Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009040
(1058 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694282.1| PREDICTED: zinc finger protein 281 [Bos taur... 659 0.0
Alignment gi|XP_610917.4| PREDICTED: zinc finger protein 281 [Bos taurus]. 659 0.0
Alignment gi|NP_001028293.1| zinc finger protein 148 [Bos taurus]. 185 7e-47
>ref|XP_002694282.1| PREDICTED: zinc finger protein 281 [Bos taurus].
Length = 524
Score = 659 bits (1699), Expect = 0.0
Identities = 334/352 (94%), Positives = 343/352 (97%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSAFSVNVGHMVSQQSVI 182
+SSVETI LLQST GKQGQI SNYDDAMQFSKKRRYLPTASSNSAFSV+VGHMVS QSVI
Sbjct: 136 NSSVETISLLQSTGGKQGQISSNYDDAMQFSKKRRYLPTASSNSAFSVSVGHMVSPQSVI 195
Query: 183 QSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPFS 362
QSAGVGVLDSEAPLSLIDSSALNAEIK+CHDKSGIPDEVLQSILDQYS+KSESQKEDPFS
Sbjct: 196 QSAGVGVLDSEAPLSLIDSSALNAEIKSCHDKSGIPDEVLQSILDQYSNKSESQKEDPFS 255
Query: 363 ITEPRVDLHTSGDHSELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEKSTNAGFTLG 542
I EPRVDLH SG+HSELVQE+NLSPGTQTPS+DKASMLQEYSKYLQQAFEKSTNAGFTLG
Sbjct: 256 IAEPRVDLHASGEHSELVQEENLSPGTQTPSNDKASMLQEYSKYLQQAFEKSTNAGFTLG 315
Query: 543 HGFQFVSLSSPLHNHSLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 722
HGFQFVSLSSPLHNH+LFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL
Sbjct: 316 HGFQFVSLSSPLHNHTLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 375
Query: 723 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQASSQKLTSQKEQQKNLESSAGFQIP 902
YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQ+SSQKLTSQKEQQKNLESS FQIP
Sbjct: 376 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQSSSQKLTSQKEQQKNLESSTSFQIP 435
Query: 903 SQELASQIDPQKDVEPRTTYQIENFAPAFGSQFKSGSRVPMTFITNSNGEVD 1058
SQELASQIDPQKDVEPRTTYQIENFA AFGSQFKSGSRVPMTFITNSNGEVD
Sbjct: 436 SQELASQIDPQKDVEPRTTYQIENFAQAFGSQFKSGSRVPMTFITNSNGEVD 487
>ref|XP_610917.4| PREDICTED: zinc finger protein 281 [Bos taurus].
Length = 694
Score = 659 bits (1699), Expect = 0.0
Identities = 334/352 (94%), Positives = 343/352 (97%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSAFSVNVGHMVSQQSVI 182
+SSVETI LLQST GKQGQI SNYDDAMQFSKKRRYLPTASSNSAFSV+VGHMVS QSVI
Sbjct: 306 NSSVETISLLQSTGGKQGQISSNYDDAMQFSKKRRYLPTASSNSAFSVSVGHMVSPQSVI 365
Query: 183 QSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPFS 362
QSAGVGVLDSEAPLSLIDSSALNAEIK+CHDKSGIPDEVLQSILDQYS+KSESQKEDPFS
Sbjct: 366 QSAGVGVLDSEAPLSLIDSSALNAEIKSCHDKSGIPDEVLQSILDQYSNKSESQKEDPFS 425
Query: 363 ITEPRVDLHTSGDHSELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEKSTNAGFTLG 542
I EPRVDLH SG+HSELVQE+NLSPGTQTPS+DKASMLQEYSKYLQQAFEKSTNAGFTLG
Sbjct: 426 IAEPRVDLHASGEHSELVQEENLSPGTQTPSNDKASMLQEYSKYLQQAFEKSTNAGFTLG 485
Query: 543 HGFQFVSLSSPLHNHSLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 722
HGFQFVSLSSPLHNH+LFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL
Sbjct: 486 HGFQFVSLSSPLHNHTLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 545
Query: 723 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQASSQKLTSQKEQQKNLESSAGFQIP 902
YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQ+SSQKLTSQKEQQKNLESS FQIP
Sbjct: 546 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQSSSQKLTSQKEQQKNLESSTSFQIP 605
Query: 903 SQELASQIDPQKDVEPRTTYQIENFAPAFGSQFKSGSRVPMTFITNSNGEVD 1058
SQELASQIDPQKDVEPRTTYQIENFA AFGSQFKSGSRVPMTFITNSNGEVD
Sbjct: 606 SQELASQIDPQKDVEPRTTYQIENFAQAFGSQFKSGSRVPMTFITNSNGEVD 657
>ref|NP_001028293.1| zinc finger protein 148 [Bos taurus].
Length = 794
Score = 185 bits (469), Expect = 7e-47
Identities = 114/284 (40%), Positives = 161/284 (56%), Gaps = 8/284 (2%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSA-FSVNVGHMVSQQSV 179
++ ++ + LQ K +NYDDAMQF KK+RYL AS+NS +++NVG + SQ SV
Sbjct: 441 NADIDQVDNLQEGPSKPVHSSTNYDDAMQFLKKKRYLQAASNNSREYALNVGTIASQPSV 500
Query: 180 IQSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPF 359
Q+A V+D S++DS ALN EIK+ HDK+ IPDEVLQ++LD YS K+ Q E F
Sbjct: 501 TQAAVASVIDESTTASILDSQALNVEIKSNHDKNVIPDEVLQTLLDHYSHKANGQHEISF 560
Query: 360 SITEPRVDLHTSGDHS---ELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEK-STNA 527
S+ + V S + S E+ Q +N+ +Q SSDKA+MLQEYSK+LQQA ++ S N
Sbjct: 561 SVADTEVTSSISINSSEVPEVTQSENVGSSSQASSSDKANMLQEYSKFLQQALDRTSQND 620
Query: 528 GFTLGHGFQFVSLSSPLHNHSLFP--EKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGML 701
+ FV+ + L N F +KQ+Y T P+ F + S L ++ K FG++
Sbjct: 621 AYLNSPSLNFVTDNQTLPNQPAFSSIDKQVYATMPIN-SFRSGMNSPLRTTPDKSHFGLI 679
Query: 702 FG-SQPGLYLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQA 830
G SQ S + H T +Q+ D + SQK E QA
Sbjct: 680 VGDSQHSFPFSGDETNHASATSTQDFLDQVTSQKKAEAQPVHQA 723
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,932,835
Number of extensions: 1058578
Number of successful extensions: 3247
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3235
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009040
(1058 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850543.1| PREDICTED: similar to zinc finger protein 281 [... 654 0.0
Alignment gi|XP_858086.1| PREDICTED: similar to Zinc finger protein 148 (... 182 6e-46
Alignment gi|XP_545140.1| PREDICTED: similar to Zinc finger protein 148 (... 182 6e-46
Alignment gi|XP_858042.1| PREDICTED: similar to Zinc finger protein 148 (... 93 4e-19
>ref|XP_850543.1| PREDICTED: similar to zinc finger protein 281 [Canis familiaris].
Length = 879
Score = 654 bits (1686), Expect = 0.0
Identities = 330/352 (93%), Positives = 342/352 (97%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSAFSVNVGHMVSQQSVI 182
++SVETI LLQSTSGKQGQI S YDDAMQFSKKRRYLPTASSNSAFS+NVGHMVSQQSVI
Sbjct: 513 NNSVETISLLQSTSGKQGQISSTYDDAMQFSKKRRYLPTASSNSAFSINVGHMVSQQSVI 572
Query: 183 QSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPFS 362
QSAGV VLD+E PLSLIDSSALNAEIK+CHDKSGIPDEVLQSILDQYS+KSESQKEDPFS
Sbjct: 573 QSAGVSVLDNETPLSLIDSSALNAEIKSCHDKSGIPDEVLQSILDQYSNKSESQKEDPFS 632
Query: 363 ITEPRVDLHTSGDHSELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEKSTNAGFTLG 542
ITEPRVDLHTSG+HSELVQE+NLSPGTQTPS+DKASMLQEYSKYLQQAFEKSTNAGFTLG
Sbjct: 633 ITEPRVDLHTSGEHSELVQEENLSPGTQTPSNDKASMLQEYSKYLQQAFEKSTNAGFTLG 692
Query: 543 HGFQFVSLSSPLHNHSLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 722
HGFQFVSLSSPLHNH+LFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL
Sbjct: 693 HGFQFVSLSSPLHNHTLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 752
Query: 723 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQASSQKLTSQKEQQKNLESSAGFQIP 902
YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQ+SSQKLTSQKEQQKNLESS FQIP
Sbjct: 753 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQSSSQKLTSQKEQQKNLESSTSFQIP 812
Query: 903 SQELASQIDPQKDVEPRTTYQIENFAPAFGSQFKSGSRVPMTFITNSNGEVD 1058
SQELASQIDPQKD+EPRTTYQIENFA AFGSQFKSGSRVPMTFITNS EVD
Sbjct: 813 SQELASQIDPQKDIEPRTTYQIENFAQAFGSQFKSGSRVPMTFITNSKEEVD 864
>ref|XP_858086.1| PREDICTED: similar to Zinc finger protein 148 (Zinc finger DNA
binding protein 89) (Transcription factor ZBP-89) isoform
4 [Canis familiaris].
Length = 804
Score = 182 bits (461), Expect = 6e-46
Identities = 113/284 (39%), Positives = 160/284 (56%), Gaps = 8/284 (2%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSA-FSVNVGHMVSQQSV 179
++ ++ + LQ K +NYDDAMQF KK+RYL AS+NS +++NVG + SQ SV
Sbjct: 451 NADIDQVDNLQEGPSKPVHSSTNYDDAMQFLKKKRYLQAASNNSREYALNVGTIASQPSV 510
Query: 180 IQSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPF 359
Q+A V+D S++DS ALN EIK+ HDK+ IPDEVLQ++LD YS K+ Q E F
Sbjct: 511 TQAAVASVIDESTTASILDSQALNVEIKSNHDKNVIPDEVLQTLLDHYSHKANGQHEISF 570
Query: 360 SITEPRVDLHTSGDHS---ELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEK-STNA 527
S+ + V S + S E+ Q +N+ +Q SSDKA+MLQEYSK+LQQA ++ S N
Sbjct: 571 SVADTEVTSSISINSSEVPEVTQAENVGSSSQASSSDKANMLQEYSKFLQQALDRTSQND 630
Query: 528 GFTLGHGFQFVSLSSPLHNHSLFP--EKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGML 701
+ FV+ + L N F +KQ+Y P+ F + S L ++ K FG++
Sbjct: 631 AYLNSPSLNFVTDNQTLPNPPAFSSIDKQVYAAMPIN-SFRSGMNSPLRTTPDKSHFGLI 689
Query: 702 FG-SQPGLYLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQA 830
G SQ S + H T +Q+ D + SQK E QA
Sbjct: 690 VGDSQHSFPFSGDETNHASATSTQDFLDQVTSQKKAEAQPVHQA 733
>ref|XP_545140.1| PREDICTED: similar to Zinc finger protein 148 (Zinc finger DNA
binding protein 89) (Transcription factor ZBP-89) isoform
1 [Canis familiaris].
Length = 794
Score = 182 bits (461), Expect = 6e-46
Identities = 113/284 (39%), Positives = 160/284 (56%), Gaps = 8/284 (2%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSA-FSVNVGHMVSQQSV 179
++ ++ + LQ K +NYDDAMQF KK+RYL AS+NS +++NVG + SQ SV
Sbjct: 441 NADIDQVDNLQEGPSKPVHSSTNYDDAMQFLKKKRYLQAASNNSREYALNVGTIASQPSV 500
Query: 180 IQSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPF 359
Q+A V+D S++DS ALN EIK+ HDK+ IPDEVLQ++LD YS K+ Q E F
Sbjct: 501 TQAAVASVIDESTTASILDSQALNVEIKSNHDKNVIPDEVLQTLLDHYSHKANGQHEISF 560
Query: 360 SITEPRVDLHTSGDHS---ELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEK-STNA 527
S+ + V S + S E+ Q +N+ +Q SSDKA+MLQEYSK+LQQA ++ S N
Sbjct: 561 SVADTEVTSSISINSSEVPEVTQAENVGSSSQASSSDKANMLQEYSKFLQQALDRTSQND 620
Query: 528 GFTLGHGFQFVSLSSPLHNHSLFP--EKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGML 701
+ FV+ + L N F +KQ+Y P+ F + S L ++ K FG++
Sbjct: 621 AYLNSPSLNFVTDNQTLPNPPAFSSIDKQVYAAMPIN-SFRSGMNSPLRTTPDKSHFGLI 679
Query: 702 FG-SQPGLYLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQA 830
G SQ S + H T +Q+ D + SQK E QA
Sbjct: 680 VGDSQHSFPFSGDETNHASATSTQDFLDQVTSQKKAEAQPVHQA 723
>ref|XP_858042.1| PREDICTED: similar to Zinc finger protein 148 (Zinc finger DNA
binding protein 89) (Transcription factor ZBP-89)
isoform 3 [Canis familiaris].
Length = 557
Score = 93.2 bits (230), Expect = 4e-19
Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSA-FSVNVGHMVSQQSV 179
++ ++ + LQ K +NYDDAMQF KK+RYL AS+NS +++NVG + SQ SV
Sbjct: 441 NADIDQVDNLQEGPSKPVHSSTNYDDAMQFLKKKRYLQAASNNSREYALNVGTIASQPSV 500
Query: 180 IQSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSIL 314
Q+A V+D S++DS ALN EIK+ HDK+ IPDEV++ +
Sbjct: 501 TQAAVASVIDESTTASILDSQALNVEIKSNHDKNVIPDEVMRQTM 545
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,704,962
Number of extensions: 1094236
Number of successful extensions: 3511
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3500
Number of HSP's successfully gapped: 4
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009040
(1058 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130649.1| PREDICTED: zinc finger protein 281-like [Sus... 686 0.0
Alignment gi|XP_003132669.1| PREDICTED: zinc finger protein 148-like isof... 183 2e-46
Alignment gi|XP_003132667.1| PREDICTED: zinc finger protein 148-like isof... 183 2e-46
>ref|XP_003130649.1| PREDICTED: zinc finger protein 281-like [Sus scrofa].
Length = 870
Score = 686 bits (1769), Expect = 0.0
Identities = 350/352 (99%), Positives = 351/352 (99%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSAFSVNVGHMVSQQSVI 182
SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSAFSVNVGHMVSQQSVI
Sbjct: 482 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSAFSVNVGHMVSQQSVI 541
Query: 183 QSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPFS 362
QSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPFS
Sbjct: 542 QSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPFS 601
Query: 363 ITEPRVDLHTSGDHSELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEKSTNAGFTLG 542
ITEPRVDLHTSGDHSELVQEDNLSPGTQTPS+DKASMLQEYSKYLQQAFEKSTNAGFTLG
Sbjct: 602 ITEPRVDLHTSGDHSELVQEDNLSPGTQTPSNDKASMLQEYSKYLQQAFEKSTNAGFTLG 661
Query: 543 HGFQFVSLSSPLHNHSLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 722
HGFQFVSLSSPLHNHSLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL
Sbjct: 662 HGFQFVSLSSPLHNHSLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 721
Query: 723 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQASSQKLTSQKEQQKNLESSAGFQIP 902
YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQASSQKLTSQKEQQKNLESSAGFQIP
Sbjct: 722 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQASSQKLTSQKEQQKNLESSAGFQIP 781
Query: 903 SQELASQIDPQKDVEPRTTYQIENFAPAFGSQFKSGSRVPMTFITNSNGEVD 1058
SQELASQIDPQKDVEPRTTYQIENFA AFGSQFKSGSRVPMTFITNSNGEVD
Sbjct: 782 SQELASQIDPQKDVEPRTTYQIENFAQAFGSQFKSGSRVPMTFITNSNGEVD 833
>ref|XP_003132669.1| PREDICTED: zinc finger protein 148-like isoform 3 [Sus scrofa].
Length = 794
Score = 183 bits (464), Expect = 2e-46
Identities = 113/284 (39%), Positives = 160/284 (56%), Gaps = 8/284 (2%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSA-FSVNVGHMVSQQSV 179
++ ++ + LQ K +NYDDAMQF KK+RYL AS+NS +++NVG + SQ SV
Sbjct: 441 NADIDQVDNLQEGPSKPVHSSTNYDDAMQFLKKKRYLQAASNNSREYALNVGTIASQPSV 500
Query: 180 IQSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPF 359
Q+A V+D S++DS ALN EIK+ HDK+ IPDEVLQ++LD YS K+ Q E F
Sbjct: 501 TQAAVASVIDESTTASILDSQALNVEIKSNHDKNVIPDEVLQTLLDHYSHKANGQHEISF 560
Query: 360 SITEPRVDLHTSGDHS---ELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEK-STNA 527
S+ + V S + S E+ Q +N+ +Q SSDKA+MLQEYSK+LQQA ++ S N
Sbjct: 561 SVADTEVTSSISINSSEVPEVTQSENVGSSSQASSSDKANMLQEYSKFLQQALDRTSQND 620
Query: 528 GFTLGHGFQFVSLSSPLHNHSLFP--EKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGML 701
+ FV+ + L N F +KQ+Y P+ F + S L ++ K FG++
Sbjct: 621 AYLNSPSLNFVTDNQTLPNQPAFSSIDKQVYAAMPIN-SFRSGMNSPLRTTPDKSHFGLI 679
Query: 702 FG-SQPGLYLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQA 830
G SQ S + H T +Q+ D + SQK E QA
Sbjct: 680 VGDSQHSFPFSGDETNHASATSTQDFLDQVTSQKKAEAQPVHQA 723
>ref|XP_003132667.1| PREDICTED: zinc finger protein 148-like isoform 1 [Sus scrofa].
Length = 794
Score = 183 bits (464), Expect = 2e-46
Identities = 113/284 (39%), Positives = 160/284 (56%), Gaps = 8/284 (2%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSA-FSVNVGHMVSQQSV 179
++ ++ + LQ K +NYDDAMQF KK+RYL AS+NS +++NVG + SQ SV
Sbjct: 441 NADIDQVDNLQEGPSKPVHSSTNYDDAMQFLKKKRYLQAASNNSREYALNVGTIASQPSV 500
Query: 180 IQSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPF 359
Q+A V+D S++DS ALN EIK+ HDK+ IPDEVLQ++LD YS K+ Q E F
Sbjct: 501 TQAAVASVIDESTTASILDSQALNVEIKSNHDKNVIPDEVLQTLLDHYSHKANGQHEISF 560
Query: 360 SITEPRVDLHTSGDHS---ELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEK-STNA 527
S+ + V S + S E+ Q +N+ +Q SSDKA+MLQEYSK+LQQA ++ S N
Sbjct: 561 SVADTEVTSSISINSSEVPEVTQSENVGSSSQASSSDKANMLQEYSKFLQQALDRTSQND 620
Query: 528 GFTLGHGFQFVSLSSPLHNHSLFP--EKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGML 701
+ FV+ + L N F +KQ+Y P+ F + S L ++ K FG++
Sbjct: 621 AYLNSPSLNFVTDNQTLPNQPAFSSIDKQVYAAMPIN-SFRSGMNSPLRTTPDKSHFGLI 679
Query: 702 FG-SQPGLYLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQA 830
G SQ S + H T +Q+ D + SQK E QA
Sbjct: 680 VGDSQHSFPFSGDETNHASATSTQDFLDQVTSQKKAEAQPVHQA 723
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,054,329
Number of extensions: 677636
Number of successful extensions: 2055
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2048
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009040
(1058 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153723.1| zinc finger protein 281 [Mus musculus]. 655 0.0
Alignment gi|NP_808311.1| zinc finger protein 281 [Mus musculus]. 655 0.0
Alignment gi|NP_035879.1| zinc finger protein 148 [Mus musculus]. 181 1e-45
>ref|NP_001153723.1| zinc finger protein 281 [Mus musculus].
Length = 893
Score = 655 bits (1691), Expect = 0.0
Identities = 329/352 (93%), Positives = 343/352 (97%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSAFSVNVGHMVSQQSVI 182
++SVETI LLQSTSGKQG I SNYDDAMQFSKKRRYLPTASSNSAFS+NVGHMVSQQSVI
Sbjct: 505 NNSVETISLLQSTSGKQGPISSNYDDAMQFSKKRRYLPTASSNSAFSINVGHMVSQQSVI 564
Query: 183 QSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPFS 362
QSAGV VLD+EAPLSLIDSSALNAEIK+CHDKSGIPDEVLQSILDQYS KSE+QKEDPF+
Sbjct: 565 QSAGVSVLDNEAPLSLIDSSALNAEIKSCHDKSGIPDEVLQSILDQYSGKSETQKEDPFN 624
Query: 363 ITEPRVDLHTSGDHSELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEKSTNAGFTLG 542
+TEPRVDLHTSG+HSELVQE+NLSPGTQTPS+DK SMLQEYSKYLQQAFEKSTNAGFTLG
Sbjct: 625 LTEPRVDLHTSGEHSELVQEENLSPGTQTPSNDKTSMLQEYSKYLQQAFEKSTNAGFTLG 684
Query: 543 HGFQFVSLSSPLHNHSLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 722
HGFQFVSLSSPLHNH+LFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL
Sbjct: 685 HGFQFVSLSSPLHNHTLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 744
Query: 723 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQASSQKLTSQKEQQKNLESSAGFQIP 902
YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQ+SSQKLTSQKEQQKNLESS FQIP
Sbjct: 745 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQSSSQKLTSQKEQQKNLESSTSFQIP 804
Query: 903 SQELASQIDPQKDVEPRTTYQIENFAPAFGSQFKSGSRVPMTFITNSNGEVD 1058
SQELASQIDPQKD+EPRTTYQIENFA AFGSQFKSGSRVPMTFITNSNGEVD
Sbjct: 805 SQELASQIDPQKDIEPRTTYQIENFAQAFGSQFKSGSRVPMTFITNSNGEVD 856
>ref|NP_808311.1| zinc finger protein 281 [Mus musculus].
Length = 893
Score = 655 bits (1691), Expect = 0.0
Identities = 329/352 (93%), Positives = 343/352 (97%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSAFSVNVGHMVSQQSVI 182
++SVETI LLQSTSGKQG I SNYDDAMQFSKKRRYLPTASSNSAFS+NVGHMVSQQSVI
Sbjct: 505 NNSVETISLLQSTSGKQGPISSNYDDAMQFSKKRRYLPTASSNSAFSINVGHMVSQQSVI 564
Query: 183 QSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPFS 362
QSAGV VLD+EAPLSLIDSSALNAEIK+CHDKSGIPDEVLQSILDQYS KSE+QKEDPF+
Sbjct: 565 QSAGVSVLDNEAPLSLIDSSALNAEIKSCHDKSGIPDEVLQSILDQYSGKSETQKEDPFN 624
Query: 363 ITEPRVDLHTSGDHSELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEKSTNAGFTLG 542
+TEPRVDLHTSG+HSELVQE+NLSPGTQTPS+DK SMLQEYSKYLQQAFEKSTNAGFTLG
Sbjct: 625 LTEPRVDLHTSGEHSELVQEENLSPGTQTPSNDKTSMLQEYSKYLQQAFEKSTNAGFTLG 684
Query: 543 HGFQFVSLSSPLHNHSLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 722
HGFQFVSLSSPLHNH+LFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL
Sbjct: 685 HGFQFVSLSSPLHNHTLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 744
Query: 723 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQASSQKLTSQKEQQKNLESSAGFQIP 902
YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQ+SSQKLTSQKEQQKNLESS FQIP
Sbjct: 745 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQSSSQKLTSQKEQQKNLESSTSFQIP 804
Query: 903 SQELASQIDPQKDVEPRTTYQIENFAPAFGSQFKSGSRVPMTFITNSNGEVD 1058
SQELASQIDPQKD+EPRTTYQIENFA AFGSQFKSGSRVPMTFITNSNGEVD
Sbjct: 805 SQELASQIDPQKDIEPRTTYQIENFAQAFGSQFKSGSRVPMTFITNSNGEVD 856
>ref|NP_035879.1| zinc finger protein 148 [Mus musculus].
Length = 794
Score = 181 bits (458), Expect = 1e-45
Identities = 113/284 (39%), Positives = 157/284 (55%), Gaps = 8/284 (2%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSA-FSVNVGHMVSQQSV 179
S+ ++ + LQ K +NYDDAMQF KK+RYL AS+NS +++NVG + SQ SV
Sbjct: 441 SADIDQVDNLQEGPSKPVHSSTNYDDAMQFLKKKRYLQAASNNSREYALNVGTIASQPSV 500
Query: 180 IQSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPF 359
Q+A V+D S++DS ALN EIK+ HDK+ IPDEVLQ++LD YS K Q E F
Sbjct: 501 TQAAVASVIDESTTASILDSQALNVEIKSNHDKNVIPDEVLQTLLDHYSHKPNGQHEISF 560
Query: 360 SITEPRVDLH---TSGDHSELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEK-STNA 527
S+ + V S D E+ Q +N+ +Q SSDKA+MLQEYSK+LQQA ++ S N
Sbjct: 561 SVADTEVTSSISINSSDVPEVTQSENVGSSSQASSSDKANMLQEYSKFLQQALDRTSQND 620
Query: 528 GFTLGHGFQFVSLSSPLHNHSLFP--EKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGML 701
+ FV+ + L N F +KQ+Y P+ F + S L ++ K FG++
Sbjct: 621 AYLNSPSLNFVTDNQTLPNPPAFSSIDKQVYAAMPIN-SFRSGMNSPLRTTPDKSHFGLI 679
Query: 702 FG-SQPGLYLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQA 830
G SQ S + H T + + D + SQK E QA
Sbjct: 680 VGDSQHPFPFSGDETNHASATSTADFLDQVTSQKKAEAQPVHQA 723
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,057,269
Number of extensions: 909698
Number of successful extensions: 2892
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2880
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009040
(1058 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036614.1| zinc finger protein 281 [Homo sapiens]. 655 0.0
Alignment gi|NP_068799.2| zinc finger protein 148 [Homo sapiens]. 181 8e-46
>ref|NP_036614.1| zinc finger protein 281 [Homo sapiens].
Length = 895
Score = 655 bits (1691), Expect = 0.0
Identities = 332/352 (94%), Positives = 345/352 (98%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSAFSVNVGHMVSQQSVI 182
++SVETIGLLQSTSGKQGQI SNYDDAMQFSKKRRYLPTASSNSAFS+NVGHMVSQQSVI
Sbjct: 508 NNSVETIGLLQSTSGKQGQISSNYDDAMQFSKKRRYLPTASSNSAFSINVGHMVSQQSVI 567
Query: 183 QSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPFS 362
QSAGV VLD+EAPLSLIDSSALNAEIK+CHDKSGIPDEVLQSILDQYS+KSESQKEDPF+
Sbjct: 568 QSAGVSVLDNEAPLSLIDSSALNAEIKSCHDKSGIPDEVLQSILDQYSNKSESQKEDPFN 627
Query: 363 ITEPRVDLHTSGDHSELVQEDNLSPGTQTPSSDKASMLQEYSKYLQQAFEKSTNAGFTLG 542
I EPRVDLHTSG+HSELVQE+NLSPGTQTPS+DKASMLQEYSKYLQQAFEKSTNA FTLG
Sbjct: 628 IAEPRVDLHTSGEHSELVQEENLSPGTQTPSNDKASMLQEYSKYLQQAFEKSTNASFTLG 687
Query: 543 HGFQFVSLSSPLHNHSLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 722
HGFQFVSLSSPLHNH+LFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL
Sbjct: 688 HGFQFVSLSSPLHNHTLFPEKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGMLFGSQPGL 747
Query: 723 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQASSQKLTSQKEQQKNLESSAGFQIP 902
YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQ+SSQKLTSQKE QKNLESS GFQIP
Sbjct: 748 YLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQSSSQKLTSQKE-QKNLESSTGFQIP 806
Query: 903 SQELASQIDPQKDVEPRTTYQIENFAPAFGSQFKSGSRVPMTFITNSNGEVD 1058
SQELASQIDPQKD+EPRTTYQIENFA AFGSQFKSGSRVPMTFITNSNGEVD
Sbjct: 807 SQELASQIDPQKDIEPRTTYQIENFAQAFGSQFKSGSRVPMTFITNSNGEVD 858
>ref|NP_068799.2| zinc finger protein 148 [Homo sapiens].
Length = 794
Score = 181 bits (460), Expect = 8e-46
Identities = 112/284 (39%), Positives = 161/284 (56%), Gaps = 8/284 (2%)
Frame = +3
Query: 3 SSSVETIGLLQSTSGKQGQIGSNYDDAMQFSKKRRYLPTASSNSA-FSVNVGHMVSQQSV 179
++ ++ + LQ K +NYDDAMQF KK+RYL AS+NS +++NVG + SQ SV
Sbjct: 441 NADIDQVDNLQEGPSKPVHSSTNYDDAMQFLKKKRYLQAASNNSREYALNVGTIASQPSV 500
Query: 180 IQSAGVGVLDSEAPLSLIDSSALNAEIKACHDKSGIPDEVLQSILDQYSSKSESQKEDPF 359
Q+A V+D S+++S ALN EIK+ HDK+ IPDEVLQ++LD YS K+ Q E F
Sbjct: 501 TQAAVASVIDESTTASILESQALNVEIKSNHDKNVIPDEVLQTLLDHYSHKANGQHEISF 560
Query: 360 SITEPRVDLHTSGDHSELVQ---EDNLSPGTQTPSSDKASMLQEYSKYLQQAFEK-STNA 527
S+ + V S + SE+ + +N+ +Q SSDKA+MLQEYSK+LQQA ++ S N
Sbjct: 561 SVADTEVTSSISINSSEVPEVTPSENVGSSSQASSSDKANMLQEYSKFLQQALDRTSQND 620
Query: 528 GFTLGHGFQFVSLSSPLHNHSLFP--EKQIYTTSPLECGFGQSVTSVLPSSLPKPPFGML 701
+ FV+ + L N F +KQ+Y T P+ F + S L ++ K FG++
Sbjct: 621 AYLNSPSLNFVTDNQTLPNQPAFSSIDKQVYATMPIN-SFRSGMNSPLRTTPDKSHFGLI 679
Query: 702 FG-SQPGLYLSALDATHQQLTPSQELDDLIDSQKNLETSSAFQA 830
G SQ S + H T +Q+ D + SQK E QA
Sbjct: 680 VGDSQHSFPFSGDETNHASATSTQDFLDQVTSQKKAEAQPVHQA 723
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,071,913
Number of extensions: 1082327
Number of successful extensions: 3411
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3393
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009040
(1058 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 2072 0.0
>Sscrofa_Chr10
|| Length = 79102373
Score = 2072 bits (1045), Expect = 0.0
Identities = 1054/1057 (99%)
Strand = Plus / Minus
Query: 2 cagcagcagtgtggagaccatcggtcttctgcaaagtaccagtggcaaacaaggtcaaat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27514453 cagcagcagtgtggagaccatcggtcttctgcaaagtaccagtggcaaacaaggtcaaat 27514394
Query: 62 aggcagtaattacgatgatgccatgcagttctcaaagaaaagaagatacctgccaactgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27514393 aggcagtaattacgatgatgccatgcagttctcaaagaaaagaagatacctgccaactgc 27514334
Query: 122 cagcagcaacagtgccttttccgtgaacgtgggacacatggtctcccagcagtccgtcat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27514333 cagcagcaacagtgccttttccgtgaacgtgggacacatggtctcccagcagtccgtcat 27514274
Query: 182 ccagtccgcgggtgtcggcgttttggacagtgaggccccgttgtccctcattgactcctc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27514273 ccagtccgcgggtgtcggcgttttggacagtgaggccccgttgtccctcattgactcctc 27514214
Query: 242 agctctgaacgcggagatcaaggcttgccacgacaagtcggggattcctgatgaggtttt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27514213 agctctgaacgcggagatcaaggcttgccacgacaagtcggggattcctgatgaggtttt 27514154
Query: 302 gcagagtattttggatcagtactccagcaagtcagagagccagaaggaggaccccttcag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27514153 gcagagtattttggatcagtactccagcaagtcagagagccagaaggaggaccccttcag 27514094
Query: 362 cataacggaaccccgggtggatttacacacctcaggagatcactcggagctggttcaaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27514093 cataacggaaccccgggtggatttacacacctcaggagatcactcggagctggttcaaga 27514034
Query: 422 agacaatttgagtcctggcacccagactccttccagtgataaggcaagcatgttacaaga 481
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 27514033 agacaatttgagtcctggcacccagactccttccaatgataaggcaagcatgttacaaga 27513974
Query: 482 atactccaaatacctccagcaggcttttgaaaaatccacgaatgcaggttttactctggg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513973 atactccaaatacctccagcaggcttttgaaaaatccacgaatgcaggttttactctggg 27513914
Query: 542 acacggtttccagtttgtcagtctgtcctcacctctccacaaccacagtttatttccaga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513913 acacggtttccagtttgtcagtctgtcctcacctctccacaaccacagtttatttccaga 27513854
Query: 602 aaaacagatatacactacgtctcctttggaatgtggtttcggccagtctgttacctcagt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513853 aaaacagatatacactacgtctcctttggaatgtggtttcggccagtctgttacctcagt 27513794
Query: 662 gttgccatcttcattgccaaagcctccttttgggatgttgtttggatctcagccaggtct 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513793 gttgccatcttcattgccaaagcctccttttgggatgttgtttggatctcagccaggtct 27513734
Query: 722 ttatttatctgctttggatgccactcatcagcagttgacaccttcccaggagctggatga 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513733 ttatttatctgctttggatgccactcatcagcagttgacaccttcccaggagctggatga 27513674
Query: 782 tctgatcgattctcagaagaatttagagacttcatccgccttccaggcctcatctcagaa 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513673 tctgatcgattctcagaagaatttagagacttcatccgccttccaggcctcatctcagaa 27513614
Query: 842 actgactagccagaaggaacagcagaaaaacttagagtcctcagcaggctttcagattcc 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513613 actgactagccagaaggaacagcagaaaaacttagagtcctcagcaggctttcagattcc 27513554
Query: 902 atctcaggagttagctagccagatagatcctcagaaagacgtagagcctagaacaacgta 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513553 atctcaggagttagctagccagatagatcctcagaaagacgtagagcctagaacaacgta 27513494
Query: 962 ccagattgagaacttcgcaccagcgtttggttctcagttcaagtcgggcagcagggtgcc 1021
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 27513493 ccagattgagaacttcgcacaagcgtttggttctcagttcaagtcgggcagcagggtgcc 27513434
Query: 1022 catgacttttatcactaactctaatggagaagtggac 1058
||||||||||||||||||||||||||||||||||||
Sbjct: 27513433 aatgacttttatcactaactctaatggagaagtggac 27513397
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,649,805
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 1058
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1037
Effective length of database: 2,808,413,156
Effective search space: 2912324442772
Effective search space used: 2912324442772
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)