Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008978
(917 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106791.1| immediate early response 3-interacting prote... 160 1e-39
Alignment gi|XP_002691505.1| PREDICTED: immediate early response 3 intera... 160 1e-39
Alignment gi|XP_002684312.1| PREDICTED: immediate early response 3 intera... 160 1e-39
>ref|NP_001106791.1| immediate early response 3-interacting protein 1 [Bos taurus].
Length = 82
Score = 160 bits (406), Expect = 1e-39
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +1
Query: 88 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 267
MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR
Sbjct: 1 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 60
Query: 268 TVMRVPLIIVNSIAIVLLLLFG 333
TVMRVPLIIVNSIAIVLLLLFG
Sbjct: 61 TVMRVPLIIVNSIAIVLLLLFG 82
>ref|XP_002691505.1| PREDICTED: immediate early response 3 interacting protein 1-like
[Bos taurus].
Length = 82
Score = 160 bits (406), Expect = 1e-39
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +1
Query: 88 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 267
MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR
Sbjct: 1 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 60
Query: 268 TVMRVPLIIVNSIAIVLLLLFG 333
TVMRVPLIIVNSIAIVLLLLFG
Sbjct: 61 TVMRVPLIIVNSIAIVLLLLFG 82
>ref|XP_002684312.1| PREDICTED: immediate early response 3 interacting protein 1 [Bos
taurus].
Length = 82
Score = 160 bits (406), Expect = 1e-39
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +1
Query: 88 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 267
MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR
Sbjct: 1 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 60
Query: 268 TVMRVPLIIVNSIAIVLLLLFG 333
TVMRVPLIIVNSIAIVLLLLFG
Sbjct: 61 TVMRVPLIIVNSIAIVLLLLFG 82
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,858,715
Number of extensions: 544658
Number of successful extensions: 2103
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2099
Number of HSP's successfully gapped: 3
Length of query: 305
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,306,398
Effective search space: 2904198794
Effective search space used: 2904198794
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008978
(917 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855203.1| PREDICTED: similar to immediate early response ... 158 6e-39
>ref|XP_855203.1| PREDICTED: similar to immediate early response 3 interacting
protein 1 [Canis familiaris].
Length = 82
Score = 158 bits (400), Expect = 6e-39
Identities = 80/82 (97%), Positives = 81/82 (98%)
Frame = +1
Query: 88 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 267
MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWG DQGIGGFGEEPGIKSQLMNLIRSVR
Sbjct: 1 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGADQGIGGFGEEPGIKSQLMNLIRSVR 60
Query: 268 TVMRVPLIIVNSIAIVLLLLFG 333
TVMRVPLII+NSIAIVLLLLFG
Sbjct: 61 TVMRVPLIIINSIAIVLLLLFG 82
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,036,206
Number of extensions: 563524
Number of successful extensions: 1945
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1943
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 203
Effective length of database: 15,474,232
Effective search space: 3141269096
Effective search space used: 3141269096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008978
(917 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353762.1| PREDICTED: immediate early response 3-intera... 160 7e-40
Alignment gi|XP_003361502.1| PREDICTED: hypothetical protein LOC100627305... 110 1e-24
>ref|XP_003353762.1| PREDICTED: immediate early response 3-interacting protein 1-like
[Sus scrofa].
Length = 82
Score = 160 bits (406), Expect = 7e-40
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +1
Query: 88 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 267
MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR
Sbjct: 1 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 60
Query: 268 TVMRVPLIIVNSIAIVLLLLFG 333
TVMRVPLIIVNSIAIVLLLLFG
Sbjct: 61 TVMRVPLIIVNSIAIVLLLLFG 82
>ref|XP_003361502.1| PREDICTED: hypothetical protein LOC100627305, partial [Sus scrofa].
Length = 52
Score = 110 bits (274), Expect = 1e-24
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = +3
Query: 267 NRDESAIDNSKLNCNCITFTIWVKIHRGNGDSSEEELPAEVTTSVFVGIYIS 422
NRDESAIDNSKLNCNCITFTIWVKIHRGNGDSSEEELPAEVTTSVFVGIYIS
Sbjct: 1 NRDESAIDNSKLNCNCITFTIWVKIHRGNGDSSEEELPAEVTTSVFVGIYIS 52
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,556,056
Number of extensions: 348284
Number of successful extensions: 1375
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1369
Number of HSP's successfully gapped: 2
Length of query: 305
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 206
Effective length of database: 8,879,129
Effective search space: 1829100574
Effective search space used: 1829100574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008978
(917 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079685.1| immediate early response 3-interacting protein ... 158 5e-39
>ref|NP_079685.1| immediate early response 3-interacting protein 1 [Mus musculus].
Length = 82
Score = 158 bits (400), Expect = 5e-39
Identities = 80/82 (97%), Positives = 81/82 (98%)
Frame = +1
Query: 88 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 267
MAFTLYSL+QAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR
Sbjct: 1 MAFTLYSLMQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 60
Query: 268 TVMRVPLIIVNSIAIVLLLLFG 333
TVMRVPLIIVNSI IVLLLLFG
Sbjct: 61 TVMRVPLIIVNSITIVLLLLFG 82
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,896,978
Number of extensions: 483031
Number of successful extensions: 1946
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1928
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 204
Effective length of database: 12,583,923
Effective search space: 2567120292
Effective search space used: 2567120292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008978
(917 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057181.1| immediate early response 3-interacting protein ... 160 1e-39
>ref|NP_057181.1| immediate early response 3-interacting protein 1 [Homo sapiens].
Length = 82
Score = 160 bits (406), Expect = 1e-39
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +1
Query: 88 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 267
MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR
Sbjct: 1 MAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVR 60
Query: 268 TVMRVPLIIVNSIAIVLLLLFG 333
TVMRVPLIIVNSIAIVLLLLFG
Sbjct: 61 TVMRVPLIIVNSIAIVLLLLFG 82
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,640,836
Number of extensions: 560765
Number of successful extensions: 2252
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2249
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,934,836
Effective search space: 3031771708
Effective search space used: 3031771708
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008978
(917 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1166 0.0
Sscrofa_Chr15 66 4e-08
>Sscrofa_Chr01
|| Length = 315321322
Score = 1166 bits (588), Expect = 0.0
Identities = 622/639 (97%)
Strand = Plus / Plus
Query: 279 agtgccattgataatagtaaactcaattgcaattgtattacttttactatttgggtgaag 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309590964 agtgccattgataatagtaaactcaattgcaattgtattacttttactatttgggtgaag 309591023
Query: 339 atccacagaggaaatggagactcatcagaggaagagctgccagcagaagttactacttca 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309591024 atccacagaggaaatggagactcatcagaggaagagctgccagcagaagttactacttca 309591083
Query: 399 gtctttgttggaatatacatatcttagctggctctccttggacttgacaaagtgtaaacc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309591084 gtctttgttggaatatacatatcttagctggctctccttggacttgacaaagtgtaaacc 309591143
Query: 459 tgagagtaaaaccagagtccctatttatctgattttttaaaatattgcacttatggtttc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309591144 tgagagtaaaaccagagtccctatttatctgattttttaaaatattgcacttatggtttc 309591203
Query: 519 attacaaaaaggtcagatcatcagaggcagtaactatgcaggattggaatacatttgatt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309591204 attacaaaaaggtcagatcatcagaggcagtaactatgcaggattggaatacatttgatt 309591263
Query: 579 gctaacttttaataaaagttcacgctatggtaaagattgtttaatgggtacaggactgtc 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309591264 gctaacttttaataaaagttcacgctatggtaaagattgtttaatgggtacaggactgtc 309591323
Query: 639 acttatgtgttattggagatttttctctttcacttctcagggatgaannnnnnnnnncaa 698
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 309591324 acttatgtgttattggagatttttctctttcacttctcagggatgaattttttttttcaa 309591383
Query: 699 agttttgaagttccttgtgacttagttatgatgtgagaatgattatccttctagacaaaa 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309591384 agttttgaagttccttgtgacttagttatgatgtgagaatgattatccttctagacaaaa 309591443
Query: 759 tttaaacannnnnnnaaaaagttattactacatataaagtgattttattttgagctcttt 818
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309591444 tttaaacatttttttaaaaagttattactacatataaagtgattttattttgagctcttt 309591503
Query: 819 ggttaaatattttgtctgtatactgtctcatatgaaaaatcaaatttttgctaactattg 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309591504 ggttaaatattttgtctgtatactgtctcatatgaaaaatcaaatttttgctaactattg 309591563
Query: 879 aggagtaatactctctgatttcagggagaattctaattt 917
|||||||||||||||||||||||||||||||||||||||
Sbjct: 309591564 aggagtaatactctctgatttcagggagaattctaattt 309591602
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 1 ggctgccgtaggaagtgccggcggtggtggcgccacgtcccctgccgcggcgggagaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309569725 ggctgccgtaggaagtgccggcggtggtggcgccacgtcccctgccgcggcgggagaggg 309569784
Query: 61 atcggctgggccttggggcggttggctatggcctttacgctgtactcgctgctgcaggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309569785 atcggctgggccttggggcggttggctatggcctttacgctgtactcgctgctgcaggca 309569844
Query: 121 gccctgctctgcgtcaatgccatcgccgtgctgcacgaggagcgcttcctcaagaaca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309569845 gccctgctctgcgtcaatgccatcgccgtgctgcacgaggagcgcttcctcaagaaca 309569902
Score = 202 bits (102), Expect = 2e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 179 ttggctggggaacagaccagggaattggtggattcggagaagagccaggaattaaatctc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309589291 ttggctggggaacagaccagggaattggtggattcggagaagagccaggaattaaatctc 309589350
Query: 239 aactaatgaatctgattcgatctgtaagaaccgtgatgagag 280
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309589351 aactaatgaatctgattcgatctgtaagaaccgtgatgagag 309589392
>Sscrofa_Chr15
|| Length = 157681621
Score = 65.9 bits (33), Expect = 4e-08
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 289 ataatagtaaactcaattgcaattgtattacttttactatttgggtgaagatc 341
|||| |||||||||||||| |||||| ||||||||| |||||||||||||||
Sbjct: 123378490 ataacagtaaactcaattgaaattgtgttacttttatgatttgggtgaagatc 123378438
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,850,715
Number of extensions: 410
Number of successful extensions: 410
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 5
Length of query: 917
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 896
Effective length of database: 2,808,413,156
Effective search space: 2516338187776
Effective search space used: 2516338187776
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)