Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008980
(978 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068855.1| NF-kappa-B inhibitor-interacting Ras-like pr... 238 5e-63
Alignment gi|NP_001069303.1| kappa B-ras 1 [Bos taurus]. 194 1e-49
Alignment gi|NP_001071481.1| ras-related protein Rab-7b [Bos taurus]. 73 4e-13
Alignment gi|NP_001103471.1| GTPase KRas [Bos taurus]. 72 6e-13
Alignment gi|XP_002696891.1| PREDICTED: RAP2B, member of RAS oncogene fam... 71 2e-12
Alignment gi|NP_001033777.1| ras-related protein R-Ras [Bos taurus]. 70 4e-12
Alignment gi|NP_001229275.1| GTPase HRas isoform 1 [Bos taurus]. 69 5e-12
Alignment gi|NP_001092480.1| ras-related protein R-Ras2 [Bos taurus]. 69 8e-12
Alignment gi|NP_001179871.1| ras-related protein Rap-2a [Bos taurus]. 68 1e-11
Alignment gi|XP_002692010.1| PREDICTED: RAP2A, member of RAS oncogene fam... 68 1e-11
>ref|NP_001068855.1| NF-kappa-B inhibitor-interacting Ras-like protein 2 [Bos taurus].
Length = 191
Score = 238 bits (608), Expect = 5e-63
Identities = 116/179 (64%), Positives = 139/179 (77%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGK CKVVVCG SVGKT+ILEQLLYGNH VG E ET ED+Y+ S+ETDRGV+EQ+ Y
Sbjct: 1 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
DTRGL++G ELP+H FS DG+VLVYS ++ ESFQRV V IVVLGN
Sbjct: 61 DTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN 120
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPL 658
K DL EQR+VD +VAQ WA+SEKV+LWEV+V DR++L+EPF LASK++QPQSKS+FPL
Sbjct: 121 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPL 179
>ref|NP_001069303.1| kappa B-ras 1 [Bos taurus].
Length = 128
Score = 194 bits (493), Expect = 1e-49
Identities = 93/97 (95%), Positives = 96/97 (98%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGKGCKVVVCGLLSVGKTAILEQLLYGNHT+G+ DCET+EDVYMASVETDRGVKEQLHLY
Sbjct: 1 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTIGLGDCETLEDVYMASVETDRGVKEQLHLY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRV 412
DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRV
Sbjct: 61 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRV 97
>ref|NP_001071481.1| ras-related protein Rab-7b [Bos taurus].
Length = 200
Score = 72.8 bits (177), Expect = 4e-13
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 5/167 (2%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMAS---VETDRGVKEQLHLYDT 307
K+++ G L VGKT++L + + H ED +T + S + D +K L ++DT
Sbjct: 10 KLIIIGALGVGKTSLLHRYV---HKTFYEDYQTTLGASILSKIIILEDTTLK--LQIWDT 64
Query: 308 RGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXX--VAIVVLGN 481
G + + ++ +DG VL + V +LESF+ + +VVLGN
Sbjct: 65 GGQERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPMEQPYPMVVLGN 124
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASK 622
KIDL E RQV EVAQ W + + + +EV+ + +++ F +LAS+
Sbjct: 125 KIDL-EDRQVPQEVAQGWCKEKDIPYFEVSAKNDINVVQAFEMLASR 170
>ref|NP_001103471.1| GTPase KRas [Bos taurus].
Length = 188
Score = 72.4 bits (176), Expect = 6e-13
Identities = 55/171 (32%), Positives = 84/171 (49%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ QL+ NH V D T+ED Y V D G L + DT G
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQ-NHFVDEYD-PTIEDSYRKQVVID-GETCLLDILDTAGQ 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + Y +GF+ V+++NN +SF+ + V +V++GNK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 120
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSS 649
R VD + AQ ARS + E + R+ + + F L ++ + + K S
Sbjct: 121 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 171
>ref|XP_002696891.1| PREDICTED: RAP2B, member of RAS oncogene family-like [Bos taurus].
Length = 200
Score = 70.9 bits (172), Expect = 2e-12
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Frame = +2
Query: 128 KGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCE-TMEDVYMASVETDRGVKEQLHLYD 304
KG +VV+ G ++VGKTA+ Q G+ E CE ++E+++ +E + L + D
Sbjct: 10 KGYRVVLLGSVAVGKTALATQFACGSFP---EQCEPSVEELFSKVIEVN-AAPALLEIVD 65
Query: 305 TRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNK 484
T G + V L Y +DGFV++YSV + SF+ V V +V++G K
Sbjct: 66 TVGAEHLVTLKDLYIKNSDGFVVLYSVCSEASFEAVRPLRERMGRLRGPKAVPLVLVGTK 125
Query: 485 IDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKL 625
DL QRQV + AR + EVT + + + FT + ++
Sbjct: 126 ADLDAQRQVLTAQGRALAREWRCPFLEVTAKSKLMVDQVFTQVVREM 172
>ref|NP_001033777.1| ras-related protein R-Ras [Bos taurus].
Length = 218
Score = 69.7 bits (169), Expect = 4e-12
Identities = 51/175 (29%), Positives = 79/175 (45%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ Q + + T+ED Y D GV +L + DT G
Sbjct: 31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDP--TIEDSYTKICTVD-GVPARLDILDTAGQ 87
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + + Y GF+LV+++N+ +SF V +V++GNK DL
Sbjct: 88 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 147
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 661
QRQV A ++ S V +E + R + E F L + + Q + P P
Sbjct: 148 TQRQVPRSEASTFSASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPPSP 202
>ref|NP_001229275.1| GTPase HRas isoform 1 [Bos taurus].
Length = 189
Score = 69.3 bits (168), Expect = 5e-12
Identities = 53/173 (30%), Positives = 86/173 (49%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ QL+ NH V D T+ED Y V D G L + DT G
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQ-NHFVDEYD-PTIEDSYRKQVVID-GETCLLDILDTAGQ 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + Y +GF+ V+++N+++SF+ + V +V++GNK DL+
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINHVKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFP 655
R V++ AQ ARS + E + R+ + + F L ++ Q + + P
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKVRKLSP 173
>ref|NP_001092480.1| ras-related protein R-Ras2 [Bos taurus].
Length = 204
Score = 68.6 bits (166), Expect = 8e-12
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 1/176 (0%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMAS-VETDRGVKEQLHLYDTRG 313
++VV G VGK+A+ Q + + T+ED Y V DR + L + DT G
Sbjct: 16 RLVVVGGGGVGKSALTIQFIQSYFVTDYDP--TIEDSYTKQCVIDDRAAR--LDILDTAG 71
Query: 314 LQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDL 493
+E + + Y +GF+LV+SV + SF+ + ++++GNK DL
Sbjct: 72 QEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL 131
Query: 494 SEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 661
QRQV E QQ AR KV E + R + + F L + + Q + P P
Sbjct: 132 DHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQEQECPPSP 187
>ref|NP_001179871.1| ras-related protein Rap-2a [Bos taurus].
Length = 183
Score = 68.2 bits (165), Expect = 1e-11
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
KVVV G VGK+A+ Q + G + T+ED Y +E D L + DT G
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDP--TIEDFYRKEIEVDSS-PSVLEILDTAGT 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
++ + Y GF+LVYS+ N +SFQ + V ++++GNK+DL
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 497 EQRQVDAE----VAQQW 535
+R+V + +A++W
Sbjct: 122 SEREVSSNEGRALAEEW 138
>ref|XP_002692010.1| PREDICTED: RAP2A, member of RAS oncogene family-like [Bos taurus].
Length = 183
Score = 68.2 bits (165), Expect = 1e-11
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
KVVV G VGK+A+ Q + G + T+ED Y +E D L + DT G
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDP--TIEDFYRKEIEVDSS-PSVLEILDTAGT 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
++ + Y GF+LVYS+ N +SFQ + V ++++GNK+DL
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 497 EQRQVDAE----VAQQW 535
+R+V + +A++W
Sbjct: 122 SEREVSSNEGRALAEEW 138
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,099,461
Number of extensions: 882480
Number of successful extensions: 3530
Number of sequences better than 1.0e-05: 82
Number of HSP's gapped: 3427
Number of HSP's successfully gapped: 82
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008980
(978 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534244.1| PREDICTED: similar to kappa B-ras 1 [Canis fami... 326 2e-89
Alignment gi|XP_537638.1| PREDICTED: similar to NFKB inhibitor interactin... 238 5e-63
Alignment gi|XP_545693.2| PREDICTED: similar to Ras-related protein Rab-7... 75 1e-13
Alignment gi|XP_848668.1| PREDICTED: similar to Ras-related protein Rab-7... 75 1e-13
Alignment gi|XP_851115.1| PREDICTED: similar to Ras homolog enriched in b... 74 3e-13
Alignment gi|XP_540523.2| PREDICTED: similar to Transforming protein p21/... 70 2e-12
Alignment gi|XP_533617.1| PREDICTED: similar to Ras-related protein R-Ras... 70 4e-12
Alignment gi|XP_537559.2| PREDICTED: similar to RAP2C, member of RAS onco... 69 5e-12
Alignment gi|XP_848629.1| PREDICTED: similar to Transforming protein N-Ra... 68 2e-11
Alignment gi|XP_856387.1| PREDICTED: similar to ras related v-ral simian ... 67 2e-11
>ref|XP_534244.1| PREDICTED: similar to kappa B-ras 1 [Canis familiaris].
Length = 192
Score = 326 bits (835), Expect = 2e-89
Identities = 165/182 (90%), Positives = 167/182 (91%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGKGCKVVVCGLLSVGKTAILEQLLYGNHT+GMEDCETMEDVYMASVETDRGVKEQLHLY
Sbjct: 1 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTIGMEDCETMEDVYMASVETDRGVKEQLHLY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRV VAIVVLGN
Sbjct: 61 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVELLKKEIDKFKDKKEVAIVVLGN 120
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 661
KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDR+TLIEPFTLLASKLSQPQSKSSFPLP
Sbjct: 121 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRRTLIEPFTLLASKLSQPQSKSSFPLP 180
Query: 662 GR 667
GR
Sbjct: 181 GR 182
>ref|XP_537638.1| PREDICTED: similar to NFKB inhibitor interacting Ras-like 2 [Canis
familiaris].
Length = 191
Score = 238 bits (608), Expect = 5e-63
Identities = 116/179 (64%), Positives = 139/179 (77%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGK CKVVVCG SVGKT+ILEQLLYGNH VG E ET ED+Y+ S+ETDRGV+EQ+ Y
Sbjct: 1 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
DTRGL++G ELP+H FS DG+VLVYS ++ ESFQRV V IVVLGN
Sbjct: 61 DTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN 120
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPL 658
K DL EQR+VD +VAQ WA+SEKV+LWEV+V DR++L+EPF LASK++QPQSKS+FPL
Sbjct: 121 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPL 179
>ref|XP_545693.2| PREDICTED: similar to Ras-related protein Rab-7b isoform 1 [Canis
familiaris].
Length = 200
Score = 74.7 bits (182), Expect = 1e-13
Identities = 55/174 (31%), Positives = 93/174 (53%), Gaps = 6/174 (3%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMAS---VETDRGVKEQLHLYDT 307
K+++ G L VGKT++L Q + H ED +T + S + D +K L ++DT
Sbjct: 10 KLIIIGALGVGKTSLLHQYV---HKTFYEDYQTTLGASILSKIIILDDTTLK--LQIWDT 64
Query: 308 RGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVA--IVVLGN 481
G + + ++ +DG +L + V +LESF+ + + +VVLGN
Sbjct: 65 GGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDTWRGDVLAKTIPMEPSYPMVVLGN 124
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASK-LSQPQS 640
KIDL++ RQV EVAQ W + + + +EV+ + +++ F +LAS+ LS+ QS
Sbjct: 125 KIDLAD-RQVPQEVAQGWCKEKDIPYFEVSAKNDINVVQAFEMLASRALSRYQS 177
>ref|XP_848668.1| PREDICTED: similar to Ras-related protein Rab-7b isoform 2 [Canis
familiaris].
Length = 200
Score = 74.7 bits (182), Expect = 1e-13
Identities = 55/174 (31%), Positives = 93/174 (53%), Gaps = 6/174 (3%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMAS---VETDRGVKEQLHLYDT 307
K+++ G L VGKT++L Q + H ED +T + S + D +K L ++DT
Sbjct: 10 KLIIIGALGVGKTSLLHQYV---HKTFYEDYQTTLGASILSKIIILDDTTLK--LQIWDT 64
Query: 308 RGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVA--IVVLGN 481
G + + ++ +DG +L + V +LESF+ + + +VVLGN
Sbjct: 65 GGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDTWRGDVLAKTIPMEPSYPMVVLGN 124
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASK-LSQPQS 640
KIDL++ RQV EVAQ W + + + +EV+ + +++ F +LAS+ LS+ QS
Sbjct: 125 KIDLAD-RQVPQEVAQGWCKEKDIPYFEVSAKNDINVVQAFEMLASRALSRYQS 177
>ref|XP_851115.1| PREDICTED: similar to Ras homolog enriched in brain like 1 [Canis
familiaris].
Length = 183
Score = 73.6 bits (179), Expect = 3e-13
Identities = 51/168 (30%), Positives = 81/168 (48%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
KVV+ G SVGKT++ Q + G G + T+E+ Y V + + LHL DT G
Sbjct: 8 KVVILGYRSVGKTSLAHQFVEGEFLEGYDP--TVENTYSKIVTLGKD-EFHLHLVDTAGQ 64
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
E LP + G+VLVYSV +L SFQ + + +V++GNK DLS
Sbjct: 65 DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIASLYQKLHEGHGKTRLPVVLVGNKADLS 124
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQS 640
R+V A ++ A S E + + + FT + ++++ ++
Sbjct: 125 PDREVQAVEGKKLAESWGATFMESSARENQLTRGIFTKVIQEIARVEN 172
>ref|XP_540523.2| PREDICTED: similar to Transforming protein p21/H-Ras-1 (c-H-ras)
[Canis familiaris].
Length = 226
Score = 70.5 bits (171), Expect = 2e-12
Identities = 54/173 (31%), Positives = 85/173 (49%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ QL+ NH V D T+ED Y V D G L + DT G
Sbjct: 42 KLVVVGAGGVGKSALTIQLIQ-NHFVDEYD-PTIEDSYRKQVVID-GETCLLDILDTAGQ 98
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + Y +GF+ V+++NN +SF+ + V +V++GNK DL+
Sbjct: 99 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 158
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFP 655
R V++ AQ ARS + E + R+ + + F L ++ Q + + P
Sbjct: 159 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKVRKLSP 210
>ref|XP_533617.1| PREDICTED: similar to Ras-related protein R-Ras (p23) [Canis
familiaris].
Length = 218
Score = 69.7 bits (169), Expect = 4e-12
Identities = 52/175 (29%), Positives = 78/175 (44%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ Q + + T+ED Y D GV +L + DT G
Sbjct: 31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDP--TIEDSYTKICTVD-GVPARLDILDTAGQ 87
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + + Y GF+LV+++N+ +SF V IV++GNK DL
Sbjct: 88 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADLE 147
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 661
QRQV A + S V +E + R + E F L + + Q + P P
Sbjct: 148 TQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPPSP 202
>ref|XP_537559.2| PREDICTED: similar to RAP2C, member of RAS oncogene family [Canis
familiaris].
Length = 200
Score = 69.3 bits (168), Expect = 5e-12
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Frame = +2
Query: 128 KGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCE-TMEDVYMASVETDRGVKEQLHLYD 304
KG +VV+ G ++VGKTA+ Q G+ E CE ++E+++ +E + L + D
Sbjct: 10 KGYRVVLLGSVAVGKTALATQFACGSFP---EQCEPSVEELFSKVIEVN-AAPALLEIVD 65
Query: 305 TRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNK 484
T G + V L Y +DGFV++YSV + SF+ V V +V++G K
Sbjct: 66 TVGAEHLVTLKDLYIKNSDGFVVLYSVCSEASFEAVRPLRERMGRLRGPKAVPLVLVGTK 125
Query: 485 IDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKL 625
DL +RQV + AR + EVT + + + FT + ++
Sbjct: 126 ADLDAERQVLTARGRALAREWRCPFLEVTAKSKLMVDQVFTQVVREM 172
>ref|XP_848629.1| PREDICTED: similar to Transforming protein N-Ras [Canis
familiaris].
Length = 189
Score = 67.8 bits (164), Expect = 2e-11
Identities = 53/169 (31%), Positives = 82/169 (48%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ QL+ NH V D T+ED Y V D G L + DT G
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQ-NHFVDEYD-PTIEDSYRKQVVID-GETCLLDILDTAGQ 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + Y +GF+ V+++NN +SF + V +V++GNK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSK 643
R VD + A + A+S + E + R+ + + F L ++ Q + K
Sbjct: 121 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMK 169
>ref|XP_856387.1| PREDICTED: similar to ras related v-ral simian leukemia viral
oncogene homolog A isoform 3 [Canis familiaris].
Length = 216
Score = 67.4 bits (163), Expect = 2e-11
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVG-------MEDCE-TMEDVYMASVETDRGVKEQL 292
KV++ G VGK+A+ Q +Y + G +ED E T D Y V D G + Q+
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEVSAGFIMGIKFVEDYEPTKADSYRKKVVLD-GEEVQI 74
Query: 293 HLYDTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVV 472
+ DT G ++ + +YF +GF+ V+S+ +ESF V ++
Sbjct: 75 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 134
Query: 473 LGNKIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPF 604
+GNK DL ++RQV E A+ A V E + R + + F
Sbjct: 135 VGNKSDLEDKRQVSVEEAKTRADQWNVNYVETSAKTRANVDKVF 178
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,460,228
Number of extensions: 903182
Number of successful extensions: 3623
Number of sequences better than 1.0e-05: 65
Number of HSP's gapped: 3552
Number of HSP's successfully gapped: 65
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008980
(978 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358380.1| PREDICTED: NF-kappa-B inhibitor-interacting ... 327 5e-90
Alignment gi|XP_003131456.1| PREDICTED: NF-kappa-B inhibitor-interacting ... 238 3e-63
Alignment gi|XP_003358086.1| PREDICTED: NF-kappa-B inhibitor-interacting ... 155 2e-38
Alignment gi|XP_003355422.1| PREDICTED: GTPase RhebL1-like [Sus scrofa]. 74 1e-13
Alignment gi|XP_003126150.1| PREDICTED: GTPase RhebL1-like [Sus scrofa]. 74 1e-13
Alignment gi|XP_003126475.1| PREDICTED: GTPase KRas-like [Sus scrofa]. 72 4e-13
Alignment gi|XP_003357460.1| PREDICTED: ras-related protein Rab-7b-like [... 72 5e-13
Alignment gi|XP_003356046.1| PREDICTED: ras-related protein R-Ras-like [S... 70 2e-12
Alignment gi|NP_001038002.1| GTPase NRas precursor [Sus scrofa]. 68 9e-12
Alignment gi|XP_003360264.1| PREDICTED: ras-related protein Ral-A-like [S... 68 9e-12
>ref|XP_003358380.1| PREDICTED: NF-kappa-B inhibitor-interacting Ras-like protein 1-like
[Sus scrofa].
Length = 192
Score = 327 bits (839), Expect = 5e-90
Identities = 167/182 (91%), Positives = 167/182 (91%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY
Sbjct: 1 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRV VAIVVLGN
Sbjct: 61 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVELLKKEIDKFKDKKEVAIVVLGN 120
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 661
KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP
Sbjct: 121 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 180
Query: 662 GR 667
GR
Sbjct: 181 GR 182
>ref|XP_003131456.1| PREDICTED: NF-kappa-B inhibitor-interacting Ras-like protein 2-like
isoform 1 [Sus scrofa].
Length = 191
Score = 238 bits (608), Expect = 3e-63
Identities = 116/179 (64%), Positives = 139/179 (77%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGK CKVVVCG SVGKT+ILEQLLYGNH VG E ET ED+Y+ S+ETDRGV+EQ+ Y
Sbjct: 1 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
DTRGL++G ELP+H FS DG+VLVYS ++ ESFQRV V IVVLGN
Sbjct: 61 DTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN 120
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPL 658
K DL EQR+VD +VAQ WA+SEKV+LWEV+V DR++L+EPF LASK++QPQSKS+FPL
Sbjct: 121 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPL 179
>ref|XP_003358086.1| PREDICTED: NF-kappa-B inhibitor-interacting Ras-like protein 2-like
isoform 2 [Sus scrofa].
Length = 135
Score = 155 bits (393), Expect = 2e-38
Identities = 88/179 (49%), Positives = 105/179 (58%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGK CKVVVCG SVGKT+ILEQLLYGNH VG E ET ED+Y+ S+ETD
Sbjct: 1 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETD---------- 50
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
RG++E V IVVLGN
Sbjct: 51 --RGVRE--------------------------------------------QVTIVVLGN 64
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPL 658
K DL EQR+VD +VAQ WA+SEKV+LWEV+V DR++L+EPF LASK++QPQSKS+FPL
Sbjct: 65 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPL 123
>ref|XP_003355422.1| PREDICTED: GTPase RhebL1-like [Sus scrofa].
Length = 183
Score = 73.9 bits (180), Expect = 1e-13
Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 1/169 (0%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCE-TMEDVYMASVETDRGVKEQLHLYDTRG 313
KVV+ G SVGKT++ Q + G +ED + T+E+ Y V + + LHL DT G
Sbjct: 8 KVVILGYRSVGKTSLAHQFVEGEF---LEDYDPTVENTYSKIVTLGKD-EFHLHLVDTAG 63
Query: 314 LQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDL 493
E LP + G+VLVYSV +L SFQ + + +V++GNK DL
Sbjct: 64 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRLPVVLVGNKADL 123
Query: 494 SEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQS 640
S R+V A ++ A S E + D + FT + ++++ ++
Sbjct: 124 SPDREVQAVEGKKLAESWGATFMESSARDNQLTQGIFTKVIQEIARVEN 172
>ref|XP_003126150.1| PREDICTED: GTPase RhebL1-like [Sus scrofa].
Length = 183
Score = 73.9 bits (180), Expect = 1e-13
Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 1/169 (0%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCE-TMEDVYMASVETDRGVKEQLHLYDTRG 313
KVV+ G SVGKT++ Q + G +ED + T+E+ Y V + + LHL DT G
Sbjct: 8 KVVILGYRSVGKTSLAHQFVEGEF---LEDYDPTVENTYSKIVTLGKD-EFHLHLVDTAG 63
Query: 314 LQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDL 493
E LP + G+VLVYSV +L SFQ + + +V++GNK DL
Sbjct: 64 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRLPVVLVGNKADL 123
Query: 494 SEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQS 640
S R+V A ++ A S E + D + FT + ++++ ++
Sbjct: 124 SPDREVQAVEGKKLAESWGATFMESSARDNQLTQGIFTKVIQEIARVEN 172
>ref|XP_003126475.1| PREDICTED: GTPase KRas-like [Sus scrofa].
Length = 188
Score = 72.4 bits (176), Expect = 4e-13
Identities = 55/171 (32%), Positives = 84/171 (49%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ QL+ NH V D T+ED Y V D G L + DT G
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQ-NHFVDEYD-PTIEDSYRKQVVID-GETCLLDILDTAGQ 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + Y +GF+ V+++NN +SF+ + V +V++GNK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 120
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSS 649
R VD + AQ ARS + E + R+ + + F L ++ + + K S
Sbjct: 121 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 171
>ref|XP_003357460.1| PREDICTED: ras-related protein Rab-7b-like [Sus scrofa].
Length = 200
Score = 72.0 bits (175), Expect = 5e-13
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMAS---VETDRGVKEQLHLYDT 307
K+++ G L VGKT++L Q + H ED +T + S + D +K L ++DT
Sbjct: 10 KLIIIGALGVGKTSLLHQYV---HKTFYEDYQTTLGASILSKIIILDDTTLK--LQIWDT 64
Query: 308 RGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVA--IVVLGN 481
G + + ++ +DG +L + V +LESF+ + + +VVLGN
Sbjct: 65 GGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALETWRGDVLAKTIPMEQSYPMVVLGN 124
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASK 622
KIDL++ RQV EVAQ W + + + +EV+ + +++ F +LA +
Sbjct: 125 KIDLAD-RQVPQEVAQGWCKEKDIPYFEVSAKNDINVVQAFEMLAGR 170
>ref|XP_003356046.1| PREDICTED: ras-related protein R-Ras-like [Sus scrofa].
Length = 218
Score = 70.1 bits (170), Expect = 2e-12
Identities = 52/175 (29%), Positives = 79/175 (45%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ Q + + T+ED Y D GV +L + DT G
Sbjct: 31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDP--TIEDSYTKICTVD-GVPARLDILDTAGQ 87
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + + Y GF+LV+++N+ +SF V IV++GNK DL
Sbjct: 88 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADLE 147
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 661
QRQV A ++ S V +E + R + E F L + + Q + P P
Sbjct: 148 TQRQVPRSEASAFSNSHHVAYFEASAKLRLNVDEAFEQLVRAVRKFQEQELPPSP 202
>ref|NP_001038002.1| GTPase NRas precursor [Sus scrofa].
Length = 189
Score = 67.8 bits (164), Expect = 9e-12
Identities = 53/169 (31%), Positives = 82/169 (48%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ QL+ NH V D T+ED Y V D G L + DT G
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQ-NHFVDEYD-PTIEDSYRKQVVID-GETCLLDILDTAGQ 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + Y +GF+ V+++NN +SF + V +V++GNK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSK 643
R VD + A + A+S + E + R+ + + F L ++ Q + K
Sbjct: 121 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMK 169
>ref|XP_003360264.1| PREDICTED: ras-related protein Ral-A-like [Sus scrofa].
Length = 206
Score = 67.8 bits (164), Expect = 9e-12
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCE-TMEDVYMASVETDRGVKEQLHLYDTRG 313
KV++ G VGK+A+ Q +Y +ED E T D Y V D G + Q+ + DT G
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEF---VEDYEPTKADSYRKKVVLD-GEEVQIDILDTAG 71
Query: 314 LQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDL 493
++ + +YF +GF+ V+S+ LESF V +++GNK DL
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVFSITELESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
Query: 494 SEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPF 604
++RQV E A+ A V E + R + + F
Sbjct: 132 EDKRQVSVEEAKTRADQWNVNYVETSAKTRANVDKVF 168
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,923,960
Number of extensions: 565996
Number of successful extensions: 2273
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 2204
Number of HSP's successfully gapped: 65
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008980
(978 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076015.2| NF-kappa-B inhibitor-interacting Ras-like prote... 320 1e-87
Alignment gi|NP_082300.1| NF-kappa-B inhibitor-interacting Ras-like prote... 239 2e-63
Alignment gi|NP_081243.1| GTPase RhebL1 precursor [Mus musculus]. 76 5e-14
Alignment gi|NP_067259.4| GTPase KRas [Mus musculus]. 73 3e-13
Alignment gi|NP_033091.1| GTP-binding protein Rit2 [Mus musculus]. 70 2e-12
Alignment gi|NP_001123915.1| GTPase HRas isoform 1 [Mus musculus]. 70 2e-12
Alignment gi|NP_032310.2| GTPase HRas isoform 1 [Mus musculus]. 70 2e-12
Alignment gi|NP_033127.1| ras-related protein R-Ras precursor [Mus muscul... 70 3e-12
Alignment gi|NP_001028420.2| hypothetical protein LOC212539 [Mus musculus]. 69 4e-12
Alignment gi|NP_080122.2| ras-related protein R-Ras2 precursor [Mus muscu... 69 7e-12
>ref|NP_076015.2| NF-kappa-B inhibitor-interacting Ras-like protein 1 [Mus musculus].
Length = 192
Score = 320 bits (819), Expect = 1e-87
Identities = 159/182 (87%), Positives = 167/182 (91%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGKGCKVV+CGLLSVGKTAILEQLLYGNHT+GMEDCET+EDVYMASVETDRGVKEQLHLY
Sbjct: 1 MGKGCKVVICGLLSVGKTAILEQLLYGNHTIGMEDCETLEDVYMASVETDRGVKEQLHLY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
DTRGLQ+GVELPKHYFSFADGFVLVYSVNNLESFQRV VAIVVLGN
Sbjct: 61 DTRGLQKGVELPKHYFSFADGFVLVYSVNNLESFQRVELLKKEIDKFKDKKEVAIVVLGN 120
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 661
K+DLSEQRQVDA+VAQQWARSEKV+LWEVTVTDR+TLIEPFTLLASKLSQPQSKSSFPLP
Sbjct: 121 KLDLSEQRQVDADVAQQWARSEKVKLWEVTVTDRRTLIEPFTLLASKLSQPQSKSSFPLP 180
Query: 662 GR 667
GR
Sbjct: 181 GR 182
>ref|NP_082300.1| NF-kappa-B inhibitor-interacting Ras-like protein 2 [Mus musculus].
Length = 191
Score = 239 bits (610), Expect = 2e-63
Identities = 117/179 (65%), Positives = 139/179 (77%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGK CKVVVCG SVGKT+ILEQLLYGNH VG E ET ED+Y+ S+ETDRGV+EQ+ Y
Sbjct: 1 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
DTRGL++G ELPKH FS DG+VLVYS ++ ESFQRV V IVVLGN
Sbjct: 61 DTRGLRDGAELPKHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN 120
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPL 658
K DL EQR+VD +VAQ WA+SEKV+LWEV+V DR++L+EPF LASK++QPQSKS+FPL
Sbjct: 121 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFIYLASKMTQPQSKSAFPL 179
>ref|NP_081243.1| GTPase RhebL1 precursor [Mus musculus].
Length = 184
Score = 75.9 bits (185), Expect = 5e-14
Identities = 51/168 (30%), Positives = 83/168 (49%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
KV + G SVGKT++ Q + G G + T+E+ Y +V + + LHL DT G
Sbjct: 8 KVAILGYRSVGKTSLAHQFVEGEFLEGYDP--TVENTYSKTVTLGKD-EFHLHLVDTAGQ 64
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
E LP G+VLVYSVN+L SFQ V ++++++GNK DLS
Sbjct: 65 DEYSILPYSLIIGVHGYVLVYSVNSLRSFQIVKNLYQKLHEGHGKTRLSVLLVGNKADLS 124
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQS 640
+R+V A ++ A S E + D + + F + ++++ ++
Sbjct: 125 PEREVQAVEGKKLAESWGAMFMESSARDNQLTQDVFIKVIQEIARVEN 172
>ref|NP_067259.4| GTPase KRas [Mus musculus].
Length = 188
Score = 73.2 bits (178), Expect = 3e-13
Identities = 55/171 (32%), Positives = 85/171 (49%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ QL+ NH V D T+ED Y V D G L + DT G
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQ-NHFVDEYD-PTIEDSYRKQVVID-GETCLLDILDTAGQ 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + Y +GF+ V+++NN +SF+ + V +V++GNK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 120
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSS 649
R VD + AQ+ ARS + E + R+ + + F L ++ + + K S
Sbjct: 121 PSRTVDTKQAQELARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 171
>ref|NP_033091.1| GTP-binding protein Rit2 [Mus musculus].
Length = 217
Score = 70.1 bits (170), Expect = 2e-12
Identities = 49/171 (28%), Positives = 76/171 (44%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
KVV+ G VGK+A+ Q + +H T+ED Y V D L + DT G
Sbjct: 22 KVVMLGAGGVGKSAVTMQFI--SHQFPDYHDPTIEDAYKTQVRIDNE-PAYLDILDTAGQ 78
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
E + + Y +GF++ YSV + +SFQ + +V++GNKIDL
Sbjct: 79 AEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLE 138
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSS 649
+ RQV E AR +E + R + + F L ++ + +S S
Sbjct: 139 QFRQVSTEEGMNLARDYNCAFFETSAALRFGIDDAFQGLVREIRRKESMLS 189
>ref|NP_001123915.1| GTPase HRas isoform 1 [Mus musculus].
Length = 189
Score = 70.1 bits (170), Expect = 2e-12
Identities = 54/173 (31%), Positives = 85/173 (49%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ QL+ NH V D T+ED Y V D G L + DT G
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQ-NHFVDEYD-PTIEDSYRKQVVID-GETCLLDILDTAGQ 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + Y +GF+ V+++NN +SF+ + V +V++GNK DL+
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFP 655
R V++ AQ ARS + E + R+ + + F L ++ Q + + P
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNP 173
>ref|NP_032310.2| GTPase HRas isoform 1 [Mus musculus].
Length = 189
Score = 70.1 bits (170), Expect = 2e-12
Identities = 54/173 (31%), Positives = 85/173 (49%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ QL+ NH V D T+ED Y V D G L + DT G
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQ-NHFVDEYD-PTIEDSYRKQVVID-GETCLLDILDTAGQ 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + Y +GF+ V+++NN +SF+ + V +V++GNK DL+
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFP 655
R V++ AQ ARS + E + R+ + + F L ++ Q + + P
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNP 173
>ref|NP_033127.1| ras-related protein R-Ras precursor [Mus musculus].
Length = 218
Score = 69.7 bits (169), Expect = 3e-12
Identities = 51/179 (28%), Positives = 82/179 (45%)
Frame = +2
Query: 125 GKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYD 304
G+ K+VV G VGK+A+ Q + + T+ED Y D G+ +L + D
Sbjct: 27 GETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP--TIEDSYTKICTVD-GIPARLDILD 83
Query: 305 TRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNK 484
T G +E + + Y +GF+LV+++N+ +SF V IV++GNK
Sbjct: 84 TAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNK 143
Query: 485 IDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 661
DL QRQV A ++ S + +E + R + E F L + + Q + P P
Sbjct: 144 ADLENQRQVLRSEASSFSASHHMTYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPPSP 202
>ref|NP_001028420.2| hypothetical protein LOC212539 [Mus musculus].
Length = 200
Score = 69.3 bits (168), Expect = 4e-12
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 1/158 (0%)
Frame = +2
Query: 128 KGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCE-TMEDVYMASVETDRGVKEQLHLYD 304
K +VVV G ++VGKTA+ Q G E CE ++E+++ +E +R L + D
Sbjct: 10 KDYRVVVLGSVAVGKTALATQFACGRFP---ERCEPSVEELFSKVIEVNRA-PALLEIVD 65
Query: 305 TRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNK 484
T G + V L Y +DGFV++YSV + SFQ V V +V++G K
Sbjct: 66 TVGAEHLVTLKDLYIRNSDGFVVLYSVCDEASFQAVRPLRERMGRLRGSRAVPLVLVGTK 125
Query: 485 IDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIE 598
DL +RQV + AR + E+T T KT+++
Sbjct: 126 ADLDAERQVLTAQGRALAREWRCPFLEIT-TKSKTMVD 162
>ref|NP_080122.2| ras-related protein R-Ras2 precursor [Mus musculus].
Length = 204
Score = 68.6 bits (166), Expect = 7e-12
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 1/176 (0%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMAS-VETDRGVKEQLHLYDTRG 313
++VV G VGK+A+ Q + + T+ED Y V DR + L + DT G
Sbjct: 16 RLVVVGGGGVGKSALTIQFIQSYFVTDYDP--TIEDSYTKQCVIDDRAAR--LDILDTAG 71
Query: 314 LQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDL 493
+E + + Y +GF+LV+SV + SF+ + ++++GNK DL
Sbjct: 72 QEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL 131
Query: 494 SEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 661
QRQV E QQ AR KV E + R + + F L + + Q + P P
Sbjct: 132 DHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQEQECPPSP 187
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,830,287
Number of extensions: 760525
Number of successful extensions: 2981
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 2891
Number of HSP's successfully gapped: 78
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008980
(978 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065078.1| NF-kappa-B inhibitor-interacting Ras-like prote... 326 2e-89
Alignment gi|NP_001138399.1| NF-kappa-B inhibitor-interacting Ras-like pr... 238 5e-63
Alignment gi|NP_060065.2| NF-kappa-B inhibitor-interacting Ras-like prote... 238 5e-63
Alignment gi|NP_001001349.1| NF-kappa-B inhibitor-interacting Ras-like pr... 238 5e-63
Alignment gi|NP_001138400.1| NF-kappa-B inhibitor-interacting Ras-like pr... 155 4e-38
Alignment gi|NP_001138401.1| NF-kappa-B inhibitor-interacting Ras-like pr... 92 9e-19
Alignment gi|NP_653194.1| GTPase RhebL1 precursor [Homo sapiens]. 74 2e-13
Alignment gi|NP_004976.2| GTPase KRas isoform b precursor [Homo sapiens]. 72 6e-13
Alignment gi|NP_203524.1| GTPase KRas isoform a precursor [Homo sapiens]. 72 8e-13
Alignment gi|NP_001157994.1| ras-related protein Rab-7b [Homo sapiens]. 72 1e-12
>ref|NP_065078.1| NF-kappa-B inhibitor-interacting Ras-like protein 1 [Homo sapiens].
Length = 192
Score = 326 bits (835), Expect = 2e-89
Identities = 165/182 (90%), Positives = 167/182 (91%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGKGCKVVVCGLLSVGKTAILEQLLYGNHT+GMEDCETMEDVYMASVETDRGVKEQLHLY
Sbjct: 1 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTIGMEDCETMEDVYMASVETDRGVKEQLHLY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRV VAIVVLGN
Sbjct: 61 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVELLKKEIDKFKDKKEVAIVVLGN 120
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 661
KIDLSEQRQVDAEVAQQWA+SEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP
Sbjct: 121 KIDLSEQRQVDAEVAQQWAKSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP 180
Query: 662 GR 667
GR
Sbjct: 181 GR 182
>ref|NP_001138399.1| NF-kappa-B inhibitor-interacting Ras-like protein 2 isoform a [Homo
sapiens].
Length = 191
Score = 238 bits (608), Expect = 5e-63
Identities = 116/179 (64%), Positives = 139/179 (77%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGK CKVVVCG SVGKT+ILEQLLYGNH VG E ET ED+Y+ S+ETDRGV+EQ+ Y
Sbjct: 1 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
DTRGL++G ELP+H FS DG+VLVYS ++ ESFQRV V IVVLGN
Sbjct: 61 DTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN 120
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPL 658
K DL EQR+VD +VAQ WA+SEKV+LWEV+V DR++L+EPF LASK++QPQSKS+FPL
Sbjct: 121 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPL 179
>ref|NP_060065.2| NF-kappa-B inhibitor-interacting Ras-like protein 2 isoform a [Homo
sapiens].
Length = 191
Score = 238 bits (608), Expect = 5e-63
Identities = 116/179 (64%), Positives = 139/179 (77%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGK CKVVVCG SVGKT+ILEQLLYGNH VG E ET ED+Y+ S+ETDRGV+EQ+ Y
Sbjct: 1 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
DTRGL++G ELP+H FS DG+VLVYS ++ ESFQRV V IVVLGN
Sbjct: 61 DTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN 120
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPL 658
K DL EQR+VD +VAQ WA+SEKV+LWEV+V DR++L+EPF LASK++QPQSKS+FPL
Sbjct: 121 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPL 179
>ref|NP_001001349.1| NF-kappa-B inhibitor-interacting Ras-like protein 2 isoform a [Homo
sapiens].
Length = 191
Score = 238 bits (608), Expect = 5e-63
Identities = 116/179 (64%), Positives = 139/179 (77%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGK CKVVVCG SVGKT+ILEQLLYGNH VG E ET ED+Y+ S+ETDRGV+EQ+ Y
Sbjct: 1 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY 60
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
DTRGL++G ELP+H FS DG+VLVYS ++ ESFQRV V IVVLGN
Sbjct: 61 DTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN 120
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPL 658
K DL EQR+VD +VAQ WA+SEKV+LWEV+V DR++L+EPF LASK++QPQSKS+FPL
Sbjct: 121 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPL 179
>ref|NP_001138400.1| NF-kappa-B inhibitor-interacting Ras-like protein 2 isoform b [Homo
sapiens].
Length = 135
Score = 155 bits (393), Expect = 4e-38
Identities = 88/179 (49%), Positives = 105/179 (58%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLY 301
MGK CKVVVCG SVGKT+ILEQLLYGNH VG E ET ED+Y+ S+ETD
Sbjct: 1 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETD---------- 50
Query: 302 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGN 481
RG++E V IVVLGN
Sbjct: 51 --RGVRE--------------------------------------------QVTIVVLGN 64
Query: 482 KIDLSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPL 658
K DL EQR+VD +VAQ WA+SEKV+LWEV+V DR++L+EPF LASK++QPQSKS+FPL
Sbjct: 65 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPL 123
>ref|NP_001138401.1| NF-kappa-B inhibitor-interacting Ras-like protein 2 isoform c [Homo
sapiens].
Length = 97
Score = 91.7 bits (226), Expect = 9e-19
Identities = 42/57 (73%), Positives = 48/57 (84%)
Frame = +2
Query: 122 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQL 292
MGK CKVVVCG SVGKT+ILEQLLYGNH VG E ET ED+Y+ S+ETDRGV+EQ+
Sbjct: 1 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQI 57
>ref|NP_653194.1| GTPase RhebL1 precursor [Homo sapiens].
Length = 183
Score = 74.3 bits (181), Expect = 2e-13
Identities = 51/168 (30%), Positives = 82/168 (48%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
KVV+ G VGKT++ Q + G + G + T+E+ Y V + + LHL DT G
Sbjct: 8 KVVILGYRCVGKTSLAHQFVEGEFSEGYDP--TVENTYSKIVTLGKD-EFHLHLVDTAGQ 64
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
E LP + G+VLVYSV +L SFQ + V +V++GNK DLS
Sbjct: 65 DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 124
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQS 640
+R+V A ++ A S E + + + FT + ++++ ++
Sbjct: 125 PEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVEN 172
>ref|NP_004976.2| GTPase KRas isoform b precursor [Homo sapiens].
Length = 188
Score = 72.4 bits (176), Expect = 6e-13
Identities = 55/171 (32%), Positives = 84/171 (49%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ QL+ NH V D T+ED Y V D G L + DT G
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQ-NHFVDEYD-PTIEDSYRKQVVID-GETCLLDILDTAGQ 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + Y +GF+ V+++NN +SF+ + V +V++GNK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 120
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSS 649
R VD + AQ ARS + E + R+ + + F L ++ + + K S
Sbjct: 121 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 171
>ref|NP_203524.1| GTPase KRas isoform a precursor [Homo sapiens].
Length = 189
Score = 72.0 bits (175), Expect = 8e-13
Identities = 55/169 (32%), Positives = 83/169 (49%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+VV G VGK+A+ QL+ NH V D T+ED Y V D G L + DT G
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQ-NHFVDEYD-PTIEDSYRKQVVID-GETCLLDILDTAGQ 61
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQRVXXXXXXXXXXXXXXXVAIVVLGNKIDLS 496
+E + Y +GF+ V+++NN +SF+ + V +V++GNK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 120
Query: 497 EQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSK 643
R VD + AQ ARS + E + R+ + + F L ++ Q + K
Sbjct: 121 PSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLK 169
>ref|NP_001157994.1| ras-related protein Rab-7b [Homo sapiens].
Length = 199
Score = 71.6 bits (174), Expect = 1e-12
Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 3/171 (1%)
Frame = +2
Query: 137 KVVVCGLLSVGKTAILEQLLYGNHTVGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGL 316
K+++ G + VGKT++L Q Y + T E T+ ++ + +L ++DT G
Sbjct: 10 KLIIVGAIGVGKTSLLHQ--YVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQ 67
Query: 317 QEGVELPKHYFSFADGFVLVYSVNNLESFQR--VXXXXXXXXXXXXXXXVAIVVLGNKID 490
+ + ++ +DG +L + V +LESF+ + +V+LGNKID
Sbjct: 68 ERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKID 127
Query: 491 LSEQRQVDAEVAQQWARSEKVRLWEVTVTDRKTLIEPFTLLASK-LSQPQS 640
L++ R+V EVAQ W R + + +EV+ + +++ F +LAS+ LS+ QS
Sbjct: 128 LAD-RKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQS 177
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,929,413
Number of extensions: 896100
Number of successful extensions: 3749
Number of sequences better than 1.0e-05: 102
Number of HSP's gapped: 3604
Number of HSP's successfully gapped: 103
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008980
(978 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 965 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 965 bits (487), Expect = 0.0
Identities = 506/512 (98%), Gaps = 4/512 (0%)
Strand = Plus / Minus
Query: 456 aggtggcaattgttgtattaggaaacaaaattgatctttctgagcagagacaggtggacg 515
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 12135045 aggtggcaattgttgtattaggaaacaaaattgatctttctgagcaaagacaggtggacg 12134986
Query: 516 cagaagtggcacaacagtgggccaggagtgagaaggtgcggctgtgggaggtgacagtca 575
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 12134985 cagaagtggcacaacagtgggccaggagcgagaaggtgcggctgtgggaggtgacagtca 12134926
Query: 576 cggaccggaaaactctgatcgagccgttcactctgttagccagcaaactctcccagcccc 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12134925 cggaccggaaaactctgatcgagccgttcactctgttagccagcaaactctcccagcccc 12134866
Query: 636 agagcaaatcaagcttccctctgcctgggaggaagaacaaagggaactccagctctgaga 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12134865 agagcaaatcaagcttccctctgcctgggaggaagaacaaagggaactccagctctgaga 12134806
Query: 696 actaaaaagtggaatgtcacaatcatttgctgaatagtgactgcctttaggtatctgtga 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12134805 actaaaaagtggaatgtcacaatcatttgctgaatagtgactgcctttaggtatctgtga 12134746
Query: 756 acaaacatatttaaaacaggacatgtctacctttggtctttagaaaatccctagggaatt 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12134745 acaaacatatttaaaacaggacatgtctacctttggtctttagaaaatccctagggaatt 12134686
Query: 816 aatttaatgcactttagctaattaagttattattgcctgatatgaaatactatactagca 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12134685 aatttaatgcactttagctaattaagttattattgcctgatatgaaatactatactagca 12134626
Query: 876 ttctcattgtttgaaacttgtccctgaaaccagcacctttgttacatttatgttgaact- 934
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12134625 ttctcattgtttgaaacttgtccctgaaaccagcacctttgttacatttatgttgaactt 12134566
Query: 935 ---tgtcaaaagaataaagtttgagtggtatg 963
|||||||||||||||||||||||||||||
Sbjct: 12134565 gtctgtcaaaagaataaagtttgagtggtatg 12134534
Score = 478 bits (241), Expect = e-132
Identities = 244/245 (99%)
Strand = Plus / Minus
Query: 215 ggaatggaagactgtgaaacaatggaagatgtgtatatggcctcagtggaaacggatcgt 274
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12148637 ggaatggaagactgtgaaacaatggaagatgtgtatatggcctcagtggaaacggatcgc 12148578
Query: 275 ggagtaaaggagcagttacatctttatgacaccagaggcctacaggagggtgtggagctg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12148577 ggagtaaaggagcagttacatctttatgacaccagaggcctacaggagggtgtggagctg 12148518
Query: 335 ccaaagcattatttttcatttgctgatggctttgttcttgtgtacagcgtgaataacctt 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12148517 ccaaagcattatttttcatttgctgatggctttgttcttgtgtacagcgtgaataacctt 12148458
Query: 395 gaatcctttcaaagagtagagcttctgaagaaagaaattgataagttcaaagacaaaaaa 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12148457 gaatcctttcaaagagtagagcttctgaagaaagaaattgataagttcaaagacaaaaaa 12148398
Query: 455 gaggt 459
|||||
Sbjct: 12148397 gaggt 12148393
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 102 cagtggtagcctaagagaagatgggaaagggctgtaaagttgtggtttgtggcttgttat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12156283 cagtggtagcctaagagaagatgggaaagggctgtaaagttgtggtttgtggcttgttat 12156224
Query: 162 ctgtgggaaaaacagcaattttggagcagctcctttatgggaatcatactgttgg 216
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12156223 ctgtgggaaaaacagcaattttggagcagctcctttatgggaatcatactgttgg 12156169
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 102 cagtggtagcctaagagaagatgggaaagggctgtaaagttgtggtttgtggcttgttat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12246734 cagtggtagcctaagagaagatgggaaagggctgtaaagttgtggtttgtggcttgttat 12246675
Query: 162 ctgtgggaaaaacagcaattttggagcagctcctttatgggaatcatactgttgg 216
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12246674 ctgtgggaaaaacagcaattttggagcagctcctttatgggaatcatactgttgg 12246620
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 2 agctgggggcggggctctcggggcgagtcttgcagtggggctgtgcagccgccgtggagc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12254991 agctgggggcggggctctcggggcgagtcttgcagtggggctgtgcagccgccgtggagc 12254932
Query: 62 ggtgcagttgcgctgctctcctcgggctcggaggggcgtgcag 104
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12254931 ggtgcagttgcgctgctctcctcgggctcggaggggcgtgcag 12254889
Score = 188 bits (95), Expect = 4e-45
Identities = 101/103 (98%)
Strand = Plus / Minus
Query: 2 agctgggggcggggctctcggggcgagtcttgcagtggggctgtgcagccgccgtggagc 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12164555 agctgggggcggggctctcggggcgagtcttgcagtggggctgtgcagccgccgtggagt 12164496
Query: 62 ggtgcagttgcgctgctctcctcgggctcggaggggcgtgcag 104
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12164495 ggtgcagtggcgctgctctcctcgggctcggaggggcgtgcag 12164453
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,660,628
Number of extensions: 269
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 6
Length of query: 978
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 957
Effective length of database: 2,808,413,156
Effective search space: 2687651390292
Effective search space used: 2687651390292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)