Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009047
(1021 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069524.1| protein phosphatase methylesterase 1 [Bos ta... 239 2e-63
>ref|NP_001069524.1| protein phosphatase methylesterase 1 [Bos taurus].
Length = 380
Score = 239 bits (611), Expect = 2e-63
Identities = 113/113 (100%), Positives = 113/113 (100%)
Frame = +3
Query: 99 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 278
VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD
Sbjct: 268 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 327
Query: 279 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQ 437
KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQ
Sbjct: 328 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQ 380
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,361,335
Number of extensions: 1171920
Number of successful extensions: 4379
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4372
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009047
(1021 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860745.1| PREDICTED: similar to protein phosphatase methy... 255 4e-68
Alignment gi|XP_850122.1| PREDICTED: similar to protein phosphatase methy... 255 4e-68
Alignment gi|XP_860678.1| PREDICTED: similar to protein phosphatase methy... 255 4e-68
Alignment gi|XP_860645.1| PREDICTED: similar to protein phosphatase methy... 255 4e-68
>ref|XP_860745.1| PREDICTED: similar to protein phosphatase methylesterase 1 isoform
4 [Canis familiaris].
Length = 386
Score = 255 bits (652), Expect = 4e-68
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 99 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 278
VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD
Sbjct: 268 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 327
Query: 279 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 455
KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC
Sbjct: 328 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 386
>ref|XP_850122.1| PREDICTED: similar to protein phosphatase methylesterase 1 isoform
1 [Canis familiaris].
Length = 386
Score = 255 bits (652), Expect = 4e-68
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 99 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 278
VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD
Sbjct: 268 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 327
Query: 279 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 455
KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC
Sbjct: 328 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 386
>ref|XP_860678.1| PREDICTED: similar to protein phosphatase methylesterase 1 isoform
3 [Canis familiaris].
Length = 199
Score = 255 bits (652), Expect = 4e-68
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 99 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 278
VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD
Sbjct: 81 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 140
Query: 279 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 455
KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC
Sbjct: 141 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 199
>ref|XP_860645.1| PREDICTED: similar to protein phosphatase methylesterase 1 isoform
2 [Canis familiaris].
Length = 221
Score = 255 bits (652), Expect = 4e-68
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 99 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 278
VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD
Sbjct: 103 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 162
Query: 279 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 455
KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC
Sbjct: 163 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 221
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,981,943
Number of extensions: 1198614
Number of successful extensions: 4201
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4169
Number of HSP's successfully gapped: 4
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009047
(1021 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357238.1| PREDICTED: protein phosphatase methylesteras... 255 2e-68
>ref|XP_003357238.1| PREDICTED: protein phosphatase methylesterase 1-like [Sus scrofa].
Length = 386
Score = 255 bits (652), Expect = 2e-68
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 99 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 278
VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD
Sbjct: 268 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 327
Query: 279 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 455
KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC
Sbjct: 328 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 386
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,027,521
Number of extensions: 755080
Number of successful extensions: 2706
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2695
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009047
(1021 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082568.1| protein phosphatase methylesterase 1 [Mus muscu... 255 3e-68
>ref|NP_082568.1| protein phosphatase methylesterase 1 [Mus musculus].
Length = 386
Score = 255 bits (652), Expect = 3e-68
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 99 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 278
VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD
Sbjct: 268 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 327
Query: 279 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 455
KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC
Sbjct: 328 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 386
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,021,282
Number of extensions: 991967
Number of successful extensions: 3279
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3266
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009047
(1021 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057231.1| protein phosphatase methylesterase 1 [Homo sapi... 253 2e-67
>ref|NP_057231.1| protein phosphatase methylesterase 1 [Homo sapiens].
Length = 386
Score = 253 bits (646), Expect = 2e-67
Identities = 117/119 (98%), Positives = 119/119 (100%)
Frame = +3
Query: 99 VNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 278
++KRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD
Sbjct: 268 ISKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLD 327
Query: 279 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 455
KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC
Sbjct: 328 KDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 386
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,312,361
Number of extensions: 1180259
Number of successful extensions: 4129
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4115
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009047
(1021 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1142 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1142 bits (576), Expect = 0.0
Identities = 581/583 (99%)
Strand = Plus / Plus
Query: 439 gtgtgtttcctggctgttagtgacctgctctgcatccctccttcgacactgagctctgtt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9442208 gtgtgtttcctggctgttagtgacctgctctgcatccctccttcgacactgagctctgtt 9442267
Query: 499 gtaaatacatcgcaccagaggccactgtgacgccgctgtctcctcctcaccgtcctgccc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9442268 gtaaatacatcgcaccagaggccactgtgacgccgctgtctcctcctcaccgtcctgccc 9442327
Query: 559 gcccacgtgacaccggctccctatagacgggcatccccagatgtacaaaccctttcgtgt 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9442328 gcccacgtgacaccggctccctatagacgggcatccccagatgtacaaaccctttcgtgt 9442387
Query: 619 attcctgccaaaagcattggttttccagggcctttgaccaacatcagcctcaccagtcta 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9442388 attcctgccaaaagcattggttttccagggcctttgaccaacatcagcctcaccagtcta 9442447
Query: 679 agggtctgcagctcctgtcccttccctgtgcaggggtcgccccagcctgtcctccctgcc 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9442448 agggtctgcagctcctgtcccttccctgtgcaggggtcgccccagcctgtcctccctgcc 9442507
Query: 739 tggccctgggtgaagcctctaacagaactgccaccccgggccctactcctggcattaggc 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9442508 tggccctgggtgaagcctctaacagaactgccaccccgggccctactcctggcattaggc 9442567
Query: 799 agggccctgtgtgcaggcatttccctgctcagggacctccattccttgaggttgttcttg 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9442568 agggccctgtgtgcaggcatttccctgctcagggacctccattccttgaggttgttcttg 9442627
Query: 859 ccgcggtcccgccgttccttgtgggacggaccatgtacacagggtggtctttatttttcc 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9442628 ccgcggtcccgccgttccttgtgggacggaccatgtacacagggtggtctttatttttcc 9442687
Query: 919 tttataaataaacaccagtcaggtacctttttgtcccagtcttgctcttctaggcttgca 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9442688 tttataaataaacaccagtcaggtacctttttgtcccagtcttgctcttctaggcttgca 9442747
Query: 979 agtctcagagaggccaggatccaatccttangtacagggcagg 1021
|||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 9442748 agtctcagagaggccaggatcccatccttaggtacagggcagg 9442790
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 130 agaccaagaaagaccatccttacacttggagaattgaactggcaaaaacagaaaaatact 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9432261 agaccaagaaagaccatccttacacttggagaattgaactggcaaaaacagaaaaatact 9432320
Query: 190 gggatggctggttccgaggcttatccaatctctttcttagttgtcctattcctaaattgc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9432321 gggatggctggttccgaggcttatccaatctctttcttagttgtcctattcctaaattgc 9432380
Query: 250 tgctcttggctggt 263
||||||||||||||
Sbjct: 9432381 tgctcttggctggt 9432394
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 370 aggtcgctgaagcggttgccactttcctgatccggcacaggtttgcagagcccatcggcg 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9440855 aggtcgctgaagcggttgccactttcctgatccggcacaggtttgcagagcccatcggcg 9440914
Query: 430 gattccagtg 439
||||||||||
Sbjct: 9440915 gattccagtg 9440924
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 305 aggaaagttccagatgcaggtcttaccccagtgtggccacgcggtccatgaggatgcccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9439990 aggaaagttccagatgcaggtcttaccccagtgtggccacgcggtccatgaggatgcccc 9440049
Query: 365 agacaaggt 373
|||||||||
Sbjct: 9440050 agacaaggt 9440058
Score = 95.6 bits (48), Expect = 5e-17
Identities = 51/52 (98%)
Strand = Plus / Plus
Query: 261 ggtgttgatagattggataaagatctgactattggccaaatgcaaggaaagt 312
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9433246 ggtgttgatagattggataaagatctgactattggccaaatgcaaggtaagt 9433297
Score = 79.8 bits (40), Expect = 3e-12
Identities = 47/48 (97%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 15 aggaattaca-gtccagaaggctcaaaatctatagtggaaggaatcat 61
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 9425982 aggaattacaagtccagaaggctcaaaatctatagtggaaggaatcat 9426029
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,439,309
Number of extensions: 230
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 6
Length of query: 1021
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1000
Effective length of database: 2,808,413,156
Effective search space: 2808413156000
Effective search space used: 2808413156000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)