Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008994
(1002 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092342.1| probable imidazolonepropionase [Bos taurus]. 536 e-153
>ref|NP_001092342.1| probable imidazolonepropionase [Bos taurus].
Length = 426
Score = 536 bits (1382), Expect = e-153
Identities = 265/308 (86%), Positives = 289/308 (93%)
Frame = +1
Query: 58 MAGGHRLLLENARQVVAVCARGERFLAGDALHRLVVLEGASLVVGTDGFLKAIGPADAIR 237
MAGGHRLLLENARQVV VCARGERFL DAL L VLEGASLVVGTDGF+KAIGPADAI+
Sbjct: 1 MAGGHRLLLENARQVVLVCARGERFLTRDALRSLEVLEGASLVVGTDGFIKAIGPADAIQ 60
Query: 238 ELFAEDTFEERIDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYMEIHQAGGGIN 417
+ F+E+TFEERIDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYM+IHQAGGGIN
Sbjct: 61 KQFSEETFEERIDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYMDIHQAGGGIN 120
Query: 418 FTVERTRQASEEELFRSLQQRLGCMMRAGSTLVECKSGYGLSLETELKVLRVIERARREL 597
FTVERTRQASEEEL+ S QQRLGCMMRAG+TLVECKSGYGL+LETELK+LRVIERAR+EL
Sbjct: 121 FTVERTRQASEEELYSSFQQRLGCMMRAGTTLVECKSGYGLNLETELKMLRVIERARQEL 180
Query: 598 DIGISATYCGAHAVPKGKTAPEAADDIIHSHLPKLQELGRDGEIRVDNIDVFCEKGVFDR 777
DIGISATYCGAH+VPKGKTA EAADDII +HLP+L+ELGR+GEI VDNIDVFCEK VFD
Sbjct: 181 DIGISATYCGAHSVPKGKTASEAADDIIKNHLPRLKELGRNGEIHVDNIDVFCEKDVFDL 240
Query: 778 EATRRILQSGKDMGLQINFHGDELHPMKAAELGAKLGAQAVSHLEEVSDEGIAAMXTARC 957
++TRRILQSGKD+GLQINFHGDELHPMKAAELG +LGAQA+SHLEEVSDEGIAAM +ARC
Sbjct: 241 DSTRRILQSGKDIGLQINFHGDELHPMKAAELGVELGAQAISHLEEVSDEGIAAMASARC 300
Query: 958 AXILLXHT 981
+ +LL T
Sbjct: 301 SAVLLPTT 308
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,109,835
Number of extensions: 980989
Number of successful extensions: 4109
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4095
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,273,310
Effective search space: 3297134610
Effective search space used: 3297134610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008994
(1002 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532656.2| PREDICTED: similar to T12A2.1 [Canis familiaris]. 451 e-127
>ref|XP_532656.2| PREDICTED: similar to T12A2.1 [Canis familiaris].
Length = 435
Score = 451 bits (1159), Expect = e-127
Identities = 224/267 (83%), Positives = 244/267 (91%)
Frame = +1
Query: 181 LVVGTDGFLKAIGPADAIRELFAEDTFEERIDCSGKCILPGLVDAHTHPVWAGERVHEFA 360
+V G DGF+KAIGPADAI++LF+E+TFEERIDCSGKCILPGLVDAHTHPVWAGERVHEFA
Sbjct: 45 MVWGWDGFIKAIGPADAIQKLFSEETFEERIDCSGKCILPGLVDAHTHPVWAGERVHEFA 104
Query: 361 MKLAGATYMEIHQAGGGINFTVERTRQASEEELFRSLQQRLGCMMRAGSTLVECKSGYGL 540
MKLAGATYM+IHQAGGGINFTVE TRQASEEELF SL+ RL M+RAG+TL ECKSGYGL
Sbjct: 105 MKLAGATYMDIHQAGGGINFTVEHTRQASEEELFGSLRGRLQSMVRAGTTLAECKSGYGL 164
Query: 541 SLETELKVLRVIERARRELDIGISATYCGAHAVPKGKTAPEAADDIIHSHLPKLQELGRD 720
L+TELK+LRVIERARR+L IGISATYCGAH+VPKGKTA EAAD+II+SHLPKL ELG
Sbjct: 165 DLQTELKMLRVIERARRQLPIGISATYCGAHSVPKGKTAVEAADEIINSHLPKLMELGAS 224
Query: 721 GEIRVDNIDVFCEKGVFDREATRRILQSGKDMGLQINFHGDELHPMKAAELGAKLGAQAV 900
GEI VDNIDVFCEKGVFD +TRRILQSGK+MGLQINFHGDELHPMKAAELGA+LGA AV
Sbjct: 225 GEIHVDNIDVFCEKGVFDLNSTRRILQSGKEMGLQINFHGDELHPMKAAELGAELGALAV 284
Query: 901 SHLEEVSDEGIAAMXTARCAXILLXHT 981
SHLEE SDEGIAAM TARC+ ILL T
Sbjct: 285 SHLEEASDEGIAAMATARCSAILLPTT 311
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,710,453
Number of extensions: 1005350
Number of successful extensions: 4324
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4311
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 231
Effective length of database: 15,440,896
Effective search space: 3566846976
Effective search space used: 3566846976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008994
(1002 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925019.3| PREDICTED: probable imidazolonepropionase [S... 589 e-169
>ref|XP_001925019.3| PREDICTED: probable imidazolonepropionase [Sus scrofa].
Length = 427
Score = 589 bits (1518), Expect = e-169
Identities = 298/308 (96%), Positives = 301/308 (97%)
Frame = +1
Query: 58 MAGGHRLLLENARQVVAVCARGERFLAGDALHRLVVLEGASLVVGTDGFLKAIGPADAIR 237
MAGGHRLLLENARQVVAVCARGERFLA DALHRLVVLEGASLVVGTDGFLKAIGPADAIR
Sbjct: 1 MAGGHRLLLENARQVVAVCARGERFLARDALHRLVVLEGASLVVGTDGFLKAIGPADAIR 60
Query: 238 ELFAEDTFEERIDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYMEIHQAGGGIN 417
ELFAEDTFEERIDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYMEIHQAGGGIN
Sbjct: 61 ELFAEDTFEERIDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYMEIHQAGGGIN 120
Query: 418 FTVERTRQASEEELFRSLQQRLGCMMRAGSTLVECKSGYGLSLETELKVLRVIERARREL 597
FTVERTRQASEEELFRSLQQRLGCMMRAGSTLVECKSGYGLSLETELK+LRVIERARREL
Sbjct: 121 FTVERTRQASEEELFRSLQQRLGCMMRAGSTLVECKSGYGLSLETELKMLRVIERARREL 180
Query: 598 DIGISATYCGAHAVPKGKTAPEAADDIIHSHLPKLQELGRDGEIRVDNIDVFCEKGVFDR 777
DIGISATYCGAHAVPKGKTAPEAADDIIHSHLPKLQELGRDGEIRVDNIDVFCEKGVFD
Sbjct: 181 DIGISATYCGAHAVPKGKTAPEAADDIIHSHLPKLQELGRDGEIRVDNIDVFCEKGVFDL 240
Query: 778 EATRRILQSGKDMGLQINFHGDELHPMKAAELGAKLGAQAVSHLEEVSDEGIAAMXTARC 957
EATRRILQSGKD GLQINFHGDEL+PMKAAELGA+LGAQAVSHLEEVSDEGIAAM TARC
Sbjct: 241 EATRRILQSGKDAGLQINFHGDELYPMKAAELGAELGAQAVSHLEEVSDEGIAAMATARC 300
Query: 958 AXILLXHT 981
A ILL T
Sbjct: 301 AAILLPTT 308
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,946,844
Number of extensions: 631513
Number of successful extensions: 2551
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2550
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,879,129
Effective search space: 2086595315
Effective search space used: 2086595315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008994
(1002 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082184.1| probable imidazolonepropionase [Mus musculus]. 503 e-143
>ref|NP_082184.1| probable imidazolonepropionase [Mus musculus].
Length = 426
Score = 503 bits (1296), Expect = e-143
Identities = 247/308 (80%), Positives = 274/308 (88%)
Frame = +1
Query: 58 MAGGHRLLLENARQVVAVCARGERFLAGDALHRLVVLEGASLVVGTDGFLKAIGPADAIR 237
M HRLLLENA+QVV VCARGERFL G AL L VLEGAS+VVGTDG +KA+GPA I+
Sbjct: 1 MTSSHRLLLENAQQVVLVCARGERFLTGSALRSLAVLEGASVVVGTDGLIKAVGPAAVIQ 60
Query: 238 ELFAEDTFEERIDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYMEIHQAGGGIN 417
+ F+ +TFEERIDCSGKC+LPGLVDAHTHPVWAGERVHEFAMKLAGATYM+IHQAGGGIN
Sbjct: 61 KQFSGETFEERIDCSGKCVLPGLVDAHTHPVWAGERVHEFAMKLAGATYMDIHQAGGGIN 120
Query: 418 FTVERTRQASEEELFRSLQQRLGCMMRAGSTLVECKSGYGLSLETELKVLRVIERARREL 597
FTVE TRQASEEELF S QQRL CMMRAG+TLVECKSGYGL+LETELK+LRVIERARREL
Sbjct: 121 FTVEHTRQASEEELFCSFQQRLQCMMRAGTTLVECKSGYGLNLETELKMLRVIERARREL 180
Query: 598 DIGISATYCGAHAVPKGKTAPEAADDIIHSHLPKLQELGRDGEIRVDNIDVFCEKGVFDR 777
+ +SATYCGAH+VPKGKTA EAADDII HLP+L+EL R+G++ VDNIDVFCEKGVFD
Sbjct: 181 HLSLSATYCGAHSVPKGKTAVEAADDIISHHLPRLKELSRNGDLHVDNIDVFCEKGVFDL 240
Query: 778 EATRRILQSGKDMGLQINFHGDELHPMKAAELGAKLGAQAVSHLEEVSDEGIAAMXTARC 957
+ TRRIL+ GK MGLQINFHGDELHPMKAAELGA+LGAQA+SHLEEVSDEGIAAM ARC
Sbjct: 241 DTTRRILEGGKKMGLQINFHGDELHPMKAAELGAELGAQAISHLEEVSDEGIAAMAAARC 300
Query: 958 AXILLXHT 981
+ +LL T
Sbjct: 301 SAVLLPTT 308
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,049,002
Number of extensions: 827585
Number of successful extensions: 3296
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3292
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 232
Effective length of database: 12,553,887
Effective search space: 2912501784
Effective search space used: 2912501784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008994
(1002 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689648.2| probable imidazolonepropionase [Homo sapiens]. 528 e-150
>ref|NP_689648.2| probable imidazolonepropionase [Homo sapiens].
Length = 426
Score = 528 bits (1361), Expect = e-150
Identities = 264/308 (85%), Positives = 284/308 (92%)
Frame = +1
Query: 58 MAGGHRLLLENARQVVAVCARGERFLAGDALHRLVVLEGASLVVGTDGFLKAIGPADAIR 237
MA GH LLLENA+QVV VCARGERFLA DAL L VLEGASLVVG DGF+KAIGPAD I+
Sbjct: 1 MASGHSLLLENAQQVVLVCARGERFLARDALRSLAVLEGASLVVGKDGFIKAIGPADVIQ 60
Query: 238 ELFAEDTFEERIDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYMEIHQAGGGIN 417
F+ +TFEE IDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYMEIHQAGGGI+
Sbjct: 61 RQFSGETFEEIIDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYMEIHQAGGGIH 120
Query: 418 FTVERTRQASEEELFRSLQQRLGCMMRAGSTLVECKSGYGLSLETELKVLRVIERARREL 597
FTVERTRQA+EEELFRSLQQRL CMMRAG+TLVECKSGYGL LETELK+LRVIERARREL
Sbjct: 121 FTVERTRQATEEELFRSLQQRLQCMMRAGTTLVECKSGYGLDLETELKMLRVIERARREL 180
Query: 598 DIGISATYCGAHAVPKGKTAPEAADDIIHSHLPKLQELGRDGEIRVDNIDVFCEKGVFDR 777
DIGISATYCGAH+VPKGKTA EAADDII++HLPKL+ELGR+GEI VDNIDVFCEKGVFD
Sbjct: 181 DIGISATYCGAHSVPKGKTATEAADDIINNHLPKLKELGRNGEIHVDNIDVFCEKGVFDL 240
Query: 778 EATRRILQSGKDMGLQINFHGDELHPMKAAELGAKLGAQAVSHLEEVSDEGIAAMXTARC 957
++TRRILQ GKD+GLQINFHGDELHPMKAAELGA+LGAQA+SHLEEVSDEGI AM TARC
Sbjct: 241 DSTRRILQRGKDIGLQINFHGDELHPMKAAELGAELGAQAISHLEEVSDEGIVAMATARC 300
Query: 958 AXILLXHT 981
+ ILL T
Sbjct: 301 SAILLPTT 308
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,948,908
Number of extensions: 987952
Number of successful extensions: 4086
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4078
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,901,872
Effective search space: 3442332432
Effective search space used: 3442332432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008994
(1002 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 539 e-151
>Sscrofa_Chr05
|| Length = 111506441
Score = 539 bits (272), Expect = e-151
Identities = 278/280 (99%)
Strand = Plus / Minus
Query: 365 agttggcaggagccacgtacatggaaatccaccaggctggaggagggatcaatttcaccg 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 91765915 agttggcaggagccacgtacatggaaatccaccaggctggaggagggatcaatttcacgg 91765856
Query: 425 tggagcgcacgcgccaggcctcggaggaggagctgttccgctccctgcagcagcggctgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91765855 tggagcgcacgcgccaggcctcggaggaggagctgttccgctccctgcagcagcggctgg 91765796
Query: 485 ggtgcatgatgagggcggggagcacgctggtggagtgcaagagcggctacggcctcagcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91765795 ggtgcatgatgagggcggggagcacgctggtggagtgcaagagcggctacggcctcagcc 91765736
Query: 545 tggagacggagctcaaggtgctgcgcgtgattgagcgcgcccggcgggagctggacatcg 604
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91765735 tggagacggagctcaagatgctgcgcgtgattgagcgcgcccggcgggagctggacatcg 91765676
Query: 605 gcatctcggccacgtactgcggggcccacgcagtgccaaa 644
||||||||||||||||||||||||||||||||||||||||
Sbjct: 91765675 gcatctcggccacgtactgcggggcccacgcagtgccaaa 91765636
Score = 392 bits (198), Expect = e-106
Identities = 219/226 (96%)
Strand = Plus / Minus
Query: 645 aggaaaaactgctcctgaagctgctgatgacatcatccacagccacctcccaaagctgca 704
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 91763108 aggaaaaactgctcctgaagctgctgatgacatcatccacagccatctcccaaagctgca 91763049
Query: 705 ggaacttgggagagacggagaaatacgcgttgacaacatagatgtgttctgtgagaaagg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91763048 ggaacttgggagagacggagaaatacgcgttgacaacatagatgtgttctgtgagaaagg 91762989
Query: 765 ggtcttcgatcgcgaggccaccagaaggatcctgcaaagtgggaaagacatggggctgca 824
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 91762988 ggtcttcgatctcgaggccaccagaaggatcctgcaaagtgggaaagatgcggggctgca 91762929
Query: 825 gattaactttcacggggacgagctccacccaatgaaggcagccgag 870
||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 91762928 gattaactttcacggggacgagctctacccaatgaaggcggccgag 91762883
Score = 355 bits (179), Expect = 3e-95
Identities = 191/195 (97%)
Strand = Plus / Minus
Query: 1 cttctacgcggccgcggccggagccccgcagcctcgagacccgctgtgctcggcgacatg 60
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 91772306 cttctacgcggccgcggccggagcccggcagcttcgagacccgctgtgctcggcgacatg 91772247
Query: 61 gccggcggccaccgcctcctgctggagaacgcgcggcaagtggtggcggtgtgcgcccgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91772246 gccggcggccaccgcctcctgctggagaacgcgcggcaagtggtggcggtgtgcgcccgg 91772187
Query: 121 ggcgagcgcttcctggcgggggacgcgctgcacagactggtagtgctggaaggcgccagc 180
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 91772186 ggcgagcgcttcctggcgcgggacgcgctgcacagactggtagtgctggagggcgccagc 91772127
Query: 181 ctggtggtgggcacg 195
|||||||||||||||
Sbjct: 91772126 ctggtggtgggcacg 91772112
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 195 ggatgggttcctaaaagccattggtcccgccgatgccatccgagaactgtttgcggaaga 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91770421 ggatgggttcctaaaagccattggtcccgccgatgccatccgagaactgtttgcggaaga 91770362
Query: 255 cacattcgaagagagaattgactgttctgggaaatgcatcttgccaggt 303
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91770361 cacattcgaagagagaattgactgttctgggaaatgcatcttgccaggt 91770313
Score = 163 bits (82), Expect = 2e-37
Identities = 98/104 (94%)
Strand = Plus / Minus
Query: 869 agctcggggcgaaactgggagcgcaggcagtcagtcaccttgaagaagtgagtgatgagg 928
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91760312 agctcggggcggaactgggagcgcaggcagtcagtcaccttgaagaagtgagtgatgagg 91760253
Query: 929 gcatcgctgccatggncacagcccgatgcgctngcatcctcctg 972
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Sbjct: 91760252 gcatcgctgccatggcaacagcccgatgtgctgccatcctcctg 91760209
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 299 caggtctcgtggatgcacacacacatccagtgtgggctggagaaagagttcacgagttcg 358
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Sbjct: 91768846 caggtctcgtggatgcacacacacatccagtgtgggctggagaaagagttcacgagttcg 91768787
Query: 359 ccatgaag 366
||||||||
Sbjct: 91768786 ccatgaag 91768779
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,866,106
Number of extensions: 140
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 6
Length of query: 1002
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 981
Effective length of database: 2,808,413,156
Effective search space: 2755053306036
Effective search space used: 2755053306036
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)