Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009106
(1097 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039337.1| G2/mitotic-specific cyclin-B1 [Bos taurus]. 429 e-120
Alignment gi|NP_776689.2| G2/mitotic-specific cyclin-B2 [Bos taurus]. 193 3e-49
Alignment gi|NP_001068591.1| cyclin-A2 [Bos taurus]. 111 1e-24
Alignment gi|XP_002691847.1| PREDICTED: cyclin A1 [Bos taurus]. 110 3e-24
Alignment gi|XP_600212.3| PREDICTED: cyclin A1 [Bos taurus]. 110 3e-24
Alignment gi|NP_001179705.1| G1/S-specific cyclin-E1 [Bos taurus]. 80 3e-15
Alignment gi|XP_002694960.1| PREDICTED: cyclin E1 [Bos taurus]. 80 3e-15
Alignment gi|NP_001015665.1| G1/S-specific cyclin-E2 [Bos taurus]. 78 1e-14
Alignment gi|NP_001029881.1| G1/S-specific cyclin-D3 [Bos taurus]. 61 2e-09
Alignment gi|XP_002696375.1| PREDICTED: cyclin A1-like [Bos taurus]. 59 8e-09
>ref|NP_001039337.1| G2/mitotic-specific cyclin-B1 [Bos taurus].
Length = 427
Score = 429 bits (1102), Expect = e-120
Identities = 226/289 (78%), Positives = 235/289 (81%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALRITRNTKI+AENKAKISMAGAKRVPVA+ ATSKPGLRPRTALGDIGNKVSEQPQAKL
Sbjct: 1 MALRITRNTKISAENKAKISMAGAKRVPVAAVATSKPGLRPRTALGDIGNKVSEQPQAKL 60
Query: 410 PLKKEAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKLSPE 589
PLKKEAKT K +KLSPE
Sbjct: 61 PLKKEAKTLASGKVTAKKVPKPLEKAPVPVPEPQPEPEPEPEHV--------KEDKLSPE 112
Query: 590 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL 769
PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAV+DVDAEDG DPNLCSEYVKDIY YL
Sbjct: 113 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVSDVDAEDGADPNLCSEYVKDIYAYL 172
Query: 770 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNC 949
RQLEEEQAV+PKYL+GREVTGNMRAILIDWLVQVQ+KFRLLQETMYMTVSIIDRFMQD
Sbjct: 173 RQLEEEQAVKPKYLMGREVTGNMRAILIDWLVQVQIKFRLLQETMYMTVSIIDRFMQDTY 232
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
VPKKMLQLVGVTAMF+A +YEEMYPPEIGDF VTDNTYTK QIRQMEM
Sbjct: 233 VPKKMLQLVGVTAMFVASKYEEMYPPEIGDFAFVTDNTYTKFQIRQMEM 281
>ref|NP_776689.2| G2/mitotic-specific cyclin-B2 [Bos taurus].
Length = 398
Score = 193 bits (490), Expect = 3e-49
Identities = 97/177 (54%), Positives = 127/177 (71%), Gaps = 6/177 (3%)
Frame = +2
Query: 581 SPEPILVDT-----PSPSPMETSGCAPAEEYLCQAFSDVILA-VNDVDAEDGGDPNLCSE 742
S +P+ +D PSP+P + S EE LCQAFSD +L + D+D ED +P LCS+
Sbjct: 77 SVKPVQMDVLAPKGPSPTPQDIS---MKEENLCQAFSDALLCKIEDIDTEDWENPQLCSD 133
Query: 743 YVKDIYDYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSI 922
YVKDIY YLRQLE Q++ P +L GR++ G MRAIL+DWLVQV KFRLLQET+YM V++
Sbjct: 134 YVKDIYQYLRQLEVLQSINPHFLDGRDINGRMRAILVDWLVQVHSKFRLLQETLYMCVAV 193
Query: 923 IDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQME 1093
+DR++Q V +K LQLVG+TA+ +A +YEEM+ P I DF +TDN YT QIR+ME
Sbjct: 194 MDRYLQVQPVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREME 250
>ref|NP_001068591.1| cyclin-A2 [Bos taurus].
Length = 430
Score = 111 bits (278), Expect = 1e-24
Identities = 53/123 (43%), Positives = 86/123 (69%), Gaps = 1/123 (0%)
Frame = +2
Query: 728 NLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETM 904
N +Y +DI+ YLR++E + + Y+ + ++T +MRAIL+DWLV+V +++L ET+
Sbjct: 171 NEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETL 230
Query: 905 YMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIR 1084
++ V+ IDRF+ V + LQLVG AM +A ++EE+YPPE+ +F +TD+TYTK Q+
Sbjct: 231 HLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVL 290
Query: 1085 QME 1093
+ME
Sbjct: 291 RME 293
>ref|XP_002691847.1| PREDICTED: cyclin A1 [Bos taurus].
Length = 421
Score = 110 bits (274), Expect = 3e-24
Identities = 55/132 (41%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Frame = +2
Query: 704 DAED-GGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQM 877
DA D G D +EY ++I+ YLR+ E + Y+ + ++T +MR IL+DWL +V
Sbjct: 153 DASDFGTDVINVTEYAEEIHQYLREAEIRHRPKAHYMRKQPDITESMRTILVDWLAEVGE 212
Query: 878 KFRLLQETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTD 1057
+++L ET+Y+ V+ +DRF+ V + LQLVG A+ +A +YEE+YPPE+ +F +TD
Sbjct: 213 EYKLRAETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPEVDEFVYITD 272
Query: 1058 NTYTK*QIRQME 1093
+TYTK Q+ +ME
Sbjct: 273 DTYTKRQLLRME 284
>ref|XP_600212.3| PREDICTED: cyclin A1 [Bos taurus].
Length = 421
Score = 110 bits (274), Expect = 3e-24
Identities = 55/132 (41%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Frame = +2
Query: 704 DAED-GGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQM 877
DA D G D +EY ++I+ YLR+ E + Y+ + ++T +MR IL+DWL +V
Sbjct: 153 DASDFGTDVINVTEYAEEIHQYLREAEIRHRPKAHYMRKQPDITESMRTILVDWLAEVGE 212
Query: 878 KFRLLQETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTD 1057
+++L ET+Y+ V+ +DRF+ V + LQLVG A+ +A +YEE+YPPE+ +F +TD
Sbjct: 213 EYKLRAETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPEVDEFVYITD 272
Query: 1058 NTYTK*QIRQME 1093
+TYTK Q+ +ME
Sbjct: 273 DTYTKRQLLRME 284
>ref|NP_001179705.1| G1/S-specific cyclin-E1 [Bos taurus].
Length = 411
Score = 80.1 bits (196), Expect = 3e-15
Identities = 44/110 (40%), Positives = 71/110 (64%), Gaps = 4/110 (3%)
Frame = +2
Query: 779 EEEQAVRPKYLLGRE--VTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFM--QDN 946
+E+ +R K+L+ R + MRAIL+DWL++V ++L +ET Y+ DR+M Q N
Sbjct: 124 KEKTYLRDKHLMQRHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQQN 183
Query: 947 CVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
V K +LQL+G++++FIA + EE+YPP++ F VTD + +I ME+
Sbjct: 184 VV-KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMEL 232
>ref|XP_002694960.1| PREDICTED: cyclin E1 [Bos taurus].
Length = 554
Score = 80.1 bits (196), Expect = 3e-15
Identities = 44/110 (40%), Positives = 71/110 (64%), Gaps = 4/110 (3%)
Frame = +2
Query: 779 EEEQAVRPKYLLGRE--VTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFM--QDN 946
+E+ +R K+L+ R + MRAIL+DWL++V ++L +ET Y+ DR+M Q N
Sbjct: 267 KEKTYLRDKHLMQRHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQQN 326
Query: 947 CVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
V K +LQL+G++++FIA + EE+YPP++ F VTD + +I ME+
Sbjct: 327 VV-KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMEL 375
>ref|NP_001015665.1| G1/S-specific cyclin-E2 [Bos taurus].
Length = 404
Score = 78.2 bits (191), Expect = 1e-14
Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Frame = +2
Query: 779 EEEQAVRPKY--LLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFM-QDNC 949
+E + V K+ +L E+ MR+IL+DWL++V + L +ET Y+ DRFM
Sbjct: 120 KETRYVHDKHFEVLHSELEPQMRSILLDWLLEVCEVYTLHRETFYLAQDFFDRFMLTQKD 179
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
+ K MLQL+G+T++FIA + EE+Y P++ +F VTD ++ I +ME+
Sbjct: 180 INKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSEEDILRMEL 228
>ref|NP_001029881.1| G1/S-specific cyclin-D3 [Bos taurus].
Length = 292
Score = 61.2 bits (147), Expect = 2e-09
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Frame = +2
Query: 716 GGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYL--LGREVTGNMRAILIDWLVQVQMKFRL 889
G DP L + + + L +LEE R Y + RE+ +MR +L W+++V + R
Sbjct: 16 GPDPRLLGD--QRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRC 73
Query: 890 LQETMYMTVSIIDRFMQDNCVP--KKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNT 1063
+E + ++ +DR++ +CVP K LQL+G M +A + E P I C TD++
Sbjct: 74 EEEVFPLAMNYLDRYL--SCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHS 131
Query: 1064 YTK*QIRQMEM 1096
+ Q+R E+
Sbjct: 132 VSPRQLRDWEV 142
>ref|XP_002696375.1| PREDICTED: cyclin A1-like [Bos taurus].
Length = 351
Score = 58.9 bits (141), Expect = 8e-09
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Frame = +2
Query: 764 YLRQLEEEQAVRPKYLLGRE--VTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFM 937
Y + E P+ L R+ VT R L+ WL+ V +F L E++ +TV+ +DRF+
Sbjct: 107 YAFRKAREGRFHPRESLARQPQVTAESRCKLLSWLIPVHRQFGLSFESLCLTVNTLDRFL 166
Query: 938 QDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQME 1093
V QL+GVT++ IA + E++PP + + +++ Q+ +E
Sbjct: 167 STTPVAADCFQLLGVTSLLIACKQVEVHPPRVKQLLALCCGAFSRQQLCNLE 218
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,787,111
Number of extensions: 1084049
Number of successful extensions: 3870
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3853
Number of HSP's successfully gapped: 14
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009106
(1097 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851164.1| PREDICTED: similar to G2/mitotic-specific cycli... 437 e-122
Alignment gi|XP_850398.1| PREDICTED: similar to G2/mitotic-specific cycli... 437 e-122
Alignment gi|XP_544149.2| PREDICTED: similar to G2/mitotic-specific cycli... 424 e-119
Alignment gi|XP_863203.1| PREDICTED: similar to G2/mitotic-specific cycli... 352 4e-97
Alignment gi|XP_861333.1| PREDICTED: similar to G2/mitotic-specific cycli... 344 7e-95
Alignment gi|XP_855024.1| PREDICTED: similar to G2/mitotic-specific cycli... 278 5e-75
Alignment gi|XP_538643.2| PREDICTED: similar to G2/mitotic-specific cycli... 256 3e-68
Alignment gi|XP_863247.1| PREDICTED: similar to G2/mitotic-specific cycli... 200 2e-51
Alignment gi|XP_535499.1| PREDICTED: similar to cyclin B2 isoform 1 [Cani... 190 2e-48
Alignment gi|XP_864429.1| PREDICTED: similar to cyclin B2 isoform 4 [Cani... 182 5e-46
>ref|XP_851164.1| PREDICTED: similar to G2/mitotic-specific cyclin B1 isoform 1 [Canis
familiaris].
Length = 425
Score = 437 bits (1123), Expect = e-122
Identities = 229/289 (79%), Positives = 235/289 (81%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALR+TRNTK+N ENKAKI MAGAKRVP+ASAA SKPGLRPRTALGDIGNKVSEQPQAKL
Sbjct: 1 MALRVTRNTKVNVENKAKIGMAGAKRVPLASAAASKPGLRPRTALGDIGNKVSEQPQAKL 60
Query: 410 PLKKEAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKLSPE 589
PLKKEAKT K EKLSPE
Sbjct: 61 PLKKEAKTAVPGKVIAKKIPKPLEKAPEPVPVPEPELEPEPV----------KEEKLSPE 110
Query: 590 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL 769
PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDG DPNLCSEYVKDIY YL
Sbjct: 111 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGADPNLCSEYVKDIYAYL 170
Query: 770 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNC 949
RQLEEEQAV+PKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQ+NC
Sbjct: 171 RQLEEEQAVKPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNC 230
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
VPKKMLQLVGVTAMFIA +YEEMYPPEIGDF VTDNTYTK QIRQMEM
Sbjct: 231 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 279
>ref|XP_850398.1| PREDICTED: similar to G2/mitotic-specific cyclin B1 isoform 1 [Canis
familiaris].
Length = 425
Score = 437 bits (1123), Expect = e-122
Identities = 229/289 (79%), Positives = 235/289 (81%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALR+TRNTK+N ENKAKI MAGAKRVP+ASAA SKPGLRPRTALGDIGNKVSEQPQAKL
Sbjct: 1 MALRVTRNTKVNVENKAKIGMAGAKRVPLASAAASKPGLRPRTALGDIGNKVSEQPQAKL 60
Query: 410 PLKKEAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKLSPE 589
PLKKEAKT K EKLSPE
Sbjct: 61 PLKKEAKTAVPGKVIAKKIPKPLEKAPEPVPVPEPELEPEPV----------KEEKLSPE 110
Query: 590 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL 769
PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDG DPNLCSEYVKDIY YL
Sbjct: 111 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGADPNLCSEYVKDIYAYL 170
Query: 770 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNC 949
RQLEEEQAV+PKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQ+NC
Sbjct: 171 RQLEEEQAVKPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNC 230
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
VPKKMLQLVGVTAMFIA +YEEMYPPEIGDF VTDNTYTK QIRQMEM
Sbjct: 231 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 279
>ref|XP_544149.2| PREDICTED: similar to G2/mitotic-specific cyclin B1 [Canis
familiaris].
Length = 401
Score = 424 bits (1091), Expect = e-119
Identities = 223/289 (77%), Positives = 231/289 (79%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALR+TRNTK+N ENKAKI MAGAKRVP+ASAA SKPGLRPRTALGDIGNKVSEQPQAKL
Sbjct: 1 MALRVTRNTKVNVENKAKIGMAGAKRVPLASAAASKPGLRPRTALGDIGNKVSEQPQAKL 60
Query: 410 PLKKEAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKLSPE 589
PLKK +K K EKLSPE
Sbjct: 61 PLKKGSKNCKPELEPEPV----------------------------------KEEKLSPE 86
Query: 590 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL 769
PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDG DPNLCSEYVKDIY YL
Sbjct: 87 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGADPNLCSEYVKDIYAYL 146
Query: 770 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNC 949
RQLEEEQAV+PKYLLGREVTGNMRAILIDWL+QVQ KFRLLQETMYMTVSIID FMQ+NC
Sbjct: 147 RQLEEEQAVKPKYLLGREVTGNMRAILIDWLLQVQKKFRLLQETMYMTVSIIDWFMQNNC 206
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
VPKKMLQLVGVTAMFIA +YEEMYPPEIGDF VTDNTYTK QIRQMEM
Sbjct: 207 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 255
>ref|XP_863203.1| PREDICTED: similar to G2/mitotic-specific cyclin B1 isoform 2 [Canis
familiaris].
Length = 390
Score = 352 bits (903), Expect = 4e-97
Identities = 195/289 (67%), Positives = 200/289 (69%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALR+TRNTK+N ENKAKI MAGAKRVP+ASAA SKPGLRPRTALGDIGNKVSEQPQAKL
Sbjct: 1 MALRVTRNTKVNVENKAKIGMAGAKRVPLASAAASKPGLRPRTALGDIGNKVSEQPQAKL 60
Query: 410 PLKKEAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKLSPE 589
PLKKEAKT K EKLSPE
Sbjct: 61 PLKKEAKTAVPGKVIAKKIPKPLEKAPEPVPVPEPELEPEPV----------KEEKLSPE 110
Query: 590 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL 769
PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDG DPNLCSEYVKDIY YL
Sbjct: 111 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGADPNLCSEYVKDIYAYL 170
Query: 770 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNC 949
RQLEEEQA TMYMTVSIIDRFMQ+NC
Sbjct: 171 RQLEEEQA-----------------------------------TMYMTVSIIDRFMQNNC 195
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
VPKKMLQLVGVTAMFIA +YEEMYPPEIGDF VTDNTYTK QIRQMEM
Sbjct: 196 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 244
>ref|XP_861333.1| PREDICTED: similar to G2/mitotic-specific cyclin B1 isoform 2
[Canis familiaris].
Length = 232
Score = 344 bits (883), Expect = 7e-95
Identities = 183/237 (77%), Positives = 187/237 (78%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALR+TRNTK+N ENKAKI MAGAKRVP+ASAA SKPGLRPRTALGDIGNKVSEQPQAKL
Sbjct: 1 MALRVTRNTKVNVENKAKIGMAGAKRVPLASAAASKPGLRPRTALGDIGNKVSEQPQAKL 60
Query: 410 PLKKEAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKLSPE 589
PLKKEAKT K EKLSPE
Sbjct: 61 PLKKEAKTAVPGKVIAKKIPKPLEKAPEPVPVPEPELEPEPV----------KEEKLSPE 110
Query: 590 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL 769
PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDG DPNLCSEYVKDIY YL
Sbjct: 111 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGADPNLCSEYVKDIYAYL 170
Query: 770 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQ 940
RQLEEEQAV+PKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQ
Sbjct: 171 RQLEEEQAVKPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQ 227
>ref|XP_855024.1| PREDICTED: similar to G2/mitotic-specific cyclin B1 [Canis
familiaris].
Length = 300
Score = 278 bits (712), Expect = 5e-75
Identities = 140/158 (88%), Positives = 143/158 (90%)
Frame = +2
Query: 623 METSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYLRQLEEEQAVRP 802
METS CAPAEEYLCQAF DVIL VNDVDAEDG PNLCSEYVKDIY YLRQLEEEQAV+P
Sbjct: 1 METSRCAPAEEYLCQAFFDVILEVNDVDAEDGAHPNLCSEYVKDIYAYLRQLEEEQAVKP 60
Query: 803 KYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNCVPKKMLQLVGV 982
KYLL EVT NMRAILIDWLVQVQMKFRLLQETMY+TVSIIDRF Q NCVPKKMLQLVGV
Sbjct: 61 KYLLACEVTRNMRAILIDWLVQVQMKFRLLQETMYVTVSIIDRFTQKNCVPKKMLQLVGV 120
Query: 983 TAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
TAMFIA +YEEMYPPEIGDF VTDNTYTK QIRQMEM
Sbjct: 121 TAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 158
>ref|XP_538643.2| PREDICTED: similar to G2/mitotic-specific cyclin B1 [Canis
familiaris].
Length = 437
Score = 256 bits (654), Expect = 3e-68
Identities = 161/314 (51%), Positives = 177/314 (56%), Gaps = 4/314 (1%)
Frame = +2
Query: 167 SGLQCSASPL*AAAWPGTEEVMALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGL 346
SGLQ A P + ALR+TRNTK+N EN+AKI MAGAKRVP+ASAA SKP
Sbjct: 52 SGLQVGGGSR-ALPSPREDAAKALRVTRNTKVNVENEAKIGMAGAKRVPLASAAASKPSP 110
Query: 347 RPRTALGDIGNKVSEQPQAKLPLKKEAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 526
RPRTALGD GNKVSEQPQA LPLKKEAK+
Sbjct: 111 RPRTALGDAGNKVSEQPQATLPLKKEAKS------------------------------- 139
Query: 527 XXXXXXXXXXXXXKGEKLSPEPILVDTP----SPSPMETSGCAPAEEYLCQAFSDVILAV 694
K + +PEP+ V P P P++ +P
Sbjct: 140 -AVPGKVIAKKIPKPLEKAPEPVPVPVPEPELEPEPVKEEKLSP---------------- 182
Query: 695 NDVDAEDGGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQ 874
+P L + VK Y LLGREVTGNMR I IDWLVQVQ
Sbjct: 183 ---------EPKLEEQAVKPKY----------------LLGREVTGNMRVIPIDWLVQVQ 217
Query: 875 MKFRLLQETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVT 1054
MKFRLLQETMYMTVSIID FMQ+NCVPKKMLQLVGVTAMFIA +YEEMYPPEIGDF VT
Sbjct: 218 MKFRLLQETMYMTVSIIDWFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVT 277
Query: 1055 DNTYTK*QIRQMEM 1096
DN YTK QIRQMEM
Sbjct: 278 DNIYTKHQIRQMEM 291
>ref|XP_863247.1| PREDICTED: similar to G2/mitotic-specific cyclin B1 isoform 3 [Canis
familiaris].
Length = 364
Score = 200 bits (508), Expect = 2e-51
Identities = 103/125 (82%), Positives = 109/125 (87%)
Frame = +2
Query: 722 DPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQET 901
+P L E VK+ + EEQAV+PKYLLGREVTGNMRAILIDWLVQVQMKFRLLQET
Sbjct: 94 EPELEPEPVKEEKLSPEPILEEQAVKPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQET 153
Query: 902 MYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QI 1081
MYMTVSIIDRFMQ+NCVPKKMLQLVGVTAMFIA +YEEMYPPEIGDF VTDNTYTK QI
Sbjct: 154 MYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQI 213
Query: 1082 RQMEM 1096
RQMEM
Sbjct: 214 RQMEM 218
Score = 125 bits (314), Expect = 7e-29
Identities = 62/68 (91%), Positives = 65/68 (95%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALR+TRNTK+N ENKAKI MAGAKRVP+ASAA SKPGLRPRTALGDIGNKVSEQPQAKL
Sbjct: 1 MALRVTRNTKVNVENKAKIGMAGAKRVPLASAAASKPGLRPRTALGDIGNKVSEQPQAKL 60
Query: 410 PLKKEAKT 433
PLKKEAKT
Sbjct: 61 PLKKEAKT 68
>ref|XP_535499.1| PREDICTED: similar to cyclin B2 isoform 1 [Canis familiaris].
Length = 397
Score = 190 bits (483), Expect = 2e-48
Identities = 94/174 (54%), Positives = 124/174 (71%), Gaps = 3/174 (1%)
Frame = +2
Query: 581 SPEPILVDTPSPS--PMETSGCAPAEEYLCQAFSDVILA-VNDVDAEDGGDPNLCSEYVK 751
S +P+ ++ +P P + EE LCQAFSD +L + D+D ED +P LCS+YVK
Sbjct: 76 SVKPVQMEMLAPKGPPPALEEISMKEENLCQAFSDALLCKIEDIDQEDWENPQLCSDYVK 135
Query: 752 DIYDYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDR 931
DIY YLRQLE Q++ P +L GRE+ G MRAIL+DWLVQV KFRLLQET+YM ++++DR
Sbjct: 136 DIYQYLRQLEVLQSINPHFLDGREINGRMRAILVDWLVQVHSKFRLLQETLYMCIAVMDR 195
Query: 932 FMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQME 1093
F+Q V +K LQLVG+TA+ +A +YEEM+ P I DF +TDN YT QIR+ME
Sbjct: 196 FLQVQLVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREME 249
>ref|XP_864429.1| PREDICTED: similar to cyclin B2 isoform 4 [Canis familiaris].
Length = 397
Score = 182 bits (462), Expect = 5e-46
Identities = 92/174 (52%), Positives = 119/174 (68%), Gaps = 3/174 (1%)
Frame = +2
Query: 581 SPEPILVDTPSPS--PMETSGCAPAEEYLCQAFSDVILA-VNDVDAEDGGDPNLCSEYVK 751
S +P+ ++ +P P + EE LCQAFSD +L + D+D ED +P LCS+YVK
Sbjct: 76 SVKPVQMEMLAPKGPPPALEEISMKEENLCQAFSDALLCKIEDIDQEDWENPQLCSDYVK 135
Query: 752 DIYDYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDR 931
DIY YLRQLE R GRE+ G MRAIL+DWLVQV KFRLLQET+YM ++++DR
Sbjct: 136 DIYQYLRQLEVRSPTRDLIPNGREINGRMRAILVDWLVQVHSKFRLLQETLYMCIAVMDR 195
Query: 932 FMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQME 1093
F+Q V +K LQLVG+TA+ +A +YEEM+ P I DF +TDN YT QIR+ME
Sbjct: 196 FLQVQLVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREME 249
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,462,548
Number of extensions: 1114276
Number of successful extensions: 4077
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 4057
Number of HSP's successfully gapped: 32
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009106
(1097 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001164239.1| G2/mitotic-specific cyclin-B1 [Sus scrofa]. 459 e-130
Alignment gi|NP_001107754.1| G2/mitotic-specific cyclin-B2 [Sus scrofa]. 190 1e-48
Alignment gi|NP_001171397.1| cyclin-A2 [Sus scrofa]. 111 6e-25
Alignment gi|XP_003361818.1| PREDICTED: cyclin-A1-like [Sus scrofa]. 111 8e-25
Alignment gi|XP_001928285.1| PREDICTED: cyclin-A1 [Sus scrofa]. 111 8e-25
Alignment gi|XP_003135146.2| PREDICTED: g2/mitotic-specific cyclin-B3-lik... 103 2e-22
Alignment gi|XP_003127053.1| PREDICTED: g1/S-specific cyclin-E1 [Sus scro... 80 2e-15
Alignment gi|NP_001230860.1| cyclin E2 [Sus scrofa]. 77 2e-14
Alignment gi|XP_003127186.2| PREDICTED: g2/mitotic-specific cyclin-B2-lik... 69 6e-12
Alignment gi|XP_003134008.2| PREDICTED: cyclin-O-like [Sus scrofa]. 61 1e-09
>ref|NP_001164239.1| G2/mitotic-specific cyclin-B1 [Sus scrofa].
Length = 435
Score = 459 bits (1182), Expect = e-130
Identities = 240/289 (83%), Positives = 241/289 (83%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL
Sbjct: 1 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 60
Query: 410 PLKKEAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKLSPE 589
PLKKEAKT KGEKLSPE
Sbjct: 61 PLKKEAKTLAAGKVVAKKLPKPLEKAPVPVLEPQPEREPEPELEPEPEPEPVKGEKLSPE 120
Query: 590 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL 769
PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL
Sbjct: 121 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL 180
Query: 770 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNC 949
RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNC
Sbjct: 181 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNC 240
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
VPKKMLQLVGVTAMFIA +YEEMYPPEIGDF VTDNTYTK QIRQMEM
Sbjct: 241 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKYQIRQMEM 289
>ref|NP_001107754.1| G2/mitotic-specific cyclin-B2 [Sus scrofa].
Length = 396
Score = 190 bits (483), Expect = 1e-48
Identities = 94/163 (57%), Positives = 119/163 (73%), Gaps = 1/163 (0%)
Frame = +2
Query: 608 PSPSPMETSGCAPAEEYLCQAFSDVILA-VNDVDAEDGGDPNLCSEYVKDIYDYLRQLEE 784
PSP+P + EE LCQAFSD +L + D+D EDG +P LCS+YVKDIY YL+QLE
Sbjct: 91 PSPTPEDMK-----EESLCQAFSDALLCKIEDIDNEDGENPQLCSDYVKDIYQYLKQLEV 145
Query: 785 EQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNCVPKKM 964
+ P +L GR++ G MRAIL+DWLVQV KFRLLQET+YM V+I+DRF+Q V +K
Sbjct: 146 LHPINPHFLDGRDINGRMRAILVDWLVQVHSKFRLLQETLYMCVAIMDRFLQVQPVSRKK 205
Query: 965 LQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQME 1093
LQLVG+TA+ +A +YEEM+ P I DF +TDN YT QIR+ME
Sbjct: 206 LQLVGITALLLASKYEEMFSPNIKDFVYITDNAYTSSQIREME 248
>ref|NP_001171397.1| cyclin-A2 [Sus scrofa].
Length = 432
Score = 111 bits (278), Expect = 6e-25
Identities = 53/123 (43%), Positives = 86/123 (69%), Gaps = 1/123 (0%)
Frame = +2
Query: 728 NLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETM 904
N +Y +DI+ YLR++E + + Y+ + ++T +MRAIL+DWLV+V +++L ET+
Sbjct: 173 NEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETL 232
Query: 905 YMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIR 1084
++ V+ IDRF+ V + LQLVG AM +A ++EE+YPPE+ +F +TD+TYTK Q+
Sbjct: 233 HLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVL 292
Query: 1085 QME 1093
+ME
Sbjct: 293 RME 295
>ref|XP_003361818.1| PREDICTED: cyclin-A1-like [Sus scrofa].
Length = 545
Score = 111 bits (277), Expect = 8e-25
Identities = 56/132 (42%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Frame = +2
Query: 704 DAED-GGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQM 877
DA D G D +EY ++I+ YLR+ E + Y+ + ++T MR IL+DWLV+V
Sbjct: 277 DASDFGTDVINVTEYAEEIHQYLREAEMRYRPKAHYMRKQPDITEGMRTILVDWLVEVGE 336
Query: 878 KFRLLQETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTD 1057
+++L ET+Y+ V+ +DRF+ V + LQLVG A+ +A +YEE+YPPE+ +F +TD
Sbjct: 337 EYKLRAETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPEVDEFVYITD 396
Query: 1058 NTYTK*QIRQME 1093
+TYTK Q+ +ME
Sbjct: 397 DTYTKRQLLRME 408
>ref|XP_001928285.1| PREDICTED: cyclin-A1 [Sus scrofa].
Length = 421
Score = 111 bits (277), Expect = 8e-25
Identities = 56/132 (42%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Frame = +2
Query: 704 DAED-GGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQM 877
DA D G D +EY ++I+ YLR+ E + Y+ + ++T MR IL+DWLV+V
Sbjct: 153 DASDFGTDVINVTEYAEEIHQYLREAEMRYRPKAHYMRKQPDITEGMRTILVDWLVEVGE 212
Query: 878 KFRLLQETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTD 1057
+++L ET+Y+ V+ +DRF+ V + LQLVG A+ +A +YEE+YPPE+ +F +TD
Sbjct: 213 EYKLRAETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPEVDEFVYITD 272
Query: 1058 NTYTK*QIRQME 1093
+TYTK Q+ +ME
Sbjct: 273 DTYTKRQLLRME 284
>ref|XP_003135146.2| PREDICTED: g2/mitotic-specific cyclin-B3-like [Sus scrofa].
Length = 1349
Score = 103 bits (257), Expect = 2e-22
Identities = 56/173 (32%), Positives = 97/173 (56%)
Frame = +2
Query: 578 LSPEPILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDI 757
+S E T S E+S P+ ++ + + + D+D +D DP S Y KDI
Sbjct: 1038 MSSEGKFSATSKSSACESSSNKPSSSRGKRS-QEELTPLEDID-KDHSDPFFNSIYAKDI 1095
Query: 758 YDYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFM 937
+ Y+++ EE+ ++ ++ +MRAIL+DWLV+VQM F + ET+Y+ V ++D ++
Sbjct: 1096 FSYMKEREEKFILKKYMARQTDINSDMRAILVDWLVEVQMTFEMSHETLYLAVKLVDHYL 1155
Query: 938 QDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
+ + LQL+G TA IA ++EE PP + DF + D+ Y + ++ ME+
Sbjct: 1156 MEVICKRDKLQLLGSTAFLIAAKFEEPCPPCVDDFLYICDDIYKRDEMLAMEI 1208
>ref|XP_003127053.1| PREDICTED: g1/S-specific cyclin-E1 [Sus scrofa].
Length = 410
Score = 80.1 bits (196), Expect = 2e-15
Identities = 44/110 (40%), Positives = 71/110 (64%), Gaps = 4/110 (3%)
Frame = +2
Query: 779 EEEQAVRPKYLLGRE--VTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFM--QDN 946
+E+ +R K+L+ R + MRAIL+DWL++V ++L +ET Y+ DR+M Q N
Sbjct: 123 KEKTYLRDKHLMQRHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQQN 182
Query: 947 CVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
V K +LQL+G++++FIA + EE+YPP++ F VTD + +I ME+
Sbjct: 183 VV-KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMEL 231
>ref|NP_001230860.1| cyclin E2 [Sus scrofa].
Length = 405
Score = 77.0 bits (188), Expect = 2e-14
Identities = 41/109 (37%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Frame = +2
Query: 779 EEEQAVRPKY--LLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFM-QDNC 949
+E + V K+ +L ++ MR+IL+DWL++V + L +ET Y+ DRFM
Sbjct: 121 KETRYVHDKHFEVLHSDLEPQMRSILLDWLLEVCEVYTLHRETFYLAQDFFDRFMLTQKD 180
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
+ K MLQL+G+T++FIA + EE+Y P++ +F VTD ++ I +ME+
Sbjct: 181 INKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSEEDILRMEL 229
>ref|XP_003127186.2| PREDICTED: g2/mitotic-specific cyclin-B2-like [Sus scrofa].
Length = 365
Score = 68.6 bits (166), Expect = 6e-12
Identities = 34/98 (34%), Positives = 57/98 (58%)
Frame = +2
Query: 800 PKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNCVPKKMLQLVG 979
P L R VT MRA+++DWLVQV L +T+Y+ V ++D +++ V LQL+G
Sbjct: 82 PGRALPRTVTPEMRALVVDWLVQVHEYLGLAGDTLYLAVHLLDSYLRAGRVRLHRLQLLG 141
Query: 980 VTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQME 1093
V +F+A + EE PE C + D ++++ ++ + E
Sbjct: 142 VACLFVACKVEERVLPEPASLCLLGDGSFSRAELLRAE 179
>ref|XP_003134008.2| PREDICTED: cyclin-O-like [Sus scrofa].
Length = 474
Score = 61.2 bits (147), Expect = 1e-09
Identities = 41/166 (24%), Positives = 74/166 (44%)
Frame = +2
Query: 596 LVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYLRQ 775
L ++PS AP+ C + + +D + D Y + Y +L+
Sbjct: 59 LFESPSSGSDAADSPAPSTAPRCNSLPGPAQQLVQLDLQTFRD------YGQTCYAFLKA 112
Query: 776 LEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNCVP 955
E R +VT R L+ WL+ V +F L E++ +TV+ +DRF+ V
Sbjct: 113 RENHFHPRESLARQPQVTAESRCKLLSWLIPVHRQFGLSFESLCLTVNTLDRFLITTPVA 172
Query: 956 KKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQME 1093
QL+GVT++ IA + E++PP + + +++ Q+ +E
Sbjct: 173 ADCFQLLGVTSLLIACKQVEVHPPRVKQLLALCCGAFSRQQLCNLE 218
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,650,985
Number of extensions: 696746
Number of successful extensions: 2511
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2497
Number of HSP's successfully gapped: 14
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009106
(1097 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_485921.1| PREDICTED: g2/mitotic-specific cyclin-B1-like i... 414 e-116
Alignment gi|NP_758505.2| G2/mitotic-specific cyclin-B1 [Mus musculus]. 414 e-116
Alignment gi|NP_031656.2| G2/mitotic-specific cyclin-B2 [Mus musculus]. 189 3e-48
Alignment gi|XP_001005050.2| PREDICTED: g2/mitotic-specific cyclin-B1-lik... 115 5e-26
Alignment gi|NP_033958.2| cyclin-A2 [Mus musculus]. 112 4e-25
Alignment gi|NP_031654.2| cyclin-A1 [Mus musculus]. 110 2e-24
Alignment gi|NP_898836.2| G2/mitotic-specific cyclin-B3 [Mus musculus]. 103 2e-22
Alignment gi|NP_031659.2| G1/S-specific cyclin-E1 [Mus musculus]. 79 6e-15
Alignment gi|NP_001032211.1| G1/S-specific cyclin-E2 isoform 1 [Mus muscu... 79 8e-15
Alignment gi|NP_033960.1| G1/S-specific cyclin-E2 isoform 2 [Mus musculus]. 79 8e-15
>ref|XP_485921.1| PREDICTED: g2/mitotic-specific cyclin-B1-like isoform 1 [Mus
musculus].
Length = 460
Score = 414 bits (1065), Expect = e-116
Identities = 216/289 (74%), Positives = 231/289 (79%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALR+TRNTKINAENKAK+SMAGAKRVPV A SKPGLRPRTALGDIGNKVSE+ QA++
Sbjct: 1 MALRVTRNTKINAENKAKVSMAGAKRVPVTVTAASKPGLRPRTALGDIGNKVSEELQARV 60
Query: 410 PLKKEAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKLSPE 589
PLK+EAKT + EKLSPE
Sbjct: 61 PLKREAKTLGTGKGTVKALPKPVEKVPVCEPEVELAEPEPEPELEHV-----REEKLSPE 115
Query: 590 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL 769
PILVD PSPSPMETSGCAPAEEYLCQAFSDVILAV+DVDA+DG DPNLCSEYVKDIY YL
Sbjct: 116 PILVDNPSPSPMETSGCAPAEEYLCQAFSDVILAVSDVDADDGADPNLCSEYVKDIYAYL 175
Query: 770 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNC 949
RQLEEEQ+VRPKYL GREVTGNMRAILIDWL+QVQMKFRLLQETMYMTVSIIDRFMQ++C
Sbjct: 176 RQLEEEQSVRPKYLQGREVTGNMRAILIDWLIQVQMKFRLLQETMYMTVSIIDRFMQNSC 235
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
VPKKMLQLVGVTAMFIA +YEEMYPPEIGDF VT+NTYTK QIRQMEM
Sbjct: 236 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAYVTNNTYTKHQIRQMEM 284
>ref|NP_758505.2| G2/mitotic-specific cyclin-B1 [Mus musculus].
Length = 430
Score = 414 bits (1065), Expect = e-116
Identities = 216/289 (74%), Positives = 231/289 (79%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALR+TRNTKINAENKAK+SMAGAKRVPV A SKPGLRPRTALGDIGNKVSE+ QA++
Sbjct: 1 MALRVTRNTKINAENKAKVSMAGAKRVPVTVTAASKPGLRPRTALGDIGNKVSEELQARV 60
Query: 410 PLKKEAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKLSPE 589
PLK+EAKT + EKLSPE
Sbjct: 61 PLKREAKTLGTGKGTVKALPKPVEKVPVCEPEVELAEPEPEPELEHV-----REEKLSPE 115
Query: 590 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL 769
PILVD PSPSPMETSGCAPAEEYLCQAFSDVILAV+DVDA+DG DPNLCSEYVKDIY YL
Sbjct: 116 PILVDNPSPSPMETSGCAPAEEYLCQAFSDVILAVSDVDADDGADPNLCSEYVKDIYAYL 175
Query: 770 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNC 949
RQLEEEQ+VRPKYL GREVTGNMRAILIDWL+QVQMKFRLLQETMYMTVSIIDRFMQ++C
Sbjct: 176 RQLEEEQSVRPKYLQGREVTGNMRAILIDWLIQVQMKFRLLQETMYMTVSIIDRFMQNSC 235
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
VPKKMLQLVGVTAMFIA +YEEMYPPEIGDF VT+NTYTK QIRQMEM
Sbjct: 236 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTNNTYTKHQIRQMEM 284
>ref|NP_031656.2| G2/mitotic-specific cyclin-B2 [Mus musculus].
Length = 398
Score = 189 bits (481), Expect = 3e-48
Identities = 94/174 (54%), Positives = 124/174 (71%), Gaps = 3/174 (1%)
Frame = +2
Query: 581 SPEPILVDTPSPS--PMETSGCAPAEEYLCQAFSDVILA-VNDVDAEDGGDPNLCSEYVK 751
S +P+ ++ +P P + EE LCQAFSD +L + D+D ED +P LCS+YVK
Sbjct: 77 SVKPVQMEALAPKDRPPAPEDVSMKEESLCQAFSDALLCKIEDIDNEDRENPQLCSDYVK 136
Query: 752 DIYDYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDR 931
DIY YLRQLE Q++ P +L GR++ G MRAIL+DWLVQV KFRLLQET+YM ++I+DR
Sbjct: 137 DIYQYLRQLEVLQSINPHFLDGRDINGRMRAILVDWLVQVHSKFRLLQETLYMCIAIMDR 196
Query: 932 FMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQME 1093
F+Q V +K LQLVG+TA+ +A +YEEM+ P I DF +TDN YT QIR+ME
Sbjct: 197 FLQAQLVCRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREME 250
>ref|XP_001005050.2| PREDICTED: g2/mitotic-specific cyclin-B1-like [Mus musculus].
Length = 325
Score = 115 bits (289), Expect = 5e-26
Identities = 57/68 (83%), Positives = 63/68 (92%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALR+TRNTKINAENKAK+SMAGAKRVPV A SKPGLRPRTALGDIGNKVSE+ QA++
Sbjct: 1 MALRVTRNTKINAENKAKVSMAGAKRVPVTVTAASKPGLRPRTALGDIGNKVSEELQARV 60
Query: 410 PLKKEAKT 433
PLK+EAKT
Sbjct: 61 PLKREAKT 68
Score = 93.2 bits (230), Expect = 3e-19
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = +2
Query: 938 QDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
+ +CVPKKMLQLVGVTAMFIA +YEEMYPPEIGDF VT+NTYTK QIRQMEM
Sbjct: 97 EPDCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAYVTNNTYTKHQIRQMEM 149
>ref|NP_033958.2| cyclin-A2 [Mus musculus].
Length = 422
Score = 112 bits (281), Expect = 4e-25
Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Frame = +2
Query: 605 TPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYLRQLEE 784
TP PM+ S +P + D + VN+V +Y +DI+ YLR++E
Sbjct: 133 TPLDYPMDGSFESPHAMDMSIVLEDKPVNVNEVP-----------DYQEDIHTYLREMEV 181
Query: 785 EQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNCVPKK 961
+ + Y+ + ++T +MRAIL+DWLV+V +++L ET+++ V+ IDRF+ V +
Sbjct: 182 KCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG 241
Query: 962 MLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQME 1093
LQLVG AM +A ++EE+YPPE+ +F +TD+TY+K Q+ +ME
Sbjct: 242 KLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRME 285
>ref|NP_031654.2| cyclin-A1 [Mus musculus].
Length = 421
Score = 110 bits (275), Expect = 2e-24
Identities = 53/127 (41%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Frame = +2
Query: 716 GGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLL 892
G D +EY ++I+ YLR+ E + Y+ + ++T MRAIL+DWLV+V +++L
Sbjct: 158 GSDVINVTEYAEEIHRYLREAEVRHRPKAHYMRKQPDITEGMRAILVDWLVEVGEEYKLR 217
Query: 893 QETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK 1072
ET+Y+ V+ +DRF+ V + LQLVG A+ +A +YEE+YPP++ +F +TD+TYTK
Sbjct: 218 TETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPDVDEFVYITDDTYTK 277
Query: 1073 *QIRQME 1093
Q+ +ME
Sbjct: 278 RQLLRME 284
>ref|NP_898836.2| G2/mitotic-specific cyclin-B3 [Mus musculus].
Length = 1396
Score = 103 bits (257), Expect = 2e-22
Identities = 51/129 (39%), Positives = 85/129 (65%), Gaps = 1/129 (0%)
Frame = +2
Query: 710 EDGGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFR 886
++G DP L + Y KD+++YL++ EE+ V+ KY+ G+ E+T +MRAIL+DWLV++Q F+
Sbjct: 1124 KEGQDPLLNTIYAKDVFNYLKEREEKFLVQ-KYMDGQMELTSDMRAILVDWLVEIQGSFQ 1182
Query: 887 LLQETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTY 1066
+ ET+Y+ V I+D ++ K LQL+G T IA ++EE YPP + +F + ++ Y
Sbjct: 1183 MTHETLYLAVKIMDLYLMKAQCKKNHLQLLGSTTYMIAAKFEESYPPSLSEFLFICEDMY 1242
Query: 1067 TK*QIRQME 1093
K + +E
Sbjct: 1243 EKSDMVSLE 1251
>ref|NP_031659.2| G1/S-specific cyclin-E1 [Mus musculus].
Length = 408
Score = 79.0 bits (193), Expect = 6e-15
Identities = 42/110 (38%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Frame = +2
Query: 779 EEEQAVRPKYLLGRE--VTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFM--QDN 946
+E+ +R ++ L R + MRA+L+DWL++V ++L +ET Y+ DR+M Q N
Sbjct: 121 KEKTYLRDEHFLQRHPLLQARMRAVLLDWLMEVCEVYKLHRETFYLAQDFFDRYMASQHN 180
Query: 947 CVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
+ K +LQL+G++A+FIA + EE+YPP++ F VTD + +I ME+
Sbjct: 181 II-KTLLQLIGISALFIASKLEEIYPPKLHQFAYVTDGACSGDEILTMEL 229
>ref|NP_001032211.1| G1/S-specific cyclin-E2 isoform 1 [Mus musculus].
Length = 404
Score = 78.6 bits (192), Expect = 8e-15
Identities = 45/127 (35%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Frame = +2
Query: 725 PNLCSEYVKDIYDYLRQLEEEQAVRPKY--LLGREVTGNMRAILIDWLVQVQMKFRLLQE 898
P+L ++++ + Q +E + V K+ +L ++ MR+IL+DWL++V + L +E
Sbjct: 103 PDLSWACSQEVWQNMLQ-KENRYVHDKHFQVLHSDLEPQMRSILLDWLLEVCEVYTLHRE 161
Query: 899 TMYMTVSIIDRFM-QDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK* 1075
T Y+ DRFM V K MLQL+G+T++FIA + EE+Y P++ +F VTD ++
Sbjct: 162 TFYLAQDFFDRFMLTQKDVNKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSEV 221
Query: 1076 QIRQMEM 1096
I +ME+
Sbjct: 222 DILKMEL 228
>ref|NP_033960.1| G1/S-specific cyclin-E2 isoform 2 [Mus musculus].
Length = 403
Score = 78.6 bits (192), Expect = 8e-15
Identities = 45/127 (35%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Frame = +2
Query: 725 PNLCSEYVKDIYDYLRQLEEEQAVRPKY--LLGREVTGNMRAILIDWLVQVQMKFRLLQE 898
P+L ++++ + Q +E + V K+ +L ++ MR+IL+DWL++V + L +E
Sbjct: 102 PDLSWACSQEVWQNMLQ-KENRYVHDKHFQVLHSDLEPQMRSILLDWLLEVCEVYTLHRE 160
Query: 899 TMYMTVSIIDRFM-QDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK* 1075
T Y+ DRFM V K MLQL+G+T++FIA + EE+Y P++ +F VTD ++
Sbjct: 161 TFYLAQDFFDRFMLTQKDVNKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSEV 220
Query: 1076 QIRQMEM 1096
I +ME+
Sbjct: 221 DILKMEL 227
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,564,035
Number of extensions: 916271
Number of successful extensions: 2964
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 2952
Number of HSP's successfully gapped: 20
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009106
(1097 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_114172.1| G2/mitotic-specific cyclin-B1 [Homo sapiens]. 424 e-119
Alignment gi|NP_004692.1| G2/mitotic-specific cyclin-B2 [Homo sapiens]. 194 1e-49
Alignment gi|NP_001104517.1| cyclin-A1 isoform c [Homo sapiens]. 113 4e-25
Alignment gi|NP_001104516.1| cyclin-A1 isoform c [Homo sapiens]. 113 4e-25
Alignment gi|NP_001104515.1| cyclin-A1 isoform b [Homo sapiens]. 113 4e-25
Alignment gi|NP_003905.1| cyclin-A1 isoform a [Homo sapiens]. 113 4e-25
Alignment gi|NP_001228.1| cyclin-A2 [Homo sapiens]. 111 1e-24
Alignment gi|NP_149020.2| G2/mitotic-specific cyclin-B3 isoform 3 [Homo s... 104 2e-22
Alignment gi|NP_001229.1| G1/S-specific cyclin-E1 [Homo sapiens]. 79 1e-14
Alignment gi|NP_477097.1| G1/S-specific cyclin-E2 [Homo sapiens]. 77 2e-14
>ref|NP_114172.1| G2/mitotic-specific cyclin-B1 [Homo sapiens].
Length = 433
Score = 424 bits (1089), Expect = e-119
Identities = 225/289 (77%), Positives = 232/289 (80%)
Frame = +2
Query: 230 MALRITRNTKINAENKAKISMAGAKRVPVASAATSKPGLRPRTALGDIGNKVSEQPQAKL 409
MALR+TRN+KINAENKAKI+MAGAKRVP A AATSKPGLRPRTALGDIGNKVSEQ QAK+
Sbjct: 1 MALRVTRNSKINAENKAKINMAGAKRVPTAPAATSKPGLRPRTALGDIGNKVSEQLQAKM 60
Query: 410 PLKKEAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKLSPE 589
P+KKEAK K EKLSPE
Sbjct: 61 PMKKEAKPSATGKVIDKKLPKPLEKVPMLVPVPVSEPVPEPEPEPEPEPV--KEEKLSPE 118
Query: 590 PILVDTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYL 769
PILVDT SPSPMETSGCAPAEE LCQAFSDVILAVNDVDAEDG DPNLCSEYVKDIY YL
Sbjct: 119 PILVDTASPSPMETSGCAPAEEDLCQAFSDVILAVNDVDAEDGADPNLCSEYVKDIYAYL 178
Query: 770 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNC 949
RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQ+NC
Sbjct: 179 RQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNC 238
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
VPKKMLQLVGVTAMFIA +YEEMYPPEIGDF VTDNTYTK QIRQMEM
Sbjct: 239 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 287
>ref|NP_004692.1| G2/mitotic-specific cyclin-B2 [Homo sapiens].
Length = 398
Score = 194 bits (493), Expect = 1e-49
Identities = 100/175 (57%), Positives = 126/175 (72%), Gaps = 1/175 (0%)
Frame = +2
Query: 572 EKLSPEPILVDTPSPSPMETSGCAPAEEYLCQAFSDVILA-VNDVDAEDGGDPNLCSEYV 748
EKL+P+ PSP+P + S EE LCQAFSD +L + D+D ED +P LCS+YV
Sbjct: 84 EKLAPKG-----PSPTPEDVS---MKEENLCQAFSDALLCKIEDIDNEDWENPQLCSDYV 135
Query: 749 KDIYDYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIID 928
KDIY YLRQLE Q++ P +L GR++ G MRAIL+DWLVQV KFRLLQET+YM V I+D
Sbjct: 136 KDIYQYLRQLEVLQSINPHFLDGRDINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMD 195
Query: 929 RFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQME 1093
RF+Q V +K LQLVG+TA+ +A +YEEM+ P I DF +TDN YT QIR+ME
Sbjct: 196 RFLQVQPVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREME 250
>ref|NP_001104517.1| cyclin-A1 isoform c [Homo sapiens].
Length = 421
Score = 113 bits (282), Expect = 4e-25
Identities = 55/127 (43%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +2
Query: 716 GGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLL 892
G D +EY ++IY YLR+ E + Y+ + ++T MR IL+DWLV+V +++L
Sbjct: 158 GTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLR 217
Query: 893 QETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK 1072
ET+Y+ V+ +DRF+ V + LQLVG AM +A +YEE+YPPE+ +F +TD+TYTK
Sbjct: 218 AETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTK 277
Query: 1073 *QIRQME 1093
Q+ +ME
Sbjct: 278 RQLLKME 284
>ref|NP_001104516.1| cyclin-A1 isoform c [Homo sapiens].
Length = 421
Score = 113 bits (282), Expect = 4e-25
Identities = 55/127 (43%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +2
Query: 716 GGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLL 892
G D +EY ++IY YLR+ E + Y+ + ++T MR IL+DWLV+V +++L
Sbjct: 158 GTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLR 217
Query: 893 QETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK 1072
ET+Y+ V+ +DRF+ V + LQLVG AM +A +YEE+YPPE+ +F +TD+TYTK
Sbjct: 218 AETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTK 277
Query: 1073 *QIRQME 1093
Q+ +ME
Sbjct: 278 RQLLKME 284
>ref|NP_001104515.1| cyclin-A1 isoform b [Homo sapiens].
Length = 464
Score = 113 bits (282), Expect = 4e-25
Identities = 55/127 (43%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +2
Query: 716 GGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLL 892
G D +EY ++IY YLR+ E + Y+ + ++T MR IL+DWLV+V +++L
Sbjct: 201 GTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLR 260
Query: 893 QETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK 1072
ET+Y+ V+ +DRF+ V + LQLVG AM +A +YEE+YPPE+ +F +TD+TYTK
Sbjct: 261 AETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTK 320
Query: 1073 *QIRQME 1093
Q+ +ME
Sbjct: 321 RQLLKME 327
>ref|NP_003905.1| cyclin-A1 isoform a [Homo sapiens].
Length = 465
Score = 113 bits (282), Expect = 4e-25
Identities = 55/127 (43%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +2
Query: 716 GGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLL 892
G D +EY ++IY YLR+ E + Y+ + ++T MR IL+DWLV+V +++L
Sbjct: 202 GTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLR 261
Query: 893 QETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK 1072
ET+Y+ V+ +DRF+ V + LQLVG AM +A +YEE+YPPE+ +F +TD+TYTK
Sbjct: 262 AETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTK 321
Query: 1073 *QIRQME 1093
Q+ +ME
Sbjct: 322 RQLLKME 328
>ref|NP_001228.1| cyclin-A2 [Homo sapiens].
Length = 432
Score = 111 bits (278), Expect = 1e-24
Identities = 53/123 (43%), Positives = 86/123 (69%), Gaps = 1/123 (0%)
Frame = +2
Query: 728 NLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETM 904
N +Y +DI+ YLR++E + + Y+ + ++T +MRAIL+DWLV+V +++L ET+
Sbjct: 173 NEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETL 232
Query: 905 YMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIR 1084
++ V+ IDRF+ V + LQLVG AM +A ++EE+YPPE+ +F +TD+TYTK Q+
Sbjct: 233 HLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVL 292
Query: 1085 QME 1093
+ME
Sbjct: 293 RME 295
>ref|NP_149020.2| G2/mitotic-specific cyclin-B3 isoform 3 [Homo sapiens].
Length = 1395
Score = 104 bits (259), Expect = 2e-22
Identities = 51/134 (38%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Frame = +2
Query: 698 DVDAEDGGDPNLCSEYVKDIYDYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQ 874
D+D ED DP+ Y K+I+ Y+++ EEQ + Y+ + E+T +MRAIL+DWLV+VQ
Sbjct: 1115 DID-EDSSDPSFNPMYAKEIFSYMKE-REEQFILTDYMNRQIEITSDMRAILVDWLVEVQ 1172
Query: 875 MKFRLLQETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVT 1054
+ F + ET+Y+ V ++D ++ K LQL+G TA IA ++EE P + DF +
Sbjct: 1173 VSFEMTHETLYLAVKLVDLYLMKAVCKKDKLQLLGATAFMIAAKFEEHNSPRVDDFVYIC 1232
Query: 1055 DNTYTK*QIRQMEM 1096
D+ Y + ++ ME+
Sbjct: 1233 DDNYQRSEVLSMEI 1246
>ref|NP_001229.1| G1/S-specific cyclin-E1 [Homo sapiens].
Length = 410
Score = 78.6 bits (192), Expect = 1e-14
Identities = 46/116 (39%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
Frame = +2
Query: 764 YLRQ---LEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRF 934
YLR LE+ ++PK MRAIL+DWL++V ++L +ET Y+ DR+
Sbjct: 127 YLRDQHFLEQHPLLQPK----------MRAILLDWLMEVCEVYKLHRETFYLAQDFFDRY 176
Query: 935 M--QDNCVPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
M Q+N V K +LQL+G++++FIA + EE+YPP++ F VTD + +I ME+
Sbjct: 177 MATQENVV-KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMEL 231
>ref|NP_477097.1| G1/S-specific cyclin-E2 [Homo sapiens].
Length = 404
Score = 77.4 bits (189), Expect = 2e-14
Identities = 41/109 (37%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Frame = +2
Query: 779 EEEQAVRPKY--LLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFM-QDNC 949
+E + V K+ +L ++ MR+IL+DWL++V + L +ET Y+ DRFM
Sbjct: 120 KESRYVHDKHFEVLHSDLEPQMRSILLDWLLEVCEVYTLHRETFYLAQDFFDRFMLTQKD 179
Query: 950 VPKKMLQLVGVTAMFIAQQYEEMYPPEIGDFCXVTDNTYTK*QIRQMEM 1096
+ K MLQL+G+T++FIA + EE+Y P++ +F VTD ++ I +ME+
Sbjct: 180 INKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSEEDILRMEL 228
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,725,876
Number of extensions: 1093187
Number of successful extensions: 3772
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3750
Number of HSP's successfully gapped: 18
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009106
(1097 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 496 e-137
>Sscrofa_Chr16
|| Length = 86898991
Score = 496 bits (250), Expect = e-137
Identities = 250/250 (100%)
Strand = Plus / Minus
Query: 1 ttttcggaggaactggccgccgccaatgggaagtgagcgagtgccacgaacaggccaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51165857 ttttcggaggaactggccgccgccaatgggaagtgagcgagtgccacgaacaggccaata 51165798
Query: 61 aggagggagcggtgcggggtttaaacccgaggcggggccggattcctcccggcgtgctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51165797 aggagggagcggtgcggggtttaaacccgaggcggggccggattcctcccggcgtgctgc 51165738
Query: 121 ggaggaacggctgttagctagtggtggcttcaaggtccccggctggtcggggctccagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51165737 ggaggaacggctgttagctagtggtggcttcaaggtccccggctggtcggggctccagtg 51165678
Query: 181 ctctgcttctcccctctgagctgctgcctggcctggtacagaggaagtcatggcgctccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51165677 ctctgcttctcccctctgagctgctgcctggcctggtacagaggaagtcatggcgctccg 51165618
Query: 241 gatcaccagg 250
||||||||||
Sbjct: 51165617 gatcaccagg 51165608
Score = 367 bits (185), Expect = 9e-99
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 598 ggttgatactccctctccaagccccatggaaacatctggctgtgcccctgcagaagaata 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51162634 ggttgatactccctctccaagccccatggaaacatctggctgtgcccctgcagaagaata 51162575
Query: 658 tttgtgtcaggctttctctgatgtaattcttgcagtgaatgatgtggatgcagaagatgg 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51162574 tttgtgtcaggctttctctgatgtaattcttgcagtgaatgatgtggatgcagaagatgg 51162515
Query: 718 aggggatccaaacctttgtagtgaatatgtgaaagatatctatgattatctgagacaact 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51162514 aggggatccaaacctttgtagtgaatatgtgaaagatatctatgattatctgagacaact 51162455
Query: 778 tgagg 782
|||||
Sbjct: 51162454 tgagg 51162450
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 420 aggaagcaaaaactttagctgctggaaaagttgttgctaaaaaactaccgaaacctctgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51164737 aggaagcaaaaactttagctgctggaaaagttgttgctaaaaaactaccgaaacctctgg 51164678
Query: 480 aaaaggctcctgtacctgtattagagccccagccagagagggagcccgagcctgaactgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51164677 aaaaggctcctgtacctgtattagagccccagccagagagggagcccgagcctgaactgg 51164618
Query: 540 agcctgaaccagaacctgagcctgttaaaggagagaaactttcccctgaacctattttgg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51164617 agcctgaaccagaacctgagcctgttaaaggagagaaactttcccctgaacctattttgg 51164558
Query: 600 t 600
|
Sbjct: 51164557 t 51164557
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 250 gaacacgaaaattaatgctgaaaataaggcgaagatcagtatggcaggcgcaaagcgcgt 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51165000 gaacacgaaaattaatgctgaaaataaggcgaagatcagtatggcaggcgcaaagcgcgt 51164941
Query: 310 gcctgtggcctctgctgcaacctctaagcccggactgaggccaagaactgctcttggaga 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51164940 gcctgtggcctctgctgcaacctctaagcccggactgaggccaagaactgctcttggaga 51164881
Query: 370 catcggtaacaaagtcagtgaacagccacaggccaaactgcctctgaaaaagg 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51164880 catcggtaacaaagtcagtgaacagccacaggccaaactgcctctgaaaaagg 51164828
Score = 321 bits (162), Expect = 5e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 780 aggaagaacaagcagttagaccaaaatacctactgggtcgtgaagtcactggaaacatga 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51158813 aggaagaacaagcagttagaccaaaatacctactgggtcgtgaagtcactggaaacatga 51158754
Query: 840 gagccatcctaattgactggctagtgcaggttcagatgaaattcaggttactacaggaga 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51158753 gagccatcctaattgactggctagtgcaggttcagatgaaattcaggttactacaggaga 51158694
Query: 900 ccatgtacatgacagtttccattattgatcggttcatgcagg 941
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51158693 ccatgtacatgacagtttccattattgatcggttcatgcagg 51158652
Score = 262 bits (132), Expect = 4e-67
Identities = 157/163 (96%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 936 tgcaggataattgtgtgcccaagaagatgctccaactggttggtgtcactgccatgttta 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51158466 tgcaggataattgtgtgcccaagaagatgctccaactggttggtgtcactgccatgttta 51158407
Query: 996 ttgcccagcaa-tatgaagaaatgtaccctccagaaattggtgacttttgcnttgtgact 1054
||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 51158406 ttgcc-agcaaatatgaagaaatgtaccctccagaaattggtgactttgcctttgtgact 51158348
Query: 1055 gacaatacttacactaagtaacaaatcaggcagatggaaatga 1097
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 51158347 gacaatacttacactaagtaccaaatcaggcagatggaaatga 51158305
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,223,323
Number of extensions: 194
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 6
Length of query: 1097
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1076
Effective length of database: 2,808,413,156
Effective search space: 3021852555856
Effective search space used: 3021852555856
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)