Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009068
(1370 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035584.1| polycomb protein EED [Bos taurus]. 468 e-152
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 57 5e-08
>ref|NP_001035584.1| polycomb protein EED [Bos taurus].
Length = 441
Score = 468 bits (1205), Expect(3) = e-152
Identities = 230/250 (92%), Positives = 230/250 (92%)
Frame = +3
Query: 480 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 659
MSEREVST PAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
Sbjct: 1 MSEREVSTVPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 60
Query: 660 NAPGRXXXXXXXXXXXXXXXXXXXVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 839
NAPGR VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
Sbjct: 61 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 120
Query: 840 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 1019
VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
Sbjct: 121 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 180
Query: 1020 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 1199
QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
Sbjct: 181 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 240
Query: 1200 SADYDLLGEK 1229
SADYDLLGEK
Sbjct: 241 SADYDLLGEK 250
Score = 74.3 bits (181), Expect(3) = e-152
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 1225 KKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 1326
+KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP
Sbjct: 249 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 282
Score = 36.6 bits (83), Expect(3) = e-152
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 1325 PNKTNRPFISQKIHF 1369
PNKTNRPFISQKIHF
Sbjct: 282 PNKTNRPFISQKIHF 296
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 56.6 bits (135), Expect = 5e-08
Identities = 29/88 (32%), Positives = 49/88 (55%)
Frame = +3
Query: 963 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 1142
L+A A + G RI + T +C+ GH I+++ F+P+ N LL+ S D R+W+ Q
Sbjct: 317 LIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQG-NRLLTGSSDKTARIWDAQ 375
Query: 1143 TDTLVAIFGGVEGHRDEVLSADYDLLGE 1226
T + + +EGH DE+ S ++ G+
Sbjct: 376 TGQCLQV---LEGHTDEIFSCAFNYKGD 400
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,105,314
Number of extensions: 1095779
Number of successful extensions: 3727
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3707
Number of HSP's successfully gapped: 4
Length of query: 456
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 350
Effective length of database: 14,174,046
Effective search space: 4960916100
Effective search space used: 4960916100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009068
(1370 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533985.2| PREDICTED: similar to embryonic ectoderm develo... 470 e-152
Alignment gi|XP_857750.1| PREDICTED: similar to embryonic ectoderm develo... 470 e-152
Alignment gi|XP_857706.1| PREDICTED: similar to embryonic ectoderm develo... 453 e-127
Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiar... 55 1e-07
>ref|XP_533985.2| PREDICTED: similar to embryonic ectoderm development isoform 1 [Canis
familiaris].
Length = 466
Score = 470 bits (1209), Expect(3) = e-152
Identities = 231/250 (92%), Positives = 231/250 (92%)
Frame = +3
Query: 480 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 659
MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
Sbjct: 1 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 60
Query: 660 NAPGRXXXXXXXXXXXXXXXXXXXVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 839
NAPGR VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
Sbjct: 61 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 120
Query: 840 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 1019
VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
Sbjct: 121 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 180
Query: 1020 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 1199
QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
Sbjct: 181 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 240
Query: 1200 SADYDLLGEK 1229
SADYDLLGEK
Sbjct: 241 SADYDLLGEK 250
Score = 74.3 bits (181), Expect(3) = e-152
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 1225 KKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 1326
+KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP
Sbjct: 249 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 282
Score = 36.6 bits (83), Expect(3) = e-152
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 1325 PNKTNRPFISQKIHF 1369
PNKTNRPFISQKIHF
Sbjct: 282 PNKTNRPFISQKIHF 296
>ref|XP_857750.1| PREDICTED: similar to embryonic ectoderm development isoform 6 [Canis
familiaris].
Length = 441
Score = 470 bits (1209), Expect(3) = e-152
Identities = 231/250 (92%), Positives = 231/250 (92%)
Frame = +3
Query: 480 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 659
MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
Sbjct: 1 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 60
Query: 660 NAPGRXXXXXXXXXXXXXXXXXXXVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 839
NAPGR VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
Sbjct: 61 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 120
Query: 840 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 1019
VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
Sbjct: 121 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 180
Query: 1020 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 1199
QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
Sbjct: 181 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 240
Query: 1200 SADYDLLGEK 1229
SADYDLLGEK
Sbjct: 241 SADYDLLGEK 250
Score = 74.3 bits (181), Expect(3) = e-152
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 1225 KKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 1326
+KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP
Sbjct: 249 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 282
Score = 36.6 bits (83), Expect(3) = e-152
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 1325 PNKTNRPFISQKIHF 1369
PNKTNRPFISQKIHF
Sbjct: 282 PNKTNRPFISQKIHF 296
>ref|XP_857706.1| PREDICTED: similar to embryonic ectoderm development isoform 5 [Canis
familiaris].
Length = 361
Score = 453 bits (1166), Expect = e-127
Identities = 223/242 (92%), Positives = 223/242 (92%)
Frame = +3
Query: 480 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 659
MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
Sbjct: 1 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 60
Query: 660 NAPGRXXXXXXXXXXXXXXXXXXXVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 839
NAPGR VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
Sbjct: 61 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 120
Query: 840 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 1019
VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
Sbjct: 121 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 180
Query: 1020 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 1199
QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
Sbjct: 181 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 240
Query: 1200 SA 1205
SA
Sbjct: 241 SA 242
>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris].
Length = 415
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/88 (31%), Positives = 49/88 (55%)
Frame = +3
Query: 963 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 1142
L+A A + G R+ + T +C+ GH I+++ F+P+ N LL+ S D R+W+ Q
Sbjct: 317 LIATASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQG-NRLLTGSADETARIWDAQ 375
Query: 1143 TDTLVAIFGGVEGHRDEVLSADYDLLGE 1226
T + + +EGH DE+ S ++ G+
Sbjct: 376 TGQCLQV---LEGHTDEIFSCAFNYKGD 400
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,110,737
Number of extensions: 1107291
Number of successful extensions: 4269
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4248
Number of HSP's successfully gapped: 8
Length of query: 456
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 350
Effective length of database: 15,340,888
Effective search space: 5369310800
Effective search space used: 5369310800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009068
(1370 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133751.2| PREDICTED: WD repeat-containing protein 69-l... 56 5e-08
>ref|XP_003133751.2| PREDICTED: WD repeat-containing protein 69-like [Sus scrofa].
Length = 271
Score = 55.8 bits (133), Expect = 5e-08
Identities = 29/88 (32%), Positives = 49/88 (55%)
Frame = +3
Query: 963 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 1142
L+A A + G R+ + T +CI GH I+++ F+P+ N LL+ S D R+W+ Q
Sbjct: 173 LIATASADGTARVFSAATRKCITKLEGHEGEISKISFNPQG-NRLLTGSADKTARIWDAQ 231
Query: 1143 TDTLVAIFGGVEGHRDEVLSADYDLLGE 1226
T + + +EGH DE+ S ++ G+
Sbjct: 232 TGQCLQV---LEGHTDEIFSCAFNYKGD 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,321,596
Number of extensions: 744485
Number of successful extensions: 2514
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2502
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 354
Effective length of database: 8,804,438
Effective search space: 3116771052
Effective search space used: 3116771052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009068
(1370 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068676.1| polycomb protein EED [Mus musculus]. 470 e-152
Alignment gi|NP_082001.2| WD repeat domain 69 [Mus musculus]. 59 9e-09
>ref|NP_068676.1| polycomb protein EED [Mus musculus].
Length = 441
Score = 470 bits (1209), Expect(3) = e-152
Identities = 231/250 (92%), Positives = 231/250 (92%)
Frame = +3
Query: 480 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 659
MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
Sbjct: 1 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 60
Query: 660 NAPGRXXXXXXXXXXXXXXXXXXXVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 839
NAPGR VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
Sbjct: 61 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 120
Query: 840 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 1019
VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
Sbjct: 121 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 180
Query: 1020 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 1199
QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
Sbjct: 181 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 240
Query: 1200 SADYDLLGEK 1229
SADYDLLGEK
Sbjct: 241 SADYDLLGEK 250
Score = 74.3 bits (181), Expect(3) = e-152
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 1225 KKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 1326
+KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP
Sbjct: 249 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 282
Score = 36.6 bits (83), Expect(3) = e-152
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 1325 PNKTNRPFISQKIHF 1369
PNKTNRPFISQKIHF
Sbjct: 282 PNKTNRPFISQKIHF 296
>ref|NP_082001.2| WD repeat domain 69 [Mus musculus].
Length = 310
Score = 58.9 bits (141), Expect = 9e-09
Identities = 32/97 (32%), Positives = 54/97 (55%)
Frame = +3
Query: 963 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 1142
L+A A + G R+ N T +C+ GH I+++ F+P+ N LL+ S D R+W++Q
Sbjct: 212 LIATASADGTARVYNATTRKCVTKLEGHEGEISKISFNPQG-NRLLTGSSDKTARIWDVQ 270
Query: 1143 TDTLVAIFGGVEGHRDEVLSADYDLLGEKNNVLWYGS 1253
T + + +EGH DE+ S ++ K N++ GS
Sbjct: 271 TGQCLQV---LEGHTDEIFSCAFNY---KGNIVITGS 301
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,219,024
Number of extensions: 918324
Number of successful extensions: 3299
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3277
Number of HSP's successfully gapped: 4
Length of query: 456
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 351
Effective length of database: 12,463,779
Effective search space: 4374786429
Effective search space used: 4374786429
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009068
(1370 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003788.2| polycomb protein EED isoform a [Homo sapiens]. 470 e-152
Alignment gi|NP_694536.1| polycomb protein EED isoform b [Homo sapiens]. 470 e-152
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 56 7e-08
>ref|NP_003788.2| polycomb protein EED isoform a [Homo sapiens].
Length = 441
Score = 470 bits (1209), Expect(3) = e-152
Identities = 231/250 (92%), Positives = 231/250 (92%)
Frame = +3
Query: 480 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 659
MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
Sbjct: 1 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 60
Query: 660 NAPGRXXXXXXXXXXXXXXXXXXXVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 839
NAPGR VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
Sbjct: 61 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 120
Query: 840 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 1019
VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
Sbjct: 121 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 180
Query: 1020 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 1199
QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
Sbjct: 181 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 240
Query: 1200 SADYDLLGEK 1229
SADYDLLGEK
Sbjct: 241 SADYDLLGEK 250
Score = 74.3 bits (181), Expect(3) = e-152
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 1225 KKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 1326
+KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP
Sbjct: 249 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 282
Score = 36.6 bits (83), Expect(3) = e-152
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 1325 PNKTNRPFISQKIHF 1369
PNKTNRPFISQKIHF
Sbjct: 282 PNKTNRPFISQKIHF 296
>ref|NP_694536.1| polycomb protein EED isoform b [Homo sapiens].
Length = 400
Score = 470 bits (1209), Expect(3) = e-152
Identities = 231/250 (92%), Positives = 231/250 (92%)
Frame = +3
Query: 480 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 659
MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
Sbjct: 1 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP 60
Query: 660 NAPGRXXXXXXXXXXXXXXXXXXXVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 839
NAPGR VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
Sbjct: 61 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR 120
Query: 840 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 1019
VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
Sbjct: 121 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 180
Query: 1020 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 1199
QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
Sbjct: 181 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 240
Query: 1200 SADYDLLGEK 1229
SADYDLLGEK
Sbjct: 241 SADYDLLGEK 250
Score = 74.3 bits (181), Expect(3) = e-152
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 1225 KKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 1326
+KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP
Sbjct: 249 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 282
Score = 36.6 bits (83), Expect(3) = e-152
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 1325 PNKTNRPFISQKIHF 1369
PNKTNRPFISQKIHF
Sbjct: 282 PNKTNRPFISQKIHF 296
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 56.2 bits (134), Expect = 7e-08
Identities = 33/97 (34%), Positives = 53/97 (54%)
Frame = +3
Query: 963 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 1142
L+A A + G RI + T +CI GH I+++ F+P+ N LL+ S D R+W+ Q
Sbjct: 317 LIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQG-NHLLTGSSDKTARIWDAQ 375
Query: 1143 TDTLVAIFGGVEGHRDEVLSADYDLLGEKNNVLWYGS 1253
T + + +EGH DE+ S ++ K N++ GS
Sbjct: 376 TGQCLQV---LEGHTDEIFSCAFNY---KGNIVITGS 406
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,188,039
Number of extensions: 1089009
Number of successful extensions: 4059
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4041
Number of HSP's successfully gapped: 7
Length of query: 456
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 350
Effective length of database: 14,802,980
Effective search space: 5181043000
Effective search space used: 5181043000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009068
(1370 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 609 e-171
>Sscrofa_Chr09
|| Length = 153670197
Score = 609 bits (307), Expect = e-171
Identities = 307/307 (100%)
Strand = Plus / Minus
Query: 288 tttttcagcagtgtggcggggtcgcacgcacgcccgcctcggcggctgggcgcggtttgc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22417251 tttttcagcagtgtggcggggtcgcacgcacgcccgcctcggcggctgggcgcggtttgc 22417192
Query: 348 gacagtggggggagcggtggaggtggcggcggcagtggcaactttgcggcaagctccggc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22417191 gacagtggggggagcggtggaggtggcggcggcagtggcaactttgcggcaagctccggc 22417132
Query: 408 cgggcttgcttgacggcggtgtggcggaggccccgccctaggcggcaggaacctggaggg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22417131 cgggcttgcttgacggcggtgtggcggaggccccgccctaggcggcaggaacctggaggg 22417072
Query: 468 aggcggaggaatatgtccgagagggaagtgtcgacagcgccggcgggaacagacatgcct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22417071 aggcggaggaatatgtccgagagggaagtgtcgacagcgccggcgggaacagacatgcct 22417012
Query: 528 gcggccaagaagcagaagctgagcagcgacgagaacagcaacccggacctctctggagac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22417011 gcggccaagaagcagaagctgagcagcgacgagaacagcaacccggacctctctggagac 22416952
Query: 588 gagaatg 594
|||||||
Sbjct: 22416951 gagaatg 22416945
Score = 504 bits (254), Expect = e-140
Identities = 254/254 (100%)
Strand = Plus / Minus
Query: 1 actttcgagtccttgcagcgggtcggggatcgaaggattgggccaattgcgactgaaacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22417537 actttcgagtccttgcagcgggtcggggatcgaaggattgggccaattgcgactgaaacg 22417478
Query: 61 tctttggaaagaggaagggggtgagggggcatccttctgagttccgcctctcttttttcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22417477 tctttggaaagaggaagggggtgagggggcatccttctgagttccgcctctcttttttcg 22417418
Query: 121 acgcggtcgtggggaaggggaacgtacgaaatactgcccttgaaagccaacggatcacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22417417 acgcggtcgtggggaaggggaacgtacgaaatactgcccttgaaagccaacggatcacac 22417358
Query: 181 ctctccgtgcaaactgccgggagggcggcgggaaaagggcaagacgggagtgggtaaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22417357 ctctccgtgcaaactgccgggagggcggcgggaaaagggcaagacgggagtgggtaaagg 22417298
Query: 241 gaaggatccaggaa 254
||||||||||||||
Sbjct: 22417297 gaaggatccaggaa 22417284
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 594 gatgatgctgtcagtatagaaagtggtacaaacactgaacgccctgatacacctacaaat 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22410483 gatgatgctgtcagtatagaaagtggtacaaacactgaacgccctgatacacctacaaat 22410424
Query: 654 acgccaaacgcgcctggaaggaaaagttggggaaagggaaaatggaagtcaaagaaatgc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22410423 acgccaaacgcgcctggaaggaaaagttggggaaagggaaaatggaagtcaaagaaatgc 22410364
Query: 714 aaatattctttcaaatgtgtaaatagtctcaagg 747
||||||||||||||||||||||||||||||||||
Sbjct: 22410363 aaatattctttcaaatgtgtaaatagtctcaagg 22410330
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 906 gctgatgaaaacttttatacttgtgcatggacatatgatagcaatacaagccatcctctg 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22403360 gctgatgaaaacttttatacttgtgcatggacatatgatagcaatacaagccatcctctg 22403301
Query: 966 ctggctgtagctggatccagaggcataattagaataattaatcccataacaatgcaatgc 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22403300 ctggctgtagctggatccagaggcataattagaataattaatcccataacaatgcaatgc 22403241
Query: 1026 ataaag 1031
||||||
Sbjct: 22403240 ataaag 22403235
Score = 204 bits (103), Expect = 9e-50
Identities = 110/111 (99%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 1232 taatgtcctgtggtatggatcactctcttaaactttggaggattaattcaaagagaatga 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22397101 taatgtcctgtggtatggatcactctcttaaactttggaggattaattcaaagagaatga 22397042
Query: 1292 tgaatgcaattaaggaatcttatgattataaccccaaataaaactaacagg 1342
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 22397041 tgaatgcaattaaggaatcttatgattataa-cccaaataaaactaacagg 22396992
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 745 aggaagatcataatcaaccattgttcggagttcaatttaactggcacagtaaagaaggag 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22407783 aggaagatcataatcaaccattgttcggagttcaatttaactggcacagtaaagaaggag 22407724
Query: 805 atccattagtgtttgcaactgtaggaagcaacagagt 841
|||||||||||||||||||||||||||||||||||||
Sbjct: 22407723 atccattagtgtttgcaactgtaggaagcaacagagt 22407687
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 1112 agatcatgctttacgcttatggaatatccaaacggacactctggtggcaatatttggagg 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22399532 agatcatgctttacgcttatggaatatccaaacggacactctggtggcaatatttggagg 22399473
Query: 1172 tgtagaagggcacagagatgaagttctaagtgctg 1206
|||||||||||||||||||||||||||||||||||
Sbjct: 22399472 tgtagaagggcacagagatgaagttctaagtgctg 22399438
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 1030 agcactatgttggccatggaaatgctatcaatgagctgaaattccatccaagagatccaa 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22402381 agcactatgttggccatggaaatgctatcaatgagctgaaattccatccaagagatccaa 22402322
Query: 1090 atcttcttctgtcagtaagtaaag 1113
||||||||||||||||||||||||
Sbjct: 22402321 atcttcttctgtcagtaagtaaag 22402298
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 840 gttaccttatatgaatgtcactcacaaggagaaatccggttgttgcaatcttacgtggat 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22404468 gttaccttatatgaatgtcactcacaaggagaaatccggttgttgcaatcttacgtggat 22404409
Query: 900 gctgatg 906
|||||||
Sbjct: 22404408 gctgatg 22404402
Score = 61.9 bits (31), Expect = 9e-07
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1339 caggccatttatttctcagaaaattcacttt 1369
|||||||||||||||||||||||||||||||
Sbjct: 22394716 caggccatttatttctcagaaaattcacttt 22394686
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,129,063
Number of extensions: 295
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 10
Length of query: 1370
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1349
Effective length of database: 2,808,413,156
Effective search space: 3788549347444
Effective search space used: 3788549347444
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)