Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009110
(1604 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070310.1| signal transducing adapter molecule 1 [Bos t... 803 0.0
Alignment gi|NP_001069574.1| signal transducing adapter molecule 2 [Bos t... 499 e-141
Alignment gi|NP_001030187.1| target of Myb protein 1 [Bos taurus]. 106 5e-23
Alignment gi|XP_002704416.1| PREDICTED: target of myb1 [Bos taurus]. 106 5e-23
Alignment gi|NP_001092624.1| target of myb1-like 2 [Bos taurus]. 99 1e-20
Alignment gi|NP_001039554.1| hepatocyte growth factor-regulated tyrosine ... 90 7e-18
Alignment gi|NP_001076873.1| ADP-ribosylation factor-binding protein GGA3... 75 2e-13
Alignment gi|NP_001179489.1| GRB2-related adaptor protein 2 [Bos taurus]. 74 3e-13
Alignment gi|XP_002687983.1| PREDICTED: GRB2-related adaptor protein 2-li... 74 3e-13
Alignment gi|XP_002691512.1| PREDICTED: intersectin-1-like [Bos taurus]. 70 5e-12
>ref|NP_001070310.1| signal transducing adapter molecule 1 [Bos taurus].
Length = 534
Score = 803 bits (2073), Expect = 0.0
Identities = 408/452 (90%), Positives = 413/452 (91%)
Frame = +2
Query: 227 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPH 406
MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRS+MRRVNHKDPH
Sbjct: 1 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPH 60
Query: 407 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 586
VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK
Sbjct: 61 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 120
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI 766
NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGT ANKKEEEDLAKAI
Sbjct: 121 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTAANKKEEEDLAKAI 180
Query: 767 ELSLKEQRQQXXXXXXXXXXXXXXXXNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL 946
ELSLKEQRQQ NHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL
Sbjct: 181 ELSLKEQRQQSTTLSTLYPSTSNLLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL 240
Query: 947 DDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQA 1126
DDSDPNWWKGETHQGMGLFPSNFVTADLT EPEMIKTEKKTVQFSD+VQVETIEPEPE A
Sbjct: 241 DDSDPNWWKGETHQGMGLFPSNFVTADLTVEPEMIKTEKKTVQFSDEVQVETIEPEPEPA 300
Query: 1127 YIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL 1306
YIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL
Sbjct: 301 YIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL 360
Query: 1307 NGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPPSSRCLLVAGTA 1486
N KVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVY PP S LVAG+A
Sbjct: 361 NVKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVY--PPQSGAYLVAGSA 418
Query: 1487 QMSHLQTYSLPQSSCLPLAQEGFHRPPAQPFL 1582
QMSHLQ+YSLP L+Q G P A P L
Sbjct: 419 QMSHLQSYSLPPEQLSSLSQ-GAVPPSANPAL 449
>ref|NP_001069574.1| signal transducing adapter molecule 2 [Bos taurus].
Length = 525
Score = 499 bits (1284), Expect = e-141
Identities = 266/461 (57%), Positives = 321/461 (69%), Gaps = 9/461 (1%)
Frame = +2
Query: 227 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPH 406
MPLF NPF+QDVEKAT+E NT EDW LI+DICDKVG + G KDCL+++M+RVNHK PH
Sbjct: 1 MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPH 60
Query: 407 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDEF 583
VA+QALTLLGACV+NCGKIFHLEVCSRDFA+EV V+ NK HPKVCEKLK+LMVEW++EF
Sbjct: 61 VALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 120
Query: 584 KNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANK-KEEEDLAK 760
+ DPQ SLISA IK++KE+G+TFP GSQ A + GT +NK KE+ED+AK
Sbjct: 121 QKDPQFSLISATIKSMKEEGITFPPSGSQTVSAAAKN--------GTSSNKNKEDEDIAK 172
Query: 761 AIELSLKEQRQQXXXXXXXXXXXXXXXXNHQHEGRKVRAIYDFEAAEDNELTFKAGEIIT 940
AIELSL+EQ+QQ N RKVRA+YDFEA EDNELTFK GEII
Sbjct: 173 AIELSLQEQKQQHTETKSLYPSAEIQSNN--KVARKVRALYDFEAVEDNELTFKHGEIII 230
Query: 941 VLDDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPE 1120
VLDDSD NWWKGE H+G+GLFPSNFVT +L E E + + DD + E + EPE
Sbjct: 231 VLDDSDANWWKGENHRGIGLFPSNFVTCNLNIESEAAVDKLNII---DDEEEEIKKSEPE 287
Query: 1121 QAYIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELS 1300
YIDEDKMD+ LQ+LQS DP+D +PD +LL LE +C QMG +IDEKLE+IDRKHSELS
Sbjct: 288 PVYIDEDKMDRALQVLQSIDPTDSKPDSQDLLDLEDICQQMGRMIDEKLEEIDRKHSELS 347
Query: 1301 ELNGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPPSSRCLLVAG 1480
ELN KV+EAL LY KLMNE P+Y++Y+K+ + +Y SS Q YP P +
Sbjct: 348 ELNVKVLEALELYNKLMNEAPVYAVYSKIHHPAHYPTSSAGVPIQTYPVQPHGGNYMGQS 407
Query: 1481 TAQMSHLQTYSL------PQSSCLPLAQEGFHRPPAQ-PFL 1582
Q++ Q+YSL P S P PAQ P+L
Sbjct: 408 IHQVTVAQSYSLGPDQIGPLRSLPPTVNSSVTTQPAQTPYL 448
>ref|NP_001030187.1| target of Myb protein 1 [Bos taurus].
Length = 492
Score = 106 bits (265), Expect = 5e-23
Identities = 56/143 (39%), Positives = 87/143 (60%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRR-VNHKDPHVAMQ 418
++P Q +EKAT +EDW L ++ICD + ++ GPKD R+V +R V +K+ H M
Sbjct: 10 SSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIVGNKNFHEVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V S+DF V +L K +P V +K+ L+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHVLVASQDFVEGVLVRTILPKNNPPTIVHDKVLTLIQSWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + A+ ++L+ +G+ FP
Sbjct: 130 SSPDLTGVVAVYEDLRRKGLEFP 152
>ref|XP_002704416.1| PREDICTED: target of myb1 [Bos taurus].
Length = 433
Score = 106 bits (265), Expect = 5e-23
Identities = 56/143 (39%), Positives = 87/143 (60%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRR-VNHKDPHVAMQ 418
++P Q +EKAT +EDW L ++ICD + ++ GPKD R+V +R V +K+ H M
Sbjct: 10 SSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIVGNKNFHEVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V S+DF V +L K +P V +K+ L+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHVLVASQDFVEGVLVRTILPKNNPPTIVHDKVLTLIQSWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + A+ ++L+ +G+ FP
Sbjct: 130 SSPDLTGVVAVYEDLRRKGLEFP 152
>ref|NP_001092624.1| target of myb1-like 2 [Bos taurus].
Length = 390
Score = 98.6 bits (244), Expect = 1e-20
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 6/175 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R+N +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V +RDF V + K P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHVLVANRDFIDSVLVKVISPKNSPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAK-DPGTVANKKEEE 748
+ P L+ + + LK +GV FP A V + DP K + +
Sbjct: 130 SSPDLTGVVHAYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATMPKSQSQ 184
>ref|NP_001039554.1| hepatocyte growth factor-regulated tyrosine kinase substrate [Bos
taurus].
Length = 776
Score = 89.7 bits (221), Expect = 7e-18
Identities = 45/136 (33%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Frame = +2
Query: 251 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQALTL 430
F++ ++KATS++ DW IL ICD + Q T K + S+ ++VN K+PHVA+ AL +
Sbjct: 8 FERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVSSIKKKVNDKNPHVALYALEV 67
Query: 431 LGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTDEFKNDPQLSL 607
+ + V NCG+ H EV ++ E+ ++L + V K+ L+ W F+N+P+ +
Sbjct: 68 MESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKV 127
Query: 608 ISAMIKNLKEQGVTFP 655
+ + +K +G FP
Sbjct: 128 VQDTYQIMKVEGHVFP 143
>ref|NP_001076873.1| ADP-ribosylation factor-binding protein GGA3 [Bos taurus].
Length = 582
Score = 75.1 bits (183), Expect = 2e-13
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 6/134 (4%)
Frame = +2
Query: 263 VEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQALTLLGAC 442
+ KAT+ N EDW I+ CD++ + GP+ +R + ++ A+QALT+L AC
Sbjct: 13 LNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEAVQALTVLEAC 72
Query: 443 VSNCGKIFHLEVCSRDFASEVSNVLNKGH--PKVCEKLKALMVE----WTDEFKNDPQLS 604
+ NCG+ FH EV F +E+ V++ + +V EK+K ++E WT P+ S
Sbjct: 73 MKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTLAL---PEES 129
Query: 605 LISAMIKNLKEQGV 646
I LK QG+
Sbjct: 130 KIKDAYHMLKRQGI 143
>ref|NP_001179489.1| GRB2-related adaptor protein 2 [Bos taurus].
Length = 316
Score = 74.3 bits (181), Expect = 3e-13
Identities = 30/52 (57%), Positives = 40/52 (76%)
Frame = +2
Query: 863 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFV 1018
R RA+YDFEA ED+EL F+ GE++ VLD S+P+WW G H +GLFP+N+V
Sbjct: 260 RWARALYDFEALEDDELGFRCGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 311
>ref|XP_002687983.1| PREDICTED: GRB2-related adaptor protein 2-like [Bos taurus].
Length = 316
Score = 74.3 bits (181), Expect = 3e-13
Identities = 30/52 (57%), Positives = 40/52 (76%)
Frame = +2
Query: 863 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFV 1018
R RA+YDFEA ED+EL F+ GE++ VLD S+P+WW G H +GLFP+N+V
Sbjct: 260 RWARALYDFEALEDDELGFRCGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 311
>ref|XP_002691512.1| PREDICTED: intersectin-1-like [Bos taurus].
Length = 1702
Score = 70.1 bits (170), Expect = 5e-12
Identities = 54/193 (27%), Positives = 101/193 (52%), Gaps = 7/193 (3%)
Frame = +2
Query: 854 HEGRKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFVTADLT 1033
H +V A+YD+ A ++EL+F G++I VL+ DP+WW+GET GLFPSN+V
Sbjct: 1132 HPVCQVIAMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGETSGVTGLFPSNYVKMTTD 1191
Query: 1034 AEPEMIKTEKKTVQFSDDVQ-VETIEPEPEQAYIDEDKMDQLLQMLQSTDPSDDQPDLPE 1210
A+P Q+ D+Q ++T++P ++ + + +++++ + D DL
Sbjct: 1192 ADPSQ--------QWCADLQTLDTMQP------VERKRQGYIHELIETEERYVD--DLQL 1235
Query: 1211 LLHL-EAMCHQMGPLIDEKLEDIDRKHSELSELNGKVMEALSLYTKLMNED-PMYS---- 1372
++ + + + G L + ++ I EL N K+++AL + K E P++
Sbjct: 1236 VVEVFQKRITEPGFLAEGEMALIFVNWKELIMANTKLLKALRVRKKTGGEKMPVHMIGDI 1295
Query: 1373 MYAKLQNQQYYIQ 1411
+ A+L + Q YI+
Sbjct: 1296 LAAELSHMQAYIR 1308
Score = 50.4 bits (119), Expect = 4e-06
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 857 EGRKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFV 1018
E K +A+ + A ++N L F +IITVL+ + NWW GE H G G FP ++V
Sbjct: 904 ENLKAQALCSWTAKKENHLNFSKHDIITVLEQQE-NWWFGEVHGGRGWFPKSYV 956
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,555,517
Number of extensions: 1298774
Number of successful extensions: 4364
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 4307
Number of HSP's successfully gapped: 61
Length of query: 534
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,140,958
Effective search space: 6038189066
Effective search space used: 6038189066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009110
(1604 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535174.2| PREDICTED: similar to signal transducing adapto... 811 0.0
Alignment gi|XP_533357.2| PREDICTED: similar to Signal transducing adapte... 483 e-136
Alignment gi|XP_862324.1| PREDICTED: similar to Target of Myb protein 1 i... 107 4e-23
Alignment gi|XP_864623.1| PREDICTED: similar to target of myb1-like 2 iso... 102 1e-21
Alignment gi|XP_864606.1| PREDICTED: similar to target of myb1-like 2 iso... 102 1e-21
Alignment gi|XP_864586.1| PREDICTED: similar to target of myb1-like 2 iso... 102 1e-21
Alignment gi|XP_546659.2| PREDICTED: similar to target of myb1-like 2 iso... 102 1e-21
Alignment gi|XP_864554.1| PREDICTED: similar to target of myb1-like 2 iso... 100 3e-21
Alignment gi|XP_864538.1| PREDICTED: similar to target of myb1-like 2 iso... 100 4e-21
Alignment gi|XP_864572.1| PREDICTED: similar to target of myb1-like 2 iso... 100 5e-21
>ref|XP_535174.2| PREDICTED: similar to signal transducing adaptor molecule 1 [Canis
familiaris].
Length = 538
Score = 811 bits (2095), Expect = 0.0
Identities = 409/452 (90%), Positives = 416/452 (92%)
Frame = +2
Query: 227 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPH 406
MPLFATNPFDQDVEKATSEMNTAEDWG ILDICDKVGQSRTGPKDCLRS+MRRVNHKDPH
Sbjct: 1 MPLFATNPFDQDVEKATSEMNTAEDWGHILDICDKVGQSRTGPKDCLRSIMRRVNHKDPH 60
Query: 407 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 586
VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK
Sbjct: 61 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 120
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI 766
NDPQLSLISAMIKNLKEQGVTFPAIGSQAA+QAKASPALVAKDPGTVANKKEEEDLAKAI
Sbjct: 121 NDPQLSLISAMIKNLKEQGVTFPAIGSQAADQAKASPALVAKDPGTVANKKEEEDLAKAI 180
Query: 767 ELSLKEQRQQXXXXXXXXXXXXXXXXNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL 946
ELSLKEQRQQ NHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL
Sbjct: 181 ELSLKEQRQQSTTLSTLYPSTSNLLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL 240
Query: 947 DDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQA 1126
DDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQA
Sbjct: 241 DDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQA 300
Query: 1127 YIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL 1306
+IDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL
Sbjct: 301 FIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL 360
Query: 1307 NGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPPSSRCLLVAGTA 1486
N KVMEALSLYTKLMNEDPMYSMYAKLQNQQYY+QSSGVSGSQVYPGPP S LVAG+A
Sbjct: 361 NVKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYMQSSGVSGSQVYPGPPQSGTYLVAGSA 420
Query: 1487 QMSHLQTYSLPQSSCLPLAQEGFHRPPAQPFL 1582
QMSHLQ+YSLP L+Q G P P L
Sbjct: 421 QMSHLQSYSLPPEQLSSLSQ-GAVPPSVNPAL 451
>ref|XP_533357.2| PREDICTED: similar to Signal transducing adapter molecule 2 (STAM-2)
[Canis familiaris].
Length = 659
Score = 483 bits (1244), Expect = e-136
Identities = 258/448 (57%), Positives = 312/448 (69%), Gaps = 9/448 (2%)
Frame = +2
Query: 266 EKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQALTLLGACV 445
EKAT+E NT EDW LI+DICDKVG + G KDCL+++M+RVNHK PHVA+QALTLLGACV
Sbjct: 148 EKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACV 207
Query: 446 SNCGKIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMI 622
+NCGKIFHLEVCSRDFA+EV V+ NK HPKVCEKLK+LMVEW++EF+ DPQ SLISA I
Sbjct: 208 ANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATI 267
Query: 623 KNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANK-KEEEDLAKAIELSLKEQRQQX 799
K++KE+G+TFP GSQ A + GT +NK KE+ED+AKAIELSL+EQ+QQ
Sbjct: 268 KSMKEEGITFPPAGSQTVSAAAKN--------GTSSNKNKEDEDIAKAIELSLQEQKQQH 319
Query: 800 XXXXXXXXXXXXXXXNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE 979
N RKVRA+YDFEA EDNELTFK GEII VLDDSD NWWKGE
Sbjct: 320 AETKSLYPSAEIQLNNKV--ARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE 377
Query: 980 THQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQAYIDEDKMDQLL 1159
H+G+GLFPSNFVT +L EPE +K V ++ +++ EPEP YIDEDKMD+ L
Sbjct: 378 NHRGIGLFPSNFVTTNLNIEPEAAAVDKLDVTEEEEEEIKKSEPEP--VYIDEDKMDRAL 435
Query: 1160 QMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSELNGKVMEALSLY 1339
Q+LQS DP+D +PD +LL LE +C QMGP+IDEKLE+IDRKHSELSELN KV+EAL LY
Sbjct: 436 QVLQSIDPTDAKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELSELNVKVLEALELY 495
Query: 1340 TKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPPSSRCLLVAGTAQMSHLQTYSL- 1516
+L+NE P+Y +Y KL +Y SS Q YP P + G Q++ Q+YSL
Sbjct: 496 NRLVNEAPVYPVYTKLHPPAHYPPSSAGVPMQTYPVPSHGGNYMGQGIHQVTVAQSYSLG 555
Query: 1517 -----PQSSCLPLAQEGFHRPPAQ-PFL 1582
P S P PAQ P+L
Sbjct: 556 PDQIGPLRSLPPNVNSSVTTQPAQTPYL 583
>ref|XP_862324.1| PREDICTED: similar to Target of Myb protein 1 isoform 2 [Canis
familiaris].
Length = 512
Score = 107 bits (266), Expect = 4e-23
Identities = 57/143 (39%), Positives = 87/143 (60%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRR-VNHKDPHVAMQ 418
++P Q +EKAT +EDW L ++ICD + ++ GPKD R+V +R V +K+ H M
Sbjct: 10 SSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIVGNKNFHEVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FHL V S+DF V +L K +P V +K+ L+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHLLVASQDFVEGVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + A+ ++L+ +G+ FP
Sbjct: 130 SSPDLTGVVAVYEDLRRKGLEFP 152
>ref|XP_864623.1| PREDICTED: similar to target of myb1-like 2 isoform 11 [Canis
familiaris].
Length = 488
Score = 102 bits (254), Expect = 1e-21
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R+N +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V +RDF V + K +P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAK-DPGTVANKKEEEDLAKA 763
+ P L+ + + + LK +GV FP A V + DP T + + + A
Sbjct: 130 SSPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPATTMPRSQSQQRTSA 189
Query: 764 IELS 775
S
Sbjct: 190 SSYS 193
>ref|XP_864606.1| PREDICTED: similar to target of myb1-like 2 isoform 10 [Canis
familiaris].
Length = 529
Score = 102 bits (254), Expect = 1e-21
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R+N +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V +RDF V + K +P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAK-DPGTVANKKEEEDLAKA 763
+ P L+ + + + LK +GV FP A V + DP T + + + A
Sbjct: 130 SSPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPATTMPRSQSQQRTSA 189
Query: 764 IELS 775
S
Sbjct: 190 SSYS 193
>ref|XP_864586.1| PREDICTED: similar to target of myb1-like 2 isoform 9 [Canis
familiaris].
Length = 493
Score = 102 bits (254), Expect = 1e-21
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R+N +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V +RDF V + K +P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAK-DPGTVANKKEEEDLAKA 763
+ P L+ + + + LK +GV FP A V + DP T + + + A
Sbjct: 130 SSPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPATTMPRSQSQQRTSA 189
Query: 764 IELS 775
S
Sbjct: 190 SSYS 193
>ref|XP_546659.2| PREDICTED: similar to target of myb1-like 2 isoform 4 [Canis
familiaris].
Length = 508
Score = 102 bits (254), Expect = 1e-21
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R+N +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V +RDF V + K +P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAK-DPGTVANKKEEEDLAKA 763
+ P L+ + + + LK +GV FP A V + DP T + + + A
Sbjct: 130 SSPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPATTMPRSQSQQRTSA 189
Query: 764 IELS 775
S
Sbjct: 190 SSYS 193
>ref|XP_864554.1| PREDICTED: similar to target of myb1-like 2 isoform 7 [Canis
familiaris].
Length = 473
Score = 100 bits (250), Expect = 3e-21
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 11/188 (5%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R+N +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V +RDF V + K +P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQA------AEQAKASPALVAKDPGTVANKKEEE 748
+ P L+ + + + LK +GV FP A ++ +PAL P +AN ++
Sbjct: 130 SSPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQRTYLAPALSVTGP-IMANSEQIA 188
Query: 749 DLAKAIEL 772
L +++
Sbjct: 189 RLRSELDV 196
>ref|XP_864538.1| PREDICTED: similar to target of myb1-like 2 isoform 6 [Canis
familiaris].
Length = 505
Score = 100 bits (249), Expect = 4e-21
Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 5/174 (2%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R+N +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V +RDF V + K +P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEE 748
+ P L+ + + + LK +GV FP A +P V+ T A ++ +E
Sbjct: 130 SSPDLTGVVHIYEELKRKGVEFPMADLDALSPIH-TPQRVSLQATTPAFQRPQE 182
>ref|XP_864572.1| PREDICTED: similar to target of myb1-like 2 isoform 8 [Canis
familiaris].
Length = 514
Score = 100 bits (248), Expect = 5e-21
Identities = 54/143 (37%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R+N +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V +RDF V + K +P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + + + LK +GV FP
Sbjct: 130 SSPDLTGVVHIYEELKRKGVEFP 152
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,795,339
Number of extensions: 1322536
Number of successful extensions: 4491
Number of sequences better than 1.0e-05: 94
Number of HSP's gapped: 4382
Number of HSP's successfully gapped: 105
Length of query: 534
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 426
Effective length of database: 15,274,216
Effective search space: 6506816016
Effective search space used: 6506816016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009110
(1604 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361358.1| PREDICTED: signal transducing adapter molecu... 828 0.0
Alignment gi|XP_003130772.2| PREDICTED: signal transducing adapter molecu... 688 0.0
Alignment gi|XP_001927044.3| PREDICTED: signal transducing adapter molecu... 477 e-135
Alignment gi|XP_003358157.1| PREDICTED: TOM1-like protein 1 [Sus scrofa]. 78 2e-14
Alignment gi|XP_003360628.1| PREDICTED: target of Myb protein 1-like, par... 74 2e-13
Alignment gi|XP_003126054.1| PREDICTED: GRB2-related adapter protein 2-li... 74 2e-13
Alignment gi|XP_003126048.1| PREDICTED: GRB2-related adapter protein 2-li... 74 2e-13
Alignment gi|XP_003131257.1| PREDICTED: ADP-ribosylation factor-binding p... 73 4e-13
Alignment gi|NP_001131100.1| growth factor receptor-bound protein 2 [Sus ... 70 4e-12
Alignment gi|XP_003358994.1| PREDICTED: intersectin-1-like [Sus scrofa]. 68 1e-11
>ref|XP_003361358.1| PREDICTED: signal transducing adapter molecule 1-like, partial [Sus
scrofa].
Length = 536
Score = 828 bits (2139), Expect = 0.0
Identities = 418/452 (92%), Positives = 419/452 (92%)
Frame = +2
Query: 227 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPH 406
MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPH
Sbjct: 1 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPH 60
Query: 407 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 586
VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK
Sbjct: 61 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 120
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI 766
NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI
Sbjct: 121 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI 180
Query: 767 ELSLKEQRQQXXXXXXXXXXXXXXXXNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL 946
ELSLKEQRQQ NHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL
Sbjct: 181 ELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL 240
Query: 947 DDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQA 1126
DDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQA
Sbjct: 241 DDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQA 300
Query: 1127 YIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL 1306
YIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL
Sbjct: 301 YIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL 360
Query: 1307 NGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPPSSRCLLVAGTA 1486
NGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPP S LVAGTA
Sbjct: 361 NGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPPQSGAYLVAGTA 420
Query: 1487 QMSHLQTYSLPQSSCLPLAQEGFHRPPAQPFL 1582
QMSHLQTYSLP L+ G PPA P L
Sbjct: 421 QMSHLQTYSLPPEQLSSLSPGGV-PPPASPAL 451
>ref|XP_003130772.2| PREDICTED: signal transducing adapter molecule 1 [Sus scrofa].
Length = 632
Score = 688 bits (1776), Expect = 0.0
Identities = 345/361 (95%), Positives = 345/361 (95%)
Frame = +2
Query: 353 PKDCLRSVMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHP 532
PKDCLRSVMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHP
Sbjct: 45 PKDCLRSVMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHP 104
Query: 533 KVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAK 712
KVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAK
Sbjct: 105 KVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAK 164
Query: 713 DPGTVANKKEEEDLAKAIELSLKEQRQQXXXXXXXXXXXXXXXXNHQHEGRKVRAIYDFE 892
DPGTVANKKEEEDLAKAIELSLKEQRQQ NHQHEGRKVRAIYDFE
Sbjct: 165 DPGTVANKKEEEDLAKAIELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFE 224
Query: 893 AAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTV 1072
AAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTV
Sbjct: 225 AAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTV 284
Query: 1073 QFSDDVQVETIEPEPEQAYIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPL 1252
QFSDDVQVETIEPEPEQAYIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPL
Sbjct: 285 QFSDDVQVETIEPEPEQAYIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPL 344
Query: 1253 IDEKLEDIDRKHSELSELNGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGS 1432
IDEKLEDIDRKHSELSELNGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGS
Sbjct: 345 IDEKLEDIDRKHSELSELNGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGS 404
Query: 1433 Q 1435
Q
Sbjct: 405 Q 405
>ref|XP_001927044.3| PREDICTED: signal transducing adapter molecule 2, partial [Sus
scrofa].
Length = 512
Score = 477 bits (1227), Expect = e-135
Identities = 248/425 (58%), Positives = 302/425 (71%), Gaps = 1/425 (0%)
Frame = +2
Query: 269 KATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQALTLLGACVS 448
KAT+E NT EDW LI+DICDKVG + G KDCL+++M+RVNHK PHVA+QALTLLGACV+
Sbjct: 1 KATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVA 60
Query: 449 NCGKIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIK 625
NCGKIFHLEVCSRDFA+EV V+ NK HPKVCEKLK+LMVEW++EF+ DPQ SLISA IK
Sbjct: 61 NCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIK 120
Query: 626 NLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAIELSLKEQRQQXXX 805
++KE+G+TFP GSQ A AK+ + KE+ED+AKAIELSL+EQ+QQ
Sbjct: 121 SMKEEGITFPPAGSQTVSAA-------AKNGMSSNKNKEDEDIAKAIELSLQEQKQQHTE 173
Query: 806 XXXXXXXXXXXXXNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH 985
N RKVRA+YDFEA EDNELTFK GEII VLDDSD NWWKGE H
Sbjct: 174 TKSLYPSAEIQLNNKV--ARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENH 231
Query: 986 QGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQAYIDEDKMDQLLQM 1165
+G+GLFPSNFVT +L E E +K + ++ + E + EPE YIDEDKMD+ LQ+
Sbjct: 232 RGIGLFPSNFVTTNLNIESEAAAVDKLNI--IEEEEEENKKSEPEPVYIDEDKMDRALQV 289
Query: 1166 LQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSELNGKVMEALSLYTK 1345
LQS DP+D +PD +LL LE +C QMGP+IDEKLE+IDRKHSELSELN KV+EAL LY K
Sbjct: 290 LQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELSELNVKVLEALELYNK 349
Query: 1346 LMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPPSSRCLLVAGTAQMSHLQTYSLPQS 1525
L+NE P+YS+Y+KL + +Y SS Q YP P + Q++ Q+YSL
Sbjct: 350 LVNESPVYSVYSKLHHSGHYPPSSAGVPVQTYPVQPHGGNYMGQSIHQVTVAQSYSLGPD 409
Query: 1526 SCLPL 1540
PL
Sbjct: 410 QIGPL 414
>ref|XP_003358157.1| PREDICTED: TOM1-like protein 1 [Sus scrofa].
Length = 632
Score = 77.8 bits (190), Expect = 2e-14
Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 5/159 (3%)
Frame = +2
Query: 257 QDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQ-ALTLL 433
Q +EKAT EDWG + ICD + ++ GPKD ++++ +R++ H +Q L+L+
Sbjct: 17 QLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLI 76
Query: 434 GACVSNCGKIFHLEVCSRDFASE-VSNVLNKGHP---KVCEKLKALMVEWTDEFKNDPQL 601
CV NCG FH + ++F + ++ +LN + + ++ + + W+ F +
Sbjct: 77 DMCVQNCGPRFHSLIVKKEFVKDSLAKLLNPRYTLPVDIQNRILSFIKTWSQGFPGGVDV 136
Query: 602 SLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDP 718
S + + +L ++GV FP + AE A+ A ++ +P
Sbjct: 137 SEVKEVYLDLLKKGVQFP-LSQAEAETARQEIAQISPNP 174
>ref|XP_003360628.1| PREDICTED: target of Myb protein 1-like, partial [Sus scrofa].
Length = 325
Score = 73.9 bits (180), Expect = 2e-13
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Frame = +2
Query: 302 WGLILDICDKVGQSRTGPKDCLRSVMRR-VNHKDPHVAMQALTLLGA---CV--SNCGKI 463
W L ++ICD + ++ GPKD R+V +R V +K+ H M ALT+ + C+ NCG
Sbjct: 1 WALNMEICDIINETEEGPKDAFRAVKKRIVGNKNFHEVMLALTVTASPLDCIRXKNCGHR 60
Query: 464 FHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFKNDPQLSLISAMIKNL 631
FH+ V S+DF V +L K +P V +K+ L+ W D F++ P L+
Sbjct: 61 FHVLVASQDFVEGVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTXXXXXXXXX 120
Query: 632 KEQGVTFP 655
+ +G+ FP
Sbjct: 121 RRKGLEFP 128
>ref|XP_003126054.1| PREDICTED: GRB2-related adapter protein 2-like [Sus scrofa].
Length = 320
Score = 73.9 bits (180), Expect = 2e-13
Identities = 30/52 (57%), Positives = 40/52 (76%)
Frame = +2
Query: 863 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFV 1018
R RA+YDFEA ED+EL F+ GE++ VLD S+P+WW G H +GLFP+N+V
Sbjct: 264 RWARALYDFEALEDDELGFQCGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 315
>ref|XP_003126048.1| PREDICTED: GRB2-related adapter protein 2-like [Sus scrofa].
Length = 320
Score = 73.9 bits (180), Expect = 2e-13
Identities = 30/52 (57%), Positives = 40/52 (76%)
Frame = +2
Query: 863 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFV 1018
R RA+YDFEA ED+EL F+ GE++ VLD S+P+WW G H +GLFP+N+V
Sbjct: 264 RWARALYDFEALEDDELGFQCGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 315
>ref|XP_003131257.1| PREDICTED: ADP-ribosylation factor-binding protein GGA3 isoform 1
[Sus scrofa].
Length = 719
Score = 73.2 bits (178), Expect = 4e-13
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 6/134 (4%)
Frame = +2
Query: 263 VEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQALTLLGAC 442
+ KAT+ N EDW I+ CD++ + GP+ +R + ++ A+QALT+L AC
Sbjct: 13 LNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEAVQALTVLEAC 72
Query: 443 VSNCGKIFHLEVCSRDFASEVSNVLNKGH--PKVCEKLKALMVE----WTDEFKNDPQLS 604
+ NCG+ FH EV F +E+ V++ + +V EK+K ++E WT + S
Sbjct: 73 MKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTLALAEE---S 129
Query: 605 LISAMIKNLKEQGV 646
I LK QG+
Sbjct: 130 KIKDAYHMLKRQGI 143
>ref|NP_001131100.1| growth factor receptor-bound protein 2 [Sus scrofa].
Length = 217
Score = 69.7 bits (169), Expect = 4e-12
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +2
Query: 869 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFVT 1021
V+A++DF+ ED EL F+ G+ I V+D+SDPNWWKG H G+FP N+VT
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 211
Score = 48.9 bits (115), Expect = 8e-06
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +2
Query: 875 AIYDFEAAEDNELTFKAGEIITVL-DDSDPNWWKGETHQGMGLFPSNFV 1018
A YDF+A D+EL+FK G+I+ VL ++ D NW+K E + G P N++
Sbjct: 5 AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 53
>ref|XP_003358994.1| PREDICTED: intersectin-1-like [Sus scrofa].
Length = 899
Score = 68.2 bits (165), Expect = 1e-11
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = +2
Query: 866 KVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFVTADLTAEP 1042
+V +YD+ A D+EL F G++I VL+ DP+WWKGE H +GLFPSN+V +P
Sbjct: 789 QVIGMYDYTAQNDDELAFNKGQVINVLNKEDPDWWKGEVHGQVGLFPSNYVKLTTDMDP 847
Score = 48.9 bits (115), Expect = 8e-06
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +2
Query: 857 EGRKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFV 1018
EG + +A+Y + A +DN L F ++ITVL+ D WW GE G FP ++V
Sbjct: 615 EGLQAQALYPWRAKKDNHLNFNKNDVITVLEQQD-MWWFGEVQGQKGWFPKSYV 667
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,954,633
Number of extensions: 849871
Number of successful extensions: 2728
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 2685
Number of HSP's successfully gapped: 48
Length of query: 534
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 430
Effective length of database: 8,754,644
Effective search space: 3764496920
Effective search space used: 3764496920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009110
(1604 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035614.1| signal transducing adapter molecule 1 [Mus musc... 792 0.0
Alignment gi|NP_062641.1| signal transducing adapter molecule 2 [Mus musc... 497 e-140
Alignment gi|NP_001129731.1| target of Myb protein 1 isoform 2 [Mus muscu... 105 1e-22
Alignment gi|NP_035752.1| target of Myb protein 1 isoform 1 [Mus musculus]. 105 1e-22
Alignment gi|NP_001034182.1| TOM1-like protein 2 isoform c [Mus musculus]. 99 1e-20
Alignment gi|NP_694720.2| TOM1-like protein 2 isoform a [Mus musculus]. 99 1e-20
Alignment gi|NP_001034181.1| TOM1-like protein 2 isoform b [Mus musculus]. 99 1e-20
Alignment gi|NP_001152800.1| hepatocyte growth factor-regulated tyrosine ... 90 6e-18
Alignment gi|NP_032270.3| hepatocyte growth factor-regulated tyrosine kin... 90 6e-18
Alignment gi|NP_034945.1| GRB2-related adaptor protein 2 [Mus musculus]. 73 6e-13
>ref|NP_035614.1| signal transducing adapter molecule 1 [Mus musculus].
Length = 548
Score = 792 bits (2045), Expect = 0.0
Identities = 393/440 (89%), Positives = 408/440 (92%)
Frame = +2
Query: 227 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPH 406
MPLFATNPFDQDVEKATSE+NTAEDWGLILDICDKVGQSRTGPKDCLRS+MRRVNHKDPH
Sbjct: 1 MPLFATNPFDQDVEKATSELNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPH 60
Query: 407 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 586
VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK
Sbjct: 61 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 120
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI 766
NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVA KKEEEDLAKAI
Sbjct: 121 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVATKKEEEDLAKAI 180
Query: 767 ELSLKEQRQQXXXXXXXXXXXXXXXXNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL 946
ELSLKEQRQQ NHQHEGRKVRA+YDFEAAEDNELTFKAGEIITVL
Sbjct: 181 ELSLKEQRQQSAPVSTLYPSTSNLLTNHQHEGRKVRAVYDFEAAEDNELTFKAGEIITVL 240
Query: 947 DDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQA 1126
DDSDPNWWKGETHQG+GLFPSNFVTADLTAEPEMIKTEKKTVQF+DDVQ+ETIEPEPE A
Sbjct: 241 DDSDPNWWKGETHQGVGLFPSNFVTADLTAEPEMIKTEKKTVQFNDDVQIETIEPEPEPA 300
Query: 1127 YIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL 1306
+IDEDKMDQLLQMLQSTDPSD+QPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL
Sbjct: 301 FIDEDKMDQLLQMLQSTDPSDNQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL 360
Query: 1307 NGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPPSSRCLLVAGTA 1486
N KVMEALSLYTKLMNEDPMYSMYAKLQ+QQYY+QSS VS SQVYPGP S LVAG+A
Sbjct: 361 NVKVMEALSLYTKLMNEDPMYSMYAKLQSQQYYLQSSAVSASQVYPGPAQSGTYLVAGSA 420
Query: 1487 QMSHLQTYSLPQSSCLPLAQ 1546
QM+HLQ+YSLP ++Q
Sbjct: 421 QMTHLQSYSLPPEQLSSISQ 440
>ref|NP_062641.1| signal transducing adapter molecule 2 [Mus musculus].
Length = 523
Score = 497 bits (1279), Expect = e-140
Identities = 259/431 (60%), Positives = 315/431 (73%), Gaps = 1/431 (0%)
Frame = +2
Query: 227 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPH 406
MPLF NPF+QDVEKAT+E NT EDW LI+DICD+VG + +G KDCL+++M+RVNHK PH
Sbjct: 1 MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDRVGSTPSGAKDCLKAIMKRVNHKVPH 60
Query: 407 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDEF 583
VA+QALTLLGACV+NCGKIFHLEVCSRDFA+EV +V+ NK HPKVCEKLK+LMVEW++EF
Sbjct: 61 VALQALTLLGACVANCGKIFHLEVCSRDFATEVRSVIKNKAHPKVCEKLKSLMVEWSEEF 120
Query: 584 KNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKA 763
+ DPQ SLISA IK++KE+GVTFP+ GSQ A AK+ ++ KE+ED+AKA
Sbjct: 121 QKDPQFSLISATIKSMKEEGVTFPSAGSQTV-------AAAAKNGTSLNKNKEDEDIAKA 173
Query: 764 IELSLKEQRQQXXXXXXXXXXXXXXXXNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITV 943
IELSL+EQ+QQ N R+VRA+YDFEA EDNELTFK GE+ITV
Sbjct: 174 IELSLQEQKQQYTETKALYPPAESQLNN--KAARRVRALYDFEAVEDNELTFKHGELITV 231
Query: 944 LDDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQ 1123
LDDSD NWW+GE H+G GLFPSNFVT DL+ E E +K V DDV+ E + EPE
Sbjct: 232 LDDSDANWWQGENHRGTGLFPSNFVTTDLSTEVETATVDKLNV-IDDDVE-EIKKSEPEP 289
Query: 1124 AYIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSE 1303
YIDE KMD+ LQ+LQS DP + +PD +LL LE +C QMGP+IDEKLE+IDRKHSELSE
Sbjct: 290 VYIDEGKMDRALQILQSIDPKESKPDSQDLLDLEDVCQQMGPMIDEKLEEIDRKHSELSE 349
Query: 1304 LNGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPPSSRCLLVAGT 1483
LN KV+EAL LY KL+NE P+YS+Y+KL Y ++GV Q YP L G
Sbjct: 350 LNVKVLEALDLYNKLVNEAPVYSVYSKLHPAHYPPAAAGVP-VQTYPVQSHGGNYLGHGI 408
Query: 1484 AQMSHLQTYSL 1516
Q+S Q Y+L
Sbjct: 409 HQVSVAQNYNL 419
>ref|NP_001129731.1| target of Myb protein 1 isoform 2 [Mus musculus].
Length = 516
Score = 105 bits (261), Expect = 1e-22
Identities = 54/143 (37%), Positives = 87/143 (60%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRV-NHKDPHVAMQ 418
++P Q +EKAT +EDW L ++ICD + ++ GPKD R+V +R+ +K+ H M
Sbjct: 10 SSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V ++DF V +L K +P V +K+ L+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + A+ ++L+ +G+ FP
Sbjct: 130 SSPDLTGVVAVYEDLRRKGLEFP 152
>ref|NP_035752.1| target of Myb protein 1 isoform 1 [Mus musculus].
Length = 492
Score = 105 bits (261), Expect = 1e-22
Identities = 54/143 (37%), Positives = 87/143 (60%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRV-NHKDPHVAMQ 418
++P Q +EKAT +EDW L ++ICD + ++ GPKD R+V +R+ +K+ H M
Sbjct: 10 SSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V ++DF V +L K +P V +K+ L+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + A+ ++L+ +G+ FP
Sbjct: 130 SSPDLTGVVAVYEDLRRKGLEFP 152
>ref|NP_001034182.1| TOM1-like protein 2 isoform c [Mus musculus].
Length = 440
Score = 98.6 bits (244), Expect = 1e-20
Identities = 53/143 (37%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R++ +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FHL V +RDF V + K +P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + + + LK +G+ FP
Sbjct: 130 SSPDLTGVVHIYEELKRRGIEFP 152
>ref|NP_694720.2| TOM1-like protein 2 isoform a [Mus musculus].
Length = 507
Score = 98.6 bits (244), Expect = 1e-20
Identities = 53/143 (37%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R++ +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FHL V +RDF V + K +P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + + + LK +G+ FP
Sbjct: 130 SSPDLTGVVHIYEELKRRGIEFP 152
>ref|NP_001034181.1| TOM1-like protein 2 isoform b [Mus musculus].
Length = 487
Score = 98.6 bits (244), Expect = 1e-20
Identities = 53/143 (37%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R++ +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FHL V +RDF V + K +P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + + + LK +G+ FP
Sbjct: 130 SSPDLTGVVHIYEELKRRGIEFP 152
>ref|NP_001152800.1| hepatocyte growth factor-regulated tyrosine kinase substrate
isoform 1 [Mus musculus].
Length = 776
Score = 89.7 bits (221), Expect = 6e-18
Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = +2
Query: 251 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQALTL 430
F++ ++KATS++ DW IL ICD + Q T K + S+ ++VN K+PHVA+ AL +
Sbjct: 8 FERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEV 67
Query: 431 LGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTDEFKNDPQLSL 607
+ + V NCG+ H EV ++ E+ +L + V K+ L+ W F+N+P+ +
Sbjct: 68 MESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKV 127
Query: 608 ISAMIKNLKEQGVTFP 655
+ + +K +G FP
Sbjct: 128 VQDTYQIMKVEGHVFP 143
>ref|NP_032270.3| hepatocyte growth factor-regulated tyrosine kinase substrate
isoform 2 [Mus musculus].
Length = 775
Score = 89.7 bits (221), Expect = 6e-18
Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = +2
Query: 251 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQALTL 430
F++ ++KATS++ DW IL ICD + Q T K + S+ ++VN K+PHVA+ AL +
Sbjct: 8 FERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEV 67
Query: 431 LGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTDEFKNDPQLSL 607
+ + V NCG+ H EV ++ E+ +L + V K+ L+ W F+N+P+ +
Sbjct: 68 MESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKV 127
Query: 608 ISAMIKNLKEQGVTFP 655
+ + +K +G FP
Sbjct: 128 VQDTYQIMKVEGHVFP 143
>ref|NP_034945.1| GRB2-related adaptor protein 2 [Mus musculus].
Length = 322
Score = 73.2 bits (178), Expect = 6e-13
Identities = 29/52 (55%), Positives = 41/52 (78%)
Frame = +2
Query: 863 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGMGLFPSNFV 1018
R RA+YDFEA E++EL F++GE++ VLD S+P+WW G H +GLFP+N+V
Sbjct: 266 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 317
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,880,597
Number of extensions: 1111973
Number of successful extensions: 3703
Number of sequences better than 1.0e-05: 63
Number of HSP's gapped: 3640
Number of HSP's successfully gapped: 66
Length of query: 534
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 428
Effective length of database: 12,433,743
Effective search space: 5321642004
Effective search space used: 5321642004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009110
(1604 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003464.1| signal transducing adapter molecule 1 [Homo sap... 805 0.0
Alignment gi|NP_005834.4| signal transducing adapter molecule 2 [Homo sap... 500 e-141
Alignment gi|NP_001129204.1| target of Myb protein 1 isoform 2 [Homo sapi... 106 5e-23
Alignment gi|NP_005479.1| target of Myb protein 1 isoform 1 [Homo sapiens]. 106 5e-23
Alignment gi|NP_001076437.1| TOM1-like protein 2 isoform 3 [Homo sapiens]. 100 5e-21
Alignment gi|NP_004703.1| hepatocyte growth factor-regulated tyrosine kin... 90 5e-18
Alignment gi|NP_001129201.1| target of Myb protein 1 isoform 3 [Homo sapi... 88 3e-17
Alignment gi|NP_001129202.1| target of Myb protein 1 isoform 4 [Homo sapi... 85 2e-16
Alignment gi|NP_005477.2| TOM1-like protein 1 [Homo sapiens]. 75 1e-13
Alignment gi|NP_619525.1| ADP-ribosylation factor-binding protein GGA3 is... 75 2e-13
>ref|NP_003464.1| signal transducing adapter molecule 1 [Homo sapiens].
Length = 540
Score = 805 bits (2079), Expect = 0.0
Identities = 407/452 (90%), Positives = 413/452 (91%)
Frame = +2
Query: 227 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPH 406
MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRS+MRRVNHKDPH
Sbjct: 1 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPH 60
Query: 407 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 586
VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK
Sbjct: 61 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 120
Query: 587 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI 766
NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI
Sbjct: 121 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI 180
Query: 767 ELSLKEQRQQXXXXXXXXXXXXXXXXNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL 946
ELSLKEQRQQ NHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL
Sbjct: 181 ELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL 240
Query: 947 DDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEQA 1126
DDSDPNWWKGETHQG+GLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPE A
Sbjct: 241 DDSDPNWWKGETHQGIGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEPA 300
Query: 1127 YIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL 1306
+IDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL
Sbjct: 301 FIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL 360
Query: 1307 NGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPPSSRCLLVAGTA 1486
N KVMEALSLYTKLMNEDPMYSMYAKLQNQ YY+QSSGVSGSQVY GPP S LVAG A
Sbjct: 361 NVKVMEALSLYTKLMNEDPMYSMYAKLQNQPYYMQSSGVSGSQVYAGPPPSGAYLVAGNA 420
Query: 1487 QMSHLQTYSLPQSSCLPLAQEGFHRPPAQPFL 1582
QMSHLQ+YSLP L+Q P A P L
Sbjct: 421 QMSHLQSYSLPPEQLSSLSQ-AVVPPSANPAL 451
>ref|NP_005834.4| signal transducing adapter molecule 2 [Homo sapiens].
Length = 525
Score = 500 bits (1287), Expect = e-141
Identities = 263/440 (59%), Positives = 315/440 (71%), Gaps = 2/440 (0%)
Frame = +2
Query: 227 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPH 406
MPLF NPF+QDVEKAT+E NT EDW LI+DICDKVG + G KDCL+++M+RVNHK PH
Sbjct: 1 MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPH 60
Query: 407 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDEF 583
VA+QALTLLGACV+NCGKIFHLEVCSRDFA+EV V+ NK HPKVCEKLK+LMVEW++EF
Sbjct: 61 VALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 120
Query: 584 KNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANK-KEEEDLAK 760
+ DPQ SLISA IK++KE+G+TFP GSQ A + GT +NK KE+ED+AK
Sbjct: 121 QKDPQFSLISATIKSMKEEGITFPPAGSQTVSAAAKN--------GTSSNKNKEDEDIAK 172
Query: 761 AIELSLKEQRQQXXXXXXXXXXXXXXXXNHQHEGRKVRAIYDFEAAEDNELTFKAGEIIT 940
AIELSL+EQ+QQ N RKVRA+YDFEA EDNELTFK GEII
Sbjct: 173 AIELSLQEQKQQHTETKSLYPSSEIQLNN--KVARKVRALYDFEAVEDNELTFKHGEIII 230
Query: 941 VLDDSDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPE 1120
VLDDSD NWWKGE H+G+GLFPSNFVT +L E E +K V DDV+ E + EPE
Sbjct: 231 VLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAAVDKLNV-IDDDVE-EIKKSEPE 288
Query: 1121 QAYIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELS 1300
YIDEDKMD+ LQ+LQS DP+D +PD +LL LE +C QMGP+IDEKLE+IDRKHSELS
Sbjct: 289 PVYIDEDKMDRALQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELS 348
Query: 1301 ELNGKVMEALSLYTKLMNEDPMYSMYAKLQNQQYYIQSSGVSGSQVYPGPPSSRCLLVAG 1480
ELN KV+EAL LY KL+NE P+YS+Y+KL +Y +S Q YP +
Sbjct: 349 ELNVKVLEALELYNKLVNEAPVYSVYSKLHPPAHYPPASSGVPMQTYPVQSHGGNYMGQS 408
Query: 1481 TAQMSHLQTYSLPQSSCLPL 1540
Q++ Q+YSL PL
Sbjct: 409 IHQVTVAQSYSLGPDQIGPL 428
>ref|NP_001129204.1| target of Myb protein 1 isoform 2 [Homo sapiens].
Length = 493
Score = 106 bits (265), Expect = 5e-23
Identities = 56/143 (39%), Positives = 87/143 (60%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRR-VNHKDPHVAMQ 418
++P Q +EKAT +EDW L ++ICD + ++ GPKD LR+V +R V +K+ H M
Sbjct: 10 SSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V S+DF V +L K +P V +K+ L+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + + ++L+ +G+ FP
Sbjct: 130 SSPDLTGVVTIYEDLRRKGLEFP 152
>ref|NP_005479.1| target of Myb protein 1 isoform 1 [Homo sapiens].
Length = 492
Score = 106 bits (265), Expect = 5e-23
Identities = 56/143 (39%), Positives = 87/143 (60%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRR-VNHKDPHVAMQ 418
++P Q +EKAT +EDW L ++ICD + ++ GPKD LR+V +R V +K+ H M
Sbjct: 10 SSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V S+DF V +L K +P V +K+ L+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + + ++L+ +G+ FP
Sbjct: 130 SSPDLTGVVTIYEDLRRKGLEFP 152
>ref|NP_001076437.1| TOM1-like protein 2 isoform 3 [Homo sapiens].
Length = 507
Score = 100 bits (248), Expect = 5e-21
Identities = 54/143 (37%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVN-HKDPHVAMQ 418
+ P Q +EKAT +EDW L ++ICD + ++ GPKD +R++ +R+N +++ M
Sbjct: 10 STPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFK 586
ALT+L CV NCG FH+ V +RDF V + K +P V +K+ AL+ W D F+
Sbjct: 70 ALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFR 129
Query: 587 NDPQLSLISAMIKNLKEQGVTFP 655
+ P L+ + + + LK +GV FP
Sbjct: 130 SSPDLTGVVHIYEELKRKGVEFP 152
>ref|NP_004703.1| hepatocyte growth factor-regulated tyrosine kinase substrate [Homo
sapiens].
Length = 777
Score = 90.1 bits (222), Expect = 5e-18
Identities = 45/136 (33%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Frame = +2
Query: 251 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQALTL 430
F++ ++KATS++ DW IL ICD + Q T K + S+ ++VN K+PHVA+ AL +
Sbjct: 8 FERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEV 67
Query: 431 LGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTDEFKNDPQLSL 607
+ + V NCG+ H EV ++ E+ ++L + V K+ L+ W F+N+P+ +
Sbjct: 68 MESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKV 127
Query: 608 ISAMIKNLKEQGVTFP 655
+ + +K +G FP
Sbjct: 128 VQDTYQIMKVEGHVFP 143
>ref|NP_001129201.1| target of Myb protein 1 isoform 3 [Homo sapiens].
Length = 460
Score = 87.8 bits (216), Expect = 3e-17
Identities = 46/119 (38%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Frame = +2
Query: 314 LDICDKVGQSRTGPKDCLRSVMRR-VNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRD 490
++ICD + ++ GPKD LR+V +R V +K+ H M ALT+L CV NCG FH+ V S+D
Sbjct: 1 MEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQD 60
Query: 491 FASE--VSNVLNKGHPK--VCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQGVTFP 655
F V +L K +P V +K+ L+ W D F++ P L+ + + ++L+ +G+ FP
Sbjct: 61 FVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFP 119
>ref|NP_001129202.1| target of Myb protein 1 isoform 4 [Homo sapiens].
Length = 447
Score = 85.1 bits (209), Expect = 2e-16
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Frame = +2
Query: 242 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRR-VNHKDPHVAMQ 418
++P Q +EKAT +EDW L ++ICD + ++ GPKD LR+V +R V +K+ H M
Sbjct: 10 SSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVML 69
Query: 419 ALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLNKGHP 532
ALT+L CV NCG FH+ V S+DF V +L K +P
Sbjct: 70 ALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNP 109
>ref|NP_005477.2| TOM1-like protein 1 [Homo sapiens].
Length = 476
Score = 75.5 bits (184), Expect = 1e-13
Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
Frame = +2
Query: 263 VEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQ-ALTLLGA 439
+EKAT EDWG + ICD + ++ GPKD ++++ +R++ H +Q L+L+
Sbjct: 19 IEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDM 78
Query: 440 CVSNCGKIFHLEVCSRDFASEVSNVLNKGHPK------VCEKLKALMVEWTDEFKNDPQL 601
CV NCG F + ++F E N++ +P+ + ++ + W+ F +
Sbjct: 79 CVQNCGPSFQSLIVKKEFVKE--NLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDV 136
Query: 602 SLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGT 724
S + + +L ++GV FP ++ AE A+ A ++ +P T
Sbjct: 137 SEVKEVYLDLVKKGVQFPPSEAE-AETARQETAQISSNPPT 176
>ref|NP_619525.1| ADP-ribosylation factor-binding protein GGA3 isoform long [Homo
sapiens].
Length = 723
Score = 74.7 bits (182), Expect = 2e-13
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 6/134 (4%)
Frame = +2
Query: 263 VEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQALTLLGAC 442
+ KAT+ N EDW I+ CD++ + GP+ +R + ++ A+QALT+L AC
Sbjct: 13 LNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEAC 72
Query: 443 VSNCGKIFHLEVCSRDFASEVSNVLNKGH--PKVCEKLKALMVE----WTDEFKNDPQLS 604
+ NCG+ FH EV F +E+ V++ + +V EK+K ++E WT P+ +
Sbjct: 73 MKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL---PEEA 129
Query: 605 LISAMIKNLKEQGV 646
I LK QG+
Sbjct: 130 KIKDAYHMLKRQGI 143
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,873,208
Number of extensions: 1313966
Number of successful extensions: 4601
Number of sequences better than 1.0e-05: 83
Number of HSP's gapped: 4523
Number of HSP's successfully gapped: 88
Length of query: 534
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,770,016
Effective search space: 6306796832
Effective search space used: 6306796832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009110
(1604 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118713.1| Sus scrofa unplaced genomic scaffold ChrUScaf1988 387 e-104
Sscrofa_Chr10 387 e-104
>gb|JH118713.1| Sus scrofa unplaced genomic scaffold ChrUScaf1988
Length = 61962
Score = 387 bits (195), Expect = e-104
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 760 agccatcgagttgtccctgaaggaacagaggcagcagtcaaccaccctttccactttgta 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43124 agccatcgagttgtccctgaaggaacagaggcagcagtcaaccaccctttccactttgta 43183
Query: 820 tcccagcacatccagcctcttaactaaccaccaacacgaaggccgaaaagttcgtgctat 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43184 tcccagcacatccagcctcttaactaaccaccaacacgaaggccgaaaagttcgtgctat 43243
Query: 880 atacgactttgaagctgctgaagataatgaacttacttttaaagctggagaaattattac 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43244 atacgactttgaagctgctgaagataatgaacttacttttaaagctggagaaattattac 43303
Query: 940 agttcttgatgacag 954
|||||||||||||||
Sbjct: 43304 agttcttgatgacag 43318
Score = 301 bits (152), Expect = 6e-79
Identities = 158/160 (98%)
Strand = Plus / Plus
Query: 1279 caggaagcattcagaactctctgaactcaatgggaaagtgatggaggcactttccttgta 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50504 caggaagcattcagaactctctgaactcaatgggaaagtgatggaggcactttccttgta 50563
Query: 1339 caccaagttgatgaatgaagacccaatgtattccatgtatgccaaactacagaatcaaca 1398
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 50564 caccaagttgatgaatgaagacccaatgtattccatgtatgcaaaactacagaatcaaca 50623
Query: 1399 gtattacattcagtcatctggtgtttctgggtctcaggta 1438
|||||||||||||||||||||||||||||| |||||||||
Sbjct: 50624 gtattacattcagtcatctggtgtttctggttctcaggta 50663
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 521 aagggtcatcctaaagtgtgtgaaaaattaaaagctcttatggttgagtggacagatgaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35360 aagggtcatcctaaagtgtgtgaaaaattaaaagctcttatggttgagtggacagatgaa 35419
Query: 581 tttaaaaatgatccacagctcagtctaatatcagcaatgattaagaacctgaaggaacaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35420 tttaaaaatgatccacagctcagtctaatatcagcaatgattaagaacctgaaggaacaa 35479
Query: 641 ggagttacatttccagctattggctctcagg 671
|||||||||||||||||||||||||||||||
Sbjct: 35480 ggagttacatttccagctattggctctcagg 35510
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 428 cttctaggagcatgtgtatcaaactgtggcaaaatttttcacttagaagtatgttcaaga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33379 cttctaggagcatgtgtatcaaactgtggcaaaatttttcacttagaagtatgttcaaga 33438
Query: 488 gattttgctagtgaagtaagcaacgtattaaacaagg 524
|||||||||||||||||||||||||||||||||||||
Sbjct: 33439 gattttgctagtgaagtaagcaacgtattaaacaagg 33475
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 953 agtgaccccaactggtggaaaggtgaaacccatcagggaatgggcttgtttccctctaat 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45032 agtgaccccaactggtggaaaggtgaaacccatcagggaatgggcttgtttccctctaat 45091
Query: 1013 tttgtgactgcagatctcactgctgaaccagaaatga 1049
|||||||||||||||||||||||||||||||||||||
Sbjct: 45092 tttgtgactgcagatctcactgctgaaccagaaatga 45128
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1137 aggataaaatggaccaattgctgcagatgttgcaaagcacagatcccagtgatgaccagc 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48633 aggataaaatggaccaattgctgcagatgttgcaaagcacagatcccagtgatgaccagc 48692
Query: 1197 cggatcttccagagttacttcatcttgaag 1226
||||||||||||||||||||||||||||||
Sbjct: 48693 cggatcttccagagttacttcatcttgaag 48722
Score = 176 bits (89), Expect = 2e-41
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 669 aggctgcagaacaagcaaaagcaagcccagctctggtagccaaggatcctgggactgtgg 728
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40693 aggctgcagaacaagcgaaagcaagcccagctctggtagccaaggatcctgggactgtgg 40752
Query: 729 ctaacaagaaagaagaagaagatttagcaaaag 761
|||||||||||||||||||||||||||||||||
Sbjct: 40753 ctaacaagaaagaagaagaagatttagcaaaag 40785
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 266 gagaaagcaaccagtgagatgaatactgctgaagattggggccttattttggacatttgt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15934 gagaaagcaaccagtgagatgaatactgctgaagattggggccttattttggacatttgt 15993
Query: 326 gataaagttggtcagtctcgcactgg 351
||||||||||||||||||||||||||
Sbjct: 15994 gataaagttggtcagtctcgcactgg 16019
Score = 153 bits (77), Expect = 4e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 351 gacctaaagattgtcttcgctctgttatgaggagggtgaaccacaaagaccctcacgttg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33221 gacctaaagattgtcttcgctctgttatgaggagggtgaaccacaaagaccctcacgttg 33280
Query: 411 ctatgcaggctctgact 427
|||||||||||||||||
Sbjct: 33281 ctatgcaggctctgact 33297
Score = 115 bits (58), Expect = 8e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 1225 agccatgtgtcaccagatgggacctctcattgatgaaaagctggaagatattgacagg 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49897 agccatgtgtcaccagatgggacctctcattgatgaaaagctggaagatattgacagg 49954
Score = 87.7 bits (44), Expect = 2e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 223 ggagatgcctctctttgccaccaacccctttgatcaggatgtgg 266
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagatgcctctctttgccaccaacccctttgatcaggatgtgg 44
>Sscrofa_Chr10
|| Length = 79102373
Score = 387 bits (195), Expect = e-104
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 760 agccatcgagttgtccctgaaggaacagaggcagcagtcaaccaccctttccactttgta 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48680427 agccatcgagttgtccctgaaggaacagaggcagcagtcaaccaccctttccactttgta 48680486
Query: 820 tcccagcacatccagcctcttaactaaccaccaacacgaaggccgaaaagttcgtgctat 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48680487 tcccagcacatccagcctcttaactaaccaccaacacgaaggccgaaaagttcgtgctat 48680546
Query: 880 atacgactttgaagctgctgaagataatgaacttacttttaaagctggagaaattattac 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48680547 atacgactttgaagctgctgaagataatgaacttacttttaaagctggagaaattattac 48680606
Query: 940 agttcttgatgacag 954
|||||||||||||||
Sbjct: 48680607 agttcttgatgacag 48680621
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 73 taattgggggtcggggagaggaggagctgccgaggtccccgtggactccgtctgcgtcgc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48632983 taattgggggtcggggagaggaggagctgccgaggtccccgtggactccgtctgcgtcgc 48633042
Query: 133 tgtttttgcctgagtagtctcctttcccacgtcccagcctgactcccgtgctgtcgaggg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48633043 tgtttttgcctgagtagtctcctttcccacgtcccagcctgactcccgtgctgtcgaggg 48633102
Query: 193 ggagtccctgcggacacctctgcacgcagtggagatgcctctctttgccaccaacccctt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48633103 ggagtccctgcggacacctctgcacgcagtggagatgcctctctttgccaccaacccctt 48633162
Query: 253 tgatcaggatgtgg 266
||||||||||||||
Sbjct: 48633163 tgatcaggatgtgg 48633176
Score = 301 bits (152), Expect = 6e-79
Identities = 158/160 (98%)
Strand = Plus / Plus
Query: 1279 caggaagcattcagaactctctgaactcaatgggaaagtgatggaggcactttccttgta 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48691142 caggaagcattcagaactctctgaactcaatgggaaagtgatggaggcactttccttgta 48691201
Query: 1339 caccaagttgatgaatgaagacccaatgtattccatgtatgccaaactacagaatcaaca 1398
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 48691202 caccaagttgatgaatgaagacccaatgtattccatgtatgcaaaactacagaatcaaca 48691261
Query: 1399 gtattacattcagtcatctggtgtttctgggtctcaggta 1438
|||||||||||||||||||||||||||||| |||||||||
Sbjct: 48691262 gtattacattcagtcatctggtgtttctggttctcaggta 48691301
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 521 aagggtcatcctaaagtgtgtgaaaaattaaaagctcttatggttgagtggacagatgaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48672667 aagggtcatcctaaagtgtgtgaaaaattaaaagctcttatggttgagtggacagatgaa 48672726
Query: 581 tttaaaaatgatccacagctcagtctaatatcagcaatgattaagaacctgaaggaacaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48672727 tttaaaaatgatccacagctcagtctaatatcagcaatgattaagaacctgaaggaacaa 48672786
Query: 641 ggagttacatttccagctattggctctcagg 671
|||||||||||||||||||||||||||||||
Sbjct: 48672787 ggagttacatttccagctattggctctcagg 48672817
Score = 202 bits (102), Expect = 4e-49
Identities = 158/173 (91%), Gaps = 3/173 (1%)
Strand = Plus / Plus
Query: 1434 aggtatatccgggccctccctcaagccggtgcttac-tggttgcggggaccgcacagatg 1492
||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct: 48693751 aggtatatccgggccctcc-tcaaagcggtgcttacctggttgcggggaccgcacagatg 48693809
Query: 1493 agccacctccagacctacagcct-cccccagagcagctgtcttcccttagcccaggaggg 1551
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 48693810 agccacctccagacctacagcctccccccagagcagctgtcttccctcagcccaggaggc 48693869
Query: 1552 gttccaccgcccgccagcccagccctttctaattagncgattccgggctctta 1604
|| ||||||||||| |||||||||||| ||| | || ||| ||||| ||||||
Sbjct: 48693870 gtcccaccgcccgcaagcccagcccttcctagtcagccgactccggcctctta 48693922
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 428 cttctaggagcatgtgtatcaaactgtggcaaaatttttcacttagaagtatgttcaaga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48670601 cttctaggagcatgtgtatcaaactgtggcaaaatttttcacttagaagtatgttcaaga 48670660
Query: 488 gattttgctagtgaagtaagcaacgtattaaacaagg 524
|||||||||||||||||||||||||||||||||||||
Sbjct: 48670661 gattttgctagtgaagtaagcaacgtattaaacaagg 48670697
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 953 agtgaccccaactggtggaaaggtgaaacccatcagggaatgggcttgtttccctctaat 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48682335 agtgaccccaactggtggaaaggtgaaacccatcagggaatgggcttgtttccctctaat 48682394
Query: 1013 tttgtgactgcagatctcactgctgaaccagaaatga 1049
|||||||||||||||||||||||||||||||||||||
Sbjct: 48682395 tttgtgactgcagatctcactgctgaaccagaaatga 48682431
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1050 tcaaaacggagaagaagacggtacagtttagtgacgatgttcaggtagaaacaatagaac 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48686386 tcaaaacggagaagaagacggtacagtttagtgacgatgttcaggtagaaacaatagaac 48686445
Query: 1110 cagagccagaacaagcctatattgatgagg 1139
||||||||||||||||||||||||||||||
Sbjct: 48686446 cagagccagaacaagcctatattgatgagg 48686475
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1137 aggataaaatggaccaattgctgcagatgttgcaaagcacagatcccagtgatgaccagc 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48689260 aggataaaatggaccaattgctgcagatgttgcaaagcacagatcccagtgatgaccagc 48689319
Query: 1197 cggatcttccagagttacttcatcttgaag 1226
||||||||||||||||||||||||||||||
Sbjct: 48689320 cggatcttccagagttacttcatcttgaag 48689349
Score = 176 bits (89), Expect = 2e-41
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 669 aggctgcagaacaagcaaaagcaagcccagctctggtagccaaggatcctgggactgtgg 728
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48677996 aggctgcagaacaagcgaaagcaagcccagctctggtagccaaggatcctgggactgtgg 48678055
Query: 729 ctaacaagaaagaagaagaagatttagcaaaag 761
|||||||||||||||||||||||||||||||||
Sbjct: 48678056 ctaacaagaaagaagaagaagatttagcaaaag 48678088
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 266 gagaaagcaaccagtgagatgaatactgctgaagattggggccttattttggacatttgt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48652904 gagaaagcaaccagtgagatgaatactgctgaagattggggccttattttggacatttgt 48652963
Query: 326 gataaagttggtcagtctcgcactgg 351
||||||||||||||||||||||||||
Sbjct: 48652964 gataaagttggtcagtctcgcactgg 48652989
Score = 153 bits (77), Expect = 4e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 351 gacctaaagattgtcttcgctctgttatgaggagggtgaaccacaaagaccctcacgttg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48670443 gacctaaagattgtcttcgctctgttatgaggagggtgaaccacaaagaccctcacgttg 48670502
Query: 411 ctatgcaggctctgact 427
|||||||||||||||||
Sbjct: 48670503 ctatgcaggctctgact 48670519
Score = 115 bits (58), Expect = 8e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 1225 agccatgtgtcaccagatgggacctctcattgatgaaaagctggaagatattgacagg 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48690535 agccatgtgtcaccagatgggacctctcattgatgaaaagctggaagatattgacagg 48690592
Score = 83.8 bits (42), Expect = 3e-13
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 4 tccgcgcgcgcagggggccttcgcggcttctcagctcttgcc 45
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48632914 tccgcgcgcgcagggggccttcgcggcttctcagctcttgcc 48632955
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,254,693
Number of extensions: 323
Number of successful extensions: 323
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 25
Length of query: 1604
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1582
Effective length of database: 2,808,408,574
Effective search space: 4442902364068
Effective search space used: 4442902364068
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)