Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009074
(1140 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070449.1| transmembrane 4 L6 family member 20 [Bos tau... 304 1e-82
>ref|NP_001070449.1| transmembrane 4 L6 family member 20 [Bos taurus].
Length = 230
Score = 304 bits (778), Expect = 1e-82
Identities = 150/231 (64%), Positives = 172/231 (74%), Gaps = 4/231 (1%)
Frame = +3
Query: 39 MTCCEGWTACNGFSXXXXXXXXXXXNAIPFVVNLVDEDEVFQNPISCFERWFPGIVGAGL 218
MTCCEGWT+CNGFS NAIP ++N VDED+ F+NPISCFE WFPGI+GAG+
Sbjct: 1 MTCCEGWTSCNGFSLLVLLLLGVTLNAIPLILNFVDEDQFFENPISCFEWWFPGIIGAGV 60
Query: 219 MAIPATTMSLAARKRACCNNKSGMFLSSLLNVITVIGGGYCLLVSFQALWEGPLICNSES 398
MAIPATTMSLAARKRACCNNK+GMFLSSLLN ITVIG YCLLVS QAL EGPLICNS+S
Sbjct: 61 MAIPATTMSLAARKRACCNNKTGMFLSSLLNAITVIGAAYCLLVSIQALAEGPLICNSQS 120
Query: 399 NSTLSCEISLRNLTVHHLDSLNLQWFFNDSCVASTDFNNPYINDTAIRN----GLNFDSI 566
N+T SCE SL+NLT ++ +S +LQWFF DSCV TD NNP I +T N L+F+SI
Sbjct: 121 NTTSSCEFSLKNLTANYKESFDLQWFFEDSCVPHTDSNNPSITNTTANNWRVYNLHFNSI 180
Query: 567 ENKHRIIHFSVYXXXXXXXXXXXXXXXSQILIGFLGCLCDGVSKPRRNQIV 719
EN+HRIIHFSV+ SQI+IGF GCLC GVS R+QIV
Sbjct: 181 ENQHRIIHFSVFLGLLLVGILEILFGLSQIIIGFFGCLCGGVSN-GRSQIV 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,435,289
Number of extensions: 1098761
Number of successful extensions: 3078
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3074
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,240,222
Effective search space: 3930301272
Effective search space used: 3930301272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009074
(1140 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852211.1| PREDICTED: similar to transmembrane 4 L six fam... 273 3e-73
>ref|XP_852211.1| PREDICTED: similar to transmembrane 4 L six family member 20 [Canis
familiaris].
Length = 229
Score = 273 bits (697), Expect = 3e-73
Identities = 137/231 (59%), Positives = 161/231 (69%), Gaps = 4/231 (1%)
Frame = +3
Query: 39 MTCCEGWTACNGFSXXXXXXXXXXXNAIPFVVNLVDEDEVFQNPISCFERWFPGIVGAGL 218
MTCCEGWT+CNGFS NAIP +VN VDE + F NPISCFE WFPGI+GAGL
Sbjct: 1 MTCCEGWTSCNGFSLLVLLLFGIVLNAIPLIVNFVDEGQFFHNPISCFEWWFPGIIGAGL 60
Query: 219 MAIPATTMSLAARKRACCNNKSGMFLSSLLNVITVIGGGYCLLVSFQALWEGPLICNSES 398
M IPA TMSLAARKRACCNN++GM LSSLLNVIT+IG YC+LVS AL EGPLICNSE
Sbjct: 61 MVIPAATMSLAARKRACCNNRTGMLLSSLLNVITIIGAVYCILVSIHALIEGPLICNSEG 120
Query: 399 NSTLSCEISLRNLTVHHLDSLNLQWFFNDSCVASTDFNNPYINDTA----IRNGLNFDSI 566
NST +CE S NL+ H + NLQWF+ +SC+A TD+ N +N + L+F+S
Sbjct: 121 NSTSNCEFSFSNLSDTHPEFFNLQWFYKESCIAPTDYTNLTVNSIMPSGWREHSLHFNSK 180
Query: 567 ENKHRIIHFSVYXXXXXXXXXXXXXXXSQILIGFLGCLCDGVSKPRRNQIV 719
ENKHR IH +V+ SQI+IGFLGCLC GV+K RRN+IV
Sbjct: 181 ENKHRTIHLTVFLGLLLVGILELLVGFSQIVIGFLGCLC-GVTK-RRNRIV 229
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,173,657
Number of extensions: 1121860
Number of successful extensions: 3188
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3184
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 276
Effective length of database: 15,407,560
Effective search space: 4252486560
Effective search space used: 4252486560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009074
(1140 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133742.1| PREDICTED: transmembrane 4 L6 family member ... 410 e-115
>ref|XP_003133742.1| PREDICTED: transmembrane 4 L6 family member 20-like [Sus scrofa].
Length = 227
Score = 410 bits (1053), Expect = e-115
Identities = 199/227 (87%), Positives = 201/227 (88%)
Frame = +3
Query: 39 MTCCEGWTACNGFSXXXXXXXXXXXNAIPFVVNLVDEDEVFQNPISCFERWFPGIVGAGL 218
MTCCEGWTACNGFS NAIPFVVNLVDEDEVFQNPISCFERWFPGIVGAGL
Sbjct: 1 MTCCEGWTACNGFSLLVLLLLGVILNAIPFVVNLVDEDEVFQNPISCFERWFPGIVGAGL 60
Query: 219 MAIPATTMSLAARKRACCNNKSGMFLSSLLNVITVIGGGYCLLVSFQALWEGPLICNSES 398
MAIPATTMSLAARKRACCNNKSGMFLSSLLNVITVIGGGYCLLVSFQALWEGPLICNS+S
Sbjct: 61 MAIPATTMSLAARKRACCNNKSGMFLSSLLNVITVIGGGYCLLVSFQALWEGPLICNSQS 120
Query: 399 NSTLSCEISLRNLTVHHLDSLNLQWFFNDSCVASTDFNNPYINDTAIRNGLNFDSIENKH 578
NSTLSCEISLRNLTVHHLDSLNLQWFFNDSCVASTDFNNPYINDTAIRNGLNFDS+ENKH
Sbjct: 121 NSTLSCEISLRNLTVHHLDSLNLQWFFNDSCVASTDFNNPYINDTAIRNGLNFDSLENKH 180
Query: 579 RIIHFSVYXXXXXXXXXXXXXXXSQILIGFLGCLCDGVSKPRRNQIV 719
RIIHFSVY SQILIGFLGCLCDGVSKPRRNQIV
Sbjct: 181 RIIHFSVYLGLLLVGFLEILFGLSQILIGFLGCLCDGVSKPRRNQIV 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,301,404
Number of extensions: 701950
Number of successful extensions: 1986
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1981
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 279
Effective length of database: 8,829,335
Effective search space: 2463384465
Effective search space used: 2463384465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009074
(1140 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079729.1| transmembrane 4 L6 family member 20 [Mus muscul... 273 1e-73
>ref|NP_079729.1| transmembrane 4 L6 family member 20 [Mus musculus].
Length = 226
Score = 273 bits (699), Expect = 1e-73
Identities = 138/228 (60%), Positives = 166/228 (72%), Gaps = 1/228 (0%)
Frame = +3
Query: 39 MTCCEGWTACNGFSXXXXXXXXXXXNAIPFVVNLVDEDEVFQNPISCFERWFPGIVGAGL 218
MTCCEGWT+CNGFS N IP ++LV+ D QNPISC+E WFPGI+GAGL
Sbjct: 1 MTCCEGWTSCNGFSLLILILLGVVINCIPLGISLVEADSTSQNPISCYEWWFPGIIGAGL 60
Query: 219 MAIPATTMSLAARKRACCNNKSGMFLSSLLNVITVIGGGYCLLVSFQALWEGPLICNSES 398
MAIPATTMSLAARKRACCNNK+GMFLSSL +VITV+G YC+LVS QAL EGPLICN+++
Sbjct: 61 MAIPATTMSLAARKRACCNNKTGMFLSSLFSVITVVGAVYCMLVSLQALLEGPLICNTQA 120
Query: 399 NSTLSCEISLRNLTVHHLDSLNLQWFFNDSCVASTDFNNPYINDTAIRNGL-NFDSIENK 575
NST++CE SL+NL+ +S NL WFFN +CV+ TDF NP IN+ + N +S E++
Sbjct: 121 NSTVTCEFSLKNLSKFDPESFNLLWFFNGTCVSPTDFKNPTINNMVSNWKIPNSNSEEDR 180
Query: 576 HRIIHFSVYXXXXXXXXXXXXXXXSQILIGFLGCLCDGVSKPRRNQIV 719
HRI HFSV+ SQILIGFLGCLC GVS+ RR+QIV
Sbjct: 181 HRIFHFSVFMSLLLVGILELLFGLSQILIGFLGCLC-GVSQ-RRSQIV 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,998,040
Number of extensions: 943284
Number of successful extensions: 2605
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2601
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 277
Effective length of database: 12,523,851
Effective search space: 3469106727
Effective search space used: 3469106727
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009074
(1140 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079071.2| transmembrane 4 L6 family member 20 [Homo sapie... 287 1e-77
>ref|NP_079071.2| transmembrane 4 L6 family member 20 [Homo sapiens].
Length = 229
Score = 287 bits (734), Expect = 1e-77
Identities = 144/231 (62%), Positives = 168/231 (72%), Gaps = 4/231 (1%)
Frame = +3
Query: 39 MTCCEGWTACNGFSXXXXXXXXXXXNAIPFVVNLVDEDEVFQNPISCFERWFPGIVGAGL 218
MTCCEGWT+CNGFS NAIP +V+LV+ED+ QNPISCFE WFPGI+GAGL
Sbjct: 1 MTCCEGWTSCNGFSLLVLLLLGVVLNAIPLIVSLVEEDQFSQNPISCFEWWFPGIIGAGL 60
Query: 219 MAIPATTMSLAARKRACCNNKSGMFLSSLLNVITVIGGGYCLLVSFQALWEGPLICNSES 398
MAIPATTMSL ARKRACCNN++GMFLSSL +VITVIG YC+L+S QAL +GPL+CNS S
Sbjct: 61 MAIPATTMSLTARKRACCNNRTGMFLSSLFSVITVIGALYCMLISIQALLKGPLMCNSPS 120
Query: 399 NSTLSCEISLRNLTVHHLDSLNLQWFFNDSCVASTDFNNPYINDTAI----RNGLNFDSI 566
NS +CE SL+N++ H +S NLQWFFNDSC T FN P NDT + +FDS
Sbjct: 121 NSNANCEFSLKNISDIHPESFNLQWFFNDSCAPPTGFNKPTSNDTMASGWRASSFHFDSE 180
Query: 567 ENKHRIIHFSVYXXXXXXXXXXXXXXXSQILIGFLGCLCDGVSKPRRNQIV 719
ENKHR+IHFSV+ SQI+IGFLGCLC GVSK RR+QIV
Sbjct: 181 ENKHRLIHFSVFLGLLLVGILEVLFGLSQIVIGFLGCLC-GVSK-RRSQIV 229
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,444,779
Number of extensions: 1109696
Number of successful extensions: 3086
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3081
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,868,908
Effective search space: 4103818608
Effective search space used: 4103818608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009074
(1140 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 894 0.0
Sscrofa_Chr09 66 5e-08
Sscrofa_ChrX 64 2e-07
Sscrofa_Chr14 64 2e-07
Sscrofa_Chr05 64 2e-07
Sscrofa_Chr12 60 3e-06
Sscrofa_Chr01 60 3e-06
>Sscrofa_Chr15
|| Length = 157681621
Score = 894 bits (451), Expect = 0.0
Identities = 457/459 (99%)
Strand = Plus / Minus
Query: 440 tgtccatcatctagactccctcaatctgcagtggttcttcaatgattcttgtgttgcttc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142610196 tgtccatcatctagactccctcaatctgcagtggttcttcaatgattcttgtgttgcttc 142610137
Query: 500 gacggatttcaataatccctacatcaatgacacagcgatccgtaacggcttaaatttcga 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142610136 gacggatttcaataatccctacatcaatgacacagcgatccgtaacggcttaaatttcga 142610077
Query: 560 ctctatagaaaacaaacacaggattatccacttctcagtgtatctaggtctactgcttgt 619
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142610076 ctctctagaaaacaaacacaggattatccacttctcagtgtatctaggtctactgcttgt 142610017
Query: 620 gggctttcttgagatcctgtttgggctcagtcagatactcattggcttccttggctgtct 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142610016 gggctttcttgagatcctgtttgggctcagtcagatactcattggcttccttggctgtct 142609957
Query: 680 gtgtgatggggtctcaaagccaagaagaaaccagattgtgtagctaaagaataaaatgga 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142609956 gtgtgatggggtctcaaagccaagaagaaaccagattgtgtagctaaagaataaaatgga 142609897
Query: 740 agagtccccgctgtggcccaatgggatcggtggtgtgtctgcaccaggacgcaagtttga 799
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 142609896 agagtccccgctgtggcccaatgggatcggtggtgtgtctgcaccaggacgcaggtttga 142609837
Query: 800 ttcccaggcgggcaaagttggttaaagtatctggcgttgcagctggtcacaactgtggcc 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142609836 ttcccaggcgggcaaagttggttaaagtatctggcgttgcagctggtcacaactgtggcc 142609777
Query: 860 ccaatctgatcctctgcccagaacatataccatggagtg 898
|||||||||||||||||||||||||||||||||||||||
Sbjct: 142609776 ccaatctgatcctctgcccagaacatataccatggagtg 142609738
Score = 440 bits (222), Expect = e-121
Identities = 222/222 (100%)
Strand = Plus / Minus
Query: 1 cactttgccaggggttctgcttgaaccagggggtgaccatgacctgctgtgaaggctgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142619980 cactttgccaggggttctgcttgaaccagggggtgaccatgacctgctgtgaaggctgga 142619921
Query: 61 cagcctgcaatggattcagcctgctggttctactgctgctgggagtcattctcaacgcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142619920 cagcctgcaatggattcagcctgctggttctactgctgctgggagtcattctcaacgcaa 142619861
Query: 121 tacctttcgtggtcaacttggttgatgaagatgaagtttttcaaaaccccatctcttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142619860 tacctttcgtggtcaacttggttgatgaagatgaagtttttcaaaaccccatctcttgct 142619801
Query: 181 ttgagcggtggttccccggaattgtcggcgcaggtctgatgg 222
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142619800 ttgagcggtggttccccggaattgtcggcgcaggtctgatgg 142619759
Score = 295 bits (149), Expect = 3e-77
Identities = 152/153 (99%)
Strand = Plus / Minus
Query: 287 gatgtttctttcgtcacttctgaatgtgatcacagtcattggtggcgggtactgcctgct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142611852 gatgtttctttcgtcacttctgaatgtgatcacagtcattggtggcgggtactgcctgct 142611793
Query: 347 ggtgtctttccaggctctgtgggaaggccctctcatttgtaactctgaaagcaacagcac 406
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 142611792 ggtgtctttccaggctctgtgggaaggccctctcatttgtaactctcaaagcaacagcac 142611733
Query: 407 tctcagctgtgaaatttctttacgaaacctaac 439
|||||||||||||||||||||||||||||||||
Sbjct: 142611732 tctcagctgtgaaatttctttacgaaacctaac 142611700
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 221 ggccattcctgcaacgacaatgtccttggcagcgagaaaaagagcatgctgcaacaacaa 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142613643 ggccattcctgcaacgacaatgtccttggcagcgagaaaaagagcatgctgcaacaacaa 142613584
Query: 281 gagcggg 287
|||||||
Sbjct: 142613583 gagcggg 142613577
>Sscrofa_Chr09
|| Length = 153670197
Score = 65.9 bits (33), Expect = 5e-08
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 746 cccgctgtggcccaatgggatcggtggtgtgtctgca 782
||||||||||| |||||||||||||||||||||||||
Sbjct: 46683188 cccgctgtggcacaatgggatcggtggtgtgtctgca 46683224
>Sscrofa_ChrX
|| Length = 144288218
Score = 63.9 bits (32), Expect = 2e-07
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 819 ggttaaagtatctggcgttgcagctggtcacaactgtggc 858
|||||||| |||||||||||| ||||||||||||||||||
Sbjct: 16451620 ggttaaaggatctggcgttgctgctggtcacaactgtggc 16451581
>Sscrofa_Chr14
|| Length = 153851969
Score = 63.9 bits (32), Expect = 2e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 780 gcaccaggacgcaagtttgattcccaggcgggcaaagttggttaaagtatctggcgttgc 839
|||||||||| || ||||||||||||| | |||||||| |||||||| ||| ||||||||
Sbjct: 29323645 gcaccaggacacaggtttgattcccagcccggcaaagtgggttaaaggatccggcgttgc 29323704
>Sscrofa_Chr05
|| Length = 111506441
Score = 63.9 bits (32), Expect = 2e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 780 gcaccaggacgcaagtttgattcccaggcgggcaaagttggttaaagtatctggcgttgc 839
|||||||||| |||||||||| ||||| | |||| ||| |||||||| ||||||||||||
Sbjct: 34231271 gcaccaggacacaagtttgatccccagcctggcacagtgggttaaaggatctggcgttgc 34231330
>Sscrofa_Chr12
|| Length = 63588571
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 741 gagtccccgctgtggcccaatgggatcggtggtgtgtctgca 782
|||| ||||||||||| |||||||||||||||||| ||||||
Sbjct: 39568608 gagttcccgctgtggcacaatgggatcggtggtgtctctgca 39568649
>Sscrofa_Chr01
|| Length = 315321322
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 741 gagtccccgctgtggcccaatgggatcggtggtgtgtctgca 782
|||| ||||||||||| ||||||||| |||||||||||||||
Sbjct: 16797298 gagttcccgctgtggctcaatgggattggtggtgtgtctgca 16797257
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 741 gagtccccgctgtggcccaatgggatcggtggtgtgtctgca 782
|||| ||| |||||||||||||||||||||||||| ||||||
Sbjct: 37105971 gagttcccactgtggcccaatgggatcggtggtgtctctgca 37106012
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 741 gagtccccgctgtggcccaatgggatcggtggtgtgtctgca 782
|||||||| ||||||| |||||||||||||||||| ||||||
Sbjct: 306763618 gagtccccactgtggcacaatgggatcggtggtgtctctgca 306763659
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,981,917
Number of extensions: 1320
Number of successful extensions: 1320
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1319
Number of HSP's successfully gapped: 13
Length of query: 1140
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1119
Effective length of database: 2,808,413,156
Effective search space: 3142614321564
Effective search space used: 3142614321564
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)