Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009075
(1063 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033773.1| elongator complex protein 4 [Bos taurus]. 490 e-138
>ref|NP_001033773.1| elongator complex protein 4 [Bos taurus].
Length = 423
Score = 490 bits (1261), Expect = e-138
Identities = 250/307 (81%), Positives = 261/307 (85%)
Frame = +2
Query: 29 MAAVAXXXXXXXXXXXXVAAASKNNVTSFQRRGPRASGSDSGYSRLVSIAGTRPSVRNGQ 208
MAA VAAAS NNVTSFQRRGPRASG+DSG SRLVSIAGTRPSVRNGQ
Sbjct: 1 MAAAGTCGTGTRSTGSMVAAASTNNVTSFQRRGPRASGADSGCSRLVSIAGTRPSVRNGQ 60
Query: 209 LLVSTGLPALDQXXXXXXXXXXXXXIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE 388
LLVSTGLPALDQ IEEDKYNIYSPLLFKYFLAEGIV+GH LLVASAKE
Sbjct: 61 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVSGHALLVASAKE 120
Query: 389 DPADILQELPAPLLDDNCKKEFDEDVHNHKTPESNIKMKIAWRYQLLPKMEAGPVSSSRF 568
DPADILQ+LPAPL+DD+ KKE DEDV +HK E +IKMKIAWRYQLLPKMEAGPVSSSRF
Sbjct: 121 DPADILQKLPAPLIDDSYKKECDEDVCSHKM-EPDIKMKIAWRYQLLPKMEAGPVSSSRF 179
Query: 569 GHYYDLSKRIPQELIEASKWHRFFLPEKISSTFNVEPCSLTHGYKRLLQFIQNIIYEEGF 748
GHYYD+SKRIPQELIE SKWH FFLPEKISS FNVE CSLT GY +LLQFIQNIIY+EGF
Sbjct: 180 GHYYDISKRIPQELIETSKWHGFFLPEKISSAFNVESCSLTPGYMKLLQFIQNIIYKEGF 239
Query: 749 DGCNPQKKQKNILRIGIQSLGSPLWGDDICCTENCDNSHSLTKFLYILRGLLRASLSACI 928
DG NPQKKQKNILRIGIQ+LGSPLWGDDICCTENCD SHSLTKFLYILRGLLR SLSACI
Sbjct: 240 DGSNPQKKQKNILRIGIQNLGSPLWGDDICCTENCDTSHSLTKFLYILRGLLRTSLSACI 299
Query: 929 INMPTHL 949
I MPTHL
Sbjct: 300 ITMPTHL 306
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,774,575
Number of extensions: 991190
Number of successful extensions: 2854
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2853
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009075
(1063 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540560.2| PREDICTED: similar to elongation protein 4 homo... 503 e-142
>ref|XP_540560.2| PREDICTED: similar to elongation protein 4 homolog [Canis
familiaris].
Length = 427
Score = 503 bits (1294), Expect = e-142
Identities = 246/289 (85%), Positives = 258/289 (89%)
Frame = +2
Query: 83 AAASKNNVTSFQRRGPRASGSDSGYSRLVSIAGTRPSVRNGQLLVSTGLPALDQXXXXXX 262
AA KNNVTSFQR+GPRAS DSG +RLVSIAGTRPSVRNGQLLVSTGLPALDQ
Sbjct: 23 AAGGKNNVTSFQRKGPRASVPDSGCARLVSIAGTRPSVRNGQLLVSTGLPALDQLLGGGL 82
Query: 263 XXXXXXXIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPADILQELPAPLLDDNC 442
IEEDKYNIYS LLFKYFLAEG++NGHTLLVASAKEDPADILQELPAPLLDDNC
Sbjct: 83 AVGTVLLIEEDKYNIYSSLLFKYFLAEGVINGHTLLVASAKEDPADILQELPAPLLDDNC 142
Query: 443 KKEFDEDVHNHKTPESNIKMKIAWRYQLLPKMEAGPVSSSRFGHYYDLSKRIPQELIEAS 622
KK+FDEDV NHKTPESNIKMKIAWRYQLLPKME GPV SSRFGHYYDLSKR+PQELIE S
Sbjct: 143 KKDFDEDVGNHKTPESNIKMKIAWRYQLLPKMEPGPV-SSRFGHYYDLSKRMPQELIETS 201
Query: 623 KWHRFFLPEKISSTFNVEPCSLTHGYKRLLQFIQNIIYEEGFDGCNPQKKQKNILRIGIQ 802
KWH FF PEK+S T N+EPCSLTHGY +LLQFIQN+IYEEGFDG NPQKKQKNILRIGIQ
Sbjct: 202 KWHGFFFPEKLSPTLNIEPCSLTHGYIKLLQFIQNVIYEEGFDGSNPQKKQKNILRIGIQ 261
Query: 803 SLGSPLWGDDICCTENCDNSHSLTKFLYILRGLLRASLSACIINMPTHL 949
+LGSPLWGDDICCTENCDNSHSLTKFLY+LRGLLR SLSACII MPTHL
Sbjct: 262 NLGSPLWGDDICCTENCDNSHSLTKFLYVLRGLLRTSLSACIITMPTHL 310
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,627,982
Number of extensions: 1027146
Number of successful extensions: 2743
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2742
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009075
(1063 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122940.2| PREDICTED: elongator complex protein 4, part... 453 e-128
Alignment gi|XP_003353968.1| PREDICTED: elongator complex protein 4-like,... 189 3e-48
>ref|XP_003122940.2| PREDICTED: elongator complex protein 4, partial [Sus scrofa].
Length = 337
Score = 453 bits (1166), Expect = e-128
Identities = 218/220 (99%), Positives = 218/220 (99%)
Frame = +2
Query: 290 EDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPADILQELPAPLLDDNCKKEFDEDVH 469
EDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPADILQELPAPLLDDNCKKEFDEDVH
Sbjct: 1 EDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPADILQELPAPLLDDNCKKEFDEDVH 60
Query: 470 NHKTPESNIKMKIAWRYQLLPKMEAGPVSSSRFGHYYDLSKRIPQELIEASKWHRFFLPE 649
NHKTPESNIKMKIAWRYQLLPKMEAGPVSSSRFGHYYDLSKRIPQELIEASKWHRFFLPE
Sbjct: 61 NHKTPESNIKMKIAWRYQLLPKMEAGPVSSSRFGHYYDLSKRIPQELIEASKWHRFFLPE 120
Query: 650 KISSTFNVEPCSLTHGYKRLLQFIQNIIYEEGFDGCNPQKKQKNILRIGIQSLGSPLWGD 829
KISSTFNVEPCSLTHGYKRLLQFIQNIIYEEGFDG NPQKKQKNILRIGIQSLGSPLWGD
Sbjct: 121 KISSTFNVEPCSLTHGYKRLLQFIQNIIYEEGFDGSNPQKKQKNILRIGIQSLGSPLWGD 180
Query: 830 DICCTENCDNSHSLTKFLYILRGLLRASLSACIINMPTHL 949
DICCTENCDNSHSLTKFLYILRGLLRASLSACII MPTHL
Sbjct: 181 DICCTENCDNSHSLTKFLYILRGLLRASLSACIITMPTHL 220
>ref|XP_003353968.1| PREDICTED: elongator complex protein 4-like, partial [Sus scrofa].
Length = 127
Score = 189 bits (479), Expect = 3e-48
Identities = 102/127 (80%), Positives = 102/127 (80%)
Frame = +2
Query: 29 MAAVAXXXXXXXXXXXXVAAASKNNVTSFQRRGPRASGSDSGYSRLVSIAGTRPSVRNGQ 208
MAAVA VAAASKNNVTSFQRRGPRASGSDSGYSRLVSIAGTRPSVRNGQ
Sbjct: 1 MAAVATCGTCTGSPGSTVAAASKNNVTSFQRRGPRASGSDSGYSRLVSIAGTRPSVRNGQ 60
Query: 209 LLVSTGLPALDQXXXXXXXXXXXXXIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE 388
LLVSTGLPALDQ IEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
Sbjct: 61 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE 120
Query: 389 DPADILQ 409
DPADILQ
Sbjct: 121 DPADILQ 127
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,916,051
Number of extensions: 632455
Number of successful extensions: 1636
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1636
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009075
(1063 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076365.2| elongator complex protein 4 [Mus musculus]. 433 e-121
>ref|NP_076365.2| elongator complex protein 4 [Mus musculus].
Length = 422
Score = 433 bits (1113), Expect = e-121
Identities = 218/300 (72%), Positives = 240/300 (80%)
Frame = +2
Query: 89 ASKNNVTSFQRRGPRASGSDSGYSRLVSIAGTRPSVRNGQLLVSTGLPALDQXXXXXXXX 268
A + +SFQR+G +ASG G RL+SIAGTRPSVRNGQLLVSTGLPALDQ
Sbjct: 21 AGQGGTSSFQRKG-KASGGPGGGPRLLSIAGTRPSVRNGQLLVSTGLPALDQLLGGGLAV 79
Query: 269 XXXXXIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPADILQELPAPLLDDNCKK 448
IEEDKYNIYSPLLFKYF+AEGI+NGHTLLVASAKE+PA ILQELPAPLLDDN KK
Sbjct: 80 GTLLLIEEDKYNIYSPLLFKYFMAEGIINGHTLLVASAKENPAKILQELPAPLLDDNSKK 139
Query: 449 EFDEDVHNHKTPESNIKMKIAWRYQLLPKMEAGPVSSSRFGHYYDLSKRIPQELIEASKW 628
E EDVH+ KTPE N+ MKIAWRYQL PKME GPVSSSRFGHYYDLSKRIP EL+++SKW
Sbjct: 140 EL-EDVHSAKTPEPNVNMKIAWRYQLQPKMEVGPVSSSRFGHYYDLSKRIPWELLQSSKW 198
Query: 629 HRFFLPEKISSTFNVEPCSLTHGYKRLLQFIQNIIYEEGFDGCNPQKKQKNILRIGIQSL 808
H FFLPE IS E C L+ GY RLL+FIQ +Y EGFDG NPQKKQKNILRIGIQ+L
Sbjct: 199 HGFFLPEHISPDLKGESCFLSCGYMRLLEFIQKSVYAEGFDGANPQKKQKNILRIGIQNL 258
Query: 809 GSPLWGDDICCTENCDNSHSLTKFLYILRGLLRASLSACIINMPTHL*SGRTFQTTFPSL 988
GSPLWGDDICC ENCDN+H LTKFLYILRGLLR+SLSACII MP HL ++ T +L
Sbjct: 259 GSPLWGDDICCKENCDNNHRLTKFLYILRGLLRSSLSACIITMPAHLVQNKSITTRVRNL 318
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,011,866
Number of extensions: 863427
Number of successful extensions: 2327
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2326
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009075
(1063 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061913.3| elongator complex protein 4 [Homo sapiens]. 498 e-141
>ref|NP_061913.3| elongator complex protein 4 [Homo sapiens].
Length = 424
Score = 498 bits (1281), Expect = e-141
Identities = 251/307 (81%), Positives = 261/307 (85%)
Frame = +2
Query: 29 MAAVAXXXXXXXXXXXXVAAASKNNVTSFQRRGPRASGSDSGYSRLVSIAGTRPSVRNGQ 208
MAAVA VA ASK+NVTSFQRRGPRAS ++ RLVSIAGTRPSVRNGQ
Sbjct: 1 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ 60
Query: 209 LLVSTGLPALDQXXXXXXXXXXXXXIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE 388
LLVSTGLPALDQ IEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
Sbjct: 61 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE 120
Query: 389 DPADILQELPAPLLDDNCKKEFDEDVHNHKTPESNIKMKIAWRYQLLPKMEAGPVSSSRF 568
DPA+ILQELPAPLLDD CKKEFDEDV+NHKTPESNIKMKIAWRYQLLPKME GPVSSSRF
Sbjct: 121 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF 180
Query: 569 GHYYDLSKRIPQELIEASKWHRFFLPEKISSTFNVEPCSLTHGYKRLLQFIQNIIYEEGF 748
GHYYD SKR+PQELIEAS WH FFLPEKISST VEPCSLT GY +LLQFIQNIIYEEGF
Sbjct: 181 GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF 240
Query: 749 DGCNPQKKQKNILRIGIQSLGSPLWGDDICCTENCDNSHSLTKFLYILRGLLRASLSACI 928
DG NPQKKQ+NILRIGIQ+LGSPLWGDDICC EN NSHSLTKFLY+LRGLLR SLSACI
Sbjct: 241 DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI 300
Query: 929 INMPTHL 949
I MPTHL
Sbjct: 301 ITMPTHL 307
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,890,737
Number of extensions: 1021215
Number of successful extensions: 2759
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2758
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009075
(1063 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 509 e-142
>Sscrofa_Chr02
|| Length = 162569375
Score = 509 bits (257), Expect = e-142
Identities = 293/301 (97%), Gaps = 3/301 (0%)
Strand = Plus / Minus
Query: 765 agaaaaaacagaaaaatattttaagaataggaatccaaagtcttggttcacctttgtggg 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31657982 agaaaaaacagaaaaatattttaagaataggaatccaaagtcttggttcacctttgtggg 31657923
Query: 825 gagacgacatttgctgtactgagaactgtgacaacagtcacagtcttacgaagttcctgt 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31657922 gagacgacatttgctgtactgagaactgtgacaacagtcacagtcttacgaagttcctgt 31657863
Query: 885 atattctccgtggtcttctgcgagcctctctctcagcttgtatcatcaacatgccaacac 944
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 31657862 atattctccgtggtcttctgcgagcctctctctcagcttgtatcatcacaatgccaacac 31657803
Query: 945 acctttaatcaggt-agaactttcc-aaactactttcccctcactggtgggtcatcatga 1002
||| ||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 31657802 acc-ttatccaggtaagaactttccaaaactactttcccctcactggtggttcatcatga 31657744
Query: 1003 agaacagtatgtaaatgctttatgaccctgataaattattttcatataccacttggataa 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31657743 agaacagtatgtaaatgctttatgaccctgataaattattttcatataccacttggataa 31657684
Query: 1063 a 1063
|
Sbjct: 31657683 a 31657683
Score = 502 bits (253), Expect = e-139
Identities = 253/253 (100%)
Strand = Plus / Minus
Query: 1 ctattgggtcaacgcgggaagttccaagatggcggcagtggcgacctgcggcacctgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31737272 ctattgggtcaacgcgggaagttccaagatggcggcagtggcgacctgcggcacctgcac 31737213
Query: 61 cgggagtcccgggtccacagtggcggcggccagcaagaacaacgtcaccagtttccagcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31737212 cgggagtcccgggtccacagtggcggcggccagcaagaacaacgtcaccagtttccagcg 31737153
Query: 121 gaggggtcctagagccagcggttccgacagtggctactctcgactggtgtccatcgcggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31737152 gaggggtcctagagccagcggttccgacagtggctactctcgactggtgtccatcgcggg 31737093
Query: 181 gacacgaccgtctgtgcggaatggacagctgctggtgtcaactgggctcccagccctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31737092 gacacgaccgtctgtgcggaatggacagctgctggtgtcaactgggctcccagccctgga 31737033
Query: 241 ccagctcctaggt 253
|||||||||||||
Sbjct: 31737032 ccagctcctaggt 31737020
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 540 aggctggaccagtatcctcttcacgatttggtcactattatgatttatcaaaaagaatac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31675892 aggctggaccagtatcctcttcacgatttggtcactattatgatttatcaaaaagaatac 31675833
Query: 600 ctcaagaactaattgaagcttcaaaatggcatagattttttcttccagaaaaaatatcct 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31675832 ctcaagaactaattgaagcttcaaaatggcatagattttttcttccagaaaaaatatcct 31675773
Query: 660 caacatttaatgtagaaccctg 681
||||||||||||||||||||||
Sbjct: 31675772 caacatttaatgtagaaccctg 31675751
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 408 aggaacttcctgcaccgttacttgatgataattgtaaaaaggaatttgacgaagatgtac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31686182 aggaacttcctgcaccgttacttgatgataattgtaaaaaggaatttgacgaagatgtac 31686123
Query: 468 ataatcataaaacaccagaatctaacattaagatgaaaatagcttggcgttaccagttat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31686122 ataatcataaaacaccagaatctaacattaagatgaaaatagcttggcgttaccagttat 31686063
Query: 528 tacccaagatggaggc 543
||||||||||||||||
Sbjct: 31686062 tacccaagatggaggc 31686047
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 287 gaggaggataaatacaatatttattctcctttactctttaagtatttcctggcagaagga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31711786 gaggaggataaatacaatatttattctcctttactctttaagtatttcctggcagaagga 31711727
Query: 347 attgtcaatggacatactctgttggttgcatctgcaaaagaagaccctgctgacatttta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31711726 attgtcaatggacatactctgttggttgcatctgcaaaagaagaccctgctgacatttta 31711667
Query: 407 cagg 410
||||
Sbjct: 31711666 cagg 31711663
Score = 163 bits (82), Expect = 2e-37
Identities = 85/86 (98%)
Strand = Plus / Minus
Query: 681 gttctttgactcatggctacaaaagactgcttcagtttatccagaacatcatttatgagg 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31662727 gttctttgactcatggctacaaaagactgcttcagtttatccagaacatcatttatgagg 31662668
Query: 741 aaggatttgatggatgcaacccccag 766
||||||||||||||| ||||||||||
Sbjct: 31662667 aaggatttgatggatccaacccccag 31662642
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 250 aggtggaggtttggccgttggaacagttcttctaattg 287
||||||||||||||||||||||||||||||||||||||
Sbjct: 31729811 aggtggaggtttggccgttggaacagttcttctaattg 31729774
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,104,666
Number of extensions: 291
Number of successful extensions: 291
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 7
Length of query: 1063
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1042
Effective length of database: 2,808,413,156
Effective search space: 2926366508552
Effective search space used: 2926366508552
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)