Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009018
(1232 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094526.1| casein kinase I isoform gamma-2 [Bos taurus]. 531 e-151
Alignment gi|NP_001098799.2| casein kinase I isoform gamma-3 [Bos taurus]. 447 e-126
Alignment gi|NP_001033235.1| casein kinase I isoform gamma-1 [Bos taurus]. 393 e-109
Alignment gi|NP_001095550.1| casein kinase 1, delta [Bos taurus]. 259 4e-69
Alignment gi|NP_001071577.1| casein kinase 1 epsilon [Bos taurus]. 251 7e-67
Alignment gi|XP_002699872.1| PREDICTED: casein kinase I-like [Bos taurus]. 242 6e-64
Alignment gi|XP_002707254.1| PREDICTED: casein kinase I-like [Bos taurus]. 242 6e-64
Alignment gi|NP_777136.1| casein kinase I isoform alpha [Bos taurus]. 236 3e-62
Alignment gi|XP_002689948.1| PREDICTED: casein kinase I alpha-like [Bos t... 229 5e-60
Alignment gi|XP_002700117.1| PREDICTED: casein kinase I-like [Bos taurus]. 228 6e-60
>ref|NP_001094526.1| casein kinase I isoform gamma-2 [Bos taurus].
Length = 414
Score = 531 bits (1369), Expect = e-151
Identities = 260/277 (93%), Positives = 263/277 (94%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP
Sbjct: 138 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 197
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 198 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 257
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 258 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 317
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
SGFVFDYEYDWAGKPLPTPIGT H+DLP+QPQ REKALL+SKNQALNSTNGELNADDPTA
Sbjct: 318 SGFVFDYEYDWAGKPLPTPIGTAHSDLPAQPQVREKALLYSKNQALNSTNGELNADDPTA 377
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
GHSNAPITAPAEVEVADDT SLQRHK
Sbjct: 378 GHSNAPITAPAEVEVADDTKCCCFFKRRKRKSLQRHK 414
>ref|NP_001098799.2| casein kinase I isoform gamma-3 [Bos taurus].
Length = 422
Score = 447 bits (1151), Expect = e-126
Identities = 221/262 (84%), Positives = 235/262 (89%), Gaps = 3/262 (1%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLI+RMEYVH+K+LIYRDVKPENFL+GRPG K Q IHIIDFGLAKEYIDP
Sbjct: 136 LKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDP 195
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 196 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 255
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FP EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 256 TLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 314
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTD--LPSQPQAR-EKALLHSKNQALNSTNGELNADD 713
G++FDYEYDW GK LPTP+G V D L S +A + + SKNQ ++STNGELN DD
Sbjct: 315 KGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHPHRDKIQSKNQVVSSTNGELNTDD 374
Query: 714 PTAGHSNAPITAPAEVEVADDT 779
PTAG SNAPITAP EVEV D+T
Sbjct: 375 PTAGRSNAPITAPTEVEVMDET 396
>ref|NP_001033235.1| casein kinase I isoform gamma-1 [Bos taurus].
Length = 437
Score = 393 bits (1010), Expect = e-109
Identities = 192/261 (73%), Positives = 216/261 (82%), Gaps = 10/261 (3%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQL++RMEYVH+K+LIYRDVKPENFL+GR G K++H IHIIDFGLAKEYIDP
Sbjct: 137 LKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAKEYIDP 196
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 197 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 256
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKR TP+EVLCE+FPEEMATYLRYVRRLDFFEKPDY+YLR LFTDLF+R
Sbjct: 257 TLKERYQKIGDTKRNTPVEVLCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFER 316
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQARE---------KALLHSKNQALNSTNG 695
G+ FDY YDW G+P+PTP+G+VH D + RE + L ++ + L
Sbjct: 317 KGYTFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQPLRNQIRKLRHRKS 376
Query: 696 ELNADDPTAGHS-NAPITAPA 755
E A PTA + N+ + PA
Sbjct: 377 EDLAQGPTATKTFNSRVVCPA 397
>ref|NP_001095550.1| casein kinase 1, delta [Bos taurus].
Length = 409
Score = 259 bits (661), Expect = 4e-69
Identities = 127/225 (56%), Positives = 168/225 (74%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 102 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 159
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 219
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + K +TPIEVLC+ +P E ATYL + R L F +KPDY YLR+LF +LF R
Sbjct: 220 TKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQA 677
GF +DY +DW L D + + RE+ L HS+N A
Sbjct: 280 QGFSYDYVFDW--NMLKFGASRAADDAERERRDREERLRHSRNPA 322
>ref|NP_001071577.1| casein kinase 1 epsilon [Bos taurus].
Length = 466
Score = 251 bits (642), Expect = 7e-67
Identities = 117/191 (61%), Positives = 155/191 (81%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 102 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 159
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 219
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + K +TPIEVLC+ +P E +TYL + R L F +KPDY YLR+LF +LF R
Sbjct: 220 TKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
Query: 543 SGFVFDYEYDW 575
GF +DY +DW
Sbjct: 280 QGFSYDYVFDW 290
>ref|XP_002699872.1| PREDICTED: casein kinase I-like [Bos taurus].
Length = 333
Score = 242 bits (617), Expect = 6e-64
Identities = 113/191 (59%), Positives = 146/191 (76%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
+KTVLM+A Q+I+R+EY+HTK I+RD+KP+NFL+G Q + ++DFGLAK Y D
Sbjct: 110 MKTVLMLADQMISRIEYLHTKDFIHRDIKPDNFLMGAGSHCNQ--LFLVDFGLAKRYRDS 167
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
+TK+HIPY+E KSLTGTARY S+N+HLG EQSRRDD+E+LG++ MYF R SLPWQG+K
Sbjct: 168 KTKQHIPYKEKKSLTGTARYASLNSHLGIEQSRRDDMESLGYVLMYFNRSSLPWQGIKTA 227
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T+K++Y+KI ++K ATPIE LC FP E ATYL Y R L F E PDY YLR+LF LF
Sbjct: 228 TMKQKYEKICESKMATPIEALCNGFPSEFATYLNYCRGLRFEEAPDYTYLRQLFRSLFRT 287
Query: 543 SGFVFDYEYDW 575
+ +DY +DW
Sbjct: 288 LNYQYDYAFDW 298
>ref|XP_002707254.1| PREDICTED: casein kinase I-like [Bos taurus].
Length = 333
Score = 242 bits (617), Expect = 6e-64
Identities = 113/191 (59%), Positives = 146/191 (76%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
+KTVLM+A Q+I+R+EY+HTK I+RD+KP+NFL+G Q + ++DFGLAK Y D
Sbjct: 110 MKTVLMLADQMISRIEYLHTKDFIHRDIKPDNFLMGAGSHCNQ--LFLVDFGLAKRYRDS 167
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
+TK+HIPY+E KSLTGTARY S+N+HLG EQSRRDD+E+LG++ MYF R SLPWQG+K
Sbjct: 168 KTKQHIPYKEKKSLTGTARYASLNSHLGIEQSRRDDMESLGYVLMYFNRSSLPWQGIKTA 227
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T+K++Y+KI ++K ATPIE LC FP E ATYL Y R L F E PDY YLR+LF LF
Sbjct: 228 TMKQKYEKICESKMATPIEALCNGFPSEFATYLNYCRGLRFEEAPDYTYLRQLFRSLFRT 287
Query: 543 SGFVFDYEYDW 575
+ +DY +DW
Sbjct: 288 LNYQYDYAFDW 298
>ref|NP_777136.1| casein kinase I isoform alpha [Bos taurus].
Length = 325
Score = 236 bits (602), Expect = 3e-62
Identities = 114/191 (59%), Positives = 146/191 (76%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
+KTVLM+A Q+I+R+EYVHTK+ I+RD+KP+NFL+G + + + +IDFGLAK+Y D
Sbjct: 110 MKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIG--RHCNKLFLIDFGLAKKYRDN 167
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T++HIPYRE K+LTGTARY SIN HLG EQSRRDD+E+LG++ MYF R SLPWQGLKA
Sbjct: 168 RTRQHIPYREDKNLTGTARYASINAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAA 227
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T K++Y+KI + K +TP+EVLC+ FP E A YL Y R L F E PDY YLR+LF LF
Sbjct: 228 TKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 287
Query: 543 SGFVFDYEYDW 575
+DY +DW
Sbjct: 288 LNHQYDYTFDW 298
>ref|XP_002689948.1| PREDICTED: casein kinase I alpha-like [Bos taurus].
Length = 325
Score = 229 bits (583), Expect = 5e-60
Identities = 112/191 (58%), Positives = 143/191 (74%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
+KTVLM+A Q++ R+EYVHTK+ I+RD+KP+NFL+G + + + +IDFGLAK+Y D
Sbjct: 110 MKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIG--RHCNKLFLIDFGLAKKYRDN 167
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T++HIPYRE K+LTGTARY SI+ HLG EQSRRDD+E+LG++ MYF R SLPWQGLKA
Sbjct: 168 RTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAA 227
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T K++Y+KI + K +TP+EVLC+ FP E A YL Y R L F E PDY YLR LF LF
Sbjct: 228 TKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRT 287
Query: 543 SGFVFDYEYDW 575
+DY DW
Sbjct: 288 LNHQYDYTSDW 298
>ref|XP_002700117.1| PREDICTED: casein kinase I-like [Bos taurus].
Length = 336
Score = 228 bits (582), Expect = 6e-60
Identities = 107/191 (56%), Positives = 146/191 (76%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
+KTVLM+A Q+I+R+EYVHT++LI+RD+KPENFL+G ++ + +IDFGLAK+Y D
Sbjct: 110 MKTVLMLADQMISRIEYVHTQNLIHRDIKPENFLMGTGQQWKE--LFLIDFGLAKKYRDN 167
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYR KSLTGT + SI+ H+G EQSRRDD+E++GH+ MYF RGSLPWQGLKA
Sbjct: 168 RTGQHIPYRSGKSLTGTPSFASISAHIGIEQSRRDDMESIGHVLMYFNRGSLPWQGLKAA 227
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T+K++ ++I + K TP++VLC+ FP E A YL++ R L F E PDY YLR+LF LF +
Sbjct: 228 TMKQKCEQISEMKMTTPVDVLCKGFPAEFAMYLKHCRGLSFEEAPDYRYLRQLFHMLFRK 287
Query: 543 SGFVFDYEYDW 575
+ +DY +DW
Sbjct: 288 LNYQYDYAFDW 298
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,843,791
Number of extensions: 1366879
Number of successful extensions: 7885
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 7750
Number of HSP's successfully gapped: 48
Length of query: 410
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,207,134
Effective search space: 4333175870
Effective search space used: 4333175870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009018
(1232 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_868572.1| PREDICTED: similar to Casein kinase I, gamma 2 ... 511 e-145
Alignment gi|XP_868570.1| PREDICTED: similar to Casein kinase I, gamma 2 ... 511 e-145
Alignment gi|XP_868567.1| PREDICTED: similar to Casein kinase I, gamma 2 ... 511 e-145
Alignment gi|XP_533957.2| PREDICTED: similar to Casein kinase I, gamma 2 ... 511 e-145
Alignment gi|XP_868566.1| PREDICTED: similar to Casein kinase I, gamma 2 ... 489 e-138
Alignment gi|XP_859678.1| PREDICTED: similar to casein kinase 1, gamma 3 ... 459 e-129
Alignment gi|XP_538602.2| PREDICTED: similar to casein kinase 1, gamma 3 ... 459 e-129
Alignment gi|XP_865667.1| PREDICTED: similar to Casein kinase I, gamma 1 ... 451 e-127
Alignment gi|XP_859708.1| PREDICTED: similar to casein kinase 1, gamma 3 ... 451 e-127
Alignment gi|XP_859840.1| PREDICTED: similar to casein kinase 1, gamma 3 ... 445 e-125
>ref|XP_868572.1| PREDICTED: similar to Casein kinase I, gamma 2 isoform (CKI-gamma
2) isoform 7 [Canis familiaris].
Length = 433
Score = 511 bits (1317), Expect = e-145
Identities = 252/277 (90%), Positives = 258/277 (93%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP
Sbjct: 157 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 216
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 217 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 276
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCESFPEEMATYL Y+R LDFFEKP YDYLRKLFTDLF+R
Sbjct: 277 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLLYMRCLDFFEKPYYDYLRKLFTDLFNR 336
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
S F+F YEYDWAGKPLPTPIGTVHTDLPSQPQ R+KA LHSKNQALNSTNGELNADDPTA
Sbjct: 337 SVFLFYYEYDWAGKPLPTPIGTVHTDLPSQPQPRDKAQLHSKNQALNSTNGELNADDPTA 396
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
GHSNAPITAPAEVEVADDT ++QRHK
Sbjct: 397 GHSNAPITAPAEVEVADDTKCCCFFKRRKRKAVQRHK 433
>ref|XP_868570.1| PREDICTED: similar to Casein kinase I, gamma 2 isoform (CKI-gamma
2) isoform 6 [Canis familiaris].
Length = 377
Score = 511 bits (1317), Expect = e-145
Identities = 252/277 (90%), Positives = 258/277 (93%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP
Sbjct: 101 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 160
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 161 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 220
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCESFPEEMATYL Y+R LDFFEKP YDYLRKLFTDLF+R
Sbjct: 221 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLLYMRCLDFFEKPYYDYLRKLFTDLFNR 280
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
S F+F YEYDWAGKPLPTPIGTVHTDLPSQPQ R+KA LHSKNQALNSTNGELNADDPTA
Sbjct: 281 SVFLFYYEYDWAGKPLPTPIGTVHTDLPSQPQPRDKAQLHSKNQALNSTNGELNADDPTA 340
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
GHSNAPITAPAEVEVADDT ++QRHK
Sbjct: 341 GHSNAPITAPAEVEVADDTKCCCFFKRRKRKAVQRHK 377
>ref|XP_868567.1| PREDICTED: similar to Casein kinase I, gamma 2 isoform (CKI-gamma
2) isoform 5 [Canis familiaris].
Length = 406
Score = 511 bits (1317), Expect = e-145
Identities = 252/277 (90%), Positives = 258/277 (93%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP
Sbjct: 130 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 189
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 190 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 249
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCESFPEEMATYL Y+R LDFFEKP YDYLRKLFTDLF+R
Sbjct: 250 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLLYMRCLDFFEKPYYDYLRKLFTDLFNR 309
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
S F+F YEYDWAGKPLPTPIGTVHTDLPSQPQ R+KA LHSKNQALNSTNGELNADDPTA
Sbjct: 310 SVFLFYYEYDWAGKPLPTPIGTVHTDLPSQPQPRDKAQLHSKNQALNSTNGELNADDPTA 369
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
GHSNAPITAPAEVEVADDT ++QRHK
Sbjct: 370 GHSNAPITAPAEVEVADDTKCCCFFKRRKRKAVQRHK 406
>ref|XP_533957.2| PREDICTED: similar to Casein kinase I, gamma 2 isoform (CKI-gamma
2) isoform 1 [Canis familiaris].
Length = 414
Score = 511 bits (1317), Expect = e-145
Identities = 252/277 (90%), Positives = 258/277 (93%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP
Sbjct: 138 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 197
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 198 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 257
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCESFPEEMATYL Y+R LDFFEKP YDYLRKLFTDLF+R
Sbjct: 258 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLLYMRCLDFFEKPYYDYLRKLFTDLFNR 317
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
S F+F YEYDWAGKPLPTPIGTVHTDLPSQPQ R+KA LHSKNQALNSTNGELNADDPTA
Sbjct: 318 SVFLFYYEYDWAGKPLPTPIGTVHTDLPSQPQPRDKAQLHSKNQALNSTNGELNADDPTA 377
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
GHSNAPITAPAEVEVADDT ++QRHK
Sbjct: 378 GHSNAPITAPAEVEVADDTKCCCFFKRRKRKAVQRHK 414
>ref|XP_868566.1| PREDICTED: similar to Casein kinase I, gamma 2 isoform (CKI-gamma
2) isoform 4 [Canis familiaris].
Length = 409
Score = 489 bits (1260), Expect = e-138
Identities = 244/277 (88%), Positives = 251/277 (90%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP
Sbjct: 138 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 197
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGK + R ALGHMFMYFLRGSLPWQGLKAD
Sbjct: 198 ETKKHIPYREHKSLTGTARYMSINTHLGKGEPR-----ALGHMFMYFLRGSLPWQGLKAD 252
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCESFPEEMATYL Y+R LDFFEKP YDYLRKLFTDLF+R
Sbjct: 253 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLLYMRCLDFFEKPYYDYLRKLFTDLFNR 312
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
S F+F YEYDWAGKPLPTPIGTVHTDLPSQPQ R+KA LHSKNQALNSTNGELNADDPTA
Sbjct: 313 SVFLFYYEYDWAGKPLPTPIGTVHTDLPSQPQPRDKAQLHSKNQALNSTNGELNADDPTA 372
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
GHSNAPITAPAEVEVADDT ++QRHK
Sbjct: 373 GHSNAPITAPAEVEVADDTKCCCFFKRRKRKAVQRHK 409
>ref|XP_859678.1| PREDICTED: similar to casein kinase 1, gamma 3 isoform 4 [Canis
familiaris].
Length = 379
Score = 459 bits (1181), Expect = e-129
Identities = 226/281 (80%), Positives = 242/281 (86%), Gaps = 4/281 (1%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLI+RMEYVH+K+LIYRDVKPENFL+GRPG K Q IHIIDFGLAKEYIDP
Sbjct: 99 LKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDP 158
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 159 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 218
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 219 TLKERYQKIGDTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 278
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTD--LPSQPQARE--KALLHSKNQALNSTNGELNAD 710
G++FDYEYDW GK LPTP+G V D L S +A + + SKNQ ++STNGELN D
Sbjct: 279 KGYLFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSKNQVVSSTNGELNTD 338
Query: 711 DPTAGHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
DPTAG SNAPITAP EVEV D+T ++QRHK
Sbjct: 339 DPTAGRSNAPITAPTEVEVMDETKCCCFFKRRKRKTIQRHK 379
>ref|XP_538602.2| PREDICTED: similar to casein kinase 1, gamma 3 isoform 1 [Canis
familiaris].
Length = 416
Score = 459 bits (1181), Expect = e-129
Identities = 226/281 (80%), Positives = 242/281 (86%), Gaps = 4/281 (1%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLI+RMEYVH+K+LIYRDVKPENFL+GRPG K Q IHIIDFGLAKEYIDP
Sbjct: 136 LKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDP 195
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 196 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 255
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 256 TLKERYQKIGDTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 315
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTD--LPSQPQARE--KALLHSKNQALNSTNGELNAD 710
G++FDYEYDW GK LPTP+G V D L S +A + + SKNQ ++STNGELN D
Sbjct: 316 KGYLFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSKNQVVSSTNGELNTD 375
Query: 711 DPTAGHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
DPTAG SNAPITAP EVEV D+T ++QRHK
Sbjct: 376 DPTAGRSNAPITAPTEVEVMDETKCCCFFKRRKRKTIQRHK 416
>ref|XP_865667.1| PREDICTED: similar to Casein kinase I, gamma 1 isoform (CKI-gamma
1) isoform 4 [Canis familiaris].
Length = 414
Score = 451 bits (1160), Expect = e-127
Identities = 213/277 (76%), Positives = 236/277 (85%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQL++RMEYVH+K+LIYRDVKPENFL+GR G K++H IHIIDFGLAKEYIDP
Sbjct: 138 LKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAKEYIDP 197
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 198 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 257
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKR TPIE LCE+FPEEMATYLRYVRRLDFFEKPDY+YLR LFTDLF+R
Sbjct: 258 TLKERYQKIGDTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFER 317
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
G+ FDY YDW G+P+PTP+G+VH D QP+ R ++KN ++STNGELN DDPT
Sbjct: 318 KGYTFDYAYDWVGRPIPTPVGSVHVDSAGQPRWRSSLAPYTKNSVVSSTNGELNVDDPTG 377
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
HSNAPITA AEVEV ++ + QRHK
Sbjct: 378 AHSNAPITAHAEVEVVEEAKCCCFFKRKRKKTAQRHK 414
>ref|XP_859708.1| PREDICTED: similar to casein kinase 1, gamma 3 isoform 5 [Canis
familiaris].
Length = 410
Score = 451 bits (1159), Expect = e-127
Identities = 222/277 (80%), Positives = 236/277 (85%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLI+RMEYVH+K+LIYRDVKPENFL+GRPG K Q IHIIDFGLAKEYIDP
Sbjct: 136 LKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDP 195
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 196 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 255
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 256 TLKERYQKIGDTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 315
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
G++FDYEYDW GK LPTP+G V Q + L + Q L+STNGELN DDPTA
Sbjct: 316 KGYLFDYEYDWIGKQLPTPVGAVQHG--GSVQVAKLIPLCLRAQTLDSTNGELNTDDPTA 373
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
G SNAPITAP EVEV D+T ++QRHK
Sbjct: 374 GRSNAPITAPTEVEVMDETKCCCFFKRRKRKTIQRHK 410
>ref|XP_859840.1| PREDICTED: similar to casein kinase 1, gamma 3 isoform 8 [Canis
familiaris].
Length = 441
Score = 445 bits (1145), Expect = e-125
Identities = 226/306 (73%), Positives = 242/306 (79%), Gaps = 29/306 (9%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLI+RMEYVH+K+LIYRDVKPENFL+GRPG K Q IHIIDFGLAKEYIDP
Sbjct: 136 LKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDP 195
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 196 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 255
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 256 TLKERYQKIGDTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 315
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTD--LPSQPQARE--KALLHSKN------------- 671
G++FDYEYDW GK LPTP+G V D L S +A + + SKN
Sbjct: 316 KGYLFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSKNQYYWPSIGRPQGS 375
Query: 672 ------------QALNSTNGELNADDPTAGHSNAPITAPAEVEVADDTXXXXXXXXXXXX 815
Q ++STNGELN DDPTAG SNAPITAP EVEV D+T
Sbjct: 376 LGLPADRHGGSVQVVSSTNGELNTDDPTAGRSNAPITAPTEVEVMDETKCCCFFKRRKRK 435
Query: 816 SLQRHK 833
++QRHK
Sbjct: 436 TIQRHK 441
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,794,704
Number of extensions: 1404329
Number of successful extensions: 8349
Number of sequences better than 1.0e-05: 99
Number of HSP's gapped: 8162
Number of HSP's successfully gapped: 104
Length of query: 410
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 305
Effective length of database: 15,374,224
Effective search space: 4689138320
Effective search space used: 4689138320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009018
(1232 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123049.1| PREDICTED: casein kinase I isoform gamma-2 [... 512 e-145
Alignment gi|XP_003123926.2| PREDICTED: casein kinase I isoform gamma-3-l... 454 e-128
Alignment gi|XP_001927058.3| PREDICTED: casein kinase I isoform gamma-1-l... 421 e-118
Alignment gi|XP_003355386.1| PREDICTED: casein kinase I isoform epsilon i... 251 4e-67
Alignment gi|XP_003126072.1| PREDICTED: casein kinase I isoform epsilon i... 251 4e-67
Alignment gi|XP_003357975.1| PREDICTED: hypothetical protein LOC100625051... 245 3e-65
Alignment gi|XP_003124136.1| PREDICTED: casein kinase I isoform alpha iso... 236 2e-62
Alignment gi|XP_003354399.1| PREDICTED: casein kinase I isoform alpha [Su... 230 1e-60
Alignment gi|XP_001929339.2| PREDICTED: tau-tubulin kinase 1 [Sus scrofa]. 118 6e-27
Alignment gi|XP_003353431.1| PREDICTED: tau-tubulin kinase 2 [Sus scrofa]. 113 2e-25
>ref|XP_003123049.1| PREDICTED: casein kinase I isoform gamma-2 [Sus scrofa].
Length = 409
Score = 512 bits (1319), Expect = e-145
Identities = 255/277 (92%), Positives = 256/277 (92%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP
Sbjct: 138 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 197
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGK +L A G MFMYFLRGSLPWQGLKAD
Sbjct: 198 ETKKHIPYREHKSLTGTARYMSINTHLGK-----GELHAXGPMFMYFLRGSLPWQGLKAD 252
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 253 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 312
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA
Sbjct: 313 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 372
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
GHSNAPITAPAEVEVADDT SLQRHK
Sbjct: 373 GHSNAPITAPAEVEVADDTKCCCFFKRRKRKSLQRHK 409
>ref|XP_003123926.2| PREDICTED: casein kinase I isoform gamma-3-like [Sus scrofa].
Length = 311
Score = 454 bits (1167), Expect = e-128
Identities = 222/263 (84%), Positives = 236/263 (89%), Gaps = 4/263 (1%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLI+RMEYVH+K+LIYRDVKPENFL+GRPG K Q IHIIDFGLAKEYIDP
Sbjct: 23 LKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDP 82
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 83 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 142
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 143 TLKERYQKIGDTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 202
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTD--LPSQPQARE--KALLHSKNQALNSTNGELNAD 710
G++FDYEYDW GK LPTP+G V D L S +A + + SKNQ ++STNGELN D
Sbjct: 203 KGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSKNQVVSSTNGELNTD 262
Query: 711 DPTAGHSNAPITAPAEVEVADDT 779
DPTAG SNAPITAP EVEV D+T
Sbjct: 263 DPTAGRSNAPITAPTEVEVMDET 285
>ref|XP_001927058.3| PREDICTED: casein kinase I isoform gamma-1-like [Sus scrofa].
Length = 494
Score = 421 bits (1082), Expect = e-118
Identities = 209/302 (69%), Positives = 230/302 (76%), Gaps = 44/302 (14%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQL++RMEYVH+K+LIYRDVKPENFL+GR G K++H IHIIDFGLAKEYIDP
Sbjct: 166 LKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAKEYIDP 225
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 226 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 285
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKR TPIE LCE+FPEEMATYLRYVRRLDFFEKPDY+YLR LFTDLF+R
Sbjct: 286 TLKERYQKIGDTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFER 345
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHT---------------DLPSQPQAREKALLHSKN-- 671
G+ FDY YDW G+P+PTP+G+VH D PSQ R + +
Sbjct: 346 KGYAFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQPIRNQTASSERRGE 405
Query: 672 ---------------------------QALNSTNGELNADDPTAGHSNAPITAPAEVEVA 770
Q ++STNGELN DDPT HSNAPITA AEVEV
Sbjct: 406 WEIQPSRQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDPTGAHSNAPITAHAEVEVV 465
Query: 771 DD 776
++
Sbjct: 466 EE 467
>ref|XP_003355386.1| PREDICTED: casein kinase I isoform epsilon isoform 2 [Sus scrofa].
Length = 416
Score = 251 bits (642), Expect = 4e-67
Identities = 117/191 (61%), Positives = 155/191 (81%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 102 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 159
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 219
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + K +TPIEVLC+ +P E +TYL + R L F +KPDY YLR+LF +LF R
Sbjct: 220 TKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
Query: 543 SGFVFDYEYDW 575
GF +DY +DW
Sbjct: 280 QGFSYDYVFDW 290
>ref|XP_003126072.1| PREDICTED: casein kinase I isoform epsilon isoform 1 [Sus scrofa].
Length = 416
Score = 251 bits (642), Expect = 4e-67
Identities = 117/191 (61%), Positives = 155/191 (81%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 102 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 159
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 219
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + K +TPIEVLC+ +P E +TYL + R L F +KPDY YLR+LF +LF R
Sbjct: 220 TKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
Query: 543 SGFVFDYEYDW 575
GF +DY +DW
Sbjct: 280 QGFSYDYVFDW 290
>ref|XP_003357975.1| PREDICTED: hypothetical protein LOC100625051 [Sus scrofa].
Length = 620
Score = 245 bits (626), Expect = 3e-65
Identities = 117/191 (61%), Positives = 154/191 (80%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 75 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 132
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 133 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 192
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + + +TPIEVLC+ P E ATYL + R L F +KPDY YLR+LF +LF R
Sbjct: 193 TKRQKYERISEKEMSTPIEVLCK-LPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 251
Query: 543 SGFVFDYEYDW 575
GF +DY +DW
Sbjct: 252 QGFSYDYVFDW 262
>ref|XP_003124136.1| PREDICTED: casein kinase I isoform alpha isoform 1 [Sus scrofa].
Length = 337
Score = 236 bits (602), Expect = 2e-62
Identities = 114/191 (59%), Positives = 146/191 (76%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
+KTVLM+A Q+I+R+EYVHTK+ I+RD+KP+NFL+G + + + +IDFGLAK+Y D
Sbjct: 110 MKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIG--RHCNKLFLIDFGLAKKYRDN 167
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T++HIPYRE K+LTGTARY SIN HLG EQSRRDD+E+LG++ MYF R SLPWQGLKA
Sbjct: 168 RTRQHIPYREDKNLTGTARYASINAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAA 227
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T K++Y+KI + K +TP+EVLC+ FP E A YL Y R L F E PDY YLR+LF LF
Sbjct: 228 TKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 287
Query: 543 SGFVFDYEYDW 575
+DY +DW
Sbjct: 288 LNHQYDYTFDW 298
>ref|XP_003354399.1| PREDICTED: casein kinase I isoform alpha [Sus scrofa].
Length = 364
Score = 230 bits (586), Expect = 1e-60
Identities = 117/217 (53%), Positives = 149/217 (68%), Gaps = 26/217 (11%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVG----------RPGTKRQHA----- 137
+KTVLM+A Q+I+R+EYVHTK+ I+RD+KP+NFL+G P KR+ +
Sbjct: 110 MKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKCLESPVGKRKRSMTVST 169
Query: 138 -----------IHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRR 284
+ +IDFGLAK+Y D T++HIPYRE K+LTGTARY SIN HLG EQSRR
Sbjct: 170 SQDPSFSGLNQLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASINAHLGIEQSRR 229
Query: 285 DDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCESFPEEMATYLR 464
DD+E+LG++ MYF R SLPWQGLKA T K++Y+KI + K +TP+EVLC+ FP E A YL
Sbjct: 230 DDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLN 289
Query: 465 YVRRLDFFEKPDYDYLRKLFTDLFDRSGFVFDYEYDW 575
Y R L F E PDY YLR+LF LF +DY +DW
Sbjct: 290 YCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFDW 326
>ref|XP_001929339.2| PREDICTED: tau-tubulin kinase 1 [Sus scrofa].
Length = 1305
Score = 118 bits (296), Expect = 6e-27
Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 1/220 (0%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGR-PGTKRQHAIHIIDFGLAKEYID 179
L T L + Q++ +E +H+ ++RD+KP NF +GR P T R+ +++DFGLA++Y +
Sbjct: 128 LSTTLRLGKQILESIEAIHSVGFLHRDIKPSNFAMGRLPSTYRK--CYMLDFGLARQYTN 185
Query: 180 PETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA 359
T P R GT RY S+N H +E R DDL +L +M + F G LPW+ +K
Sbjct: 186 T-TGDVRPPRNVAGFRGTVRYASVNAHKNREMGRHDDLWSLFYMLVEFAVGQLPWRKIKD 244
Query: 360 DTLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFD 539
+++G K +L + P E +L ++ LD+F KPDY + +F +
Sbjct: 245 K------EQVGMIKEKYEHRMLLKHMPSEFHLFLDHIASLDYFTKPDYQLIMSVFENSMK 298
Query: 540 RSGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALL 659
G + +DW + T T P Q R+ A +
Sbjct: 299 ERGIAENEAFDWEKAGTDALLST-STSTPPQQNTRQTAAM 337
>ref|XP_003353431.1| PREDICTED: tau-tubulin kinase 2 [Sus scrofa].
Length = 1243
Score = 113 bits (282), Expect = 2e-25
Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 1/215 (0%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGR-PGTKRQHAIHIIDFGLAKEYID 179
+ T L + Q++ +E +H+ ++RD+KP NF +GR P T R+ +++DFGLA+++ +
Sbjct: 115 ISTTLRLGRQILESIESIHSVGFLHRDIKPSNFAMGRFPSTCRK--CYMLDFGLARQFTN 172
Query: 180 PETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA 359
P R GT RY SIN H +E R DDL +L +M + F+ G LPW+ +K
Sbjct: 173 SCGDVRPP-RAVAGFRGTVRYASINAHRNREMGRHDDLWSLFYMLVEFVVGQLPWRKIKD 231
Query: 360 DTLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFD 539
+++G K ++ + P E + +L ++ LD+F KPDY L +F +
Sbjct: 232 K------EQVGSIKERYDHRLMLKHLPPEFSIFLDHISSLDYFTKPDYQLLTSVFDNSIK 285
Query: 540 RSGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAR 644
G + +DW + T T Q R
Sbjct: 286 TFGVIESDPFDWEKTGTDGSLTTTTTSTTPQLHTR 320
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,259,678
Number of extensions: 878610
Number of successful extensions: 5009
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 4943
Number of HSP's successfully gapped: 37
Length of query: 410
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 309
Effective length of database: 8,829,335
Effective search space: 2728264515
Effective search space used: 2728264515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009018
(1232 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598763.1| casein kinase I isoform gamma-2 isoform 1 [Mus ... 518 e-147
Alignment gi|NP_001153063.1| casein kinase I isoform gamma-2 isoform 2 [M... 518 e-147
Alignment gi|NP_690022.2| casein kinase I isoform gamma-3 [Mus musculus]. 454 e-128
Alignment gi|NP_775277.2| casein kinase I isoform gamma-1 [Mus musculus]. 425 e-119
Alignment gi|NP_620690.1| casein kinase I isoform delta isoform 1 [Mus mu... 259 4e-69
Alignment gi|NP_082150.1| casein kinase I isoform delta isoform 2 [Mus mu... 259 4e-69
Alignment gi|NP_038795.3| casein kinase I isoform epsilon [Mus musculus]. 251 6e-67
Alignment gi|NP_666199.1| casein kinase I isoform alpha [Mus musculus]. 236 3e-62
Alignment gi|NP_001156336.1| tau-tubulin kinase 1 [Mus musculus]. 118 8e-27
Alignment gi|NP_001020028.1| tau-tubulin kinase 2 isoform 2 [Mus musculus]. 114 1e-25
>ref|NP_598763.1| casein kinase I isoform gamma-2 isoform 1 [Mus musculus].
Length = 442
Score = 518 bits (1334), Expect = e-147
Identities = 252/277 (90%), Positives = 259/277 (93%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPG+KRQH+IHIIDFGLAKEYIDP
Sbjct: 166 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGSKRQHSIHIIDFGLAKEYIDP 225
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 226 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 285
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 286 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 345
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
SG+VFDYEYDWAGKPLPTPIGTVH D+PSQP R+KA LH+KNQALNSTNGELN DDPTA
Sbjct: 346 SGYVFDYEYDWAGKPLPTPIGTVHPDVPSQPPHRDKAQLHTKNQALNSTNGELNTDDPTA 405
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
GHSNAPI APAEVEVAD+T SLQRHK
Sbjct: 406 GHSNAPIAAPAEVEVADETKCCCFFKRRKRKSLQRHK 442
>ref|NP_001153063.1| casein kinase I isoform gamma-2 isoform 2 [Mus musculus].
Length = 415
Score = 518 bits (1334), Expect = e-147
Identities = 252/277 (90%), Positives = 259/277 (93%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPG+KRQH+IHIIDFGLAKEYIDP
Sbjct: 139 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGSKRQHSIHIIDFGLAKEYIDP 198
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 199 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 258
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 259 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 318
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
SG+VFDYEYDWAGKPLPTPIGTVH D+PSQP R+KA LH+KNQALNSTNGELN DDPTA
Sbjct: 319 SGYVFDYEYDWAGKPLPTPIGTVHPDVPSQPPHRDKAQLHTKNQALNSTNGELNTDDPTA 378
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
GHSNAPI APAEVEVAD+T SLQRHK
Sbjct: 379 GHSNAPIAAPAEVEVADETKCCCFFKRRKRKSLQRHK 415
>ref|NP_690022.2| casein kinase I isoform gamma-3 [Mus musculus].
Length = 424
Score = 454 bits (1167), Expect = e-128
Identities = 222/263 (84%), Positives = 236/263 (89%), Gaps = 4/263 (1%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLI+RMEYVH+K+LIYRDVKPENFL+GRPG K Q IHIIDFGLAKEYIDP
Sbjct: 136 LKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKAQQVIHIIDFGLAKEYIDP 195
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 196 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 255
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 256 TLKERYQKIGDTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 315
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTD--LPSQPQARE--KALLHSKNQALNSTNGELNAD 710
G++FDYEYDW GK LPTP+G V D L S +A + + SKNQ ++STNGELN D
Sbjct: 316 KGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKIQQSKNQVVSSTNGELNTD 375
Query: 711 DPTAGHSNAPITAPAEVEVADDT 779
DPTAG SNAPITAP EVEV D+T
Sbjct: 376 DPTAGRSNAPITAPTEVEVMDET 398
>ref|NP_775277.2| casein kinase I isoform gamma-1 [Mus musculus].
Length = 459
Score = 425 bits (1092), Expect = e-119
Identities = 213/322 (66%), Positives = 235/322 (72%), Gaps = 45/322 (13%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQL++RMEYVH+K+LIYRDVKPENFL+GR G K++H IHIIDFGLAKEY+DP
Sbjct: 138 LKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAKEYVDP 197
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 198 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 257
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKR TPIE LCE+FPEEMATYLRYVRRLDFFEKPDY+YLR LFTDLF+R
Sbjct: 258 TLKERYQKIGDTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFER 317
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHT---------------DLPSQPQAREKALLHSKN-- 671
G+ FDY YDW G+P+PTP+G+VH D PSQ Q S+
Sbjct: 318 KGYTFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQTTSSERRG 377
Query: 672 ----------------------------QALNSTNGELNADDPTAGHSNAPITAPAEVEV 767
Q ++STNGELN DDPT HSNAPITA AEVEV
Sbjct: 378 EWEIQPSRQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDPTGAHSNAPITAHAEVEV 437
Query: 768 ADDTXXXXXXXXXXXXSLQRHK 833
++ + QRHK
Sbjct: 438 VEEAKCCCFFKRKRKKTAQRHK 459
>ref|NP_620690.1| casein kinase I isoform delta isoform 1 [Mus musculus].
Length = 415
Score = 259 bits (661), Expect = 4e-69
Identities = 127/225 (56%), Positives = 168/225 (74%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 102 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 159
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 219
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + K +TPIEVLC+ +P E ATYL + R L F +KPDY YLR+LF +LF R
Sbjct: 220 TKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQA 677
GF +DY +DW L D + + RE+ L HS+N A
Sbjct: 280 QGFSYDYVFDW--NMLKFGASRAADDAERERRDREERLRHSRNPA 322
>ref|NP_082150.1| casein kinase I isoform delta isoform 2 [Mus musculus].
Length = 409
Score = 259 bits (661), Expect = 4e-69
Identities = 127/225 (56%), Positives = 168/225 (74%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 102 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 159
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 219
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + K +TPIEVLC+ +P E ATYL + R L F +KPDY YLR+LF +LF R
Sbjct: 220 TKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQA 677
GF +DY +DW L D + + RE+ L HS+N A
Sbjct: 280 QGFSYDYVFDW--NMLKFGASRAADDAERERRDREERLRHSRNPA 322
>ref|NP_038795.3| casein kinase I isoform epsilon [Mus musculus].
Length = 416
Score = 251 bits (642), Expect = 6e-67
Identities = 117/191 (61%), Positives = 155/191 (81%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 102 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 159
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 219
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + K +TPIEVLC+ +P E +TYL + R L F +KPDY YLR+LF +LF R
Sbjct: 220 TKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
Query: 543 SGFVFDYEYDW 575
GF +DY +DW
Sbjct: 280 QGFSYDYVFDW 290
>ref|NP_666199.1| casein kinase I isoform alpha [Mus musculus].
Length = 325
Score = 236 bits (602), Expect = 3e-62
Identities = 114/191 (59%), Positives = 146/191 (76%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
+KTVLM+A Q+I+R+EYVHTK+ I+RD+KP+NFL+G + + + +IDFGLAK+Y D
Sbjct: 110 MKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIG--RHCNKLFLIDFGLAKKYRDN 167
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T++HIPYRE K+LTGTARY SIN HLG EQSRRDD+E+LG++ MYF R SLPWQGLKA
Sbjct: 168 RTRQHIPYREDKNLTGTARYASINAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAA 227
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T K++Y+KI + K +TP+EVLC+ FP E A YL Y R L F E PDY YLR+LF LF
Sbjct: 228 TKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 287
Query: 543 SGFVFDYEYDW 575
+DY +DW
Sbjct: 288 LNHQYDYTFDW 298
>ref|NP_001156336.1| tau-tubulin kinase 1 [Mus musculus].
Length = 1308
Score = 118 bits (296), Expect = 8e-27
Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 1/220 (0%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGR-PGTKRQHAIHIIDFGLAKEYID 179
L T L + Q++ +E +H+ ++RD+KP NF +GR P T R+ +++DFGLA++Y +
Sbjct: 128 LSTTLRLGKQILESIEAIHSVGFLHRDIKPSNFAMGRLPSTYRK--CYMLDFGLARQYTN 185
Query: 180 PETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA 359
T P R GT RY S+N H +E R DDL +L +M + F G LPW+ +K
Sbjct: 186 T-TGDVRPPRNVAGFRGTVRYASVNAHKNREMGRHDDLWSLFYMLVEFAVGQLPWRKIKD 244
Query: 360 DTLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFD 539
+++G K +L + P E +L ++ LD+F KPDY + +F +
Sbjct: 245 K------EQVGMIKEKYEHRMLLKHMPSEFHLFLDHIASLDYFTKPDYQLIMSVFENSMK 298
Query: 540 RSGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALL 659
G + +DW + T T P Q R+ A +
Sbjct: 299 ERGIAENEAFDWEKAGTDALLST-STSTPPQQNTRQTAAM 337
>ref|NP_001020028.1| tau-tubulin kinase 2 isoform 2 [Mus musculus].
Length = 1243
Score = 114 bits (286), Expect = 1e-25
Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 1/215 (0%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGR-PGTKRQHAIHIIDFGLAKEYID 179
+ T L + Q++ +E +H+ ++RD+KP NF +GR P T R+ ++DFGLA+++ +
Sbjct: 115 ISTTLRLGKQILESIESIHSVGFLHRDIKPSNFAMGRFPSTCRK--CFMLDFGLARQFTN 172
Query: 180 PETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA 359
P R GT RY SIN H +E R DDL +L +M + F+ G LPW+ +K
Sbjct: 173 SCGDVRPP-RAVAGFRGTVRYASINAHRNREMGRHDDLWSLFYMLVEFVVGQLPWRKIKD 231
Query: 360 DTLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFD 539
+++G K ++ + P E +T+L ++ LD+F KPDY L +F +
Sbjct: 232 K------EQVGSIKERYDHRLMLKHLPPEFSTFLDHISSLDYFTKPDYQLLTSVFDNSIK 285
Query: 540 RSGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAR 644
G + +DW + T T Q R
Sbjct: 286 TFGVIESDPFDWEKSGTDGSLTTTTTSATPQLHTR 320
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,210,104
Number of extensions: 1134876
Number of successful extensions: 6152
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 6029
Number of HSP's successfully gapped: 49
Length of query: 410
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 306
Effective length of database: 12,493,815
Effective search space: 3823107390
Effective search space used: 3823107390
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009018
(1232 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001310.3| casein kinase I isoform gamma-2 [Homo sapiens]. 527 e-150
Alignment gi|NP_001038187.1| casein kinase I isoform gamma-3 isoform 3 [H... 452 e-127
Alignment gi|NP_001026982.1| casein kinase I isoform gamma-3 isoform 2 [H... 447 e-126
Alignment gi|NP_071331.2| casein kinase I isoform gamma-1 [Homo sapiens]. 438 e-123
Alignment gi|NP_004375.2| casein kinase I isoform gamma-3 isoform 1 [Homo... 436 e-122
Alignment gi|NP_001038188.1| casein kinase I isoform gamma-3 isoform 4 [H... 431 e-121
Alignment gi|NP_620693.1| casein kinase I isoform delta isoform 2 [Homo s... 259 5e-69
Alignment gi|NP_001884.2| casein kinase I isoform delta isoform 1 [Homo s... 259 5e-69
Alignment gi|NP_689407.1| casein kinase I isoform epsilon [Homo sapiens]. 251 7e-67
Alignment gi|NP_001885.1| casein kinase I isoform epsilon [Homo sapiens]. 251 7e-67
>ref|NP_001310.3| casein kinase I isoform gamma-2 [Homo sapiens].
Length = 415
Score = 527 bits (1358), Expect = e-150
Identities = 258/277 (93%), Positives = 261/277 (94%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP
Sbjct: 139 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 198
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 199 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 258
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 259 TLKERYQKIGDTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 318
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQALNSTNGELNADDPTA 722
SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQ R+K HSKNQALNSTNGELNADDPTA
Sbjct: 319 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQLRDKTQPHSKNQALNSTNGELNADDPTA 378
Query: 723 GHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
GHSNAPITAPAEVEVAD+T SLQRHK
Sbjct: 379 GHSNAPITAPAEVEVADETKCCCFFKRRKRKSLQRHK 415
>ref|NP_001038187.1| casein kinase I isoform gamma-3 isoform 3 [Homo sapiens].
Length = 415
Score = 452 bits (1164), Expect = e-127
Identities = 225/281 (80%), Positives = 241/281 (85%), Gaps = 4/281 (1%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLI+RMEYVH+K+LIYRDVKPENFL+GRPG K Q IHIIDFGLAKEYIDP
Sbjct: 136 LKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDP 195
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 196 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 255
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FP EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 256 TLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 314
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTD--LPSQPQARE--KALLHSKNQALNSTNGELNAD 710
G++FDYEYDW GK LPTP+G V D L S +A + + SKNQ ++STNGELN D
Sbjct: 315 KGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSKNQVVSSTNGELNTD 374
Query: 711 DPTAGHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
DPTAG SNAPITAP EVEV D+T ++QRHK
Sbjct: 375 DPTAGRSNAPITAPTEVEVMDETKCCCFFKRRKRKTIQRHK 415
>ref|NP_001026982.1| casein kinase I isoform gamma-3 isoform 2 [Homo sapiens].
Length = 423
Score = 447 bits (1150), Expect = e-126
Identities = 221/263 (84%), Positives = 235/263 (89%), Gaps = 4/263 (1%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLI+RMEYVH+K+LIYRDVKPENFL+GRPG K Q IHIIDFGLAKEYIDP
Sbjct: 136 LKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDP 195
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 196 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 255
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FP EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 256 TLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 314
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTD--LPSQPQARE--KALLHSKNQALNSTNGELNAD 710
G++FDYEYDW GK LPTP+G V D L S +A + + SKNQ ++STNGELN D
Sbjct: 315 KGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSKNQVVSSTNGELNTD 374
Query: 711 DPTAGHSNAPITAPAEVEVADDT 779
DPTAG SNAPITAP EVEV D+T
Sbjct: 375 DPTAGRSNAPITAPTEVEVMDET 397
>ref|NP_071331.2| casein kinase I isoform gamma-1 [Homo sapiens].
Length = 422
Score = 438 bits (1127), Expect = e-123
Identities = 211/285 (74%), Positives = 234/285 (82%), Gaps = 8/285 (2%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQL++RMEYVH+K+LIYRDVKPENFL+GR G K++H IHIIDFGLAKEYIDP
Sbjct: 138 LKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAKEYIDP 197
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 198 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 257
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKR TPIE LCE+FPEEMATYLRYVRRLDFFEKPDY+YLR LFTDLF++
Sbjct: 258 TLKERYQKIGDTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFEK 317
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHS--------KNQALNSTNGE 698
G+ FDY YDW G+P+PTP+G+VH D + RE +NQ ++STNGE
Sbjct: 318 KGYTFDYAYDWVGRPIPTPVGSVHVDSGASAITRESHTHRDRPSQQQPLRNQVVSSTNGE 377
Query: 699 LNADDPTAGHSNAPITAPAEVEVADDTXXXXXXXXXXXXSLQRHK 833
LN DDPT HSNAPITA AEVEV ++ + QRHK
Sbjct: 378 LNVDDPTGAHSNAPITAHAEVEVVEEAKCCCFFKRKRKKTAQRHK 422
>ref|NP_004375.2| casein kinase I isoform gamma-3 isoform 1 [Homo sapiens].
Length = 447
Score = 436 bits (1122), Expect = e-122
Identities = 225/313 (71%), Positives = 242/313 (77%), Gaps = 36/313 (11%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLI+RMEYVH+K+LIYRDVKPENFL+GRPG K Q IHIIDFGLAKEYIDP
Sbjct: 136 LKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDP 195
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 196 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 255
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FP EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 256 TLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 314
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTD--LPSQPQARE--KALLHSKNQA----------- 677
G++FDYEYDW GK LPTP+G V D L S +A + + SKNQ+
Sbjct: 315 KGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSKNQSADHRAAWDSQQ 374
Query: 678 ---------------------LNSTNGELNADDPTAGHSNAPITAPAEVEVADDTXXXXX 794
++STNGELN DDPTAG SNAPITAP EVEV D+T
Sbjct: 375 ANPHHLRAHLAADRHGGSVQVVSSTNGELNTDDPTAGRSNAPITAPTEVEVMDETKCCCF 434
Query: 795 XXXXXXXSLQRHK 833
++QRHK
Sbjct: 435 FKRRKRKTIQRHK 447
>ref|NP_001038188.1| casein kinase I isoform gamma-3 isoform 4 [Homo sapiens].
Length = 455
Score = 431 bits (1108), Expect = e-121
Identities = 221/295 (74%), Positives = 236/295 (80%), Gaps = 36/295 (12%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVLMIAIQLI+RMEYVH+K+LIYRDVKPENFL+GRPG K Q IHIIDFGLAKEYIDP
Sbjct: 136 LKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDP 195
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD
Sbjct: 196 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 255
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
TLKERYQKIGDTKRATPIEVLCE+FP EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR
Sbjct: 256 TLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 314
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTD--LPSQPQARE--KALLHSKNQA----------- 677
G++FDYEYDW GK LPTP+G V D L S +A + + SKNQ+
Sbjct: 315 KGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSKNQSADHRAAWDSQQ 374
Query: 678 ---------------------LNSTNGELNADDPTAGHSNAPITAPAEVEVADDT 779
++STNGELN DDPTAG SNAPITAP EVEV D+T
Sbjct: 375 ANPHHLRAHLAADRHGGSVQVVSSTNGELNTDDPTAGRSNAPITAPTEVEVMDET 429
>ref|NP_620693.1| casein kinase I isoform delta isoform 2 [Homo sapiens].
Length = 409
Score = 259 bits (661), Expect = 5e-69
Identities = 127/225 (56%), Positives = 168/225 (74%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 102 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 159
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 219
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + K +TPIEVLC+ +P E ATYL + R L F +KPDY YLR+LF +LF R
Sbjct: 220 TKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQA 677
GF +DY +DW L D + + RE+ L HS+N A
Sbjct: 280 QGFSYDYVFDW--NMLKFGASRAADDAERERRDREERLRHSRNPA 322
>ref|NP_001884.2| casein kinase I isoform delta isoform 1 [Homo sapiens].
Length = 415
Score = 259 bits (661), Expect = 5e-69
Identities = 127/225 (56%), Positives = 168/225 (74%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 102 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 159
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 219
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + K +TPIEVLC+ +P E ATYL + R L F +KPDY YLR+LF +LF R
Sbjct: 220 TKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
Query: 543 SGFVFDYEYDWAGKPLPTPIGTVHTDLPSQPQAREKALLHSKNQA 677
GF +DY +DW L D + + RE+ L HS+N A
Sbjct: 280 QGFSYDYVFDW--NMLKFGASRAADDAERERRDREERLRHSRNPA 322
>ref|NP_689407.1| casein kinase I isoform epsilon [Homo sapiens].
Length = 416
Score = 251 bits (642), Expect = 7e-67
Identities = 117/191 (61%), Positives = 155/191 (81%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 102 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 159
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 219
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + K +TPIEVLC+ +P E +TYL + R L F +KPDY YLR+LF +LF R
Sbjct: 220 TKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
Query: 543 SGFVFDYEYDW 575
GF +DY +DW
Sbjct: 280 QGFSYDYVFDW 290
>ref|NP_001885.1| casein kinase I isoform epsilon [Homo sapiens].
Length = 416
Score = 251 bits (642), Expect = 7e-67
Identities = 117/191 (61%), Positives = 155/191 (81%)
Frame = +3
Query: 3 LKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDP 182
LKTVL++A Q+I+R+EY+H+K+ I+RDVKP+NFL+G K+ + ++IIDFGLAK+Y D
Sbjct: 102 LKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG--KKGNLVYIIDFGLAKKYRDA 159
Query: 183 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD 362
T +HIPYRE+K+LTGTARY SINTHLG EQSRRDDLE+LG++ MYF GSLPWQGLKA
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 219
Query: 363 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 542
T +++Y++I + K +TPIEVLC+ +P E +TYL + R L F +KPDY YLR+LF +LF R
Sbjct: 220 TKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
Query: 543 SGFVFDYEYDW 575
GF +DY +DW
Sbjct: 280 QGFSYDYVFDW 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,758,478
Number of extensions: 1374231
Number of successful extensions: 7623
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 7484
Number of HSP's successfully gapped: 73
Length of query: 410
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,835,944
Effective search space: 4524962920
Effective search space used: 4524962920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009018
(1232 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 831 0.0
Sscrofa_Chr09 159 4e-36
gb|GL896357.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 72 8e-10
Sscrofa_Chr01 72 8e-10
>Sscrofa_Chr02
|| Length = 162569375
Score = 831 bits (419), Expect = 0.0
Identities = 441/451 (97%)
Strand = Plus / Minus
Query: 782 gtgctgctgtttcttcaagaggagaaagagaaaatcgctgcagcgacacaagtgaccctg 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77280141 gtgctgctgtttcttcaagaggagaaagagaaaatcgctgcagcgacacaagtgaccctg 77280082
Query: 842 ggctggtggcccctgaatcctctcactgcagcccctcggggccagcttgtccacggccgt 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77280081 ggctggtggcccctgaatcctctcactgcagcccctcggggccagcttgtccacggccgt 77280022
Query: 902 gtggccacagccggatgcagactgcaggcccggcagagttgccgnnnnnnnnacgtgggg 961
||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 77280021 gtggccacagccggatgcagactgcaggcccagcagagttgccgccccccccacgtgggg 77279962
Query: 962 tcacttctttcacataagactttggtcgagatttttacacctgtgtctagtccttccctc 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77279961 tcacttctttcacataagactttggtcgagatttttacacctgtgtctagtccttccctc 77279902
Query: 1022 caagagcattaactatttaaaacaaggaacagagaaaaccagagcggccgccctgccctg 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77279901 caagagcattaactatttaaaacaaggaacagagaaaaccagagcggccgccctgccctg 77279842
Query: 1082 cacccgcctgtgtccactgagtgagtagtgcggccctgccatccagcctgccgccccgtt 1141
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77279841 cgcccgcctgtgtccactgagtgagtagtgcggccctgccatccagcctgccgccccgtt 77279782
Query: 1142 agtgtcataaagtgcagcttgtctccctcgatccaaaggccgttttctcgagggggcgct 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77279781 agtgtcataaagtgcagcttgtctccctcgatccaaaggccgttttctcgagggggcgct 77279722
Query: 1202 gtggggcgttgctgctgggggtgagtctccc 1232
|||||||||||||||||||||||||||||||
Sbjct: 77279721 gtggggcgttgctgctgggggtgagtctccc 77279691
Score = 468 bits (236), Expect = e-129
Identities = 236/236 (100%)
Strand = Plus / Minus
Query: 35 gatcacgcgcatggagtacgtgcacaccaagagcctcatctaccgcgacgtgaagcccga 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77281549 gatcacgcgcatggagtacgtgcacaccaagagcctcatctaccgcgacgtgaagcccga 77281490
Query: 95 gaacttcctggtggggcggccgggcaccaagcggcagcacgccatccacatcatcgactt 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77281489 gaacttcctggtggggcggccgggcaccaagcggcagcacgccatccacatcatcgactt 77281430
Query: 155 cggcctggccaaggagtacatcgaccccgagaccaagaagcacatcccgtaccgcgagca 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77281429 cggcctggccaaggagtacatcgaccccgagaccaagaagcacatcccgtaccgcgagca 77281370
Query: 215 caagagcctgacgggcacggcgcgctacatgagcatcaacacgcacctgggcaagg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77281369 caagagcctgacgggcacggcgcgctacatgagcatcaacacgcacctgggcaagg 77281314
Score = 301 bits (152), Expect = 5e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 439 cagaggagatggccacttacctgcgctatgtgcggcgcctggacttctttgagaagccgg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77280811 cagaggagatggccacttacctgcgctatgtgcggcgcctggacttctttgagaagccgg 77280752
Query: 499 actacgactacctgcgcaaactcttcaccgacctctttgaccgcagtggcttcgtgtttg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77280751 actacgactacctgcgcaaactcttcaccgacctctttgaccgcagtggcttcgtgtttg 77280692
Query: 559 actatgagtacgactgggccgggaaacccctg 590
||||||||||||||||||||||||||||||||
Sbjct: 77280691 actatgagtacgactgggccgggaaacccctg 77280660
Score = 216 bits (109), Expect = 2e-53
Identities = 112/113 (99%)
Strand = Plus / Minus
Query: 671 ccaggcactgaactccaccaatggggagctgaatgccgatgaccccaccgctggccactc 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77280386 ccaggcactgaactccaccaatggggagctgaatgccgatgaccccaccgctggccactc 77280327
Query: 731 caacgcacccatcacagcccctgcagaggtggaggtggctgatgacaccaagt 783
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 77280326 caacgcacccatcacagcccccgcagaggtggaggtggctgatgacaccaagt 77280274
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 355 aggcagacacgctcaaggagcgctaccagaagatcggggacaccaagcgggccacgccca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77281000 aggcagacacgctcaaggagcgctaccagaagatcggggacaccaagcgggccacgccca 77280941
Query: 415 ttgaggtgctctgtgagagcttcccag 441
|||||||||||||||||||||||||||
Sbjct: 77280940 ttgaggtgctctgtgagagcttcccag 77280914
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 590 gcccacgcccatcggcacggtccacaccgacctgccttcgcagcctcaggctcgggagaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77280551 gcccacgcccatcggcacggtccacaccgacctgccttcgcagcctcaggctcgggagaa 77280492
Query: 650 agccctgcttcatagcaaaaaccagg 675
||||||||||||||||||||||||||
Sbjct: 77280491 agccctgcttcatagcaaaaaccagg 77280466
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 309 atgttcatgtacttcctgcgtggcagcctgccctggcaggggctcaagg 357
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77281126 atgttcatgtacttcctgcgtggcagcctgccctggcaggggctcaagg 77281078
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 1 cgctcaagacggtgctcatgatcgccatccagctg 35
|||||||||||||||||||||||||||||||||||
Sbjct: 77281730 cgctcaagacggtgctcatgatcgccatccagctg 77281696
>Sscrofa_Chr09
|| Length = 153670197
Score = 159 bits (80), Expect = 4e-36
Identities = 268/326 (82%), Gaps = 6/326 (1%)
Strand = Plus / Minus
Query: 27 atccagctgatcacgcgcatggagtacgtgcacaccaagagcctcatctaccgcgacgtg 86
||||||||||||||||||||||| ||| ||||| ||||||||||||||||| | ||||
Sbjct: 130584385 atccagctgatcacgcgcatggaatacaggcacatcaagagcctcatctaccacctcgtg 130584326
Query: 87 aagcccgagaacttcctggtggggcggccgggcaccaagcggcagcacgccatccacatc 146
|||||||| |||||||| |||||| | |||||||| |||| |||||| | |||||||||
Sbjct: 130584325 aagcccgacaacttcctagtggggtgaccgggcactaagcagcagcatg-aatccacatc 130584267
Query: 147 atcgact---tc-ggcctggccaaggagtacatcgaccccgagaccaagaagcacatccc 202
||||||| || ||||| ||||||||| | ||| || | | |||| ||||||||
Sbjct: 130584266 atcgactgactctagcctgaccaaggagtctactgactgtgacatctagaaacacatccc 130584207
Query: 203 gtaccgcgagcacaagagcctgacgggcacggcgcgctaca-tgagcatcaacacgcacc 261
| | |||||||||| |||||| |||| ||||||||||| |||| || ||| | |||
Sbjct: 130584206 gaatgatgagcacaagaccctgacaggcatggcgcgctacattgagtataaacgcttacc 130584147
Query: 262 tgggcaaggagcagagccgccgtgatgacctggaggcgctgggccacatgttcatgtact 321
|||||| | | ||||||||| |||| || |||||||||||| ||| ||||||||||||
Sbjct: 130584146 tgggcaggaaacagagccgctgtgaagatttggaggcgctggaccatgtgttcatgtact 130584087
Query: 322 tcctgcgtggcagcctgccctggcag 347
||||||||||||||||||||| ||||
Sbjct: 130584086 tcctgcgtggcagcctgccctagcag 130584061
Score = 139 bits (70), Expect = 4e-30
Identities = 267/330 (80%), Gaps = 2/330 (0%)
Strand = Plus / Minus
Query: 617 cgacctgccttcgcagcctcaggctcgggagaaagccctgcttcatagcaaaaaccaggc 676
|||| |||| || ||||||| ||||||||| ||||| ||||| || | ||||||| |||
Sbjct: 130583801 cgacgtgccctcacagcctccggctcgggacaaagcactgctacacaacaaaaac-aggt 130583743
Query: 677 actgaactccaccaatggggagctgaatgccgatgaccccaccgctggccactccaacgc 736
|||||||||||||||| ||||| ||||||| | |||||||| |||| ||| ||||| ||
Sbjct: 130583742 actgaactccaccaatagggaggtgaatgcgaaggaccccactgctgtccattccaatgc 130583683
Query: 737 acccatcacag-cccctgcagaggtggaggtggctgatgacaccaagtgctgctgtttct 795
|||||| ||| |||||| || |||||||||||| || || ||||||||| ||||||
Sbjct: 130583682 ccccatcccaggcccctgaaggggtggaggtggcagacctcagcaagtgctgtggtttct 130583623
Query: 796 tcaagaggagaaagagaaaatcgctgcagcgacacaagtgaccctgggctggtggcccct 855
|| ||| ||| ||||||| | ||||||||||||||||| ||||||| ||| ||||
Sbjct: 130583622 tctagacgaggcagagaaagttgctgcagcgacacaagtaaccctggagcagtgatccct 130583563
Query: 856 gaatcctctcactgcagcccctcggggccagcttgtccacggccgtgtggccacagccgg 915
|| ||||| ||||||| |||||||| ||||| ||||| || ||| ||||||||||
Sbjct: 130583562 gattcctcctgctgcagctcctcggggacagctagtccatagctacgtgaccacagccgg 130583503
Query: 916 atgcagactgcaggcccggcagagttgccg 945
| | ||||||||| ||||||||| |||||
Sbjct: 130583502 acactgactgcagggccggcagagctgccg 130583473
>gb|GL896357.1| Sus scrofa unplaced genomic scaffold chrU_scaffold705
Length = 37839
Score = 71.9 bits (36), Expect = 8e-10
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 687 accaatggggagctgaatgccgatgaccccaccgctggccactccaacgcacccatcaca 746
|||||||| |||||||||| |||||| ||||| | | ||||||||||||||| ||||||
Sbjct: 16012 accaatggagagctgaatgtcgatgatcccacaggagcccactccaacgcaccaatcaca 16071
Query: 747 gcccctgcagaggtggaggt 766
|| | ||| |||||||||||
Sbjct: 16072 gctcatgccgaggtggaggt 16091
>Sscrofa_Chr01
|| Length = 315321322
Score = 71.9 bits (36), Expect = 8e-10
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 687 accaatggggagctgaatgccgatgaccccaccgctggccactccaacgcacccatcaca 746
|||||||| |||||||||| |||||| ||||| | | ||||||||||||||| ||||||
Sbjct: 118783452 accaatggagagctgaatgtcgatgatcccacaggagcccactccaacgcaccaatcaca 118783511
Query: 747 gcccctgcagaggtggaggt 766
|| | ||| |||||||||||
Sbjct: 118783512 gctcatgccgaggtggaggt 118783531
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,135,878
Number of extensions: 201
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 14
Length of query: 1232
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1211
Effective length of database: 2,808,413,156
Effective search space: 3400988331916
Effective search space used: 3400988331916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)