IIKSELPLVI
Sbjct: 114 IHLLLKSSGVVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQ 173
Query: 541 TFLDMDPE-GDWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIY 717
TFL+++ + DW++ GN ALMR CM+FFLI+VIY
Sbjct: 174 TFLNLEEKTSDWYMNGNYLVILVSVTIILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIY 233
Query: 718 KKFQLGCVI--GHNETA--------VESKGPSSLPTQGLNTSCEAQMFTADSQMFYTVPI 867
KKF + C + N T V+ K + + + C FT +SQ YT+PI
Sbjct: 234 KKFHVPCPLPPNFNNTTGNFSHVEIVKEKVQLQVEPEA-SAFCTPSYFTLNSQTAYTIPI 292
Query: 868 MAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEM 1047
MAFAFVCHPEVLPIYTEL PSK++MQ ++N+SI M+ MY L A FGYLTFY+ VE+E+
Sbjct: 293 MAFAFVCHPEVLPIYTELKDPSKKKMQHISNLSIAVMYIMYFLAALFGYLTFYNGVESEL 352
Query: 1048 LHMYSQQ---DXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXX 1218
LH YS+ D FP+RRA+QQ+LFP++ FSW RH
Sbjct: 353 LHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRAIQQMLFPNQEFSWLRHVLIAV 412
Query: 1219 XXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXAL 1398
P I IFGVIG+TSAP LIFI P+IFY RI+P+E EP S PKI AL
Sbjct: 413 GLLTCINLLVIFAPNILGIFGVIGATSAPFLIFIFPAIFYFRIMPTEKEPARSTPKILAL 472
Query: 1399 CFGVLGVL 1422
CF +LG L
Sbjct: 473 CFAMLGFL 480
>ref|NP_061849.2| sodium-coupled neutral amino acid transporter 2 [Homo sapiens].
Length = 506
Score = 303 bits (777), Expect = 2e-82
Identities = 195/458 (42%), Positives = 239/458 (52%), Gaps = 14/458 (3%)
Frame = +1
Query: 91 PKMNGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSG 270
P AL D E + FL + + T+F G TSFGMSVFNLSNAI+GSG
Sbjct: 31 PTKQAALKSHYADVDPENQNFLLESNLGKKKYETEF--HPGTTSFGMSVFNLSNAIVGSG 88
Query: 271 ILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKV 450
ILGL+YAMA+TG+ S YS+HLLL A G YEQLG +A G GK+
Sbjct: 89 ILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQLGYKAFGLVGKL 148
Query: 451 VVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDM-DPEGDWFLKGNXXXXXXXXXXXXX 627
+ I + N+GAMSSYLFI+K ELPLVI ++ D G W+L GN
Sbjct: 149 AASGSITMQNIGAMSSYLFIVKYELPLVIQALTNIEDKTGLWYLNGNYLVLLVSLVVILP 208
Query: 628 XALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGH----NETAVESKGPSSLPT 795
+L R+ CM+FFLI VI KKFQ+ C + NET + +
Sbjct: 209 LSLFRNLGYLGYTSGLSLLCMVFFLIVVICKKFQVPCPVEAALIINETINTTLTQPTALV 268
Query: 796 QGL------NTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVA 957
L N SC F +SQ Y VPI+ F+FVCHP VLPIY EL S+RRM V+
Sbjct: 269 PALSHNVTENDSCRPHYFIFNSQTVYAVPILIFSFVCHPAVLPIYEELKDRSRRRMMNVS 328
Query: 958 NVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQ---QDXXXXXXXXXXXXXXXXXXX 1128
+S AMF MY L A FGYLTFY VE+E+LH YS D
Sbjct: 329 KISFFAMFLMYLLAALFGYLTFYEHVESELLHTYSSILGTDILLLIVRLAVLMAVTLTVP 388
Query: 1129 XXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPS 1308
FPIR ++ LL SK FSW RH VPTIRDIFG IG+++A
Sbjct: 389 VVIFPIRSSVTHLLCASKDFSWWRHSLITVSILAFTNLLVIFVPTIRDIFGFIGASAASM 448
Query: 1309 LIFILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
LIFILPS FY+++V + EP+ S KI AL F + GVL
Sbjct: 449 LIFILPSAFYIKLV--KKEPMKSVQKIGALFFLLSGVL 484
>ref|NP_001137296.1| sodium-coupled neutral amino acid transporter 4 [Homo sapiens].
Length = 547
Score = 288 bits (736), Expect = 1e-77
Identities = 182/453 (40%), Positives = 234/453 (51%), Gaps = 50/453 (11%)
Frame = +1
Query: 211 GKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGV 390
G TSFGMS FNLSNAIMGSGILGL+YAMA+TG+ S YS+HLLL A
Sbjct: 73 GTTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAILSLYSVHLLLKTAKE 132
Query: 391 VGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-G 567
G YE+LG++A G GK+ I + N+GAMSSYLFIIK ELP VI F+ ++ G
Sbjct: 133 GGSLIYEKLGEKAFGWPGKIGAFVSITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTG 192
Query: 568 DWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC--- 738
+W+L GN +L+++ CM+FF+ VIYKKFQ+ C
Sbjct: 193 EWYLNGNYLIIFVSVGIILPLSLLKNLGYLGYTSGFSLTCMVFFVSVVIYKKFQIPCPLP 252
Query: 739 VIGH-------NETAV------------------------------ESKGPSSLPTQGL- 804
V+ H N T E++ SL G+
Sbjct: 253 VLDHSVGNLSFNNTLPMHVVMLPNNSESSDVNFMMDYTHRNPAGLDENQAKGSLHDSGVE 312
Query: 805 -----NTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSI 969
+ CE + F +S+ Y +PI+ FAFVCHPEVLPIY+EL S+R+MQ V+N+SI
Sbjct: 313 YEAHSDDKCEPKYFVFNSRTAYAIPILVFAFVCHPEVLPIYSELKDRSRRKMQTVSNISI 372
Query: 970 GAMFCMYALTATFGYLTFYSSVEAEMLHMYSQ---QDXXXXXXXXXXXXXXXXXXXXXXF 1140
M MY L A FGYLTFY VE E+LH YS+ D F
Sbjct: 373 TGMLVMYLLAALFGYLTFYGEVEDELLHAYSKVYTLDIPLLMVRLAVLVAVTLTVPIVLF 432
Query: 1141 PIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFI 1320
PIR ++ LLFP + FSW RH VPTI+ IFG IG++SA LIFI
Sbjct: 433 PIRTSVITLLFPKRPFSWIRHFLIAAVLIALNNVLVILVPTIKYIFGFIGASSATMLIFI 492
Query: 1321 LPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGV 1419
LP++FYL++V E S K+ AL F V+G+
Sbjct: 493 LPAVFYLKLVKKET--FRSPQKVGALIFLVVGI 523
>ref|NP_060488.2| sodium-coupled neutral amino acid transporter 4 [Homo sapiens].
Length = 547
Score = 288 bits (736), Expect = 1e-77
Identities = 182/453 (40%), Positives = 234/453 (51%), Gaps = 50/453 (11%)
Frame = +1
Query: 211 GKTSFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGV 390
G TSFGMS FNLSNAIMGSGILGL+YAMA+TG+ S YS+HLLL A
Sbjct: 73 GTTSFGMSSFNLSNAIMGSGILGLSYAMANTGIILFIIMLLAVAILSLYSVHLLLKTAKE 132
Query: 391 VGIRAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-G 567
G YE+LG++A G GK+ I + N+GAMSSYLFIIK ELP VI F+ ++ G
Sbjct: 133 GGSLIYEKLGEKAFGWPGKIGAFVSITMQNIGAMSSYLFIIKYELPEVIRAFMGLEENTG 192
Query: 568 DWFLKGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGC--- 738
+W+L GN +L+++ CM+FF+ VIYKKFQ+ C
Sbjct: 193 EWYLNGNYLIIFVSVGIILPLSLLKNLGYLGYTSGFSLTCMVFFVSVVIYKKFQIPCPLP 252
Query: 739 VIGH-------NETAV------------------------------ESKGPSSLPTQGL- 804
V+ H N T E++ SL G+
Sbjct: 253 VLDHSVGNLSFNNTLPMHVVMLPNNSESSDVNFMMDYTHRNPAGLDENQAKGSLHDSGVE 312
Query: 805 -----NTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSI 969
+ CE + F +S+ Y +PI+ FAFVCHPEVLPIY+EL S+R+MQ V+N+SI
Sbjct: 313 YEAHSDDKCEPKYFVFNSRTAYAIPILVFAFVCHPEVLPIYSELKDRSRRKMQTVSNISI 372
Query: 970 GAMFCMYALTATFGYLTFYSSVEAEMLHMYSQ---QDXXXXXXXXXXXXXXXXXXXXXXF 1140
M MY L A FGYLTFY VE E+LH YS+ D F
Sbjct: 373 TGMLVMYLLAALFGYLTFYGEVEDELLHAYSKVYTLDIPLLMVRLAVLVAVTLTVPIVLF 432
Query: 1141 PIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFI 1320
PIR ++ LLFP + FSW RH VPTI+ IFG IG++SA LIFI
Sbjct: 433 PIRTSVITLLFPKRPFSWIRHFLIAAVLIALNNVLVILVPTIKYIFGFIGASSATMLIFI 492
Query: 1321 LPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGV 1419
LP++FYL++V E S K+ AL F V+G+
Sbjct: 493 LPAVFYLKLVKKET--FRSPQKVGALIFLVVGI 523
>ref|NP_001070952.1| sodium-coupled neutral amino acid transporter 1 [Homo sapiens].
Length = 487
Score = 266 bits (679), Expect = 5e-71
Identities = 165/443 (37%), Positives = 232/443 (52%), Gaps = 2/443 (0%)
Frame = +1
Query: 100 NGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILG 279
NG + + R+ R SH +K +++ G TS GMSVFNLSNAIMGSGILG
Sbjct: 36 NGQINSKFISDRESRRSLTNSHLEK--KKCDEYIP--GTTSLGMSVFNLSNAIMGSGILG 91
Query: 280 LAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVA 459
LA+A+A+TG+ S YSI+LLL C+ G YE+LG++ G GK V+
Sbjct: 92 LAFALANTGILLFLVLLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKFVIF 151
Query: 460 AVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-GDWFLKGNXXXXXXXXXXXXXXAL 636
L N GAM SYLFI+K+ELP I + + W++ G L
Sbjct: 152 GATSLQNTGAMLSYLFIVKNELPSAIKFLMGKEETFSAWYVDGRVLVVIVTFGIILPLCL 211
Query: 637 MRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPTQGLNTSC 816
+++ CM+FFLI VIYKKFQ+ C++ + + + ++ +C
Sbjct: 212 LKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQIPCIVPELNSTISANSTNA-------DTC 264
Query: 817 EAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYAL 996
+ T +S+ Y +P +AFAFVCHP VLPIY+EL S+++MQ V+N+S AMF MY L
Sbjct: 265 TPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFL 324
Query: 997 TATFGYLTFYSSVEAEMLHMY-SQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLF 1173
TA FGYLTFY +V++++LH Y S+ D F +R +L +L
Sbjct: 325 TAIFGYLTFYDNVQSDLLHKYQSKDDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAK 384
Query: 1174 PSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVP 1353
+K F+ RH +P+++DIFGV+G TSA LIFILPS YL+I
Sbjct: 385 KTK-FNLCRHTVVTCILLVVINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITD 443
Query: 1354 SEVEPLYSWPKIXALCFGVLGVL 1422
+ + +I A F LGVL
Sbjct: 444 QDGDK--GTQRIWAALFLGLGVL 464
>ref|NP_109599.3| sodium-coupled neutral amino acid transporter 1 [Homo sapiens].
Length = 487
Score = 266 bits (679), Expect = 5e-71
Identities = 165/443 (37%), Positives = 232/443 (52%), Gaps = 2/443 (0%)
Frame = +1
Query: 100 NGALPRGAVDYRQEREGFLPSHSPAPGRKPTQFMDFEGKTSFGMSVFNLSNAIMGSGILG 279
NG + + R+ R SH +K +++ G TS GMSVFNLSNAIMGSGILG
Sbjct: 36 NGQINSKFISDRESRRSLTNSHLEK--KKCDEYIP--GTTSLGMSVFNLSNAIMGSGILG 91
Query: 280 LAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGIRAYEQLGQRALGPAGKVVVA 459
LA+A+A+TG+ S YSI+LLL C+ G YE+LG++ G GK V+
Sbjct: 92 LAFALANTGILLFLVLLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKFVIF 151
Query: 460 AVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPE-GDWFLKGNXXXXXXXXXXXXXXAL 636
L N GAM SYLFI+K+ELP I + + W++ G L
Sbjct: 152 GATSLQNTGAMLSYLFIVKNELPSAIKFLMGKEETFSAWYVDGRVLVVIVTFGIILPLCL 211
Query: 637 MRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNETAVESKGPSSLPTQGLNTSC 816
+++ CM+FFLI VIYKKFQ+ C++ + + + ++ +C
Sbjct: 212 LKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQIPCIVPELNSTISANSTNA-------DTC 264
Query: 817 EAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYAL 996
+ T +S+ Y +P +AFAFVCHP VLPIY+EL S+++MQ V+N+S AMF MY L
Sbjct: 265 TPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFL 324
Query: 997 TATFGYLTFYSSVEAEMLHMY-SQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLLF 1173
TA FGYLTFY +V++++LH Y S+ D F +R +L +L
Sbjct: 325 TAIFGYLTFYDNVQSDLLHKYQSKDDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAK 384
Query: 1174 PSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVP 1353
+K F+ RH +P+++DIFGV+G TSA LIFILPS YL+I
Sbjct: 385 KTK-FNLCRHTVVTCILLVVINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITD 443
Query: 1354 SEVEPLYSWPKIXALCFGVLGVL 1422
+ + +I A F LGVL
Sbjct: 444 QDGDK--GTQRIWAALFLGLGVL 464
>ref|NP_722518.2| probable sodium-coupled neutral amino acid transporter 6 isoform 2
[Homo sapiens].
Length = 456
Score = 259 bits (662), Expect = 4e-69
Identities = 153/404 (37%), Positives = 206/404 (50%), Gaps = 3/404 (0%)
Frame = +1
Query: 220 SFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGI 399
SFG+SVFNL NAIMGSGILGLAY +A+TGV +SYS+HLLL+ +
Sbjct: 46 SFGLSVFNLMNAIMGSGILGLAYVLANTGVFGFSFLLLTVALLASYSVHLLLSMCIQTAV 105
Query: 400 RAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFL 579
+YE LG A G GK+VVA I + N+GAMSSYL IIK+ELP I FL D W+L
Sbjct: 106 TSYEDLGLFAFGLPGKLVVAGTIIIQNIGAMSSYLLIIKTELPAAIAEFLTGDYSRYWYL 165
Query: 580 KGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNET 759
G AL+ M+FF + VI KK+ + C + N
Sbjct: 166 DGQTLLIIICVGIVFPLALLPKIGFLGYTSSLSFFFMMFFALVVIIKKWSIPCPLTLNYV 225
Query: 760 AVESKGPSSLPTQGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKR 939
KG + C+ ++F + Y +P MAF+F+CH +LPIY EL PSK+
Sbjct: 226 ---EKG---FQISNVTDDCKPKLFHFSKESAYALPTMAFSFLCHTSILPIYCELQSPSKK 279
Query: 940 RMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQ---QDXXXXXXXXXXXXX 1110
RMQ V N +I F +Y ++A FGYLTFY VE+E+L YS+ D
Sbjct: 280 RMQNVTNTAIALSFLIYFISALFGYLTFYDKVESELLKGYSKYLSHDVVVMTVKLCILFA 339
Query: 1111 XXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIG 1290
FP R+A+ + F + FSW RH VP IR++FGV+G
Sbjct: 340 VLLTVPLIHFPARKAVTMMFFSNFPFSWIRHFLITLALNIIIVLLAIYVPDIRNVFGVVG 399
Query: 1291 STSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXALCFGVLGVL 1422
++++ LIFI P +FYL++ E SW K+ A + G+L
Sbjct: 400 ASTSTCLIFIFPGLFYLKL---SREDFLSWKKLGAFVLLIFGIL 440
>ref|NP_001166173.1| probable sodium-coupled neutral amino acid transporter 6 isoform 1
[Homo sapiens].
Length = 521
Score = 256 bits (653), Expect = 5e-68
Identities = 155/411 (37%), Positives = 207/411 (50%), Gaps = 7/411 (1%)
Frame = +1
Query: 220 SFGMSVFNLSNAIMGSGILGLAYAMAHTGVXXXXXXXXXXXXXSSYSIHLLLTCAGVVGI 399
SFG+SVFNL NAIMGSGILGLAY +A+TGV +SYS+HLLL+ +
Sbjct: 46 SFGLSVFNLMNAIMGSGILGLAYVLANTGVFGFSFLLLTVALLASYSVHLLLSMCIQTAV 105
Query: 400 RAYEQLGQRALGPAGKVVVAAVICLHNVGAMSSYLFIIKSELPLVIGTFLDMDPEGDWFL 579
+YE LG A G GK+VVA I + N+GAMSSYL IIK+ELP I FL D W+L
Sbjct: 106 TSYEDLGLFAFGLPGKLVVAGTIIIQNIGAMSSYLLIIKTELPAAIAEFLTGDYSRYWYL 165
Query: 580 KGNXXXXXXXXXXXXXXALMRHXXXXXXXXXXXXXCMLFFLISVIYKKFQLGCVIGHNET 759
G AL+ M+FF + VI KK+ + C + N
Sbjct: 166 DGQTLLIIICVGIVFPLALLPKIGFLGYTSSLSFFFMMFFALVVIIKKWSIPCPLTLNYV 225
Query: 760 AVESKGPSSLPTQGLNTSCEAQMFTADSQMFYTVPIMAFAFVCHPEVLPIYTELCRPSKR 939
KG + C+ ++F + Y +P MAF+F+CH +LPIY EL PSK+
Sbjct: 226 ---EKG---FQISNVTDDCKPKLFHFSKESAYALPTMAFSFLCHTSILPIYCELQSPSKK 279
Query: 940 RMQAVANVSIGAMFCMYALTATFGYLTFYSSVEAEMLHMYSQ---QDXXXXXXXXXXXXX 1110
RMQ V N +I F +Y ++A FGYLTFY VE+E+L YS+ D
Sbjct: 280 RMQNVTNTAIALSFLIYFISALFGYLTFYDKVESELLKGYSKYLSHDVVVMTVKLCILFA 339
Query: 1111 XXXXXXXXXFPIRRALQQLLFPSKAFSWPRHXXXXXXXXXXXXXXXXCVPTIRDIFGVIG 1290
FP R+A+ + F + FSW RH VP IR++FGV+G
Sbjct: 340 VLLTVPLIHFPARKAVTMMFFSNFPFSWIRHFLITLALNIIIVLLAIYVPDIRNVFGVVG 399
Query: 1291 STSAPSLIFILPSIFYLRIVPSEVEPLYSWPKIXALC----FGVLGVLSWH 1431
++++ LIFI P +FYL++ E SW K+ L GV+S H
Sbjct: 400 ASTSTCLIFIFPGLFYLKL---SREDFLSWKKLGGLILSHRLACSGVISAH 447
>ref|NP_001033073.1| putative sodium-coupled neutral amino acid transporter 10 isoform a
[Homo sapiens].
Length = 1119
Score = 55.8 bits (133), Expect = 1e-07
Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 10/177 (5%)
Frame = +1
Query: 847 MFYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYALTATFGYLTFY 1026
+F +PI +F C +VLP Y L PS + M ++ S+ + Y + FGY++F
Sbjct: 194 VFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTTFYVMVGFFGYVSFT 253
Query: 1027 SSVEAEMLHMYSQQDXXXXXXXXXXXXXXXXXXXXXXFPIRRALQQLL---------FPS 1179
+ +L M+ + P R+AL LL F +
Sbjct: 254 EATAGNVL-MHFPSNLVTEMLRVGFMMSVAVGFPMMILPCRQALSTLLCEQQQKDGTFAA 312
Query: 1180 KAFSWP-RHXXXXXXXXXXXXXXXXCVPTIRDIFGVIGSTSAPSLIFILPSIFYLRI 1347
+ P R +P + I G+ G+T + FI P++ Y +I
Sbjct: 313 GGYMPPLRFKALTLSVVFGTMVGGILIPNVETILGLTGATMGSLICFICPALIYKKI 369
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,629,345
Number of extensions: 1892574
Number of successful extensions: 7853
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7752
Number of HSP's successfully gapped: 13
Length of query: 486
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 380
Effective length of database: 14,802,980
Effective search space: 5625132400
Effective search space used: 5625132400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008955
(1459 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 289 2e-75
Sscrofa_Chr13 137 2e-29
Sscrofa_Chr05 66 6e-08
>Sscrofa_ChrX
|| Length = 144288218
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 1144 atccgccgggctctgcagcaactgctcttcccaagcaaagccttcagctggccacgccat 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47549288 atccgccgggctctgcagcaactgctcttcccaagcaaagccttcagctggccacgccat 47549229
Query: 1204 gtagccatagccctgatcctgcttgtcttggtcaatgtcctcgtcatctgcgtgccaacc 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47549228 gtagccatagccctgatcctgcttgtcttggtcaatgtcctcgtcatctgcgtgccaacc 47549169
Query: 1264 atccgggatatctttggggttattgg 1289
||||||||||||||||||||||||||
Sbjct: 47549168 atccgggatatctttggggttattgg 47549143
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 708 ggtcatctataagaagttccagcttggctgtgtcataggccacaatgagacggccgtgga 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47551880 ggtcatctataagaagttccagcttggctgtgtcataggccacaatgagacggccgtgga 47551821
Query: 768 gagtaagggcccctcaagccttcccacccaggggctcaacacaagctgtgaagcccagat 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47551820 gagtaagggcccctcaagccttcccacccaggggctcaacacaagctgtgaagcccagat 47551761
Query: 828 gttcacagctgactcacag 846
|||||||||||||||||||
Sbjct: 47551760 gttcacagctgactcacag 47551742
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 205 ttcgaggggaagacatcgtttggaatgtcagtgttcaacctcagcaacgccatcatgggc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47556232 ttcgaggggaagacatcgtttggaatgtcagtgttcaacctcagcaacgccatcatgggc 47556173
Query: 265 agcggcatcctggggctggcctatgccatggcccacacgggggtcctcttcttcttg 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47556172 agcggcatcctggggctggcctatgccatggcccacacgggggtcctcttcttcttg 47556116
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 1028 gcagcgtggaggcagagatgctgcacatgtacagccaacaggacctgctcatcctctgtg 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47550204 gcagcgtggaggcagagatgctgcacatgtacagccaacaggacctgctcatcctctgtg 47550145
Query: 1088 tgcgccttgccgtgctgctcgctgtgactctcactgtgccagttgtgctgttccct 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47550144 tgcgccttgccgtgctgctcgctgtgactctcactgtgccagttgtgctgttccct 47550089
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 1288 gggtccacctcagcccccagcctcattttcatccttcccagcatcttctacctccgcatt 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47549050 gggtccacctcagcccccagcctcattttcatccttcccagcatcttctacctccgcatt 47548991
Query: 1348 gtaccctctgaggtggagcctctctactcctggcccaagatcca 1391
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47548990 gtaccctctgaggtggagcctctctactcctggcccaagatcca 47548947
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 926 ggccctccaagcgcagaatgcaggccgtggccaacgtgtccattggggccatgttctgca 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47550563 ggccctccaagcgcagaatgcaggccgtggccaacgtgtccattggggccatgttctgca 47550504
Query: 986 tgtatgcgctcacagccacctttggatacctcaccttctacag 1028
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47550503 tgtatgcgctcacagccacctttggatacctcaccttctacag 47550461
Score = 188 bits (95), Expect = 6e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 393 aggcatccgagcctatgaacagctgggacagagggcgctggggcctgcggggaaggtagt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47555356 aggcatccgagcctatgaacagctgggacagagggcgctggggcctgcggggaaggtagt 47555297
Query: 453 ggtggccgcggtcatctgtctgcacaatgttgggg 487
|||||||||||||||||||||||||||||||||||
Sbjct: 47555296 ggtggccgcggtcatctgtctgcacaatgttgggg 47555262
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 566 gggactggttcttgaaaggaaacctcctcatcattatcgtcagtgtgttaatcatcctgc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47553025 gggactggttcttgaaaggaaacctcctcatcattatcgtcagtgtgttaatcatcctgc 47552966
Query: 626 cgctggccctcatgagacacttggg 650
|||||||||||||||||||||||||
Sbjct: 47552965 cgctggccctcatgagacacttggg 47552941
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 844 cagatgttctacacagtgcccatcatggctttcgccttcgtctgccaccccgaggtgctg 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47551527 cagatgttctacacagtgcccatcatggctttcgccttcgtctgccaccccgaggtgctg 47551468
Query: 904 cccatctacacggaactttgccgg 927
||||||||||||||||||||||||
Sbjct: 47551467 cccatctacacggaactttgccgg 47551444
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 487 gccatgtccagttacctgttcatcatcaaatccgaactccccctggttatcggcactttc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47555135 gccatgtccagttacctgttcatcatcaaatccgaactccccctggttatcggcactttc 47555076
Query: 547 ctggacatggaccctgagggg 567
|||||||||||||||||||||
Sbjct: 47555075 ctggacatggaccctgagggg 47555055
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 129 ctacaggcaggagcgagagggcttcctgcccagccatagtcctgctccagggaggaagcc 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47556711 ctacaggcaggagcgagagggcttcctgcccagccatagtcctgctccagggaggaagcc 47556652
Query: 189 aacccagttcatggat 204
||||||||||||||||
Sbjct: 47556651 aacccagttcatggat 47556636
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 321 ggccctgctgctctgcattgctcttctgtcttcgtactccatccatctcctgctgacctg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47556024 ggccctgctgctctgcattgctcttctgtcttcgtactccatccatctcctgctgacctg 47555965
Query: 381 tgctggcgttgtagg 395
|||||||||||||||
Sbjct: 47555964 tgctggcgttgtagg 47555950
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 1 gtgccaccgccggcggggtcccagagccctattcctgagttgctgccgcttcagaagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47558530 gtgccaccgccggcggggtcccagagccctattcctgagttgctgccgcttcagaagctg 47558471
Query: 61 agaggagcagggagg 75
|||||||||||||||
Sbjct: 47558470 agaggagcagggagg 47558456
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 649 ggctacctggggtataccagtggtctctctctgacctgtatgctgtttttcctcatttcg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47552040 ggctacctggggtataccagtggtctctctctgacctgtatgctgtttttcctcatttcg 47551981
Query: 709 gt 710
||
Sbjct: 47551980 gt 47551979
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 73 aggatggaactgcaggatccgaagatgaatggagccctcccccggggtgctgtgga 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47556864 aggatggaactgcaggatccgaagatgaatggagccctcccccggggtgctgtgga 47556809
Score = 79.8 bits (40), Expect = 4e-12
Identities = 61/64 (95%), Gaps = 3/64 (4%)
Strand = Plus / Minus
Query: 1393 gctctgtgctttggtgtcctgggggtcctc-tcatggc-atcagtctagg-ttcatgttt 1449
|||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct: 47548190 gctctgtgctttggtgtcctgggggtcctcttcatggcaatcagtctaggtttcatgttt 47548131
Query: 1450 gcca 1453
||||
Sbjct: 47548130 gcca 47548127
>Sscrofa_Chr13
|| Length = 218635234
Score = 137 bits (69), Expect = 2e-29
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 205 ttcgaggggaagacatcgtttggaatgtcagtgttcaacctcagcaacgccatcatgggc 264
||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 35872420 ttcgaggggaagacatcattcggtatgtcagtgttcaaccttagcaacgccatcatgggc 35872479
Query: 265 agcggcatcctggggctggcctatgccatggcc 297
||||||||||||||||| ||||| |||||||||
Sbjct: 35872480 agcggcatcctggggctcgcctacgccatggcc 35872512
Score = 83.8 bits (42), Expect = 2e-13
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 862 cccatcatggctttcgccttcgtctgccaccccgaggtgctgcccatcta 911
||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 35875416 cccatcatggcctttgccttcgtctgccaccccgaggtgctgcccatcta 35875465
>Sscrofa_Chr05
|| Length = 111506441
Score = 65.9 bits (33), Expect = 6e-08
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 238 ttcaacctcagcaacgccatcatgggcagcggcatcctggggctggcctatgccatggcc 297
|||||||| || || |||||||||||||| || |||||||| ||| ||||||||||||||
Sbjct: 80421349 ttcaacctgagtaatgccatcatgggcagtggaatcctgggcctgtcctatgccatggcc 80421290
Query: 298 cacac 302
||||
Sbjct: 80421289 aacac 80421285
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,692,145
Number of extensions: 658
Number of successful extensions: 658
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 658
Number of HSP's successfully gapped: 19
Length of query: 1459
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1438
Effective length of database: 2,808,413,156
Effective search space: 4038498118328
Effective search space used: 4038498118328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)