Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009051
(1026 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,504,774
Number of extensions: 1075587
Number of successful extensions: 3877
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3875
Number of HSP's successfully gapped: 0
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009051
(1026 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536626.1| PREDICTED: similar to MAK31-like protein [Canis... 196 2e-50
>ref|XP_536626.1| PREDICTED: similar to MAK31-like protein [Canis familiaris].
Length = 125
Score = 196 bits (499), Expect = 2e-50
Identities = 101/125 (80%), Positives = 102/125 (81%)
Frame = +3
Query: 447 MAGAGPTMLLREENXXXXXXXXXXXXXXXXXXXXXXPSARARQQLEALLNKTMRIRMTDG 626
MAGAGP MLLREEN P+ARARQQLEALLNKTMRIRMTDG
Sbjct: 1 MAGAGPAMLLREENGCCSRRQSSSSAGDSDGEREDSPAARARQQLEALLNKTMRIRMTDG 60
Query: 627 RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLA 806
RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLA
Sbjct: 61 RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLA 120
Query: 807 GPPYL 821
GPPYL
Sbjct: 121 GPPYL 125
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,914,343
Number of extensions: 1041994
Number of successful extensions: 4312
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4298
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009051
(1026 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131997.1| PREDICTED: LSM domain-containing protein 1-l... 199 2e-51
Alignment gi|XP_003132008.1| PREDICTED: LSM domain-containing protein 1-l... 199 2e-51
>ref|XP_003131997.1| PREDICTED: LSM domain-containing protein 1-like [Sus scrofa].
Length = 125
Score = 199 bits (507), Expect = 2e-51
Identities = 103/125 (82%), Positives = 103/125 (82%)
Frame = +3
Query: 447 MAGAGPTMLLREENXXXXXXXXXXXXXXXXXXXXXXPSARARQQLEALLNKTMRIRMTDG 626
MAGAGPTMLLREEN PSARARQQLEALLNKTMRIRMTDG
Sbjct: 1 MAGAGPTMLLREENGCCSRRQSSSSAGDSDGEREDSPSARARQQLEALLNKTMRIRMTDG 60
Query: 627 RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLA 806
RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLA
Sbjct: 61 RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLA 120
Query: 807 GPPYL 821
GPPYL
Sbjct: 121 GPPYL 125
>ref|XP_003132008.1| PREDICTED: LSM domain-containing protein 1-like [Sus scrofa].
Length = 125
Score = 199 bits (507), Expect = 2e-51
Identities = 103/125 (82%), Positives = 103/125 (82%)
Frame = +3
Query: 447 MAGAGPTMLLREENXXXXXXXXXXXXXXXXXXXXXXPSARARQQLEALLNKTMRIRMTDG 626
MAGAGPTMLLREEN PSARARQQLEALLNKTMRIRMTDG
Sbjct: 1 MAGAGPTMLLREENGCCSRRQSSSSAGDSDGEREDSPSARARQQLEALLNKTMRIRMTDG 60
Query: 627 RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLA 806
RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLA
Sbjct: 61 RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLA 120
Query: 807 GPPYL 821
GPPYL
Sbjct: 121 GPPYL 125
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,277,788
Number of extensions: 804153
Number of successful extensions: 2529
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2521
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009051
(1026 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084359.1| LSM domain-containing protein 1 [Mus musculus]. 192 4e-49
>ref|NP_084359.1| LSM domain-containing protein 1 [Mus musculus].
Length = 125
Score = 192 bits (488), Expect = 4e-49
Identities = 99/125 (79%), Positives = 101/125 (80%)
Frame = +3
Query: 447 MAGAGPTMLLREENXXXXXXXXXXXXXXXXXXXXXXPSARARQQLEALLNKTMRIRMTDG 626
MAGAGPTMLLREEN P+ RARQQLEALLNKTMRIRMTDG
Sbjct: 1 MAGAGPTMLLREENGCCSRRQSSSSAGDSDGEQEDSPATRARQQLEALLNKTMRIRMTDG 60
Query: 627 RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLA 806
RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESL+
Sbjct: 61 RTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLS 120
Query: 807 GPPYL 821
G PYL
Sbjct: 121 GGPYL 125
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,976,070
Number of extensions: 827227
Number of successful extensions: 3143
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3129
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009051
(1026 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115732.2| LSM domain-containing protein 1 [Homo sapiens]. 173 2e-43
>ref|NP_115732.2| LSM domain-containing protein 1 [Homo sapiens].
Length = 173
Score = 173 bits (439), Expect = 2e-43
Identities = 85/86 (98%), Positives = 85/86 (98%)
Frame = +3
Query: 564 RARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVL 743
RARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVL
Sbjct: 88 RARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVL 147
Query: 744 GLAMVPGHHIVSIEVQRESLAGPPYL 821
GLAMVPGHHIVSIEVQRESL GPPYL
Sbjct: 148 GLAMVPGHHIVSIEVQRESLTGPPYL 173
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,847,947
Number of extensions: 998499
Number of successful extensions: 3936
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3925
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009051
(1026 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1047 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1047 bits (528), Expect = 0.0
Identities = 528/528 (100%)
Strand = Plus / Minus
Query: 1 gtggtccgattccgacgttgaagtaattgagtggtgtcctccggagttccggggggagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55478574 gtggtccgattccgacgttgaagtaattgagtggtgtcctccggagttccggggggagga 55478515
Query: 61 aaagaccctccgttttaattttgagtggcctgggctatagggagtgcttgggacgtacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55478514 aaagaccctccgttttaattttgagtggcctgggctatagggagtgcttgggacgtacta 55478455
Query: 121 tctcgcgaggcagaaaaacaagggagtggggagtgcgattaagaaaaaaggtattctcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55478454 tctcgcgaggcagaaaaacaagggagtggggagtgcgattaagaaaaaaggtattctcgc 55478395
Query: 181 ttccttccagggttcctaaaggatatgtaagaaccgagagaggtgaaaacttctcgcgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55478394 ttccttccagggttcctaaaggatatgtaagaaccgagagaggtgaaaacttctcgcgat 55478335
Query: 241 atctgaggacatccggcgacctagacctcagcgagccgttcgccgaagcaggagacgctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55478334 atctgaggacatccggcgacctagacctcagcgagccgttcgccgaagcaggagacgctc 55478275
Query: 301 gcgagatctctgcagttgccgaggagacgaggaggggaggtgatctcgcgaaagaaaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55478274 gcgagatctctgcagttgccgaggagacgaggaggggaggtgatctcgcgaaagaaaaca 55478215
Query: 361 ggtcgggagcgctcgcgagatctcagaccccccggagccgaaaggttctcagcaagttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55478214 ggtcgggagcgctcgcgagatctcagaccccccggagccgaaaggttctcagcaagttga 55478155
Query: 421 agggcctggaggaggcccgcggacaaatggccggagctggaccaactatgctgctacgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55478154 agggcctggaggaggcccgcggacaaatggccggagctggaccaactatgctgctacgag 55478095
Query: 481 aggagaatggctgttgcagccggcgtcaaagcagctccagcgccgggg 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55478094 aggagaatggctgttgcagccggcgtcaaagcagctccagcgccgggg 55478047
Score = 1039 bits (524), Expect = 0.0
Identities = 527/528 (99%)
Strand = Plus / Plus
Query: 1 gtggtccgattccgacgttgaagtaattgagtggtgtcctccggagttccggggggagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55380085 gtggtccgattccgacgttgaagtaattgagtggtgtcctccggagttccggggggagga 55380144
Query: 61 aaagaccctccgttttaattttgagtggcctgggctatagggagtgcttgggacgtacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55380145 aaagaccctccgttttaattttgagtggcctgggctatagggagtgcttgggacgtacta 55380204
Query: 121 tctcgcgaggcagaaaaacaagggagtggggagtgcgattaagaaaaaaggtattctcgc 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 55380205 tctcgcgaggcagaaaaacaagggagtgtggagtgcgattaagaaaaaaggtattctcgc 55380264
Query: 181 ttccttccagggttcctaaaggatatgtaagaaccgagagaggtgaaaacttctcgcgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55380265 ttccttccagggttcctaaaggatatgtaagaaccgagagaggtgaaaacttctcgcgat 55380324
Query: 241 atctgaggacatccggcgacctagacctcagcgagccgttcgccgaagcaggagacgctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55380325 atctgaggacatccggcgacctagacctcagcgagccgttcgccgaagcaggagacgctc 55380384
Query: 301 gcgagatctctgcagttgccgaggagacgaggaggggaggtgatctcgcgaaagaaaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55380385 gcgagatctctgcagttgccgaggagacgaggaggggaggtgatctcgcgaaagaaaaca 55380444
Query: 361 ggtcgggagcgctcgcgagatctcagaccccccggagccgaaaggttctcagcaagttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55380445 ggtcgggagcgctcgcgagatctcagaccccccggagccgaaaggttctcagcaagttga 55380504
Query: 421 agggcctggaggaggcccgcggacaaatggccggagctggaccaactatgctgctacgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55380505 agggcctggaggaggcccgcggacaaatggccggagctggaccaactatgctgctacgag 55380564
Query: 481 aggagaatggctgttgcagccggcgtcaaagcagctccagcgccgggg 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55380565 aggagaatggctgttgcagccggcgtcaaagcagctccagcgccgggg 55380612
Score = 367 bits (185), Expect = 8e-99
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 527 ggactcagacggggagcgcgaagactcgccgtctgcgcgcgctaggcagcagctggaggc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55380801 ggactcagacggggagcgcgaagactcgccgtctgcgcgcgctaggcagcagctggaggc 55380860
Query: 587 gctgctcaacaagactatgcggattcgcatgacagatggacggacactggtcggttgctt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55380861 gctgctcaacaagactatgcggattcgcatgacagatggacggacactggtcggttgctt 55380920
Query: 647 cctctgcaccgaccgcgactgcaatgttatcctaggctcggcgcaggagttcctcaagcc 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55380921 cctctgcaccgaccgcgactgcaatgttatcctaggctcggcgcaggagttcctcaagcc 55380980
Query: 707 gtcgg 711
|||||
Sbjct: 55380981 gtcgg 55380985
Score = 367 bits (185), Expect = 8e-99
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 527 ggactcagacggggagcgcgaagactcgccgtctgcgcgcgctaggcagcagctggaggc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55477858 ggactcagacggggagcgcgaagactcgccgtctgcgcgcgctaggcagcagctggaggc 55477799
Query: 587 gctgctcaacaagactatgcggattcgcatgacagatggacggacactggtcggttgctt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55477798 gctgctcaacaagactatgcggattcgcatgacagatggacggacactggtcggttgctt 55477739
Query: 647 cctctgcaccgaccgcgactgcaatgttatcctaggctcggcgcaggagttcctcaagcc 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55477738 cctctgcaccgaccgcgactgcaatgttatcctaggctcggcgcaggagttcctcaagcc 55477679
Query: 707 gtcgg 711
|||||
Sbjct: 55477678 gtcgg 55477674
Score = 317 bits (160), Expect = 7e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 711 gattccttctctgccggggaaccccgtgtgctgggcctagctatggtacctggacaccac 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55381145 gattccttctctgccggggaaccccgtgtgctgggcctagctatggtacctggacaccac 55381204
Query: 771 atcgtttctattgaggtgcaaagagagagcctggcggggcctccctatctctgagcccga 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55381205 atcgtttctattgaggtgcaaagagagagcctggcggggcctccctatctctgagcccga 55381264
Query: 831 ccgcgcatgcctttcaaacttcattaaacctgtcactgac 870
||||||||||||||||||||||||||||||||||||||||
Sbjct: 55381265 ccgcgcatgcctttcaaacttcattaaacctgtcactgac 55381304
Score = 317 bits (160), Expect = 7e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 711 gattccttctctgccggggaaccccgtgtgctgggcctagctatggtacctggacaccac 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55477514 gattccttctctgccggggaaccccgtgtgctgggcctagctatggtacctggacaccac 55477455
Query: 771 atcgtttctattgaggtgcaaagagagagcctggcggggcctccctatctctgagcccga 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55477454 atcgtttctattgaggtgcaaagagagagcctggcggggcctccctatctctgagcccga 55477395
Query: 831 ccgcgcatgcctttcaaacttcattaaacctgtcactgac 870
||||||||||||||||||||||||||||||||||||||||
Sbjct: 55477394 ccgcgcatgcctttcaaacttcattaaacctgtcactgac 55477355
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,340,218
Number of extensions: 101
Number of successful extensions: 101
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 6
Length of query: 1026
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1005
Effective length of database: 2,808,413,156
Effective search space: 2822455221780
Effective search space used: 2822455221780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)