Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008965
(1017 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030243.1| hydroxyacid oxidase 2 [Bos taurus]. 464 e-138
Alignment gi|NP_001073249.1| hydroxyacid oxidase 1 [Bos taurus]. 87 2e-17
>ref|NP_001030243.1| hydroxyacid oxidase 2 [Bos taurus].
Length = 353
Score = 464 bits (1194), Expect(2) = e-138
Identities = 227/275 (82%), Positives = 244/275 (88%)
Frame = +3
Query: 105 MPLVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDT 284
MPLVCLTDF++HARE LSKSTWDFIEGGAD C TRD+N+AAFKKIRLRPRYLKDVSKVD
Sbjct: 1 MPLVCLTDFREHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDM 60
Query: 285 RITIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTA 464
R TIQG EISAPICIAP GFH LAWPDGEMSTARAA+AA ICY+TS YASCSLEDIV A
Sbjct: 61 RTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAA 120
Query: 465 PGGLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQVXXXXXXX 644
P GLRWFQLYVHPNRQ+NKQ+IQKVESLGFKALVITVDVPK+GNRR+++ NQV
Sbjct: 121 PRGLRWFQLYVHPNRQINKQMIQKVESLGFKALVITVDVPKVGNRRNDITNQVDLMKKLL 180
Query: 645 XXXXXXSAKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDAELAVKHNV 824
GN MPYFQMSPIDPSICW+DLSWFQS+TRLPIILKGILTKEDAELAVKHNV
Sbjct: 181 LKDLGSPEMGNVMPYFQMSPIDPSICWEDLSWFQSMTRLPIILKGILTKEDAELAVKHNV 240
Query: 825 HGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKLK 929
HGIIVSNHGGRQLDEVPASIDAL+EVVAAVKGK++
Sbjct: 241 HGIIVSNHGGRQLDEVPASIDALTEVVAAVKGKVE 275
Score = 48.5 bits (114), Expect(2) = e-138
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +2
Query: 920 EIEVYLDGGIRTGNDVLKALASGANACLWGGR 1015
++EVYLDGGIRTGNDVLKALA GA C++ GR
Sbjct: 273 KVEVYLDGGIRTGNDVLKALALGAK-CVFVGR 303
>ref|NP_001073249.1| hydroxyacid oxidase 1 [Bos taurus].
Length = 126
Score = 87.0 bits (214), Expect = 2e-17
Identities = 43/123 (34%), Positives = 70/123 (56%)
Frame = +3
Query: 111 LVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDTRI 290
LVC++D++ HA+ L KS +D+ + GA+ T DN+AAF + +L PR L++++++D
Sbjct: 5 LVCISDYEQHAKSVLQKSIYDYYKSGANDQETLADNIAAFSRWKLYPRMLRNIAEIDLST 64
Query: 291 TIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTAPG 470
++ G+++S PIC+ C+A DGE++T R L D V T G
Sbjct: 65 SVLGQKVSMPICVGATAMQCMAHVDGELATVRER---------------GLRDEVRTKKG 109
Query: 471 GLR 479
GLR
Sbjct: 110 GLR 112
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,685,801
Number of extensions: 1465954
Number of successful extensions: 4144
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4135
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008965
(1017 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533023.2| PREDICTED: similar to Hydroxyacid oxidase 2 (HA... 436 e-130
Alignment gi|XP_859819.1| PREDICTED: similar to hydroxyacid oxidase 1 iso... 238 4e-69
Alignment gi|XP_542897.2| PREDICTED: similar to Hydroxyacid oxidase 1 (HA... 234 1e-67
Alignment gi|XP_859787.1| PREDICTED: similar to Hydroxyacid oxidase 1 (HA... 219 1e-63
>ref|XP_533023.2| PREDICTED: similar to Hydroxyacid oxidase 2 (HAOX2)
((S)-2-hydroxy-acid oxidase, peroxisomal) (Long chain
alpha-hydroxy acid oxidase) (Long-chain L-2-hydroxy acid
oxidase) [Canis familiaris].
Length = 353
Score = 436 bits (1121), Expect(2) = e-130
Identities = 209/275 (76%), Positives = 238/275 (86%)
Frame = +3
Query: 105 MPLVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDT 284
MPLVCLTDFQ +A++ LSKSTWD+IEGGAD C TRDDN+ AFK+IRLRPRYLKDV +VDT
Sbjct: 1 MPLVCLTDFQAYAQKHLSKSTWDYIEGGADECFTRDDNITAFKRIRLRPRYLKDVQEVDT 60
Query: 285 RITIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTA 464
R T+QGEEI+APICI+P GFHCL WPDGEMSTARAA+AAGICY+TS YASC+LEDIV TA
Sbjct: 61 RTTVQGEEITAPICISPTGFHCLVWPDGEMSTARAAQAAGICYITSTYASCALEDIVATA 120
Query: 465 PGGLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQVXXXXXXX 644
P GLRWFQLY+ ++QLNKQL+QKVESLGFKALVITVDVPK+GNRR ++ NQ+
Sbjct: 121 PRGLRWFQLYMQSDKQLNKQLVQKVESLGFKALVITVDVPKLGNRRQDIQNQLDLKMNLL 180
Query: 645 XXXXXXSAKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDAELAVKHNV 824
+ + N MPYFQM PID S CW+DLSW QS+TRLPIILKGILTKEDAELAVKHNV
Sbjct: 181 LKDLRSTKERNPMPYFQMFPIDASFCWNDLSWLQSITRLPIILKGILTKEDAELAVKHNV 240
Query: 825 HGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKLK 929
HGIIVSNHGGRQLD+V ASIDAL+EVVAAVKGK++
Sbjct: 241 HGIIVSNHGGRQLDDVLASIDALAEVVAAVKGKME 275
Score = 47.4 bits (111), Expect(2) = e-130
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +2
Query: 920 EIEVYLDGGIRTGNDVLKALASGANACLWGGR 1015
++EVYLDGGIRTGNDVLKALA GA C++ GR
Sbjct: 273 KMEVYLDGGIRTGNDVLKALALGAK-CVFLGR 303
>ref|XP_859819.1| PREDICTED: similar to hydroxyacid oxidase 1 isoform 3 [Canis
familiaris].
Length = 363
Score = 238 bits (608), Expect(2) = 4e-69
Identities = 115/276 (41%), Positives = 181/276 (65%), Gaps = 3/276 (1%)
Frame = +3
Query: 111 LVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDTRI 290
LVC++D++ +A+ L KS +D+ GA+ T DN+AAF + +L PR L++V+++D
Sbjct: 5 LVCISDYEQNAKSVLQKSIYDYYRSGANDQETLADNIAAFSRWKLYPRMLRNVAEIDLST 64
Query: 291 TIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTAPG 470
++ G+ +S PIC+ C+A DGE++T RA R+ G + S +++ S+E++ +P
Sbjct: 65 SVLGQRVSMPICVGATAMQCMAHVDGELATVRACRSLGTGMMLSSWSTSSIEEVAEASPD 124
Query: 471 GLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMAN--QVXXXXXXX 644
LRW QLY++ +R++ KQL+Q+ E G+KA+ +TVD P +GNR ++ N ++
Sbjct: 125 ALRWLQLYIYKDREVTKQLVQRAERKGYKAIFLTVDTPYLGNRFDDVRNRFKLPPQLRLK 184
Query: 645 XXXXXXSAKGNS-MPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDAELAVKHN 821
S+ NS + + IDPSI W+D+ W + LT LPI+ KGIL +DA+ AVKH
Sbjct: 185 IYALLISSNNNSGLATYVAKSIDPSISWEDIKWLRGLTSLPIVAKGILRGDDAKEAVKHG 244
Query: 822 VHGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKLK 929
++GI+VSNHG RQLD VPA+IDAL E+V AV+GK++
Sbjct: 245 LNGILVSNHGARQLDGVPATIDALPEIVEAVEGKVE 280
Score = 42.4 bits (98), Expect(2) = 4e-69
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 914 EREIEVYLDGGIRTGNDVLKALASGANACLWG 1009
E ++E++LDGG+R G DVLKALA GA A G
Sbjct: 276 EGKVEIFLDGGVRKGTDVLKALALGAKAVFVG 307
>ref|XP_542897.2| PREDICTED: similar to Hydroxyacid oxidase 1 (HAOX1) (Glycolate
oxidase) (GOX) isoform 1 [Canis familiaris].
Length = 370
Score = 234 bits (596), Expect(2) = 1e-67
Identities = 112/283 (39%), Positives = 178/283 (62%), Gaps = 10/283 (3%)
Frame = +3
Query: 111 LVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDTRI 290
LVC++D++ +A+ L KS +D+ GA+ T DN+AAF + +L PR L++V+++D
Sbjct: 5 LVCISDYEQNAKSVLQKSIYDYYRSGANDQETLADNIAAFSRWKLYPRMLRNVAEIDLST 64
Query: 291 TIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTAPG 470
++ G+ +S PIC+ C+A DGE++T RA R+ G + S +++ S+E++ +P
Sbjct: 65 SVLGQRVSMPICVGATAMQCMAHVDGELATVRACRSLGTGMMLSSWSTSSIEEVAEASPD 124
Query: 471 GLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQVXXXXXXXXX 650
LRW QLY++ +R++ KQL+Q+ E G+KA+ +TVD P +GNR ++ N+
Sbjct: 125 ALRWLQLYIYKDREVTKQLVQRAERKGYKAIFLTVDTPYLGNRFDDVRNRFKLPPQLRMK 184
Query: 651 XXXXS----------AKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDA 800
+ + + + IDPSI W+D+ W + LT LPI+ KGIL +DA
Sbjct: 185 NFETNDLAFSPKENFGDNSGLATYVAKSIDPSISWEDIKWLRGLTSLPIVAKGILRGDDA 244
Query: 801 ELAVKHNVHGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKLK 929
+ AVKH ++GI+VSNHG RQLD VPA+IDAL E+V AV+GK++
Sbjct: 245 KEAVKHGLNGILVSNHGARQLDGVPATIDALPEIVEAVEGKVE 287
Score = 42.4 bits (98), Expect(2) = 1e-67
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 914 EREIEVYLDGGIRTGNDVLKALASGANACLWG 1009
E ++E++LDGG+R G DVLKALA GA A G
Sbjct: 283 EGKVEIFLDGGVRKGTDVLKALALGAKAVFVG 314
>ref|XP_859787.1| PREDICTED: similar to Hydroxyacid oxidase 1 (HAOX1) (Glycolate
oxidase) (GOX) isoform 2 [Canis familiaris].
Length = 375
Score = 219 bits (557), Expect(2) = 1e-63
Identities = 105/279 (37%), Positives = 170/279 (60%), Gaps = 10/279 (3%)
Frame = +3
Query: 111 LVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDTRI 290
LVC++D++ +A+ L KS +D+ GA+ T DN+AAF + +L PR L++V+++D
Sbjct: 5 LVCISDYEQNAKSVLQKSIYDYYRSGANDQETLADNIAAFSRWKLYPRMLRNVAEIDLST 64
Query: 291 TIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTAPG 470
++ G+ +S PIC+ C+A DGE++T RA R+ G + S +++ S+E++ +P
Sbjct: 65 SVLGQRVSMPICVGATAMQCMAHVDGELATVRACRSLGTGMMLSSWSTSSIEEVAEASPD 124
Query: 471 GLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQVXXXXXXXXX 650
LRW QLY++ +R++ KQL+Q+ E G+KA+ +TVD P +GNR ++ N+
Sbjct: 125 ALRWLQLYIYKDREVTKQLVQRAERKGYKAIFLTVDTPYLGNRFDDVRNRFKLPPQLRMK 184
Query: 651 XXXXS----------AKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDA 800
+ + + + IDPSI W+D+ W + LT LPI+ KGIL +DA
Sbjct: 185 NFETNDLAFSPKENFGDNSGLATYVAKSIDPSISWEDIKWLRGLTSLPIVAKGILRGDDA 244
Query: 801 ELAVKHNVHGIIVSNHGGRQLDEVPASIDALSEVVAAVK 917
+ AVKH ++GI+VSNHG RQLD VPA++ E ++ VK
Sbjct: 245 KEAVKHGLNGILVSNHGARQLDGVPATVKLQIEFMSIVK 283
Score = 43.9 bits (102), Expect(2) = 1e-63
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +2
Query: 914 EREIEVYLDGGIRTGNDVLKALASGANACLWG 1009
+R++E++LDGG+R G DVLKALA GA A G
Sbjct: 288 DRKVEIFLDGGVRKGTDVLKALALGAKAVFVG 319
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,602,899
Number of extensions: 1501524
Number of successful extensions: 4246
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4240
Number of HSP's successfully gapped: 8
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008965
(1017 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125868.1| PREDICTED: hydroxyacid oxidase 2-like [Sus s... 525 e-157
Alignment gi|NP_001230360.1| hydroxyacid oxidase 1, liver [Sus scrofa]. 237 5e-69
>ref|XP_003125868.1| PREDICTED: hydroxyacid oxidase 2-like [Sus scrofa].
Length = 353
Score = 525 bits (1353), Expect(2) = e-157
Identities = 260/275 (94%), Positives = 262/275 (95%)
Frame = +3
Query: 105 MPLVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDT 284
MPLVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDT
Sbjct: 1 MPLVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDT 60
Query: 285 RITIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTA 464
RITIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTA
Sbjct: 61 RITIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTA 120
Query: 465 PGGLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQVXXXXXXX 644
PGGLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQV
Sbjct: 121 PGGLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQVDLQKTLL 180
Query: 645 XXXXXXSAKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDAELAVKHNV 824
SAKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDAELAVKHNV
Sbjct: 181 LKDLGLSAKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDAELAVKHNV 240
Query: 825 HGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKLK 929
HGIIVSNHGGRQLDEVPASIDALSEVVAAVKGK++
Sbjct: 241 HGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKIE 275
Score = 48.9 bits (115), Expect(2) = e-157
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +2
Query: 920 EIEVYLDGGIRTGNDVLKALASGANACLWGGR 1015
+IEVYLDGGIRTGNDVLKALA GA C++ GR
Sbjct: 273 KIEVYLDGGIRTGNDVLKALALGAK-CVFVGR 303
>ref|NP_001230360.1| hydroxyacid oxidase 1, liver [Sus scrofa].
Length = 370
Score = 237 bits (604), Expect(2) = 5e-69
Identities = 114/283 (40%), Positives = 176/283 (62%), Gaps = 10/283 (3%)
Frame = +3
Query: 111 LVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDTRI 290
LVC++D++ HA+ L KS +D+ + GA+ T DN+AAF + +L PR L++V++VD
Sbjct: 5 LVCISDYEQHAKSILQKSIYDYYKSGANDQETLADNIAAFSRWKLYPRMLRNVAEVDLST 64
Query: 291 TIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTAPG 470
++ G+ +S PIC+ C+A DGE++T RA R G + S +A+ S+E++ P
Sbjct: 65 SVLGQRVSMPICVGATAMQCMAHEDGELATVRACRTLGTGMMLSSWATSSIEEVAEAGPE 124
Query: 471 GLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQVXXXXXXXXX 650
LRW QLY++ +R++ KQL+Q+ E +G+KA+ +TVD P +GNR ++ N+
Sbjct: 125 ALRWLQLYIYKDREVTKQLVQRAERMGYKAIFVTVDTPYLGNRFDDVRNRFKLPSQLRMK 184
Query: 651 XXXXS----------AKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDA 800
+ + + + IDPSI W+D+ W + LT LPI+ KGIL +DA
Sbjct: 185 NFETNDLAFSPKENFGDNSGLAAYVAKAIDPSISWEDIKWLRRLTTLPIVAKGILRGDDA 244
Query: 801 ELAVKHNVHGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKLK 929
+ VKH + GI+VSNHG RQLD VPA+IDAL E+V AV+GK++
Sbjct: 245 KEVVKHGLDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVE 287
Score = 42.7 bits (99), Expect(2) = 5e-69
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 914 EREIEVYLDGGIRTGNDVLKALASGANACLWG 1009
E ++EV+LDGG+R G DVLKALA GA A G
Sbjct: 283 EGKVEVFLDGGVRKGTDVLKALALGAKAVFVG 314
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,114,939
Number of extensions: 943422
Number of successful extensions: 2746
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2741
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008965
(1017 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062418.3| hydroxyacid oxidase 2 [Mus musculus]. 345 e-103
Alignment gi|NP_034533.1| hydroxyacid oxidase 1 [Mus musculus]. 234 6e-68
>ref|NP_062418.3| hydroxyacid oxidase 2 [Mus musculus].
Length = 353
Score = 345 bits (886), Expect(2) = e-103
Identities = 171/275 (62%), Positives = 211/275 (76%)
Frame = +3
Query: 105 MPLVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDT 284
M L+CL DF+ A+++LSK++WDFIEG AD +T +DN+AAF++IRLRPRYL+DVSK+DT
Sbjct: 1 MSLLCLADFKAQAQKQLSKTSWDFIEGEADDGITYNDNLAAFRRIRLRPRYLRDVSKIDT 60
Query: 285 RITIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTA 464
R TIQG+EI+APICI+P FH +AW DGE STA+AA+ A ICYV S YAS ++EDIV A
Sbjct: 61 RTTIQGQEINAPICISPTAFHSIAWADGEKSTAKAAQKANICYVISSYASYTVEDIVAAA 120
Query: 465 PGGLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQVXXXXXXX 644
PGGL WFQLYV P+ +NKQ++Q++E+LGFKALV+TVD P +GNRR N + +
Sbjct: 121 PGGLHWFQLYVQPDWDINKQMVQRIEALGFKALVVTVDAPVLGNRRGNKRSLLDLEANIK 180
Query: 645 XXXXXXSAKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDAELAVKHNV 824
+ S +S S CW+DL QS+TRLPIILKGILTKEDAELAVKHN+
Sbjct: 181 LKDLRSPGESKSGLPTPLSMPSSSSCWNDLPLLQSMTRLPIILKGILTKEDAELAVKHNI 240
Query: 825 HGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKLK 929
GIIVSNHGGRQLDEVPASIDAL EVVAAV GK++
Sbjct: 241 RGIIVSNHGGRQLDEVPASIDALREVVAAVNGKIE 275
Score = 47.8 bits (112), Expect(2) = e-103
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +2
Query: 920 EIEVYLDGGIRTGNDVLKALASGANACLWGGR 1015
+IEVY+DGG+RTGNDVLKALA GA C++ GR
Sbjct: 273 KIEVYMDGGVRTGNDVLKALALGAR-CIFLGR 303
>ref|NP_034533.1| hydroxyacid oxidase 1 [Mus musculus].
Length = 370
Score = 234 bits (596), Expect(2) = 6e-68
Identities = 113/283 (39%), Positives = 176/283 (62%), Gaps = 10/283 (3%)
Frame = +3
Query: 111 LVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDTRI 290
LVC++D++ H R L KS +D+ GA+ T DN+ AF + +L PR L++V+ +D
Sbjct: 5 LVCISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLST 64
Query: 291 TIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTAPG 470
++ G+ +S PIC+ C+A DGE++T RA + G + S +A+ S+E++ P
Sbjct: 65 SVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPE 124
Query: 471 GLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQV-----XXXX 635
LRW QLY++ +R++++Q++++ E G+KA+ +TVD P +GNR ++ N+
Sbjct: 125 ALRWMQLYIYKDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVRNRFKLPPQLRMK 184
Query: 636 XXXXXXXXXSAKGN-----SMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDA 800
S KGN + + IDPS+ WDD++W + LT LPI++KGIL +DA
Sbjct: 185 NFETNDLAFSPKGNFGDNSGLAEYVAQAIDPSLSWDDITWLRRLTSLPIVVKGILRGDDA 244
Query: 801 ELAVKHNVHGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKLK 929
+ AVKH V GI+VSNHG RQLD VPA+ID L E+V AV+GK++
Sbjct: 245 KEAVKHGVDGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVE 287
Score = 42.7 bits (99), Expect(2) = 6e-68
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 914 EREIEVYLDGGIRTGNDVLKALASGANACLWG 1009
E ++EV+LDGG+R G DVLKALA GA A G
Sbjct: 283 EGKVEVFLDGGVRKGTDVLKALALGAKAVFVG 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,448,267
Number of extensions: 1239963
Number of successful extensions: 3487
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3472
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008965
(1017 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001005783.1| hydroxyacid oxidase 2 [Homo sapiens]. 432 e-129
Alignment gi|NP_057611.1| hydroxyacid oxidase 2 [Homo sapiens]. 432 e-129
Alignment gi|NP_060015.1| hydroxyacid oxidase 1 [Homo sapiens]. 226 2e-65
>ref|NP_001005783.1| hydroxyacid oxidase 2 [Homo sapiens].
Length = 351
Score = 432 bits (1111), Expect(2) = e-129
Identities = 215/275 (78%), Positives = 239/275 (86%)
Frame = +3
Query: 105 MPLVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDT 284
M LVCLTDFQ HARE+LSKST DFIEGGAD +TRDDN+AAFK+IRLRPRYL+DVS+VDT
Sbjct: 1 MSLVCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDT 60
Query: 285 RITIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTA 464
R TIQGEEISAPICIAP GFHCL WPDGEMSTARAA+AAGICY+TS +ASCSLEDIV A
Sbjct: 61 RTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAA 120
Query: 465 PGGLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQVXXXXXXX 644
P GLRWFQLYVHP+ QLNKQLIQ+VESLGFKALVIT+D P GNRRH++ NQ+
Sbjct: 121 PEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQL--RRNLT 178
Query: 645 XXXXXXSAKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDAELAVKHNV 824
KGN++PYFQM+PI S+CW+DLSWFQS+TRLPIILKGILTKEDAELAVKHNV
Sbjct: 179 LTDLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNV 238
Query: 825 HGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKLK 929
GIIVSNHGGRQLDEV ASIDAL+EVVAAVKGK++
Sbjct: 239 QGIIVSNHGGRQLDEVLASIDALTEVVAAVKGKIE 273
Score = 48.5 bits (114), Expect(2) = e-129
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +2
Query: 920 EIEVYLDGGIRTGNDVLKALASGANACLWGGR 1015
+IEVYLDGG+RTGNDVLKALA GA C++ GR
Sbjct: 271 KIEVYLDGGVRTGNDVLKALALGAK-CIFLGR 301
>ref|NP_057611.1| hydroxyacid oxidase 2 [Homo sapiens].
Length = 351
Score = 432 bits (1111), Expect(2) = e-129
Identities = 215/275 (78%), Positives = 239/275 (86%)
Frame = +3
Query: 105 MPLVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDT 284
M LVCLTDFQ HARE+LSKST DFIEGGAD +TRDDN+AAFK+IRLRPRYL+DVS+VDT
Sbjct: 1 MSLVCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDT 60
Query: 285 RITIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTA 464
R TIQGEEISAPICIAP GFHCL WPDGEMSTARAA+AAGICY+TS +ASCSLEDIV A
Sbjct: 61 RTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAA 120
Query: 465 PGGLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQVXXXXXXX 644
P GLRWFQLYVHP+ QLNKQLIQ+VESLGFKALVIT+D P GNRRH++ NQ+
Sbjct: 121 PEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQL--RRNLT 178
Query: 645 XXXXXXSAKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDAELAVKHNV 824
KGN++PYFQM+PI S+CW+DLSWFQS+TRLPIILKGILTKEDAELAVKHNV
Sbjct: 179 LTDLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNV 238
Query: 825 HGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKLK 929
GIIVSNHGGRQLDEV ASIDAL+EVVAAVKGK++
Sbjct: 239 QGIIVSNHGGRQLDEVLASIDALTEVVAAVKGKIE 273
Score = 48.5 bits (114), Expect(2) = e-129
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +2
Query: 920 EIEVYLDGGIRTGNDVLKALASGANACLWGGR 1015
+IEVYLDGG+RTGNDVLKALA GA C++ GR
Sbjct: 271 KIEVYLDGGVRTGNDVLKALALGAK-CIFLGR 301
>ref|NP_060015.1| hydroxyacid oxidase 1 [Homo sapiens].
Length = 370
Score = 226 bits (575), Expect(2) = 2e-65
Identities = 109/283 (38%), Positives = 173/283 (61%), Gaps = 10/283 (3%)
Frame = +3
Query: 111 LVCLTDFQDHARERLSKSTWDFIEGGADACLTRDDNVAAFKKIRLRPRYLKDVSKVDTRI 290
L+C+ D++ HA+ L KS +D+ GA+ T DN+AAF + +L PR L++V++ D
Sbjct: 5 LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLST 64
Query: 291 TIQGEEISAPICIAPMGFHCLAWPDGEMSTARAARAAGICYVTSMYASCSLEDIVGTAPG 470
++ G+ +S PIC+ +A DGE++T RA ++ G + S +A+ S+E++ P
Sbjct: 65 SVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPE 124
Query: 471 GLRWFQLYVHPNRQLNKQLIQKVESLGFKALVITVDVPKIGNRRHNMANQVXXXXXXXXX 650
LRW QLY++ +R++ K+L+++ E +G+KA+ +TVD P +GNR ++ N+
Sbjct: 125 ALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMK 184
Query: 651 XXXXS----------AKGNSMPYFQMSPIDPSICWDDLSWFQSLTRLPIILKGILTKEDA 800
S + + + IDPSI W+D+ W + LT LPI+ KGIL +DA
Sbjct: 185 NFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDA 244
Query: 801 ELAVKHNVHGIIVSNHGGRQLDEVPASIDALSEVVAAVKGKLK 929
AVKH ++GI+VSNHG RQLD VPA+ID L E+V AV+GK++
Sbjct: 245 REAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVE 287
Score = 42.7 bits (99), Expect(2) = 2e-65
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 914 EREIEVYLDGGIRTGNDVLKALASGANACLWG 1009
E ++EV+LDGG+R G DVLKALA GA A G
Sbjct: 283 EGKVEVFLDGGVRKGTDVLKALALGAKAVFVG 314
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,765,825
Number of extensions: 1483154
Number of successful extensions: 4319
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4308
Number of HSP's successfully gapped: 6
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008965
(1017 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 569 e-159
>Sscrofa_Chr04
|| Length = 143465943
Score = 569 bits (287), Expect = e-159
Identities = 287/287 (100%)
Strand = Plus / Minus
Query: 386 agctgcccgagcagctggcatctgctatgtcaccagcatgtatgccagctgcagccttga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111589287 agctgcccgagcagctggcatctgctatgtcaccagcatgtatgccagctgcagccttga 111589228
Query: 446 agacatcgttggtactgcacctgggggcctgcgatggttccaactgtatgtgcatccaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111589227 agacatcgttggtactgcacctgggggcctgcgatggttccaactgtatgtgcatccaaa 111589168
Query: 506 ccggcagctaaacaaacagctgatccaaaaggtagaatccctgggcttcaaggctctggt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111589167 ccggcagctaaacaaacagctgatccaaaaggtagaatccctgggcttcaaggctctggt 111589108
Query: 566 gatcactgtggatgtgcccaaaattggcaataggcgacataacatggcaaaccaagtgga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111589107 gatcactgtggatgtgcccaaaattggcaataggcgacataacatggcaaaccaagtgga 111589048
Query: 626 cttgcaaaagaccttactcctgaaagaccttggattgtctgcaaagg 672
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111589047 cttgcaaaagaccttactcctgaaagaccttggattgtctgcaaagg 111589001
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 670 agggaaattcaatgccctatttccagatgtcccccattgacccatccatttgctgggatg 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111588147 agggaaattcaatgccctatttccagatgtcccccattgacccatccatttgctgggatg 111588088
Query: 730 atctctcctggtttcagagcttgactcgtttgcccatcatccttaaggggatcttgacca 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111588087 atctctcctggtttcagagcttgactcgtttgcccatcatccttaaggggatcttgacca 111588028
Query: 790 aagaggatgcagagttagctgtgaagcacaatgtccatggcatcattgtttccaaccatg 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111588027 aagaggatgcagagttagctgtgaagcacaatgtccatggcatcattgtttccaaccatg 111587968
Query: 850 gtgggaggcagcttgatgaggttcctgcttct 881
||||||||||||||||||||||||||||||||
Sbjct: 111587967 gtgggaggcagcttgatgaggttcctgcttct 111587936
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 238 tccgcctccgtccccggtacctgaaagacgtgtcaaaggtggacacgagaatcaccatcc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111591173 tccgcctccgtccccggtacctgaaagacgtgtcaaaggtggacacgagaatcaccatcc 111591114
Query: 298 aaggcgaggagatcagtgcccccatttgcatcgcacccatgggtttccactgcctcgcct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111591113 aaggcgaggagatcagtgcccccatttgcatcgcacccatgggtttccactgcctcgcct 111591054
Query: 358 ggcctgacggagaaatgagcacagccagag 387
||||||||||||||||||||||||||||||
Sbjct: 111591053 ggcctgacggagaaatgagcacagccagag 111591024
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 95 aggtccagaaatgcccttggtgtgtttgacagactttcaggaccatgcacgggagcggct 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111593270 aggtccagaaatgcccttggtgtgtttgacagactttcaggaccatgcacgggagcggct 111593211
Query: 155 gtctaaatcaacatgggattttatcgaaggaggagcagatgcttgcctcacgcgggatga 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111593210 gtctaaatcaacatgggattttatcgaaggaggagcagatgcttgcctcacgcgggatga 111593151
Query: 215 caacgtcgcagcattt 230
||||||||||||||||
Sbjct: 111593150 caacgtcgcagcattt 111593135
Score = 218 bits (110), Expect = 5e-54
Identities = 133/138 (96%), Gaps = 2/138 (1%)
Strand = Plus / Minus
Query: 882 atcgatgccttgtccgaagtggtggctgctgtgaaagggaaa-ttgaagtgtacctggac 940
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 111585748 atcgatgccttgtccgaagtggtggctgctgtgaaagggaaaattgaagtgtacctggac 111585689
Query: 941 ggagggatccgaacaggcaatgacgtgctaaaggccctggcctcgggggctaa-tgcgtg 999
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 111585688 ggagggatccgaacaggcaatgacgtgctaaaggccctggccctcggggctaagtgcgtg 111585629
Query: 1000 tttgtggggaggccgatc 1017
||||||||||||||||||
Sbjct: 111585628 tttgtggggaggccgatc 111585611
Score = 155 bits (78), Expect = 6e-35
Identities = 85/86 (98%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 14 ccattgcaacca-ccttaagccagggttggtgtggctgcctctggacagcgcttctccca 72
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111603422 ccattgcaaccaaccttaagccagggttggtgtggctgcctctggacagcgcttctccca 111603363
Query: 73 ggaactggacggggctgttctcaggt 98
||||||||||||||||||||||||||
Sbjct: 111603362 ggaactggacggggctgttctcaggt 111603337
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,272,439
Number of extensions: 96
Number of successful extensions: 96
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 6
Length of query: 1017
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 996
Effective length of database: 2,808,413,156
Effective search space: 2797179503376
Effective search space used: 2797179503376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)