Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008957
(717 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015512.1| 60S ribosomal protein L26 [Bos taurus]. 253 1e-67
Alignment gi|XP_002692487.1| PREDICTED: ribosomal protein L26-like [Bos t... 249 2e-66
Alignment gi|XP_001249715.1| PREDICTED: ribosomal protein L26-like isofor... 249 2e-66
Alignment gi|XP_001790268.1| PREDICTED: ribosomal protein L26-like isofor... 249 2e-66
Alignment gi|XP_002696318.1| PREDICTED: ribosomal protein L26-like 1 [Bos... 243 1e-64
Alignment gi|NP_001179766.2| ribosomal protein L26-like 1 [Bos taurus]. 204 5e-53
>ref|NP_001015512.1| 60S ribosomal protein L26 [Bos taurus].
Length = 145
Score = 253 bits (645), Expect = 1e-67
Identities = 128/145 (88%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
>ref|XP_002692487.1| PREDICTED: ribosomal protein L26-like [Bos taurus].
Length = 154
Score = 249 bits (635), Expect = 2e-66
Identities = 126/145 (86%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTS+RSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSNRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKK+VIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKHVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
>ref|XP_001249715.1| PREDICTED: ribosomal protein L26-like isoform 1 [Bos taurus].
Length = 154
Score = 249 bits (635), Expect = 2e-66
Identities = 126/145 (86%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTS+RSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSNRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKK+VIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKHVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
>ref|XP_001790268.1| PREDICTED: ribosomal protein L26-like isoform 3 [Bos taurus].
Length = 154
Score = 249 bits (635), Expect = 2e-66
Identities = 126/145 (86%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTS+RSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSNRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKK+VIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKHVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
>ref|XP_002696318.1| PREDICTED: ribosomal protein L26-like 1 [Bos taurus].
Length = 148
Score = 243 bits (620), Expect = 1e-64
Identities = 126/148 (85%), Positives = 129/148 (87%), Gaps = 3/148 (2%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSK---VVITXXXXXXXXXX 406
HYKGQQIGKVVQVYRKKYVI+IERVQREKA+GTTVHVG+HPS VVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIHIERVQREKADGTTVHVGLHPSSLYAVVITRLKLDKDRKK 120
Query: 407 XXXXXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEELIEKMQE
Sbjct: 121 ILERKAKSRQVGKEKGKYKEELIEKMQE 148
>ref|NP_001179766.2| ribosomal protein L26-like 1 [Bos taurus].
Length = 108
Score = 204 bits (520), Expect = 5e-53
Identities = 99/103 (96%), Positives = 103/103 (100%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSK 364
HYKGQQIGKVVQVYRKKYVI+IERVQREKA+GTTVHVG+HPS+
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIHIERVQREKADGTTVHVGLHPSR 103
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,248,334
Number of extensions: 626315
Number of successful extensions: 2292
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2286
Number of HSP's successfully gapped: 6
Length of query: 239
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 140
Effective length of database: 14,405,662
Effective search space: 2016792680
Effective search space used: 2016792680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008957
(717 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850899.1| PREDICTED: similar to 60S ribosomal protein L26... 253 2e-67
Alignment gi|XP_533731.2| PREDICTED: similar to 60S ribosomal protein L26... 253 2e-67
Alignment gi|XP_860503.1| PREDICTED: similar to 60S ribosomal protein L26... 253 2e-67
Alignment gi|XP_536635.1| PREDICTED: similar to 60S ribosomal protein L26... 253 2e-67
Alignment gi|XP_854347.1| PREDICTED: similar to 60S ribosomal protein L26... 60 1e-19
>ref|XP_850899.1| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced
gene 20 protein) (SIG-20) [Canis familiaris].
Length = 145
Score = 253 bits (645), Expect = 2e-67
Identities = 128/145 (88%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
>ref|XP_533731.2| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced
gene 20 protein) (SIG-20) [Canis familiaris].
Length = 145
Score = 253 bits (645), Expect = 2e-67
Identities = 128/145 (88%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
>ref|XP_860503.1| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced
gene 20 protein) (SIG-20) isoform 2 [Canis familiaris].
Length = 145
Score = 253 bits (645), Expect = 2e-67
Identities = 128/145 (88%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
>ref|XP_536635.1| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced
gene 20 protein) (SIG-20) isoform 1 [Canis familiaris].
Length = 145
Score = 253 bits (645), Expect = 2e-67
Identities = 128/145 (88%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
>ref|XP_854347.1| PREDICTED: similar to 60S ribosomal protein L26-like 1 [Canis
familiaris].
Length = 165
Score = 60.5 bits (145), Expect(2) = 1e-19
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3
Query: 156 SPRSCGRSTTFAPCPSARTTRSRWSEDITKVSKLAK 263
+PRSCGRS T +PCPSARTT SRW ED KVSKLA+
Sbjct: 130 TPRSCGRSATSSPCPSARTTGSRWFEDTAKVSKLAR 165
Score = 53.9 bits (128), Expect(2) = 1e-19
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 53 TMKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSP 154
+M FNPF+T S NRKRH NAPSHVRR IMSSP
Sbjct: 96 SMNFNPFLTWGCSTNRKRHVNAPSHVRRNIMSSP 129
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,153,114
Number of extensions: 634162
Number of successful extensions: 2355
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2353
Number of HSP's successfully gapped: 6
Length of query: 239
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 139
Effective length of database: 15,540,904
Effective search space: 2160185656
Effective search space used: 2160185656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008957
(717 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001135462.1| 60S ribosomal protein L26-like 1 [Sus scrofa]. 253 9e-68
Alignment gi|NP_001230387.1| ribosomal protein L26 [Sus scrofa]. 253 9e-68
>ref|NP_001135462.1| 60S ribosomal protein L26-like 1 [Sus scrofa].
Length = 145
Score = 253 bits (645), Expect = 9e-68
Identities = 129/145 (88%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AK RQVGKEKGKYKEELIEKMQE
Sbjct: 121 RKAKFRQVGKEKGKYKEELIEKMQE 145
>ref|NP_001230387.1| ribosomal protein L26 [Sus scrofa].
Length = 145
Score = 253 bits (645), Expect = 9e-68
Identities = 128/145 (88%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,282,565
Number of extensions: 405372
Number of successful extensions: 1471
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1467
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 143
Effective length of database: 8,953,820
Effective search space: 1280396260
Effective search space used: 1280396260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008957
(717 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033106.1| 60S ribosomal protein L26 [Mus musculus]. 253 1e-67
Alignment gi|NP_001171510.1| ribosomal protein L26-like [Mus musculus]. 247 5e-66
>ref|NP_033106.1| 60S ribosomal protein L26 [Mus musculus].
Length = 145
Score = 253 bits (645), Expect = 1e-67
Identities = 128/145 (88%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
>ref|NP_001171510.1| ribosomal protein L26-like [Mus musculus].
Length = 145
Score = 247 bits (631), Expect = 5e-66
Identities = 126/145 (86%), Positives = 128/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDD+VQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDKVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTV VGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVPVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,076,647
Number of extensions: 539470
Number of successful extensions: 1933
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1931
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 141
Effective length of database: 12,674,031
Effective search space: 1787038371
Effective search space used: 1787038371
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008957
(717 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057177.1| 60S ribosomal protein L26-like 1 [Homo sapiens]. 255 3e-68
Alignment gi|NP_000978.1| 60S ribosomal protein L26 [Homo sapiens]. 253 2e-67
>ref|NP_057177.1| 60S ribosomal protein L26-like 1 [Homo sapiens].
Length = 145
Score = 255 bits (651), Expect = 3e-68
Identities = 130/145 (89%), Positives = 130/145 (89%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEELIEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEELIEKMQE 145
>ref|NP_000978.1| 60S ribosomal protein L26 [Homo sapiens].
Length = 145
Score = 253 bits (645), Expect = 2e-67
Identities = 128/145 (88%), Positives = 129/145 (88%)
Frame = +2
Query: 56 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 235
MKFNPFVTSDRSKNRKRHFNAPSH+RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 236 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITXXXXXXXXXXXXX 415
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 416 XXAKSRQVGKEKGKYKEELIEKMQE 490
AKSRQVGKEKGKYKEE IEKMQE
Sbjct: 121 RKAKSRQVGKEKGKYKEETIEKMQE 145
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,763,604
Number of extensions: 625470
Number of successful extensions: 2229
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2225
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 140
Effective length of database: 15,033,728
Effective search space: 2104721920
Effective search space used: 2104721920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008957
(717 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 535 e-149
Sscrofa_Chr12 153 2e-34
Sscrofa_Chr11 143 2e-31
Sscrofa_Chr15 141 6e-31
Sscrofa_Chr02 129 2e-27
gb|GL894759.2| Sus scrofa unplaced genomic scaffold ChrUScaf2643 111 5e-22
Sscrofa_Chr03 98 8e-18
Sscrofa_Chr14 92 5e-16
Sscrofa_Chr13 86 3e-14
Sscrofa_ChrX 76 3e-11
>Sscrofa_Chr16
|| Length = 86898991
Score = 535 bits (270), Expect = e-149
Identities = 308/327 (94%)
Strand = Plus / Minus
Query: 363 aggtagttatcaccaggctaaaactggacaaagatcggnnnnnnnttcttgagcgcaaag 422
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 55581130 aggtagttatcaccaggctaaaactggacaaagatcggaaaaaaattcttgagcgcaaag 55581071
Query: 423 ccaaatctcgacaagttggaaaagagaaaggcaaatataaggaagaacttattgagaaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55581070 ccaaatctcgacaagttggaaaagagaaaggcaaatataaggaagaacttattgagaaaa 55581011
Query: 483 tgcaggagtgaatatacccgttctgcaacatcagtttatctgtagannnnnnnnnnnncc 542
|||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 55581010 tgcaggagtgaatatacccgttctgcaacatcagtttatctgtagattttttttttttcc 55580951
Query: 543 tggtgtgtgttcttttgaaacttttcaagatgtctctgcagcattttgtttccttcctgt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55580950 tggtgtgtgttcttttgaaacttttcaagatgtctctgcagcattttgtttccttcctgt 55580891
Query: 603 ttttgttattgatatgtggctctgtaaatctgctcttgctgttttaataattttatgaat 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55580890 ttttgttattgatatgtggctctgtaaatctgctcttgctgttttaataattttatgaat 55580831
Query: 663 aaaaattggaaatgttttcttgttcca 689
|||||||||||||||||||||||||||
Sbjct: 55580830 aaaaattggaaatgttttcttgttcca 55580804
Score = 359 bits (181), Expect = 1e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 45 cagaggtcaccatgaagttcaaccccttcgtgacttcggaccgcagcaaaaaccgcaaac 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55589768 cagaggtcaccatgaagttcaaccccttcgtgacttcggaccgcagcaaaaaccgcaaac 55589709
Query: 105 gtcatttcaatgccccctcccacgtgcgcaggaagatcatgtcgtctccactctccaagg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55589708 gtcatttcaatgccccctcccacgtgcgcaggaagatcatgtcgtctccactctccaagg 55589649
Query: 165 agctgcggcagaagtacaacgttcgctccatgcccatccgcaaggacgacgaggtccagg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55589648 agctgcggcagaagtacaacgttcgctccatgcccatccgcaaggacgacgaggtccagg 55589589
Query: 225 t 225
|
Sbjct: 55589588 t 55589588
Score = 289 bits (146), Expect = 1e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 222 aggtggtccgaggacattacaaaggtcagcaaattggcaaagtagtccaggtgtacagaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55582214 aggtggtccgaggacattacaaaggtcagcaaattggcaaagtagtccaggtgtacagaa 55582155
Query: 282 agaaatatgtcatctacatcgagcgggtgcagcgggagaaggctaatggtacgactgtcc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55582154 agaaatatgtcatctacatcgagcgggtgcagcgggagaaggctaatggtacgactgtcc 55582095
Query: 342 acgtgggcattcacccgagcaaggta 367
||||||||||||||||||||||||||
Sbjct: 55582094 acgtgggcattcacccgagcaaggta 55582069
Score = 91.7 bits (46), Expect = 5e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 2 acttccggccctgagcagcgcatcgtctgagctctgacggcgccag 47
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55590195 acttccggccctgagcagcgcatcgtctgagctctgacggcgccag 55590150
>Sscrofa_Chr12
|| Length = 63588571
Score = 153 bits (77), Expect = 2e-34
Identities = 122/137 (89%)
Strand = Plus / Minus
Query: 230 cgaggacattacaaaggtcagcaaattggcaaagtagtccaggtgtacagaaagaaatat 289
||||| || ||||| || ||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 56026752 cgagggcactacaaggggcagcagattggcaaagtagtccaggtttacaggaagaaatac 56026693
Query: 290 gtcatctacatcgagcgggtgcagcgggagaaggctaatggtacgactgtccacgtgggc 349
||||||||||| || || ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 56026692 gtcatctacattgaacgagtgcagcgggagaaggctaatggcacaactgtccatgtgggc 56026633
Query: 350 attcacccgagcaaggt 366
|||||||| ||||||||
Sbjct: 56026632 attcaccccagcaaggt 56026616
Score = 115 bits (58), Expect = 3e-23
Identities = 133/158 (84%)
Strand = Plus / Minus
Query: 56 atgaagttcaaccccttcgtgacttcggaccgcagcaaaaaccgcaaacgtcatttcaat 115
||||||||||| || || ||||| || ||||| ||||| ||||| ||| | |||||||||
Sbjct: 56028428 atgaagttcaatccttttgtgacctccgaccgaagcaagaaccgtaaaaggcatttcaat 56028369
Query: 116 gccccctcccacgtgcgcaggaagatcatgtcgtctccactctccaaggagctgcggcag 175
|| || |||||| | ||||||||||| ||||| || || || ||||| |||||| | |||
Sbjct: 56028368 gcaccttcccacattcgcaggaagattatgtcttcccctctttccaaagagctgagacag 56028309
Query: 176 aagtacaacgttcgctccatgcccatccgcaaggacga 213
|||||||| ||||| |||||||||||||| ||||||||
Sbjct: 56028308 aagtacaatgttcgatccatgcccatccgaaaggacga 56028271
Score = 63.9 bits (32), Expect = 1e-07
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 410 cttgagcgcaaagccaaatctcgacaagttggaaaagagaaaggcaaatataaggaagaa 469
||||| || |||||||||||||| ||||| ||||| || || || |||||||||||||||
Sbjct: 56024163 cttgaacgtaaagccaaatctcgccaagtaggaaaggaaaagggaaaatataaggaagaa 56024104
Query: 470 cttattgagaaaatgcagga 489
|||||||| ||||||||
Sbjct: 56024103 accattgagaagatgcagga 56024084
>Sscrofa_Chr11
|| Length = 87690581
Score = 143 bits (72), Expect = 2e-31
Identities = 262/324 (80%), Gaps = 1/324 (0%)
Strand = Plus / Plus
Query: 67 ccccttcgtgacttcggaccgcagcaaaaaccgcaaacgtcatttcaatgccccctccca 126
|||||| |||||||| |||| ||||| |||| ||| | ||||||||||| || || ||
Sbjct: 26540743 cccctttgtgacttctgaccaaagcaagaaccataaatgacatttcaatgcaccatctca 26540802
Query: 127 cgtgcgcaggaagatcatgtcgtctccactctccaaggagctgcggcagaagtacaacgt 186
| | || ||||||| ||||| || | || ||||| | |||| | ||||| ||||| ||
Sbjct: 26540803 cattcgtaggaagactatgtcttcccttctttccaaagggctgagacagaaatacaatgt 26540862
Query: 187 tcgctccatgcccatccgcaaggacgacgaggtccaggtggtccgaggacattacaaagg 246
| | |||||||||||| |||| || || || || ||||| || |||| || ||||||||
Sbjct: 26540863 ttgatccatgcccatctgcaaagatgatgaagttcaggtcgtatgagggcactacaaagg 26540922
Query: 247 tcagcaaattggcaaagtagtccaggtgtacagaaagaaatatgt-catctacatcgagc 305
| ||| |||||||||| ||||||||| ||||| |||||||||| |||||||| || |
Sbjct: 26540923 gcggcagattggcaaagcagtccaggtttacaggaagaaatatgggcatctacactgaac 26540982
Query: 306 gggtgcagcgggagaaggctaatggtacgactgtccacgtgggcattcacccgagcaagg 365
||| ||||||||||||||||||| ||| ||||||| ||||||||| |||| |||||||
Sbjct: 26540983 aagtggagcgggagaaggctaatggcacgcctgtccatgtgggcatttaccccagcaagg 26541042
Query: 366 tagttatcaccaggctaaaactgg 389
| ||||||||||| ||||||||||
Sbjct: 26541043 tggttatcaccagactaaaactgg 26541066
>Sscrofa_Chr15
|| Length = 157681621
Score = 141 bits (71), Expect = 6e-31
Identities = 197/239 (82%)
Strand = Plus / Plus
Query: 158 tccaaggagctgcggcagaagtacaacgttcgctccatgcccatccgcaaggacgacgag 217
||||| |||||| | ||||||||||| ||| | |||||||||||||| ||||| || ||
Sbjct: 114210761 tccaaagagctgagacagaagtacaatgtttgatccatgcccatccgaaaggatgatgaa 114210820
Query: 218 gtccaggtggtccgaggacattacaaaggtcagcaaattggcaaagtagtccaggtgtac 277
|| ||||| || | | |||| |||||||| ||||| | |||||||||| | ||| | |||
Sbjct: 114210821 gttcaggttgtacaaagacaatacaaagggcagcagactggcaaagtaattcagatttac 114210880
Query: 278 agaaagaaatatgtcatctacatcgagcgggtgcagcgggagaaggctaatggtacgact 337
| ||||||||||||||||||| || | |||||| |||||||||| ||||| | ||||
Sbjct: 114210881 gggaagaaatatgtcatctacactgaaagagtgcagtgggagaaggcaaatggcatgact 114210940
Query: 338 gtccacgtgggcattcacccgagcaaggtagttatcaccaggctaaaactggacaaaga 396
| ||| |||||||||||||| |||||||| |||||| | || |||| ||||||||||||
Sbjct: 114210941 gcccatgtgggcattcaccccagcaaggtggttatcgctagactaacactggacaaaga 114210999
Score = 141 bits (71), Expect = 6e-31
Identities = 197/239 (82%)
Strand = Plus / Minus
Query: 158 tccaaggagctgcggcagaagtacaacgttcgctccatgcccatccgcaaggacgacgag 217
||||| |||||| | ||||||||||| ||| | |||||||||||||| ||||| || ||
Sbjct: 114486805 tccaaagagctgagacagaagtacaatgtttgatccatgcccatccgaaaggatgatgaa 114486746
Query: 218 gtccaggtggtccgaggacattacaaaggtcagcaaattggcaaagtagtccaggtgtac 277
|| ||||| || | | |||| |||||||| ||||| | |||||||||| | ||| | |||
Sbjct: 114486745 gttcaggttgtacaaagacaatacaaagggcagcagactggcaaagtaattcagatttac 114486686
Query: 278 agaaagaaatatgtcatctacatcgagcgggtgcagcgggagaaggctaatggtacgact 337
| ||||||||||||||||||| || | |||||| |||||||||| ||||| | ||||
Sbjct: 114486685 gggaagaaatatgtcatctacactgaaagagtgcagtgggagaaggcaaatggcatgact 114486626
Query: 338 gtccacgtgggcattcacccgagcaaggtagttatcaccaggctaaaactggacaaaga 396
| ||| |||||||||||||| |||||||| |||||| | || |||| ||||||||||||
Sbjct: 114486625 gcccatgtgggcattcaccccagcaaggtggttatcgctagactaacactggacaaaga 114486567
Score = 137 bits (69), Expect = 9e-30
Identities = 129/149 (86%)
Strand = Plus / Plus
Query: 248 cagcaaattggcaaagtagtccaggtgtacagaaagaaatatgtcatctacatcgagcgg 307
|||||||||||||||||||||||||| ||||| ||||||||| ||| |||||| || |
Sbjct: 75640094 cagcaaattggcaaagtagtccaggtttacaggaagaaatatttcacctacattgaacaa 75640153
Query: 308 gtgcagcgggagaaggctaatggtacgactgtccacgtgggcattcacccgagcaaggta 367
|| || ||||||||||||||||||| || |||| |||||||||||||| ||||||||
Sbjct: 75640154 gtatagtgggagaaggctaatggtacaaccatccatgtgggcattcaccccagcaaggtg 75640213
Query: 368 gttatcaccaggctaaaactggacaaaga 396
||| |||| || |||||||||||||||||
Sbjct: 75640214 gttttcactagactaaaactggacaaaga 75640242
Score = 61.9 bits (31), Expect = 4e-07
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 326 aatggtacgactgtccacgtgggcattcacccgagcaaggtagttatcaccaggctaaaa 385
||||| || |||||||| ||||||||||| || |||||||| ||||| |||||||| |||
Sbjct: 3935358 aatggcacaactgtccatgtgggcattcagcccagcaaggtggttataaccaggctgaaa 3935299
Query: 386 ctggaca 392
||||||
Sbjct: 3935298 gtggaca 3935292
>Sscrofa_Chr02
|| Length = 162569375
Score = 129 bits (65), Expect = 2e-27
Identities = 146/173 (84%)
Strand = Plus / Minus
Query: 224 gtggtccgaggacattacaaaggtcagcaaattggcaaagtagtccaggtgtacagaaag 283
||||| ||| |||| ||| ||||||||||||| || | | ||||||||||| |||||
Sbjct: 136057273 gtggttcgaagacactaccaaggtcagcaaatcagcgaggcagtccaggtgtgcagaaga 136057214
Query: 284 aaatatgtcatctacatcgagcgggtgcagcgggagaaggctaatggtacgactgtccac 343
|||||||||| |||||| |||| ||||||| | |||||||||||||||| ||||||||
Sbjct: 136057213 aaatatgtcacctacattgagcaggtgcagtgtaagaaggctaatggtacaactgtccat 136057154
Query: 344 gtgggcattcacccgagcaaggtagttatcaccaggctaaaactggacaaaga 396
|| ||||||||| ||||||||||||| ||| |||| ||||||| ||||||||
Sbjct: 136057153 atgtgcattcaccagagcaaggtagttctcagcaggttaaaactagacaaaga 136057101
>gb|GL894759.2| Sus scrofa unplaced genomic scaffold ChrUScaf2643
Length = 28017
Score = 111 bits (56), Expect = 5e-22
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 243 aaggtcagcaaattggcaaagtagtccaggtgtacagaaagaaatatgtcatctacatcg 302
|||| ||||| ||||||||||| |||||||| |||| |||| ||||||| ||||||| |
Sbjct: 1014 aagggcagcacattggcaaagtcgtccaggttcacaggaagacatatgtcctctacatgg 955
Query: 303 agcgggtgcagcgggagaaggctaatggtacgactgtccacgtgggcattcacccgagca 362
| | | |||||||||||||||||| || ||||| ||||| |||||||||||||| |||
Sbjct: 954 aatgagggcagcgggagaaggctaaaggcacgaccgtccatgtgggcattcaccccagcg 895
Query: 363 aggtagttatcaccaggctaaaactgga 390
|||| |||||||| || || ||||||||
Sbjct: 894 aggtggttatcactagactgaaactgga 867
>Sscrofa_Chr03
|| Length = 144787322
Score = 97.6 bits (49), Expect = 8e-18
Identities = 122/145 (84%), Gaps = 1/145 (0%)
Strand = Plus / Minus
Query: 241 caaaggtcagcaaattggcaaagtagtccaggtgtacagaaagaaatatgtcatctacat 300
|||||| ||||||||| |||||||||||||| | | || |||||||||||||| ||||
Sbjct: 95949035 caaagggcagcaaattagcaaagtagtccagatttccaagaagaaatatgtcatttacac 95948976
Query: 301 cgagcgggt-gcagcgggagaaggctaatggtacgactgtccacgtgggcattcacccga 359
|| | || ||||| ||||||| ||||||| || |||||||| |||||||||||||| |
Sbjct: 95948975 tgaaccagttgcagcaggagaagtctaatggcacaactgtccatgtgggcattcacccca 95948916
Query: 360 gcaaggtagttatcaccaggctaaa 384
||||||| || ||||| ||||||||
Sbjct: 95948915 gcaaggtggtcatcactaggctaaa 95948891
>Sscrofa_Chr14
|| Length = 153851969
Score = 91.7 bits (46), Expect = 5e-16
Identities = 139/170 (81%)
Strand = Plus / Minus
Query: 158 tccaaggagctgcggcagaagtacaacgttcgctccatgcccatccgcaaggacgacgag 217
||||||||||||| || ||||| ||| || |||||||||| ||| | ||||| | ||
Sbjct: 9167308 tccaaggagctgcagcggaagtgcaatgtctgctccatgcctatctgtgaggacagcaag 9167249
Query: 218 gtccaggtggtccgaggacattacaaaggtcagcaaattggcaaagtagtccaggtgtac 277
|||||||| ||| ||||| ||||||| | |||||| ||||| || || |||||||||
Sbjct: 9167248 gtccaggttgtcaagggacactacaaagattagcaaacaggcaatgtggtgcaggtgtac 9167189
Query: 278 agaaagaaatatgtcatctacatcgagcgggtgcagcgggagaaggctaa 327
|||||||||||| ||| ||||||| || |||||||| | |||||||||||
Sbjct: 9167188 agaaagaaatatatcacctacatcaagtgggtgcagtgtgagaaggctaa 9167139
Score = 91.7 bits (46), Expect = 5e-16
Identities = 139/170 (81%)
Strand = Plus / Minus
Query: 158 tccaaggagctgcggcagaagtacaacgttcgctccatgcccatccgcaaggacgacgag 217
||||||||||||| || ||||| ||| || |||||||||| ||| | ||||| | ||
Sbjct: 9335871 tccaaggagctgcagcggaagtgcaatgtctgctccatgcctatctgtgaggacagcaag 9335812
Query: 218 gtccaggtggtccgaggacattacaaaggtcagcaaattggcaaagtagtccaggtgtac 277
|||||||| ||| ||||| ||||||| | |||||| ||||| || || |||||||||
Sbjct: 9335811 gtccaggttgtcaagggacactacaaagattagcaaacaggcaatgtggtgcaggtgtac 9335752
Query: 278 agaaagaaatatgtcatctacatcgagcgggtgcagcgggagaaggctaa 327
|||||||||||| ||| ||||||| || |||||||| | |||||||||||
Sbjct: 9335751 agaaagaaatatatcacctacatcaagtgggtgcagtgtgagaaggctaa 9335702
>Sscrofa_Chr13
|| Length = 218635234
Score = 85.7 bits (43), Expect = 3e-14
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 256 tggcaaagtagtccaggtgtacagaaagaaatatgtcatctacatcgagcgggtgcagcg 315
|||||||| ||||||||| ||||| ||||||||||||||||||| || || |||||| |
Sbjct: 213299630 tggcaaaggagtccaggtttacaggaagaaatatgtcatctacactgaacgagtgcagtg 213299689
Query: 316 ggagaaggctaatggtacgactgtccacgtgggcattcacccgagcaaggtagttatca 374
||| |||||||||| | ||| ||| |||||||||||||| ||| |||| |||||||
Sbjct: 213299690 ggatgaggctaatggcatgacgacccaggtgggcattcaccccagcgaggtggttatca 213299748
>Sscrofa_ChrX
|| Length = 144288218
Score = 75.8 bits (38), Expect = 3e-11
Identities = 128/158 (81%)
Strand = Plus / Minus
Query: 56 atgaagttcaaccccttcgtgacttcggaccgcagcaaaaaccgcaaacgtcatttcaat 115
|||||||||| |||| |||||| | ||||| ||||| ||||| ||| | || ||||||
Sbjct: 7432288 atgaagttcacttcctttgtgactgctgaccgaagcaagaaccgtaaaaggcacttcaat 7432229
Query: 116 gccccctcccacgtgcgcaggaagatcatgtcgtctccactctccaaggagctgcggcag 175
|| | |||||| | ||||||||||| |||| | || || ||||| |||||| | |||
Sbjct: 7432228 gcatcttcccacattcgcaggaagatggtgtctgcccctctttccaaagagctgagccag 7432169
Query: 176 aagtacaacgttcgctccatgcccatccgcaaggacga 213
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Sbjct: 7432168 aagtacaacgttcgatccatgcccatccaaaaggacga 7432131
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,092,812
Number of extensions: 1514
Number of successful extensions: 1514
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1508
Number of HSP's successfully gapped: 22
Length of query: 717
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 696
Effective length of database: 2,808,413,156
Effective search space: 1954655556576
Effective search space used: 1954655556576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)